Multiple sequence alignment - TraesCS5B01G335900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G335900 chr5B 100.000 3620 0 0 1 3620 519008537 519004918 0.000000e+00 6685.0
1 TraesCS5B01G335900 chr5A 91.885 2896 160 37 755 3620 545595500 545592650 0.000000e+00 3976.0
2 TraesCS5B01G335900 chr5D 93.338 2612 129 17 758 3345 429733773 429731183 0.000000e+00 3818.0
3 TraesCS5B01G335900 chr5D 87.899 752 90 1 1 752 361892086 361891336 0.000000e+00 883.0
4 TraesCS5B01G335900 chr5D 95.683 278 11 1 3343 3620 429731056 429730780 2.560000e-121 446.0
5 TraesCS5B01G335900 chr6A 84.492 748 113 3 6 752 614664696 614665441 0.000000e+00 736.0
6 TraesCS5B01G335900 chr7A 82.753 661 114 0 1 661 129996181 129995521 1.120000e-164 590.0
7 TraesCS5B01G335900 chr6D 87.657 397 46 3 1 397 125018314 125018707 3.290000e-125 459.0
8 TraesCS5B01G335900 chr4B 83.217 429 71 1 324 752 414242569 414242142 3.390000e-105 392.0
9 TraesCS5B01G335900 chr3B 84.091 352 53 3 403 752 776855084 776854734 1.610000e-88 337.0
10 TraesCS5B01G335900 chr2D 94.872 39 2 0 3569 3607 605350240 605350278 1.090000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G335900 chr5B 519004918 519008537 3619 True 6685 6685 100.0000 1 3620 1 chr5B.!!$R1 3619
1 TraesCS5B01G335900 chr5A 545592650 545595500 2850 True 3976 3976 91.8850 755 3620 1 chr5A.!!$R1 2865
2 TraesCS5B01G335900 chr5D 429730780 429733773 2993 True 2132 3818 94.5105 758 3620 2 chr5D.!!$R2 2862
3 TraesCS5B01G335900 chr5D 361891336 361892086 750 True 883 883 87.8990 1 752 1 chr5D.!!$R1 751
4 TraesCS5B01G335900 chr6A 614664696 614665441 745 False 736 736 84.4920 6 752 1 chr6A.!!$F1 746
5 TraesCS5B01G335900 chr7A 129995521 129996181 660 True 590 590 82.7530 1 661 1 chr7A.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 668 0.030908 GGTAGGCCGATCGAACTGAG 59.969 60.0 18.66 0.0 0.00 3.35 F
2383 2404 0.038526 CGTGAACACCTACGGAGCTT 60.039 55.0 0.00 0.0 36.71 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2460 2481 1.028905 CTGGCTTCGTGGGTTTCAAA 58.971 50.0 0.0 0.00 0.00 2.69 R
3259 3296 0.036022 GAGTTCAGAACTGCAGCCCT 59.964 55.0 21.0 8.23 43.03 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.890041 CGTTTCCCTGACGTGCCAA 60.890 57.895 0.00 0.00 35.88 4.52
46 47 4.337264 AGCCCCATCCACTTTTATCTTT 57.663 40.909 0.00 0.00 0.00 2.52
91 92 3.328189 GCCTCTCGCTAATGCTGC 58.672 61.111 0.00 0.00 36.97 5.25
124 125 0.526524 CTGTCCGCGGAGAAGATGTC 60.527 60.000 31.97 15.03 0.00 3.06
163 164 8.055790 TCCTTCAACTCTCTCAGATACTTCATA 58.944 37.037 0.00 0.00 0.00 2.15
207 208 5.221722 GGGGACTCTGAAATATGTGCTCATA 60.222 44.000 10.68 10.68 40.26 2.15
216 217 6.321945 TGAAATATGTGCTCATACAATGCCTT 59.678 34.615 10.51 0.00 39.03 4.35
268 269 3.136443 TGACAATTGTCTGGGTGAACTCT 59.864 43.478 32.57 0.00 44.99 3.24
322 323 2.258013 CCTTTTTGCGTCGGGCTCA 61.258 57.895 0.00 0.00 44.05 4.26
381 382 1.136329 AGGGCCCAGACACATCTTGT 61.136 55.000 27.56 0.00 43.10 3.16
399 400 0.721718 GTGACGCTGCAATGGAGTAC 59.278 55.000 3.24 0.00 0.00 2.73
430 431 1.536766 CAAGAATCTTCAGCACCGCAA 59.463 47.619 0.00 0.00 0.00 4.85
445 446 2.899044 GCAAAGGCCGCAACACGTA 61.899 57.895 0.00 0.00 41.42 3.57
448 449 0.816421 AAAGGCCGCAACACGTAGTT 60.816 50.000 0.00 0.00 41.61 2.24
461 462 3.558418 ACACGTAGTTGTGGACATGTTTC 59.442 43.478 0.00 0.00 41.61 2.78
462 463 3.807622 CACGTAGTTGTGGACATGTTTCT 59.192 43.478 0.00 0.00 41.61 2.52
463 464 4.056050 ACGTAGTTGTGGACATGTTTCTC 58.944 43.478 0.00 0.00 37.78 2.87
464 465 4.202223 ACGTAGTTGTGGACATGTTTCTCT 60.202 41.667 0.00 0.00 37.78 3.10
465 466 4.386049 CGTAGTTGTGGACATGTTTCTCTC 59.614 45.833 0.00 0.00 0.00 3.20
466 467 4.422073 AGTTGTGGACATGTTTCTCTCA 57.578 40.909 0.00 0.00 0.00 3.27
467 468 4.978099 AGTTGTGGACATGTTTCTCTCAT 58.022 39.130 0.00 0.00 0.00 2.90
468 469 4.758674 AGTTGTGGACATGTTTCTCTCATG 59.241 41.667 0.00 4.66 45.41 3.07
469 470 4.622260 TGTGGACATGTTTCTCTCATGA 57.378 40.909 0.00 0.00 43.47 3.07
470 471 4.971939 TGTGGACATGTTTCTCTCATGAA 58.028 39.130 0.00 0.00 43.47 2.57
471 472 4.999311 TGTGGACATGTTTCTCTCATGAAG 59.001 41.667 0.00 0.00 43.47 3.02
472 473 5.221702 TGTGGACATGTTTCTCTCATGAAGA 60.222 40.000 0.00 0.18 43.47 2.87
473 474 5.702670 GTGGACATGTTTCTCTCATGAAGAA 59.297 40.000 0.00 13.14 43.47 2.52
474 475 5.936372 TGGACATGTTTCTCTCATGAAGAAG 59.064 40.000 15.31 6.72 43.47 2.85
475 476 6.169094 GGACATGTTTCTCTCATGAAGAAGA 58.831 40.000 15.31 8.49 43.47 2.87
476 477 6.822676 GGACATGTTTCTCTCATGAAGAAGAT 59.177 38.462 15.31 11.15 43.47 2.40
477 478 7.011295 GGACATGTTTCTCTCATGAAGAAGATC 59.989 40.741 15.31 12.10 43.47 2.75
478 479 6.822676 ACATGTTTCTCTCATGAAGAAGATCC 59.177 38.462 15.31 9.16 43.47 3.36
479 480 5.414360 TGTTTCTCTCATGAAGAAGATCCG 58.586 41.667 15.31 0.00 32.23 4.18
480 481 3.724508 TCTCTCATGAAGAAGATCCGC 57.275 47.619 0.00 0.00 32.23 5.54
481 482 3.026694 TCTCTCATGAAGAAGATCCGCA 58.973 45.455 0.00 0.00 32.23 5.69
482 483 3.067883 TCTCTCATGAAGAAGATCCGCAG 59.932 47.826 0.00 0.00 32.23 5.18
483 484 2.762887 TCTCATGAAGAAGATCCGCAGT 59.237 45.455 0.00 0.00 0.00 4.40
484 485 3.196469 TCTCATGAAGAAGATCCGCAGTT 59.804 43.478 0.00 0.00 0.00 3.16
485 486 3.264947 TCATGAAGAAGATCCGCAGTTG 58.735 45.455 0.00 0.00 0.00 3.16
486 487 2.099141 TGAAGAAGATCCGCAGTTGG 57.901 50.000 0.00 0.00 0.00 3.77
487 488 1.339055 TGAAGAAGATCCGCAGTTGGG 60.339 52.381 0.00 0.00 0.00 4.12
488 489 0.984230 AAGAAGATCCGCAGTTGGGA 59.016 50.000 0.00 0.00 38.10 4.37
489 490 1.207791 AGAAGATCCGCAGTTGGGAT 58.792 50.000 0.00 0.00 46.82 3.85
490 491 1.134280 AGAAGATCCGCAGTTGGGATG 60.134 52.381 0.00 0.00 44.23 3.51
491 492 0.107017 AAGATCCGCAGTTGGGATGG 60.107 55.000 0.00 0.00 44.23 3.51
492 493 0.982852 AGATCCGCAGTTGGGATGGA 60.983 55.000 0.00 0.00 44.23 3.41
493 494 0.109342 GATCCGCAGTTGGGATGGAT 59.891 55.000 0.00 0.00 44.23 3.41
494 495 0.552848 ATCCGCAGTTGGGATGGATT 59.447 50.000 0.00 0.00 42.63 3.01
495 496 0.394216 TCCGCAGTTGGGATGGATTG 60.394 55.000 0.00 0.00 0.00 2.67
496 497 1.434696 CGCAGTTGGGATGGATTGC 59.565 57.895 0.00 0.00 0.00 3.56
497 498 1.033746 CGCAGTTGGGATGGATTGCT 61.034 55.000 0.00 0.00 0.00 3.91
498 499 0.458669 GCAGTTGGGATGGATTGCTG 59.541 55.000 0.00 0.00 0.00 4.41
499 500 1.108776 CAGTTGGGATGGATTGCTGG 58.891 55.000 0.00 0.00 0.00 4.85
500 501 0.032813 AGTTGGGATGGATTGCTGGG 60.033 55.000 0.00 0.00 0.00 4.45
501 502 1.381599 TTGGGATGGATTGCTGGGC 60.382 57.895 0.00 0.00 0.00 5.36
502 503 2.165643 TTGGGATGGATTGCTGGGCA 62.166 55.000 0.00 0.00 36.47 5.36
513 514 4.894201 CTGGGCAAGCCTCCATAG 57.106 61.111 11.40 0.00 36.10 2.23
514 515 2.224821 CTGGGCAAGCCTCCATAGA 58.775 57.895 11.40 0.00 36.10 1.98
515 516 0.548031 CTGGGCAAGCCTCCATAGAA 59.452 55.000 11.40 0.00 36.10 2.10
516 517 0.998928 TGGGCAAGCCTCCATAGAAA 59.001 50.000 11.40 0.00 36.10 2.52
517 518 1.064463 TGGGCAAGCCTCCATAGAAAG 60.064 52.381 11.40 0.00 36.10 2.62
518 519 1.212935 GGGCAAGCCTCCATAGAAAGA 59.787 52.381 11.40 0.00 36.10 2.52
519 520 2.158549 GGGCAAGCCTCCATAGAAAGAT 60.159 50.000 11.40 0.00 36.10 2.40
520 521 3.560105 GGCAAGCCTCCATAGAAAGATT 58.440 45.455 3.29 0.00 0.00 2.40
521 522 3.956848 GGCAAGCCTCCATAGAAAGATTT 59.043 43.478 3.29 0.00 0.00 2.17
522 523 4.403752 GGCAAGCCTCCATAGAAAGATTTT 59.596 41.667 3.29 0.00 0.00 1.82
523 524 5.346522 GCAAGCCTCCATAGAAAGATTTTG 58.653 41.667 0.00 0.00 0.00 2.44
524 525 5.126061 GCAAGCCTCCATAGAAAGATTTTGA 59.874 40.000 0.00 0.00 0.00 2.69
525 526 6.558909 CAAGCCTCCATAGAAAGATTTTGAC 58.441 40.000 0.00 0.00 0.00 3.18
526 527 5.196695 AGCCTCCATAGAAAGATTTTGACC 58.803 41.667 0.00 0.00 0.00 4.02
527 528 5.044550 AGCCTCCATAGAAAGATTTTGACCT 60.045 40.000 0.00 0.00 0.00 3.85
528 529 5.654209 GCCTCCATAGAAAGATTTTGACCTT 59.346 40.000 0.00 0.00 0.00 3.50
529 530 6.183360 GCCTCCATAGAAAGATTTTGACCTTC 60.183 42.308 0.00 0.00 0.00 3.46
530 531 6.037610 CCTCCATAGAAAGATTTTGACCTTCG 59.962 42.308 0.00 0.00 0.00 3.79
531 532 6.707290 TCCATAGAAAGATTTTGACCTTCGA 58.293 36.000 0.00 0.00 0.00 3.71
532 533 6.818644 TCCATAGAAAGATTTTGACCTTCGAG 59.181 38.462 0.00 0.00 0.00 4.04
533 534 6.037610 CCATAGAAAGATTTTGACCTTCGAGG 59.962 42.308 0.03 0.03 42.49 4.63
534 535 4.327680 AGAAAGATTTTGACCTTCGAGGG 58.672 43.478 12.81 12.81 40.58 4.30
535 536 3.790089 AAGATTTTGACCTTCGAGGGT 57.210 42.857 20.61 20.61 40.58 4.34
536 537 4.903045 AAGATTTTGACCTTCGAGGGTA 57.097 40.909 20.51 4.05 40.58 3.69
537 538 5.437191 AAGATTTTGACCTTCGAGGGTAT 57.563 39.130 20.51 9.39 40.58 2.73
538 539 6.555463 AAGATTTTGACCTTCGAGGGTATA 57.445 37.500 20.51 9.12 40.58 1.47
539 540 6.749036 AGATTTTGACCTTCGAGGGTATAT 57.251 37.500 20.51 10.22 40.58 0.86
540 541 6.760291 AGATTTTGACCTTCGAGGGTATATC 58.240 40.000 20.51 17.50 40.58 1.63
541 542 6.555360 AGATTTTGACCTTCGAGGGTATATCT 59.445 38.462 20.51 19.18 40.58 1.98
542 543 7.728981 AGATTTTGACCTTCGAGGGTATATCTA 59.271 37.037 20.51 1.08 40.58 1.98
543 544 7.664552 TTTTGACCTTCGAGGGTATATCTAA 57.335 36.000 20.51 7.49 40.58 2.10
544 545 6.896021 TTGACCTTCGAGGGTATATCTAAG 57.104 41.667 20.51 0.00 40.58 2.18
545 546 5.950023 TGACCTTCGAGGGTATATCTAAGT 58.050 41.667 20.51 0.00 40.58 2.24
546 547 6.371278 TGACCTTCGAGGGTATATCTAAGTT 58.629 40.000 20.51 0.00 40.58 2.66
547 548 6.489361 TGACCTTCGAGGGTATATCTAAGTTC 59.511 42.308 20.51 2.97 40.58 3.01
548 549 5.774184 ACCTTCGAGGGTATATCTAAGTTCC 59.226 44.000 19.01 0.00 40.58 3.62
549 550 5.773680 CCTTCGAGGGTATATCTAAGTTCCA 59.226 44.000 5.19 0.00 0.00 3.53
550 551 6.071840 CCTTCGAGGGTATATCTAAGTTCCAG 60.072 46.154 5.19 0.00 0.00 3.86
551 552 6.196918 TCGAGGGTATATCTAAGTTCCAGA 57.803 41.667 0.00 0.00 0.00 3.86
552 553 6.239396 TCGAGGGTATATCTAAGTTCCAGAG 58.761 44.000 0.00 0.00 0.00 3.35
553 554 6.005198 CGAGGGTATATCTAAGTTCCAGAGT 58.995 44.000 0.00 0.00 0.00 3.24
554 555 6.490721 CGAGGGTATATCTAAGTTCCAGAGTT 59.509 42.308 0.00 0.00 0.00 3.01
555 556 7.014422 CGAGGGTATATCTAAGTTCCAGAGTTT 59.986 40.741 0.00 0.00 0.00 2.66
556 557 8.252624 AGGGTATATCTAAGTTCCAGAGTTTC 57.747 38.462 0.00 0.00 0.00 2.78
557 558 7.844779 AGGGTATATCTAAGTTCCAGAGTTTCA 59.155 37.037 0.00 0.00 0.00 2.69
558 559 8.652290 GGGTATATCTAAGTTCCAGAGTTTCAT 58.348 37.037 0.00 0.00 0.00 2.57
559 560 9.699703 GGTATATCTAAGTTCCAGAGTTTCATC 57.300 37.037 0.00 0.00 0.00 2.92
560 561 9.699703 GTATATCTAAGTTCCAGAGTTTCATCC 57.300 37.037 0.00 0.00 0.00 3.51
561 562 6.627087 ATCTAAGTTCCAGAGTTTCATCCA 57.373 37.500 0.00 0.00 0.00 3.41
562 563 5.794894 TCTAAGTTCCAGAGTTTCATCCAC 58.205 41.667 0.00 0.00 0.00 4.02
563 564 3.045601 AGTTCCAGAGTTTCATCCACG 57.954 47.619 0.00 0.00 0.00 4.94
564 565 1.464997 GTTCCAGAGTTTCATCCACGC 59.535 52.381 0.00 0.00 0.00 5.34
565 566 0.036388 TCCAGAGTTTCATCCACGCC 60.036 55.000 0.00 0.00 0.00 5.68
566 567 0.036010 CCAGAGTTTCATCCACGCCT 60.036 55.000 0.00 0.00 0.00 5.52
567 568 1.611673 CCAGAGTTTCATCCACGCCTT 60.612 52.381 0.00 0.00 0.00 4.35
568 569 1.466167 CAGAGTTTCATCCACGCCTTG 59.534 52.381 0.00 0.00 0.00 3.61
569 570 1.072331 AGAGTTTCATCCACGCCTTGT 59.928 47.619 0.00 0.00 0.00 3.16
578 579 3.532138 CACGCCTTGTGTTGACTTG 57.468 52.632 0.00 0.00 43.88 3.16
579 580 0.592247 CACGCCTTGTGTTGACTTGC 60.592 55.000 0.00 0.00 43.88 4.01
580 581 0.748005 ACGCCTTGTGTTGACTTGCT 60.748 50.000 0.00 0.00 0.00 3.91
581 582 0.317269 CGCCTTGTGTTGACTTGCTG 60.317 55.000 0.00 0.00 0.00 4.41
582 583 0.740737 GCCTTGTGTTGACTTGCTGT 59.259 50.000 0.00 0.00 0.00 4.40
583 584 1.946768 GCCTTGTGTTGACTTGCTGTA 59.053 47.619 0.00 0.00 0.00 2.74
584 585 2.554032 GCCTTGTGTTGACTTGCTGTAT 59.446 45.455 0.00 0.00 0.00 2.29
585 586 3.365364 GCCTTGTGTTGACTTGCTGTATC 60.365 47.826 0.00 0.00 0.00 2.24
586 587 3.189287 CCTTGTGTTGACTTGCTGTATCC 59.811 47.826 0.00 0.00 0.00 2.59
587 588 2.412870 TGTGTTGACTTGCTGTATCCG 58.587 47.619 0.00 0.00 0.00 4.18
588 589 2.036604 TGTGTTGACTTGCTGTATCCGA 59.963 45.455 0.00 0.00 0.00 4.55
589 590 2.412089 GTGTTGACTTGCTGTATCCGAC 59.588 50.000 0.00 0.00 0.00 4.79
590 591 1.654105 GTTGACTTGCTGTATCCGACG 59.346 52.381 0.00 0.00 0.00 5.12
591 592 1.170442 TGACTTGCTGTATCCGACGA 58.830 50.000 0.00 0.00 0.00 4.20
592 593 1.542472 TGACTTGCTGTATCCGACGAA 59.458 47.619 0.00 0.00 0.00 3.85
593 594 1.918609 GACTTGCTGTATCCGACGAAC 59.081 52.381 0.00 0.00 0.00 3.95
594 595 1.278238 CTTGCTGTATCCGACGAACC 58.722 55.000 0.00 0.00 0.00 3.62
595 596 0.604073 TTGCTGTATCCGACGAACCA 59.396 50.000 0.00 0.00 0.00 3.67
596 597 0.172578 TGCTGTATCCGACGAACCAG 59.827 55.000 0.00 0.00 0.00 4.00
597 598 0.172803 GCTGTATCCGACGAACCAGT 59.827 55.000 0.00 0.00 0.00 4.00
598 599 1.798079 GCTGTATCCGACGAACCAGTC 60.798 57.143 0.00 0.00 37.76 3.51
599 600 0.813184 TGTATCCGACGAACCAGTCC 59.187 55.000 0.00 0.00 37.85 3.85
600 601 1.101331 GTATCCGACGAACCAGTCCT 58.899 55.000 0.00 0.00 37.85 3.85
601 602 1.475682 GTATCCGACGAACCAGTCCTT 59.524 52.381 0.00 0.00 37.85 3.36
602 603 0.531200 ATCCGACGAACCAGTCCTTC 59.469 55.000 0.00 0.00 37.85 3.46
603 604 1.080025 CCGACGAACCAGTCCTTCC 60.080 63.158 0.00 0.00 37.85 3.46
604 605 1.080025 CGACGAACCAGTCCTTCCC 60.080 63.158 0.00 0.00 37.85 3.97
605 606 1.533469 CGACGAACCAGTCCTTCCCT 61.533 60.000 0.00 0.00 37.85 4.20
606 607 0.246910 GACGAACCAGTCCTTCCCTC 59.753 60.000 0.00 0.00 35.22 4.30
607 608 1.215647 CGAACCAGTCCTTCCCTCG 59.784 63.158 0.00 0.00 0.00 4.63
608 609 1.248785 CGAACCAGTCCTTCCCTCGA 61.249 60.000 0.00 0.00 0.00 4.04
609 610 0.533032 GAACCAGTCCTTCCCTCGAG 59.467 60.000 5.13 5.13 0.00 4.04
610 611 1.545706 AACCAGTCCTTCCCTCGAGC 61.546 60.000 6.99 0.00 0.00 5.03
611 612 2.726351 CCAGTCCTTCCCTCGAGCC 61.726 68.421 6.99 0.00 0.00 4.70
612 613 1.984570 CAGTCCTTCCCTCGAGCCA 60.985 63.158 6.99 0.00 0.00 4.75
613 614 1.229209 AGTCCTTCCCTCGAGCCAA 60.229 57.895 6.99 0.20 0.00 4.52
614 615 1.219393 GTCCTTCCCTCGAGCCAAG 59.781 63.158 6.99 10.49 0.00 3.61
615 616 2.124942 CCTTCCCTCGAGCCAAGC 60.125 66.667 6.99 0.00 0.00 4.01
616 617 2.124942 CTTCCCTCGAGCCAAGCC 60.125 66.667 6.99 0.00 0.00 4.35
617 618 2.607750 TTCCCTCGAGCCAAGCCT 60.608 61.111 6.99 0.00 0.00 4.58
618 619 2.585791 CTTCCCTCGAGCCAAGCCTC 62.586 65.000 6.99 0.00 0.00 4.70
619 620 3.393970 CCCTCGAGCCAAGCCTCA 61.394 66.667 6.99 0.00 0.00 3.86
620 621 2.125350 CCTCGAGCCAAGCCTCAC 60.125 66.667 6.99 0.00 0.00 3.51
621 622 2.507992 CTCGAGCCAAGCCTCACG 60.508 66.667 0.00 0.00 0.00 4.35
622 623 3.288308 CTCGAGCCAAGCCTCACGT 62.288 63.158 0.00 0.00 0.00 4.49
623 624 2.811317 CGAGCCAAGCCTCACGTC 60.811 66.667 0.00 0.00 0.00 4.34
624 625 2.435059 GAGCCAAGCCTCACGTCC 60.435 66.667 0.00 0.00 0.00 4.79
625 626 3.959991 GAGCCAAGCCTCACGTCCC 62.960 68.421 0.00 0.00 0.00 4.46
626 627 4.329545 GCCAAGCCTCACGTCCCA 62.330 66.667 0.00 0.00 0.00 4.37
627 628 2.046892 CCAAGCCTCACGTCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
628 629 2.743928 CAAGCCTCACGTCCCAGC 60.744 66.667 0.00 0.00 0.00 4.85
629 630 2.925170 AAGCCTCACGTCCCAGCT 60.925 61.111 0.00 0.00 34.64 4.24
630 631 2.520536 AAGCCTCACGTCCCAGCTT 61.521 57.895 5.96 5.96 38.90 3.74
631 632 2.032681 GCCTCACGTCCCAGCTTT 59.967 61.111 0.00 0.00 0.00 3.51
632 633 2.328099 GCCTCACGTCCCAGCTTTG 61.328 63.158 0.00 0.00 0.00 2.77
633 634 1.071471 CCTCACGTCCCAGCTTTGT 59.929 57.895 0.00 0.00 0.00 2.83
634 635 1.230635 CCTCACGTCCCAGCTTTGTG 61.231 60.000 0.00 0.00 0.00 3.33
635 636 0.532862 CTCACGTCCCAGCTTTGTGT 60.533 55.000 0.00 0.00 32.55 3.72
636 637 0.531974 TCACGTCCCAGCTTTGTGTC 60.532 55.000 0.00 0.00 32.55 3.67
637 638 0.813610 CACGTCCCAGCTTTGTGTCA 60.814 55.000 0.00 0.00 0.00 3.58
638 639 0.107410 ACGTCCCAGCTTTGTGTCAA 60.107 50.000 0.00 0.00 0.00 3.18
639 640 1.238439 CGTCCCAGCTTTGTGTCAAT 58.762 50.000 0.00 0.00 0.00 2.57
640 641 1.069022 CGTCCCAGCTTTGTGTCAATG 60.069 52.381 0.00 0.00 0.00 2.82
641 642 2.229792 GTCCCAGCTTTGTGTCAATGA 58.770 47.619 0.00 0.00 0.00 2.57
642 643 2.227388 GTCCCAGCTTTGTGTCAATGAG 59.773 50.000 0.00 0.00 0.00 2.90
643 644 1.068055 CCCAGCTTTGTGTCAATGAGC 60.068 52.381 0.00 0.00 0.00 4.26
644 645 1.610038 CCAGCTTTGTGTCAATGAGCA 59.390 47.619 8.27 0.00 35.86 4.26
645 646 2.230508 CCAGCTTTGTGTCAATGAGCAT 59.769 45.455 8.27 0.00 35.86 3.79
646 647 3.441222 CCAGCTTTGTGTCAATGAGCATA 59.559 43.478 8.27 0.00 35.86 3.14
647 648 4.409570 CAGCTTTGTGTCAATGAGCATAC 58.590 43.478 8.27 0.00 35.86 2.39
648 649 3.125829 AGCTTTGTGTCAATGAGCATACG 59.874 43.478 8.27 0.00 35.86 3.06
649 650 3.728864 GCTTTGTGTCAATGAGCATACGG 60.729 47.826 0.00 0.00 33.68 4.02
650 651 2.760634 TGTGTCAATGAGCATACGGT 57.239 45.000 0.00 0.00 0.00 4.83
651 652 3.878160 TGTGTCAATGAGCATACGGTA 57.122 42.857 0.00 0.00 0.00 4.02
652 653 3.780902 TGTGTCAATGAGCATACGGTAG 58.219 45.455 0.00 0.00 0.00 3.18
653 654 3.123804 GTGTCAATGAGCATACGGTAGG 58.876 50.000 0.00 0.00 0.00 3.18
654 655 2.135933 GTCAATGAGCATACGGTAGGC 58.864 52.381 16.37 16.37 35.35 3.93
655 656 1.070134 TCAATGAGCATACGGTAGGCC 59.930 52.381 19.91 12.46 35.82 5.19
665 666 4.732106 GGTAGGCCGATCGAACTG 57.268 61.111 18.66 0.00 0.00 3.16
666 667 2.112898 GGTAGGCCGATCGAACTGA 58.887 57.895 18.66 1.13 0.00 3.41
667 668 0.030908 GGTAGGCCGATCGAACTGAG 59.969 60.000 18.66 0.00 0.00 3.35
668 669 1.022735 GTAGGCCGATCGAACTGAGA 58.977 55.000 18.66 0.00 0.00 3.27
669 670 1.404391 GTAGGCCGATCGAACTGAGAA 59.596 52.381 18.66 0.00 0.00 2.87
670 671 0.457851 AGGCCGATCGAACTGAGAAG 59.542 55.000 18.66 0.00 0.00 2.85
671 672 0.528684 GGCCGATCGAACTGAGAAGG 60.529 60.000 18.66 0.00 0.00 3.46
672 673 0.173708 GCCGATCGAACTGAGAAGGT 59.826 55.000 18.66 0.00 0.00 3.50
673 674 1.404315 GCCGATCGAACTGAGAAGGTT 60.404 52.381 18.66 0.00 0.00 3.50
674 675 2.531206 CCGATCGAACTGAGAAGGTTC 58.469 52.381 18.66 0.00 39.49 3.62
675 676 2.531206 CGATCGAACTGAGAAGGTTCC 58.469 52.381 10.26 0.00 39.65 3.62
676 677 2.531206 GATCGAACTGAGAAGGTTCCG 58.469 52.381 0.00 0.00 39.65 4.30
677 678 1.325355 TCGAACTGAGAAGGTTCCGT 58.675 50.000 0.00 0.00 39.65 4.69
678 679 1.684983 TCGAACTGAGAAGGTTCCGTT 59.315 47.619 0.00 0.00 39.65 4.44
679 680 2.059541 CGAACTGAGAAGGTTCCGTTC 58.940 52.381 0.00 0.00 39.65 3.95
680 681 2.288273 CGAACTGAGAAGGTTCCGTTCT 60.288 50.000 11.87 0.00 40.57 3.01
681 682 3.729966 GAACTGAGAAGGTTCCGTTCTT 58.270 45.455 1.27 0.00 38.46 2.52
682 683 3.840124 ACTGAGAAGGTTCCGTTCTTT 57.160 42.857 1.27 0.00 38.46 2.52
683 684 4.152284 ACTGAGAAGGTTCCGTTCTTTT 57.848 40.909 1.27 0.00 38.46 2.27
684 685 4.127907 ACTGAGAAGGTTCCGTTCTTTTC 58.872 43.478 1.27 0.00 38.46 2.29
685 686 4.127171 CTGAGAAGGTTCCGTTCTTTTCA 58.873 43.478 1.27 0.00 38.46 2.69
686 687 4.714632 TGAGAAGGTTCCGTTCTTTTCAT 58.285 39.130 1.27 0.00 38.46 2.57
687 688 4.515191 TGAGAAGGTTCCGTTCTTTTCATG 59.485 41.667 1.27 0.00 38.46 3.07
688 689 4.461198 AGAAGGTTCCGTTCTTTTCATGT 58.539 39.130 0.00 0.00 35.45 3.21
689 690 5.617252 AGAAGGTTCCGTTCTTTTCATGTA 58.383 37.500 0.00 0.00 35.45 2.29
690 691 5.469084 AGAAGGTTCCGTTCTTTTCATGTAC 59.531 40.000 0.00 0.00 35.45 2.90
691 692 4.070009 AGGTTCCGTTCTTTTCATGTACC 58.930 43.478 0.00 0.00 0.00 3.34
692 693 3.189910 GGTTCCGTTCTTTTCATGTACCC 59.810 47.826 0.00 0.00 0.00 3.69
693 694 3.773418 TCCGTTCTTTTCATGTACCCA 57.227 42.857 0.00 0.00 0.00 4.51
694 695 3.404899 TCCGTTCTTTTCATGTACCCAC 58.595 45.455 0.00 0.00 0.00 4.61
695 696 2.158841 CCGTTCTTTTCATGTACCCACG 59.841 50.000 0.00 0.00 0.00 4.94
696 697 3.061322 CGTTCTTTTCATGTACCCACGA 58.939 45.455 0.00 0.00 0.00 4.35
697 698 3.120786 CGTTCTTTTCATGTACCCACGAC 60.121 47.826 0.00 0.00 0.00 4.34
698 699 3.048337 TCTTTTCATGTACCCACGACC 57.952 47.619 0.00 0.00 0.00 4.79
699 700 2.369203 TCTTTTCATGTACCCACGACCA 59.631 45.455 0.00 0.00 0.00 4.02
700 701 2.465860 TTTCATGTACCCACGACCAG 57.534 50.000 0.00 0.00 0.00 4.00
701 702 1.634960 TTCATGTACCCACGACCAGA 58.365 50.000 0.00 0.00 0.00 3.86
702 703 1.634960 TCATGTACCCACGACCAGAA 58.365 50.000 0.00 0.00 0.00 3.02
703 704 1.548719 TCATGTACCCACGACCAGAAG 59.451 52.381 0.00 0.00 0.00 2.85
704 705 1.275291 CATGTACCCACGACCAGAAGT 59.725 52.381 0.00 0.00 0.00 3.01
705 706 0.963962 TGTACCCACGACCAGAAGTC 59.036 55.000 0.00 0.00 42.54 3.01
706 707 0.245813 GTACCCACGACCAGAAGTCC 59.754 60.000 0.00 0.00 43.08 3.85
707 708 0.113776 TACCCACGACCAGAAGTCCT 59.886 55.000 0.00 0.00 43.08 3.85
708 709 1.186267 ACCCACGACCAGAAGTCCTC 61.186 60.000 0.00 0.00 43.08 3.71
709 710 0.900647 CCCACGACCAGAAGTCCTCT 60.901 60.000 0.00 0.00 43.08 3.69
710 711 1.616187 CCCACGACCAGAAGTCCTCTA 60.616 57.143 0.00 0.00 43.08 2.43
711 712 2.379972 CCACGACCAGAAGTCCTCTAT 58.620 52.381 0.00 0.00 43.08 1.98
712 713 3.552875 CCACGACCAGAAGTCCTCTATA 58.447 50.000 0.00 0.00 43.08 1.31
713 714 4.145807 CCACGACCAGAAGTCCTCTATAT 58.854 47.826 0.00 0.00 43.08 0.86
714 715 4.022762 CCACGACCAGAAGTCCTCTATATG 60.023 50.000 0.00 0.00 43.08 1.78
715 716 4.580995 CACGACCAGAAGTCCTCTATATGT 59.419 45.833 0.00 0.00 43.08 2.29
716 717 4.822896 ACGACCAGAAGTCCTCTATATGTC 59.177 45.833 0.00 0.00 43.08 3.06
717 718 5.067273 CGACCAGAAGTCCTCTATATGTCT 58.933 45.833 0.00 0.00 43.08 3.41
718 719 5.533154 CGACCAGAAGTCCTCTATATGTCTT 59.467 44.000 0.00 0.00 43.08 3.01
719 720 6.514212 CGACCAGAAGTCCTCTATATGTCTTG 60.514 46.154 0.00 0.00 43.08 3.02
720 721 6.198639 ACCAGAAGTCCTCTATATGTCTTGT 58.801 40.000 0.00 0.00 31.12 3.16
721 722 6.097554 ACCAGAAGTCCTCTATATGTCTTGTG 59.902 42.308 0.00 0.00 31.12 3.33
722 723 5.982516 CAGAAGTCCTCTATATGTCTTGTGC 59.017 44.000 0.00 0.00 31.12 4.57
723 724 5.658634 AGAAGTCCTCTATATGTCTTGTGCA 59.341 40.000 0.00 0.00 30.22 4.57
724 725 6.326064 AGAAGTCCTCTATATGTCTTGTGCAT 59.674 38.462 0.00 0.00 30.22 3.96
725 726 7.507277 AGAAGTCCTCTATATGTCTTGTGCATA 59.493 37.037 0.00 0.00 33.91 3.14
726 727 7.225784 AGTCCTCTATATGTCTTGTGCATAG 57.774 40.000 0.00 0.00 33.05 2.23
727 728 6.210385 AGTCCTCTATATGTCTTGTGCATAGG 59.790 42.308 0.00 0.00 33.05 2.57
728 729 5.481824 TCCTCTATATGTCTTGTGCATAGGG 59.518 44.000 0.00 0.00 33.05 3.53
729 730 5.337894 CCTCTATATGTCTTGTGCATAGGGG 60.338 48.000 0.00 0.00 34.39 4.79
730 731 5.402630 TCTATATGTCTTGTGCATAGGGGA 58.597 41.667 0.00 0.00 33.05 4.81
731 732 5.843969 TCTATATGTCTTGTGCATAGGGGAA 59.156 40.000 0.00 0.00 33.05 3.97
732 733 3.959495 ATGTCTTGTGCATAGGGGAAT 57.041 42.857 0.00 0.00 0.00 3.01
733 734 3.737559 TGTCTTGTGCATAGGGGAATT 57.262 42.857 0.00 0.00 0.00 2.17
734 735 3.355378 TGTCTTGTGCATAGGGGAATTG 58.645 45.455 0.00 0.00 0.00 2.32
735 736 3.010027 TGTCTTGTGCATAGGGGAATTGA 59.990 43.478 0.00 0.00 0.00 2.57
736 737 3.378427 GTCTTGTGCATAGGGGAATTGAC 59.622 47.826 0.00 0.00 0.00 3.18
737 738 3.010027 TCTTGTGCATAGGGGAATTGACA 59.990 43.478 0.00 0.00 0.00 3.58
738 739 3.003394 TGTGCATAGGGGAATTGACAG 57.997 47.619 0.00 0.00 0.00 3.51
739 740 2.575735 TGTGCATAGGGGAATTGACAGA 59.424 45.455 0.00 0.00 0.00 3.41
740 741 3.010027 TGTGCATAGGGGAATTGACAGAA 59.990 43.478 0.00 0.00 0.00 3.02
741 742 4.210331 GTGCATAGGGGAATTGACAGAAT 58.790 43.478 0.00 0.00 0.00 2.40
742 743 4.037208 GTGCATAGGGGAATTGACAGAATG 59.963 45.833 0.00 0.00 46.00 2.67
743 744 3.571401 GCATAGGGGAATTGACAGAATGG 59.429 47.826 0.00 0.00 43.62 3.16
744 745 4.796606 CATAGGGGAATTGACAGAATGGT 58.203 43.478 0.00 0.00 43.62 3.55
745 746 3.833559 AGGGGAATTGACAGAATGGTT 57.166 42.857 0.00 0.00 43.62 3.67
746 747 4.132122 AGGGGAATTGACAGAATGGTTT 57.868 40.909 0.00 0.00 43.62 3.27
747 748 3.834231 AGGGGAATTGACAGAATGGTTTG 59.166 43.478 0.00 0.00 43.62 2.93
748 749 3.831911 GGGGAATTGACAGAATGGTTTGA 59.168 43.478 0.00 0.00 43.62 2.69
749 750 4.082026 GGGGAATTGACAGAATGGTTTGAG 60.082 45.833 0.00 0.00 43.62 3.02
750 751 4.488879 GGAATTGACAGAATGGTTTGAGC 58.511 43.478 0.00 0.00 43.62 4.26
751 752 4.022068 GGAATTGACAGAATGGTTTGAGCA 60.022 41.667 0.00 0.00 43.62 4.26
752 753 5.509501 GGAATTGACAGAATGGTTTGAGCAA 60.510 40.000 0.00 0.00 43.62 3.91
753 754 4.572985 TTGACAGAATGGTTTGAGCAAG 57.427 40.909 0.00 0.00 43.62 4.01
761 762 1.072173 TGGTTTGAGCAAGAGCAGCTA 59.928 47.619 0.00 0.00 43.58 3.32
812 813 3.822735 TGAGAAGAATTGCAAGAGGTTGG 59.177 43.478 4.94 0.00 33.87 3.77
836 838 1.002773 TCTCTGCATGCAAGAGCTTCA 59.997 47.619 28.10 16.43 42.74 3.02
839 841 3.613030 TCTGCATGCAAGAGCTTCAATA 58.387 40.909 22.88 0.00 42.74 1.90
841 843 2.686405 TGCATGCAAGAGCTTCAATAGG 59.314 45.455 20.30 0.00 42.74 2.57
843 845 3.879295 GCATGCAAGAGCTTCAATAGGTA 59.121 43.478 14.21 0.00 42.74 3.08
849 851 6.098266 TGCAAGAGCTTCAATAGGTAGTGATA 59.902 38.462 0.00 0.00 42.74 2.15
895 897 3.281332 GGCTACATGGGCCTTGAAA 57.719 52.632 24.70 11.70 45.57 2.69
896 898 1.780503 GGCTACATGGGCCTTGAAAT 58.219 50.000 24.70 6.36 45.57 2.17
897 899 1.410153 GGCTACATGGGCCTTGAAATG 59.590 52.381 24.70 12.42 45.57 2.32
947 962 0.107831 CCAGACCGAAACCCTGAACA 59.892 55.000 0.00 0.00 0.00 3.18
986 1001 2.356313 CAACCGCGACAGAGCAGT 60.356 61.111 8.23 0.00 36.85 4.40
1041 1062 2.750350 CACCACCTCTCCACCACC 59.250 66.667 0.00 0.00 0.00 4.61
1069 1090 3.445518 CTTCTCCGCCGCCTATGCA 62.446 63.158 0.00 0.00 37.32 3.96
1077 1098 2.586079 CGCCTATGCACCACCGAG 60.586 66.667 0.00 0.00 37.32 4.63
1078 1099 2.203070 GCCTATGCACCACCGAGG 60.203 66.667 0.00 0.00 45.67 4.63
1271 1292 1.874345 GCGTTCTCTTCCACCCTCGA 61.874 60.000 0.00 0.00 0.00 4.04
1578 1599 3.474570 GGGATGTCTGCCGAGGCT 61.475 66.667 15.75 0.00 42.51 4.58
1653 1674 2.055042 GCTCGCCTCTCTCCTTGGA 61.055 63.158 0.00 0.00 0.00 3.53
1785 1806 2.029964 GCCGGGTGTCTCGACAAA 59.970 61.111 2.18 0.00 43.77 2.83
2085 2106 0.109532 TGGAGACACATTGCGGGAAA 59.890 50.000 0.00 0.00 33.40 3.13
2121 2142 1.230635 ACGCAGCGATGAAAGTGCTT 61.231 50.000 24.65 0.00 36.69 3.91
2208 2229 1.146263 GGGGACCGGCAATGTAGAG 59.854 63.158 0.00 0.00 40.86 2.43
2217 2238 0.740868 GCAATGTAGAGGCTGCACGA 60.741 55.000 0.50 0.00 34.87 4.35
2226 2247 2.076863 GAGGCTGCACGAAAGTTGTAT 58.923 47.619 0.50 0.00 46.40 2.29
2275 2296 5.057149 AGCCGAATGTGGTGACTTATAATC 58.943 41.667 0.00 0.00 0.00 1.75
2383 2404 0.038526 CGTGAACACCTACGGAGCTT 60.039 55.000 0.00 0.00 36.71 3.74
2448 2469 0.673644 CGACGCTGAGGGAAATGGTT 60.674 55.000 2.65 0.00 0.00 3.67
2460 2481 4.293368 AGGGAAATGGTTGAGGAGAAATCT 59.707 41.667 0.00 0.00 0.00 2.40
2517 2538 3.710722 CTGCTGAGGAAGGCCGGT 61.711 66.667 1.90 0.00 39.96 5.28
2548 2569 0.514691 GCACGAAGAGCTTGTGGAAG 59.485 55.000 10.15 0.00 41.95 3.46
2601 2622 1.278985 TCAGAGGATGCGTTGTGGAAT 59.721 47.619 0.00 0.00 0.00 3.01
2897 2919 2.816958 CAGCAGCTACAGGCACCG 60.817 66.667 0.00 0.00 44.79 4.94
3003 3030 6.465439 TGGTGTGTTGTATCCTAGTATCAG 57.535 41.667 0.00 0.00 0.00 2.90
3183 3211 6.492007 AGACTGTTATTGAAGTGCAATCTG 57.508 37.500 0.00 0.00 43.64 2.90
3244 3281 6.909357 GTCGAGAAATAATGCTTCCTTGATTG 59.091 38.462 0.00 0.00 0.00 2.67
3245 3282 6.823182 TCGAGAAATAATGCTTCCTTGATTGA 59.177 34.615 0.00 0.00 0.00 2.57
3246 3283 7.500227 TCGAGAAATAATGCTTCCTTGATTGAT 59.500 33.333 0.00 0.00 0.00 2.57
3247 3284 8.777413 CGAGAAATAATGCTTCCTTGATTGATA 58.223 33.333 0.00 0.00 0.00 2.15
3248 3285 9.890352 GAGAAATAATGCTTCCTTGATTGATAC 57.110 33.333 0.00 0.00 0.00 2.24
3252 3289 9.851686 AATAATGCTTCCTTGATTGATACTACA 57.148 29.630 0.00 0.00 0.00 2.74
3253 3290 7.798596 AATGCTTCCTTGATTGATACTACAG 57.201 36.000 0.00 0.00 0.00 2.74
3259 3296 6.673583 TCCTTGATTGATACTACAGGAGAGA 58.326 40.000 0.00 0.00 0.00 3.10
3261 3298 6.015519 CCTTGATTGATACTACAGGAGAGAGG 60.016 46.154 0.00 0.00 0.00 3.69
3262 3299 5.389520 TGATTGATACTACAGGAGAGAGGG 58.610 45.833 0.00 0.00 0.00 4.30
3269 3306 1.988956 CAGGAGAGAGGGCTGCAGT 60.989 63.158 16.64 0.00 0.00 4.40
3276 3313 0.036022 AGAGGGCTGCAGTTCTGAAC 59.964 55.000 16.64 12.54 0.00 3.18
3285 3322 3.461061 TGCAGTTCTGAACTCTCAACAG 58.539 45.455 19.65 8.49 40.46 3.16
3292 3329 3.005897 TCTGAACTCTCAACAGTAGCCAC 59.994 47.826 0.00 0.00 33.93 5.01
3293 3330 2.698274 TGAACTCTCAACAGTAGCCACA 59.302 45.455 0.00 0.00 0.00 4.17
3294 3331 3.243873 TGAACTCTCAACAGTAGCCACAG 60.244 47.826 0.00 0.00 0.00 3.66
3295 3332 2.598565 ACTCTCAACAGTAGCCACAGA 58.401 47.619 0.00 0.00 0.00 3.41
3296 3333 3.169099 ACTCTCAACAGTAGCCACAGAT 58.831 45.455 0.00 0.00 0.00 2.90
3297 3334 3.056250 ACTCTCAACAGTAGCCACAGATG 60.056 47.826 0.00 0.00 0.00 2.90
3298 3335 2.899900 TCTCAACAGTAGCCACAGATGT 59.100 45.455 0.00 0.00 0.00 3.06
3299 3336 3.324846 TCTCAACAGTAGCCACAGATGTT 59.675 43.478 0.00 0.00 34.56 2.71
3300 3337 4.067896 CTCAACAGTAGCCACAGATGTTT 58.932 43.478 0.00 0.00 32.01 2.83
3301 3338 5.011635 TCTCAACAGTAGCCACAGATGTTTA 59.988 40.000 0.00 0.00 32.01 2.01
3302 3339 5.804639 TCAACAGTAGCCACAGATGTTTAT 58.195 37.500 0.00 0.00 32.01 1.40
3303 3340 6.941857 TCAACAGTAGCCACAGATGTTTATA 58.058 36.000 0.00 0.00 32.01 0.98
3304 3341 7.390823 TCAACAGTAGCCACAGATGTTTATAA 58.609 34.615 0.00 0.00 32.01 0.98
3305 3342 7.880713 TCAACAGTAGCCACAGATGTTTATAAA 59.119 33.333 0.00 0.00 32.01 1.40
3361 3550 5.751586 TGATTAATTAGCCGGTTCTTCCTT 58.248 37.500 1.90 0.00 0.00 3.36
3423 3612 0.323725 AAGCAAATCATCCGCCCACT 60.324 50.000 0.00 0.00 0.00 4.00
3454 3643 6.432162 TGATCTGATTCTTCTTTCTTGGGTTG 59.568 38.462 0.00 0.00 0.00 3.77
3460 3649 4.855340 TCTTCTTTCTTGGGTTGTGTCTT 58.145 39.130 0.00 0.00 0.00 3.01
3470 3659 2.297701 GGTTGTGTCTTGGAAAGCTCA 58.702 47.619 0.00 0.00 45.70 4.26
3494 3683 9.991906 TCAAAAGCTGTAGTACTACACTAATTT 57.008 29.630 27.99 21.56 41.45 1.82
3607 3797 5.721480 TCAATCTCTGATCTGGGTTGTTAGA 59.279 40.000 0.00 0.00 0.00 2.10
3608 3798 6.385176 TCAATCTCTGATCTGGGTTGTTAGAT 59.615 38.462 0.00 0.00 36.41 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.337264 AAGATAAAAGTGGATGGGGCTT 57.663 40.909 0.00 0.00 0.00 4.35
91 92 4.655647 ACAGGGCCTGTGCAGCAG 62.656 66.667 37.24 10.21 43.63 4.24
114 115 3.149196 TGCAAACCCAAGACATCTTCTC 58.851 45.455 0.00 0.00 33.11 2.87
115 116 3.228188 TGCAAACCCAAGACATCTTCT 57.772 42.857 0.00 0.00 33.11 2.85
117 118 3.259123 GGATTGCAAACCCAAGACATCTT 59.741 43.478 14.59 0.00 36.45 2.40
124 125 3.070015 AGTTGAAGGATTGCAAACCCAAG 59.930 43.478 21.09 0.00 23.13 3.61
163 164 4.142182 CCCCAAGCGACACATAATTTCATT 60.142 41.667 0.00 0.00 0.00 2.57
207 208 4.122046 GTTTGCAAAGAGAAAGGCATTGT 58.878 39.130 13.26 0.00 35.98 2.71
216 217 3.498397 GTCGATCTGGTTTGCAAAGAGAA 59.502 43.478 19.66 5.98 0.00 2.87
295 296 0.458260 ACGCAAAAAGGTGGGTGTTC 59.542 50.000 0.00 0.00 42.51 3.18
322 323 3.054878 CGAAGCACTTAACAGTACGGTT 58.945 45.455 15.69 15.69 34.81 4.44
381 382 0.320050 TGTACTCCATTGCAGCGTCA 59.680 50.000 0.00 0.00 0.00 4.35
430 431 1.227734 AACTACGTGTTGCGGCCTT 60.228 52.632 0.00 0.00 46.52 4.35
445 446 4.422073 TGAGAGAAACATGTCCACAACT 57.578 40.909 0.00 0.00 0.00 3.16
448 449 4.622260 TCATGAGAGAAACATGTCCACA 57.378 40.909 0.00 0.00 43.56 4.17
461 462 3.181477 ACTGCGGATCTTCTTCATGAGAG 60.181 47.826 0.00 0.00 35.37 3.20
462 463 2.762887 ACTGCGGATCTTCTTCATGAGA 59.237 45.455 0.00 0.00 0.00 3.27
463 464 3.176552 ACTGCGGATCTTCTTCATGAG 57.823 47.619 0.00 0.00 0.00 2.90
464 465 3.264947 CAACTGCGGATCTTCTTCATGA 58.735 45.455 0.00 0.00 0.00 3.07
465 466 2.353889 CCAACTGCGGATCTTCTTCATG 59.646 50.000 0.00 0.00 0.00 3.07
466 467 2.636830 CCAACTGCGGATCTTCTTCAT 58.363 47.619 0.00 0.00 0.00 2.57
467 468 1.339055 CCCAACTGCGGATCTTCTTCA 60.339 52.381 0.00 0.00 0.00 3.02
468 469 1.066143 TCCCAACTGCGGATCTTCTTC 60.066 52.381 0.00 0.00 0.00 2.87
469 470 0.984230 TCCCAACTGCGGATCTTCTT 59.016 50.000 0.00 0.00 0.00 2.52
470 471 1.134280 CATCCCAACTGCGGATCTTCT 60.134 52.381 0.00 0.00 38.08 2.85
471 472 1.303309 CATCCCAACTGCGGATCTTC 58.697 55.000 0.00 0.00 38.08 2.87
472 473 0.107017 CCATCCCAACTGCGGATCTT 60.107 55.000 0.00 0.00 38.08 2.40
473 474 0.982852 TCCATCCCAACTGCGGATCT 60.983 55.000 0.00 0.00 38.08 2.75
474 475 0.109342 ATCCATCCCAACTGCGGATC 59.891 55.000 0.00 0.00 38.08 3.36
475 476 0.552848 AATCCATCCCAACTGCGGAT 59.447 50.000 0.00 0.00 40.94 4.18
476 477 0.394216 CAATCCATCCCAACTGCGGA 60.394 55.000 0.00 0.00 0.00 5.54
477 478 2.008268 GCAATCCATCCCAACTGCGG 62.008 60.000 0.00 0.00 0.00 5.69
478 479 1.033746 AGCAATCCATCCCAACTGCG 61.034 55.000 0.00 0.00 35.00 5.18
479 480 0.458669 CAGCAATCCATCCCAACTGC 59.541 55.000 0.00 0.00 0.00 4.40
480 481 1.108776 CCAGCAATCCATCCCAACTG 58.891 55.000 0.00 0.00 0.00 3.16
481 482 0.032813 CCCAGCAATCCATCCCAACT 60.033 55.000 0.00 0.00 0.00 3.16
482 483 1.679559 GCCCAGCAATCCATCCCAAC 61.680 60.000 0.00 0.00 0.00 3.77
483 484 1.381599 GCCCAGCAATCCATCCCAA 60.382 57.895 0.00 0.00 0.00 4.12
484 485 2.165643 TTGCCCAGCAATCCATCCCA 62.166 55.000 0.00 0.00 43.99 4.37
485 486 1.381599 TTGCCCAGCAATCCATCCC 60.382 57.895 0.00 0.00 43.99 3.85
486 487 4.360643 TTGCCCAGCAATCCATCC 57.639 55.556 0.00 0.00 43.99 3.51
496 497 0.548031 TTCTATGGAGGCTTGCCCAG 59.452 55.000 8.17 0.00 35.67 4.45
497 498 0.998928 TTTCTATGGAGGCTTGCCCA 59.001 50.000 8.17 0.40 36.79 5.36
498 499 1.212935 TCTTTCTATGGAGGCTTGCCC 59.787 52.381 8.17 0.00 0.00 5.36
499 500 2.717639 TCTTTCTATGGAGGCTTGCC 57.282 50.000 2.97 2.97 0.00 4.52
500 501 5.126061 TCAAAATCTTTCTATGGAGGCTTGC 59.874 40.000 0.00 0.00 0.00 4.01
501 502 6.405176 GGTCAAAATCTTTCTATGGAGGCTTG 60.405 42.308 0.00 0.00 0.00 4.01
502 503 5.654209 GGTCAAAATCTTTCTATGGAGGCTT 59.346 40.000 0.00 0.00 0.00 4.35
503 504 5.044550 AGGTCAAAATCTTTCTATGGAGGCT 60.045 40.000 0.00 0.00 0.00 4.58
504 505 5.196695 AGGTCAAAATCTTTCTATGGAGGC 58.803 41.667 0.00 0.00 0.00 4.70
505 506 6.037610 CGAAGGTCAAAATCTTTCTATGGAGG 59.962 42.308 0.00 0.00 0.00 4.30
506 507 6.818644 TCGAAGGTCAAAATCTTTCTATGGAG 59.181 38.462 0.00 0.00 0.00 3.86
507 508 6.707290 TCGAAGGTCAAAATCTTTCTATGGA 58.293 36.000 0.00 0.00 0.00 3.41
508 509 6.037610 CCTCGAAGGTCAAAATCTTTCTATGG 59.962 42.308 0.00 0.00 0.00 2.74
509 510 6.037610 CCCTCGAAGGTCAAAATCTTTCTATG 59.962 42.308 0.00 0.00 31.93 2.23
510 511 6.116126 CCCTCGAAGGTCAAAATCTTTCTAT 58.884 40.000 0.00 0.00 31.93 1.98
511 512 5.012768 ACCCTCGAAGGTCAAAATCTTTCTA 59.987 40.000 0.00 0.00 33.81 2.10
512 513 4.202472 ACCCTCGAAGGTCAAAATCTTTCT 60.202 41.667 0.00 0.00 33.81 2.52
513 514 4.072839 ACCCTCGAAGGTCAAAATCTTTC 58.927 43.478 0.00 0.00 33.81 2.62
514 515 4.100279 ACCCTCGAAGGTCAAAATCTTT 57.900 40.909 0.00 0.00 33.81 2.52
515 516 3.790089 ACCCTCGAAGGTCAAAATCTT 57.210 42.857 0.00 0.00 33.81 2.40
516 517 6.555360 AGATATACCCTCGAAGGTCAAAATCT 59.445 38.462 9.52 10.56 41.58 2.40
517 518 6.760291 AGATATACCCTCGAAGGTCAAAATC 58.240 40.000 9.52 8.59 41.58 2.17
518 519 6.749036 AGATATACCCTCGAAGGTCAAAAT 57.251 37.500 9.52 0.00 41.58 1.82
519 520 7.343833 ACTTAGATATACCCTCGAAGGTCAAAA 59.656 37.037 9.52 0.00 41.58 2.44
520 521 6.837568 ACTTAGATATACCCTCGAAGGTCAAA 59.162 38.462 9.52 0.00 41.58 2.69
521 522 6.371278 ACTTAGATATACCCTCGAAGGTCAA 58.629 40.000 9.52 0.00 41.58 3.18
522 523 5.950023 ACTTAGATATACCCTCGAAGGTCA 58.050 41.667 9.52 0.00 41.58 4.02
523 524 6.072008 GGAACTTAGATATACCCTCGAAGGTC 60.072 46.154 9.52 0.00 39.75 3.85
524 525 5.774184 GGAACTTAGATATACCCTCGAAGGT 59.226 44.000 11.21 11.21 44.37 3.50
525 526 5.773680 TGGAACTTAGATATACCCTCGAAGG 59.226 44.000 0.00 0.00 31.85 3.46
526 527 6.715718 TCTGGAACTTAGATATACCCTCGAAG 59.284 42.308 0.00 0.00 33.26 3.79
527 528 6.607970 TCTGGAACTTAGATATACCCTCGAA 58.392 40.000 0.00 0.00 0.00 3.71
528 529 6.183361 ACTCTGGAACTTAGATATACCCTCGA 60.183 42.308 0.00 0.00 0.00 4.04
529 530 6.005198 ACTCTGGAACTTAGATATACCCTCG 58.995 44.000 0.00 0.00 0.00 4.63
530 531 7.842887 AACTCTGGAACTTAGATATACCCTC 57.157 40.000 0.00 0.00 0.00 4.30
531 532 7.844779 TGAAACTCTGGAACTTAGATATACCCT 59.155 37.037 0.00 0.00 0.00 4.34
532 533 8.019656 TGAAACTCTGGAACTTAGATATACCC 57.980 38.462 0.00 0.00 0.00 3.69
533 534 9.699703 GATGAAACTCTGGAACTTAGATATACC 57.300 37.037 0.00 0.00 0.00 2.73
534 535 9.699703 GGATGAAACTCTGGAACTTAGATATAC 57.300 37.037 0.00 0.00 0.00 1.47
535 536 9.434275 TGGATGAAACTCTGGAACTTAGATATA 57.566 33.333 0.00 0.00 0.00 0.86
536 537 8.207545 GTGGATGAAACTCTGGAACTTAGATAT 58.792 37.037 0.00 0.00 0.00 1.63
537 538 7.556844 GTGGATGAAACTCTGGAACTTAGATA 58.443 38.462 0.00 0.00 0.00 1.98
538 539 6.410540 GTGGATGAAACTCTGGAACTTAGAT 58.589 40.000 0.00 0.00 0.00 1.98
539 540 5.566826 CGTGGATGAAACTCTGGAACTTAGA 60.567 44.000 0.00 0.00 0.00 2.10
540 541 4.627467 CGTGGATGAAACTCTGGAACTTAG 59.373 45.833 0.00 0.00 0.00 2.18
541 542 4.566004 CGTGGATGAAACTCTGGAACTTA 58.434 43.478 0.00 0.00 0.00 2.24
542 543 3.403038 CGTGGATGAAACTCTGGAACTT 58.597 45.455 0.00 0.00 0.00 2.66
543 544 2.872038 GCGTGGATGAAACTCTGGAACT 60.872 50.000 0.00 0.00 0.00 3.01
544 545 1.464997 GCGTGGATGAAACTCTGGAAC 59.535 52.381 0.00 0.00 0.00 3.62
545 546 1.610624 GGCGTGGATGAAACTCTGGAA 60.611 52.381 0.00 0.00 0.00 3.53
546 547 0.036388 GGCGTGGATGAAACTCTGGA 60.036 55.000 0.00 0.00 0.00 3.86
547 548 0.036010 AGGCGTGGATGAAACTCTGG 60.036 55.000 0.00 0.00 0.00 3.86
548 549 1.466167 CAAGGCGTGGATGAAACTCTG 59.534 52.381 0.00 0.00 0.00 3.35
549 550 1.072331 ACAAGGCGTGGATGAAACTCT 59.928 47.619 5.22 0.00 0.00 3.24
550 551 1.197721 CACAAGGCGTGGATGAAACTC 59.802 52.381 5.22 0.00 42.34 3.01
551 552 1.238439 CACAAGGCGTGGATGAAACT 58.762 50.000 5.22 0.00 42.34 2.66
552 553 3.773117 CACAAGGCGTGGATGAAAC 57.227 52.632 5.22 0.00 42.34 2.78
561 562 0.748005 AGCAAGTCAACACAAGGCGT 60.748 50.000 0.00 0.00 0.00 5.68
562 563 0.317269 CAGCAAGTCAACACAAGGCG 60.317 55.000 0.00 0.00 0.00 5.52
563 564 0.740737 ACAGCAAGTCAACACAAGGC 59.259 50.000 0.00 0.00 0.00 4.35
564 565 3.189287 GGATACAGCAAGTCAACACAAGG 59.811 47.826 0.00 0.00 0.00 3.61
565 566 3.120546 CGGATACAGCAAGTCAACACAAG 60.121 47.826 0.00 0.00 0.00 3.16
566 567 2.805671 CGGATACAGCAAGTCAACACAA 59.194 45.455 0.00 0.00 0.00 3.33
567 568 2.036604 TCGGATACAGCAAGTCAACACA 59.963 45.455 0.00 0.00 0.00 3.72
568 569 2.412089 GTCGGATACAGCAAGTCAACAC 59.588 50.000 0.00 0.00 0.00 3.32
569 570 2.683968 GTCGGATACAGCAAGTCAACA 58.316 47.619 0.00 0.00 0.00 3.33
570 571 1.654105 CGTCGGATACAGCAAGTCAAC 59.346 52.381 0.00 0.00 0.00 3.18
571 572 1.542472 TCGTCGGATACAGCAAGTCAA 59.458 47.619 0.00 0.00 0.00 3.18
572 573 1.170442 TCGTCGGATACAGCAAGTCA 58.830 50.000 0.00 0.00 0.00 3.41
573 574 1.918609 GTTCGTCGGATACAGCAAGTC 59.081 52.381 0.00 0.00 0.00 3.01
574 575 1.403780 GGTTCGTCGGATACAGCAAGT 60.404 52.381 0.00 0.00 0.00 3.16
575 576 1.278238 GGTTCGTCGGATACAGCAAG 58.722 55.000 0.00 0.00 0.00 4.01
576 577 0.604073 TGGTTCGTCGGATACAGCAA 59.396 50.000 0.00 0.00 0.00 3.91
577 578 0.172578 CTGGTTCGTCGGATACAGCA 59.827 55.000 0.00 0.00 0.00 4.41
578 579 0.172803 ACTGGTTCGTCGGATACAGC 59.827 55.000 7.80 0.00 32.54 4.40
579 580 1.202268 GGACTGGTTCGTCGGATACAG 60.202 57.143 6.64 6.64 34.75 2.74
580 581 0.813184 GGACTGGTTCGTCGGATACA 59.187 55.000 0.00 0.00 34.75 2.29
581 582 1.101331 AGGACTGGTTCGTCGGATAC 58.899 55.000 0.00 0.00 34.75 2.24
582 583 1.747355 GAAGGACTGGTTCGTCGGATA 59.253 52.381 0.00 0.00 34.75 2.59
583 584 0.531200 GAAGGACTGGTTCGTCGGAT 59.469 55.000 0.00 0.00 34.75 4.18
584 585 1.530013 GGAAGGACTGGTTCGTCGGA 61.530 60.000 0.00 0.00 34.75 4.55
585 586 1.080025 GGAAGGACTGGTTCGTCGG 60.080 63.158 0.00 0.00 34.75 4.79
586 587 1.080025 GGGAAGGACTGGTTCGTCG 60.080 63.158 0.00 0.00 34.75 5.12
587 588 0.246910 GAGGGAAGGACTGGTTCGTC 59.753 60.000 0.00 0.00 0.00 4.20
588 589 1.533469 CGAGGGAAGGACTGGTTCGT 61.533 60.000 0.00 0.00 0.00 3.85
589 590 1.215647 CGAGGGAAGGACTGGTTCG 59.784 63.158 0.00 0.00 0.00 3.95
590 591 0.533032 CTCGAGGGAAGGACTGGTTC 59.467 60.000 3.91 0.00 0.00 3.62
591 592 1.545706 GCTCGAGGGAAGGACTGGTT 61.546 60.000 15.58 0.00 0.00 3.67
592 593 1.985116 GCTCGAGGGAAGGACTGGT 60.985 63.158 15.58 0.00 0.00 4.00
593 594 2.726351 GGCTCGAGGGAAGGACTGG 61.726 68.421 15.58 0.00 0.00 4.00
594 595 1.544825 TTGGCTCGAGGGAAGGACTG 61.545 60.000 15.58 0.00 0.00 3.51
595 596 1.229209 TTGGCTCGAGGGAAGGACT 60.229 57.895 15.58 0.00 0.00 3.85
596 597 1.219393 CTTGGCTCGAGGGAAGGAC 59.781 63.158 15.58 0.00 0.00 3.85
597 598 2.660064 GCTTGGCTCGAGGGAAGGA 61.660 63.158 15.58 0.00 0.00 3.36
598 599 2.124942 GCTTGGCTCGAGGGAAGG 60.125 66.667 15.58 0.00 0.00 3.46
599 600 2.124942 GGCTTGGCTCGAGGGAAG 60.125 66.667 15.58 0.00 0.00 3.46
600 601 2.607750 AGGCTTGGCTCGAGGGAA 60.608 61.111 15.58 0.00 0.00 3.97
601 602 3.077556 GAGGCTTGGCTCGAGGGA 61.078 66.667 15.58 0.00 0.00 4.20
602 603 3.393970 TGAGGCTTGGCTCGAGGG 61.394 66.667 15.58 0.00 0.00 4.30
603 604 2.125350 GTGAGGCTTGGCTCGAGG 60.125 66.667 15.58 0.00 0.00 4.63
604 605 2.507992 CGTGAGGCTTGGCTCGAG 60.508 66.667 17.27 8.45 0.00 4.04
605 606 3.282745 GACGTGAGGCTTGGCTCGA 62.283 63.158 17.27 6.10 34.96 4.04
606 607 2.811317 GACGTGAGGCTTGGCTCG 60.811 66.667 17.27 10.76 34.96 5.03
607 608 2.435059 GGACGTGAGGCTTGGCTC 60.435 66.667 15.94 15.94 40.87 4.70
608 609 4.021925 GGGACGTGAGGCTTGGCT 62.022 66.667 0.00 0.00 40.87 4.75
609 610 4.329545 TGGGACGTGAGGCTTGGC 62.330 66.667 0.00 0.00 40.87 4.52
610 611 2.046892 CTGGGACGTGAGGCTTGG 60.047 66.667 0.00 0.00 40.87 3.61
611 612 2.738213 AAGCTGGGACGTGAGGCTTG 62.738 60.000 11.88 0.00 40.95 4.01
612 613 2.056906 AAAGCTGGGACGTGAGGCTT 62.057 55.000 0.00 0.23 43.75 4.35
613 614 2.520536 AAAGCTGGGACGTGAGGCT 61.521 57.895 0.00 0.00 40.87 4.58
614 615 2.032681 AAAGCTGGGACGTGAGGC 59.967 61.111 0.00 0.00 39.70 4.70
615 616 1.071471 ACAAAGCTGGGACGTGAGG 59.929 57.895 0.00 0.00 0.00 3.86
616 617 0.532862 ACACAAAGCTGGGACGTGAG 60.533 55.000 0.00 0.00 0.00 3.51
617 618 0.531974 GACACAAAGCTGGGACGTGA 60.532 55.000 0.00 0.00 0.00 4.35
618 619 0.813610 TGACACAAAGCTGGGACGTG 60.814 55.000 0.00 0.00 0.00 4.49
619 620 0.107410 TTGACACAAAGCTGGGACGT 60.107 50.000 0.00 0.00 0.00 4.34
620 621 1.069022 CATTGACACAAAGCTGGGACG 60.069 52.381 0.00 0.00 0.00 4.79
621 622 2.227388 CTCATTGACACAAAGCTGGGAC 59.773 50.000 0.00 0.00 0.00 4.46
622 623 2.507484 CTCATTGACACAAAGCTGGGA 58.493 47.619 0.00 0.00 0.00 4.37
623 624 1.068055 GCTCATTGACACAAAGCTGGG 60.068 52.381 0.00 0.00 0.00 4.45
624 625 1.610038 TGCTCATTGACACAAAGCTGG 59.390 47.619 0.00 0.00 34.11 4.85
625 626 3.570926 ATGCTCATTGACACAAAGCTG 57.429 42.857 0.00 0.00 34.11 4.24
626 627 3.125829 CGTATGCTCATTGACACAAAGCT 59.874 43.478 0.00 0.00 34.11 3.74
627 628 3.419915 CGTATGCTCATTGACACAAAGC 58.580 45.455 0.00 0.00 0.00 3.51
628 629 3.436704 ACCGTATGCTCATTGACACAAAG 59.563 43.478 0.00 0.00 0.00 2.77
629 630 3.407698 ACCGTATGCTCATTGACACAAA 58.592 40.909 0.00 0.00 0.00 2.83
630 631 3.052455 ACCGTATGCTCATTGACACAA 57.948 42.857 0.00 0.00 0.00 3.33
631 632 2.760634 ACCGTATGCTCATTGACACA 57.239 45.000 0.00 0.00 0.00 3.72
632 633 3.123804 CCTACCGTATGCTCATTGACAC 58.876 50.000 0.00 0.00 0.00 3.67
633 634 2.483013 GCCTACCGTATGCTCATTGACA 60.483 50.000 0.00 0.00 0.00 3.58
634 635 2.135933 GCCTACCGTATGCTCATTGAC 58.864 52.381 0.00 0.00 0.00 3.18
635 636 1.070134 GGCCTACCGTATGCTCATTGA 59.930 52.381 0.00 0.00 0.00 2.57
636 637 1.512926 GGCCTACCGTATGCTCATTG 58.487 55.000 0.00 0.00 0.00 2.82
648 649 0.030908 CTCAGTTCGATCGGCCTACC 59.969 60.000 16.41 0.00 0.00 3.18
649 650 1.022735 TCTCAGTTCGATCGGCCTAC 58.977 55.000 16.41 8.66 0.00 3.18
650 651 1.676529 CTTCTCAGTTCGATCGGCCTA 59.323 52.381 16.41 0.00 0.00 3.93
651 652 0.457851 CTTCTCAGTTCGATCGGCCT 59.542 55.000 16.41 8.44 0.00 5.19
652 653 0.528684 CCTTCTCAGTTCGATCGGCC 60.529 60.000 16.41 6.04 0.00 6.13
653 654 0.173708 ACCTTCTCAGTTCGATCGGC 59.826 55.000 16.41 8.84 0.00 5.54
654 655 2.531206 GAACCTTCTCAGTTCGATCGG 58.469 52.381 16.41 0.00 34.76 4.18
655 656 2.531206 GGAACCTTCTCAGTTCGATCG 58.469 52.381 9.36 9.36 43.70 3.69
656 657 2.094649 ACGGAACCTTCTCAGTTCGATC 60.095 50.000 0.00 0.00 43.70 3.69
657 658 1.893801 ACGGAACCTTCTCAGTTCGAT 59.106 47.619 0.00 0.00 43.70 3.59
658 659 1.325355 ACGGAACCTTCTCAGTTCGA 58.675 50.000 0.00 0.00 43.70 3.71
659 660 2.059541 GAACGGAACCTTCTCAGTTCG 58.940 52.381 1.82 0.00 43.70 3.95
660 661 3.388345 AGAACGGAACCTTCTCAGTTC 57.612 47.619 8.09 8.09 42.36 3.01
661 662 3.840124 AAGAACGGAACCTTCTCAGTT 57.160 42.857 0.00 0.00 0.00 3.16
662 663 3.840124 AAAGAACGGAACCTTCTCAGT 57.160 42.857 0.00 0.00 0.00 3.41
663 664 4.127171 TGAAAAGAACGGAACCTTCTCAG 58.873 43.478 0.00 0.00 0.00 3.35
664 665 4.145365 TGAAAAGAACGGAACCTTCTCA 57.855 40.909 0.00 0.00 0.00 3.27
665 666 4.515567 ACATGAAAAGAACGGAACCTTCTC 59.484 41.667 0.00 0.00 0.00 2.87
666 667 4.461198 ACATGAAAAGAACGGAACCTTCT 58.539 39.130 0.00 0.00 0.00 2.85
667 668 4.830826 ACATGAAAAGAACGGAACCTTC 57.169 40.909 0.00 0.00 0.00 3.46
668 669 4.517832 GGTACATGAAAAGAACGGAACCTT 59.482 41.667 0.00 0.00 0.00 3.50
669 670 4.070009 GGTACATGAAAAGAACGGAACCT 58.930 43.478 0.00 0.00 0.00 3.50
670 671 3.189910 GGGTACATGAAAAGAACGGAACC 59.810 47.826 0.00 0.00 0.00 3.62
671 672 3.816523 TGGGTACATGAAAAGAACGGAAC 59.183 43.478 0.00 0.00 0.00 3.62
672 673 3.816523 GTGGGTACATGAAAAGAACGGAA 59.183 43.478 0.00 0.00 0.00 4.30
673 674 3.404899 GTGGGTACATGAAAAGAACGGA 58.595 45.455 0.00 0.00 0.00 4.69
674 675 2.158841 CGTGGGTACATGAAAAGAACGG 59.841 50.000 0.00 0.00 35.58 4.44
675 676 3.061322 TCGTGGGTACATGAAAAGAACG 58.939 45.455 0.00 2.53 39.59 3.95
676 677 3.187842 GGTCGTGGGTACATGAAAAGAAC 59.812 47.826 0.00 0.00 43.81 3.01
677 678 3.181453 TGGTCGTGGGTACATGAAAAGAA 60.181 43.478 0.00 0.00 43.81 2.52
678 679 2.369203 TGGTCGTGGGTACATGAAAAGA 59.631 45.455 0.00 0.00 43.81 2.52
679 680 2.742053 CTGGTCGTGGGTACATGAAAAG 59.258 50.000 0.00 0.00 43.81 2.27
680 681 2.369203 TCTGGTCGTGGGTACATGAAAA 59.631 45.455 0.00 0.00 43.81 2.29
681 682 1.972075 TCTGGTCGTGGGTACATGAAA 59.028 47.619 0.00 0.00 43.81 2.69
682 683 1.634960 TCTGGTCGTGGGTACATGAA 58.365 50.000 0.00 0.00 43.81 2.57
683 684 1.548719 CTTCTGGTCGTGGGTACATGA 59.451 52.381 0.00 0.00 40.22 3.07
684 685 1.275291 ACTTCTGGTCGTGGGTACATG 59.725 52.381 0.00 0.00 34.86 3.21
685 686 1.549170 GACTTCTGGTCGTGGGTACAT 59.451 52.381 0.00 0.00 35.07 2.29
686 687 0.963962 GACTTCTGGTCGTGGGTACA 59.036 55.000 0.00 0.00 35.07 2.90
687 688 0.245813 GGACTTCTGGTCGTGGGTAC 59.754 60.000 0.00 0.00 45.35 3.34
688 689 0.113776 AGGACTTCTGGTCGTGGGTA 59.886 55.000 0.00 0.00 45.35 3.69
689 690 1.152312 AGGACTTCTGGTCGTGGGT 60.152 57.895 0.00 0.00 45.35 4.51
690 691 0.900647 AGAGGACTTCTGGTCGTGGG 60.901 60.000 0.00 0.00 45.35 4.61
691 692 1.835494 TAGAGGACTTCTGGTCGTGG 58.165 55.000 0.00 0.00 45.35 4.94
692 693 4.580995 ACATATAGAGGACTTCTGGTCGTG 59.419 45.833 0.00 0.00 45.35 4.35
693 694 4.794334 ACATATAGAGGACTTCTGGTCGT 58.206 43.478 0.00 0.00 45.35 4.34
694 695 5.067273 AGACATATAGAGGACTTCTGGTCG 58.933 45.833 0.00 0.00 45.35 4.79
695 696 6.322712 ACAAGACATATAGAGGACTTCTGGTC 59.677 42.308 0.00 0.85 43.79 4.02
696 697 6.097554 CACAAGACATATAGAGGACTTCTGGT 59.902 42.308 0.00 0.00 36.61 4.00
697 698 6.511416 CACAAGACATATAGAGGACTTCTGG 58.489 44.000 0.00 0.00 36.61 3.86
698 699 5.982516 GCACAAGACATATAGAGGACTTCTG 59.017 44.000 0.00 0.00 36.61 3.02
699 700 5.658634 TGCACAAGACATATAGAGGACTTCT 59.341 40.000 0.00 0.00 40.06 2.85
700 701 5.907207 TGCACAAGACATATAGAGGACTTC 58.093 41.667 0.00 0.00 0.00 3.01
701 702 5.939764 TGCACAAGACATATAGAGGACTT 57.060 39.130 0.00 0.00 0.00 3.01
702 703 6.210385 CCTATGCACAAGACATATAGAGGACT 59.790 42.308 0.00 0.00 29.96 3.85
703 704 6.393990 CCTATGCACAAGACATATAGAGGAC 58.606 44.000 0.00 0.00 29.96 3.85
704 705 5.481824 CCCTATGCACAAGACATATAGAGGA 59.518 44.000 0.00 0.00 29.96 3.71
705 706 5.337894 CCCCTATGCACAAGACATATAGAGG 60.338 48.000 0.00 0.00 29.96 3.69
706 707 5.481824 TCCCCTATGCACAAGACATATAGAG 59.518 44.000 0.00 0.00 29.96 2.43
707 708 5.402630 TCCCCTATGCACAAGACATATAGA 58.597 41.667 0.00 0.00 29.96 1.98
708 709 5.745312 TCCCCTATGCACAAGACATATAG 57.255 43.478 0.00 0.00 29.96 1.31
709 710 6.702449 ATTCCCCTATGCACAAGACATATA 57.298 37.500 0.00 0.00 29.96 0.86
710 711 5.589367 ATTCCCCTATGCACAAGACATAT 57.411 39.130 0.00 0.00 29.96 1.78
711 712 5.104151 TCAATTCCCCTATGCACAAGACATA 60.104 40.000 0.00 0.00 0.00 2.29
712 713 3.956199 CAATTCCCCTATGCACAAGACAT 59.044 43.478 0.00 0.00 0.00 3.06
713 714 3.010027 TCAATTCCCCTATGCACAAGACA 59.990 43.478 0.00 0.00 0.00 3.41
714 715 3.378427 GTCAATTCCCCTATGCACAAGAC 59.622 47.826 0.00 0.00 0.00 3.01
715 716 3.010027 TGTCAATTCCCCTATGCACAAGA 59.990 43.478 0.00 0.00 0.00 3.02
716 717 3.355378 TGTCAATTCCCCTATGCACAAG 58.645 45.455 0.00 0.00 0.00 3.16
717 718 3.010027 TCTGTCAATTCCCCTATGCACAA 59.990 43.478 0.00 0.00 0.00 3.33
718 719 2.575735 TCTGTCAATTCCCCTATGCACA 59.424 45.455 0.00 0.00 0.00 4.57
719 720 3.281727 TCTGTCAATTCCCCTATGCAC 57.718 47.619 0.00 0.00 0.00 4.57
720 721 4.209538 CATTCTGTCAATTCCCCTATGCA 58.790 43.478 0.00 0.00 0.00 3.96
721 722 3.571401 CCATTCTGTCAATTCCCCTATGC 59.429 47.826 0.00 0.00 0.00 3.14
722 723 4.796606 ACCATTCTGTCAATTCCCCTATG 58.203 43.478 0.00 0.00 0.00 2.23
723 724 5.472301 AACCATTCTGTCAATTCCCCTAT 57.528 39.130 0.00 0.00 0.00 2.57
724 725 4.946160 AACCATTCTGTCAATTCCCCTA 57.054 40.909 0.00 0.00 0.00 3.53
725 726 3.833559 AACCATTCTGTCAATTCCCCT 57.166 42.857 0.00 0.00 0.00 4.79
726 727 3.831911 TCAAACCATTCTGTCAATTCCCC 59.168 43.478 0.00 0.00 0.00 4.81
727 728 4.619160 GCTCAAACCATTCTGTCAATTCCC 60.619 45.833 0.00 0.00 0.00 3.97
728 729 4.022068 TGCTCAAACCATTCTGTCAATTCC 60.022 41.667 0.00 0.00 0.00 3.01
729 730 5.125100 TGCTCAAACCATTCTGTCAATTC 57.875 39.130 0.00 0.00 0.00 2.17
730 731 5.302568 TCTTGCTCAAACCATTCTGTCAATT 59.697 36.000 0.00 0.00 0.00 2.32
731 732 4.828939 TCTTGCTCAAACCATTCTGTCAAT 59.171 37.500 0.00 0.00 0.00 2.57
732 733 4.206375 TCTTGCTCAAACCATTCTGTCAA 58.794 39.130 0.00 0.00 0.00 3.18
733 734 3.817084 CTCTTGCTCAAACCATTCTGTCA 59.183 43.478 0.00 0.00 0.00 3.58
734 735 3.365767 GCTCTTGCTCAAACCATTCTGTC 60.366 47.826 0.00 0.00 36.03 3.51
735 736 2.555757 GCTCTTGCTCAAACCATTCTGT 59.444 45.455 0.00 0.00 36.03 3.41
736 737 2.555325 TGCTCTTGCTCAAACCATTCTG 59.445 45.455 0.00 0.00 40.48 3.02
737 738 2.818432 CTGCTCTTGCTCAAACCATTCT 59.182 45.455 0.00 0.00 40.48 2.40
738 739 2.670509 GCTGCTCTTGCTCAAACCATTC 60.671 50.000 0.00 0.00 40.48 2.67
739 740 1.271656 GCTGCTCTTGCTCAAACCATT 59.728 47.619 0.00 0.00 40.48 3.16
740 741 0.886563 GCTGCTCTTGCTCAAACCAT 59.113 50.000 0.00 0.00 40.48 3.55
741 742 0.179009 AGCTGCTCTTGCTCAAACCA 60.179 50.000 0.00 0.00 40.48 3.67
742 743 1.813513 TAGCTGCTCTTGCTCAAACC 58.186 50.000 4.91 0.00 41.46 3.27
743 744 4.431661 AAATAGCTGCTCTTGCTCAAAC 57.568 40.909 4.91 0.00 41.46 2.93
744 745 4.801891 CAAAATAGCTGCTCTTGCTCAAA 58.198 39.130 4.91 0.00 41.46 2.69
745 746 3.366679 GCAAAATAGCTGCTCTTGCTCAA 60.367 43.478 24.91 2.59 41.46 3.02
746 747 2.163010 GCAAAATAGCTGCTCTTGCTCA 59.837 45.455 24.91 3.23 41.46 4.26
747 748 2.795117 GCAAAATAGCTGCTCTTGCTC 58.205 47.619 24.91 8.08 41.46 4.26
748 749 2.935481 GCAAAATAGCTGCTCTTGCT 57.065 45.000 24.91 6.75 43.79 3.91
761 762 5.535753 AAAAGCTCAACCACTAGCAAAAT 57.464 34.783 0.00 0.00 41.32 1.82
786 787 4.889409 ACCTCTTGCAATTCTTCTCACAAA 59.111 37.500 0.00 0.00 0.00 2.83
789 790 4.320788 CCAACCTCTTGCAATTCTTCTCAC 60.321 45.833 0.00 0.00 0.00 3.51
803 804 0.037447 GCAGAGAAGCCCAACCTCTT 59.963 55.000 0.00 0.00 35.28 2.85
812 813 0.733729 CTCTTGCATGCAGAGAAGCC 59.266 55.000 28.60 0.00 31.79 4.35
836 838 2.897969 CCGGGCTGTATCACTACCTATT 59.102 50.000 0.00 0.00 0.00 1.73
839 841 1.400530 GCCGGGCTGTATCACTACCT 61.401 60.000 12.87 0.00 0.00 3.08
841 843 1.069258 GGCCGGGCTGTATCACTAC 59.931 63.158 22.87 0.00 0.00 2.73
843 845 3.480133 GGGCCGGGCTGTATCACT 61.480 66.667 28.80 0.00 0.00 3.41
890 892 4.072131 GGTTCAGGCTGTAGTCATTTCAA 58.928 43.478 15.27 0.00 0.00 2.69
891 893 3.559171 GGGTTCAGGCTGTAGTCATTTCA 60.559 47.826 15.27 0.00 0.00 2.69
895 897 1.656587 TGGGTTCAGGCTGTAGTCAT 58.343 50.000 15.27 0.00 0.00 3.06
896 898 1.555075 GATGGGTTCAGGCTGTAGTCA 59.445 52.381 15.27 9.72 0.00 3.41
897 899 1.471676 CGATGGGTTCAGGCTGTAGTC 60.472 57.143 15.27 4.25 0.00 2.59
997 1018 0.252881 TTGAGGAGGAGAGCCATGGT 60.253 55.000 14.67 0.00 36.29 3.55
1041 1062 3.532155 CGGAGAAGGAGGCGGGAG 61.532 72.222 0.00 0.00 0.00 4.30
1147 1168 2.665000 CAGGAGCTTGGCTTCCGA 59.335 61.111 0.00 0.00 39.88 4.55
1249 1270 3.119096 GGTGGAAGAGAACGCGGC 61.119 66.667 12.47 1.16 0.00 6.53
1476 1497 1.291877 GCATTTCGTCGAGCAGGTGT 61.292 55.000 0.00 0.00 0.00 4.16
1578 1599 2.257371 CGACGGAACAGCTCGGAA 59.743 61.111 0.00 0.00 0.00 4.30
1641 1662 1.141449 CAGCGCTCCAAGGAGAGAG 59.859 63.158 21.78 11.89 43.22 3.20
1785 1806 2.358003 GCGAACACCTGCTCTGCT 60.358 61.111 0.00 0.00 0.00 4.24
2085 2106 1.073897 GTCAAGGTTGCTCTGCCCT 59.926 57.895 0.00 0.00 0.00 5.19
2208 2229 1.804151 TCATACAACTTTCGTGCAGCC 59.196 47.619 0.00 0.00 0.00 4.85
2217 2238 3.440173 CCTGCATCCGTTCATACAACTTT 59.560 43.478 0.00 0.00 0.00 2.66
2221 2242 2.905075 CTCCTGCATCCGTTCATACAA 58.095 47.619 0.00 0.00 0.00 2.41
2226 2247 1.078918 CAGCTCCTGCATCCGTTCA 60.079 57.895 0.00 0.00 42.74 3.18
2275 2296 8.044060 TCCTTATTGAACAACTTCATAAGCAG 57.956 34.615 0.00 0.00 36.26 4.24
2383 2404 4.141937 CCTCCCACAGAATGACTCGATTAA 60.142 45.833 0.00 0.00 39.69 1.40
2448 2469 4.827284 GTGGGTTTCAAAGATTTCTCCTCA 59.173 41.667 0.00 0.00 0.00 3.86
2460 2481 1.028905 CTGGCTTCGTGGGTTTCAAA 58.971 50.000 0.00 0.00 0.00 2.69
2548 2569 3.455469 GCCCCTGTCAGCCATTGC 61.455 66.667 0.00 0.00 37.95 3.56
2592 2613 2.907910 CAGCTACTGCATTCCACAAC 57.092 50.000 0.00 0.00 42.74 3.32
2823 2845 0.034186 TGTGCCTGGCCCTCTATTTG 60.034 55.000 17.53 0.00 0.00 2.32
2824 2846 0.929244 ATGTGCCTGGCCCTCTATTT 59.071 50.000 17.53 0.00 0.00 1.40
2897 2919 1.069636 CAGGAAGCGAGCAGAAAACAC 60.070 52.381 0.00 0.00 0.00 3.32
2974 2996 3.832527 AGGATACAACACACCAGCTTTT 58.167 40.909 0.00 0.00 41.41 2.27
2978 3005 3.611766 ACTAGGATACAACACACCAGC 57.388 47.619 0.00 0.00 41.41 4.85
3015 3042 7.867305 TCTATCAGTGTTACTAAGGAGACAG 57.133 40.000 0.00 0.00 0.00 3.51
3019 3046 9.319143 CCAATTTCTATCAGTGTTACTAAGGAG 57.681 37.037 0.00 0.00 0.00 3.69
3030 3057 6.480524 TCGAAACACCAATTTCTATCAGTG 57.519 37.500 0.00 0.00 36.59 3.66
3157 3185 7.332926 CAGATTGCACTTCAATAACAGTCTAGT 59.667 37.037 0.00 0.00 44.95 2.57
3196 3224 7.223193 CGACGAGGGAATACAACATATAACAAA 59.777 37.037 0.00 0.00 0.00 2.83
3197 3225 6.698329 CGACGAGGGAATACAACATATAACAA 59.302 38.462 0.00 0.00 0.00 2.83
3199 3227 6.441274 TCGACGAGGGAATACAACATATAAC 58.559 40.000 0.00 0.00 0.00 1.89
3200 3228 6.487668 TCTCGACGAGGGAATACAACATATAA 59.512 38.462 23.92 0.00 0.00 0.98
3202 3230 4.825634 TCTCGACGAGGGAATACAACATAT 59.174 41.667 23.92 0.00 0.00 1.78
3212 3249 3.132289 AGCATTATTTCTCGACGAGGGAA 59.868 43.478 23.92 18.34 37.61 3.97
3214 3251 3.099267 AGCATTATTTCTCGACGAGGG 57.901 47.619 23.92 1.05 0.00 4.30
3215 3252 3.491267 GGAAGCATTATTTCTCGACGAGG 59.509 47.826 23.92 7.75 0.00 4.63
3219 3256 6.610741 ATCAAGGAAGCATTATTTCTCGAC 57.389 37.500 0.00 0.00 0.00 4.20
3244 3281 3.153919 CAGCCCTCTCTCCTGTAGTATC 58.846 54.545 0.00 0.00 0.00 2.24
3245 3282 2.754867 GCAGCCCTCTCTCCTGTAGTAT 60.755 54.545 0.00 0.00 0.00 2.12
3246 3283 1.410365 GCAGCCCTCTCTCCTGTAGTA 60.410 57.143 0.00 0.00 0.00 1.82
3247 3284 0.686112 GCAGCCCTCTCTCCTGTAGT 60.686 60.000 0.00 0.00 0.00 2.73
3248 3285 0.685785 TGCAGCCCTCTCTCCTGTAG 60.686 60.000 0.00 0.00 0.00 2.74
3252 3289 1.229464 AACTGCAGCCCTCTCTCCT 60.229 57.895 15.27 0.00 0.00 3.69
3253 3290 1.220477 GAACTGCAGCCCTCTCTCC 59.780 63.158 15.27 0.00 0.00 3.71
3259 3296 0.036022 GAGTTCAGAACTGCAGCCCT 59.964 55.000 21.00 8.23 43.03 5.19
3261 3298 1.270518 TGAGAGTTCAGAACTGCAGCC 60.271 52.381 21.00 6.07 43.03 4.85
3262 3299 2.160822 TGAGAGTTCAGAACTGCAGC 57.839 50.000 21.00 6.10 43.03 5.25
3269 3306 3.641436 TGGCTACTGTTGAGAGTTCAGAA 59.359 43.478 0.00 0.00 34.15 3.02
3276 3313 3.056250 ACATCTGTGGCTACTGTTGAGAG 60.056 47.826 20.01 0.93 32.78 3.20
3285 3322 7.247929 GAGGTTTATAAACATCTGTGGCTAC 57.752 40.000 27.41 9.35 43.95 3.58
3361 3550 3.243839 GCTTTCCAAAACATGCCAGAAGA 60.244 43.478 0.00 0.00 0.00 2.87
3417 3606 1.195115 TCAGATCAGGTACAGTGGGC 58.805 55.000 0.00 0.00 0.00 5.36
3418 3607 3.708631 AGAATCAGATCAGGTACAGTGGG 59.291 47.826 0.00 0.00 0.00 4.61
3423 3612 7.487822 AGAAAGAAGAATCAGATCAGGTACA 57.512 36.000 0.00 0.00 0.00 2.90
3454 3643 3.067320 AGCTTTTGAGCTTTCCAAGACAC 59.933 43.478 0.00 0.00 43.52 3.67
3460 3649 3.820557 ACTACAGCTTTTGAGCTTTCCA 58.179 40.909 0.00 0.00 43.52 3.53
3470 3659 9.216117 CCAAATTAGTGTAGTACTACAGCTTTT 57.784 33.333 31.32 23.55 45.61 2.27
3494 3683 0.250727 GGTACTGCTTTGCTCCACCA 60.251 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.