Multiple sequence alignment - TraesCS5B01G335500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G335500 chr5B 100.000 7907 0 0 1 7907 518686316 518678410 0.000000e+00 14602.0
1 TraesCS5B01G335500 chr5B 83.766 308 25 8 7388 7695 518672732 518672450 1.310000e-67 268.0
2 TraesCS5B01G335500 chr5B 94.545 55 3 0 7266 7320 518678472 518678418 1.410000e-12 86.1
3 TraesCS5B01G335500 chr5B 94.545 55 3 0 7845 7899 518679051 518678997 1.410000e-12 86.1
4 TraesCS5B01G335500 chr5A 94.092 4147 190 29 1161 5284 545217941 545213827 0.000000e+00 6250.0
5 TraesCS5B01G335500 chr5A 91.267 2359 100 47 5355 7644 545213818 545211497 0.000000e+00 3118.0
6 TraesCS5B01G335500 chr5A 89.095 486 21 11 712 1171 545218634 545218155 6.880000e-160 575.0
7 TraesCS5B01G335500 chr5A 92.857 56 3 1 7845 7900 545211859 545211805 6.580000e-11 80.5
8 TraesCS5B01G335500 chr5D 95.051 3839 174 10 1454 5284 429359159 429355329 0.000000e+00 6023.0
9 TraesCS5B01G335500 chr5D 93.988 998 33 14 5355 6326 429355320 429354324 0.000000e+00 1485.0
10 TraesCS5B01G335500 chr5D 88.734 1145 72 25 314 1425 429360278 429359158 0.000000e+00 1347.0
11 TraesCS5B01G335500 chr5D 96.494 542 17 1 6341 6880 429354339 429353798 0.000000e+00 894.0
12 TraesCS5B01G335500 chr5D 88.973 662 52 13 7246 7899 429353117 429352469 0.000000e+00 798.0
13 TraesCS5B01G335500 chr5D 88.378 370 29 5 6927 7287 429353529 429353165 4.380000e-117 433.0
14 TraesCS5B01G335500 chr5D 90.596 319 24 2 1 313 398093187 398092869 1.230000e-112 418.0
15 TraesCS5B01G335500 chr5D 82.898 421 41 18 7262 7682 429352526 429352137 4.540000e-92 350.0
16 TraesCS5B01G335500 chr5D 96.610 59 2 0 6871 6929 429353779 429353721 1.820000e-16 99.0
17 TraesCS5B01G335500 chr5D 96.364 55 2 0 7845 7899 429353097 429353043 3.040000e-14 91.6
18 TraesCS5B01G335500 chr2D 93.312 314 20 1 1 314 13564247 13564559 5.590000e-126 462.0
19 TraesCS5B01G335500 chr2D 93.103 58 1 3 7377 7432 5304841 5304785 1.830000e-11 82.4
20 TraesCS5B01G335500 chr3D 92.357 314 22 2 1 313 596608827 596608515 5.630000e-121 446.0
21 TraesCS5B01G335500 chr3D 100.000 30 0 0 7478 7507 522121810 522121781 1.000000e-03 56.5
22 TraesCS5B01G335500 chr2A 91.026 312 25 3 3 313 750994824 750994515 1.230000e-112 418.0
23 TraesCS5B01G335500 chr2A 90.099 101 1 4 4232 4323 615291579 615291479 1.080000e-23 122.0
24 TraesCS5B01G335500 chr2A 81.250 96 12 4 7338 7432 274037 273947 1.100000e-08 73.1
25 TraesCS5B01G335500 chr6D 89.809 314 29 2 1 313 85453373 85453684 4.450000e-107 399.0
26 TraesCS5B01G335500 chr6D 90.909 55 3 2 7378 7432 6481667 6481615 1.100000e-08 73.1
27 TraesCS5B01G335500 chr2B 89.538 325 21 4 1 313 556477697 556478020 4.450000e-107 399.0
28 TraesCS5B01G335500 chr2B 88.308 325 18 9 1 313 795628016 795627700 9.690000e-99 372.0
29 TraesCS5B01G335500 chr3B 89.441 322 20 5 3 312 781399166 781398847 2.070000e-105 394.0
30 TraesCS5B01G335500 chr3B 76.596 141 25 7 7368 7502 556719891 556719753 3.960000e-08 71.3
31 TraesCS5B01G335500 chr3B 86.364 66 7 2 7368 7432 781116945 781117009 3.960000e-08 71.3
32 TraesCS5B01G335500 chr6B 94.180 189 11 0 126 314 34112041 34111853 1.000000e-73 289.0
33 TraesCS5B01G335500 chr6B 93.701 127 8 0 1 127 34112484 34112358 2.910000e-44 191.0
34 TraesCS5B01G335500 chr7D 92.021 188 13 2 126 313 638032721 638032536 6.080000e-66 263.0
35 TraesCS5B01G335500 chr7D 100.000 29 0 0 7023 7051 552272135 552272107 4.000000e-03 54.7
36 TraesCS5B01G335500 chr7A 90.769 65 6 0 1 65 417461765 417461701 3.930000e-13 87.9
37 TraesCS5B01G335500 chr6A 90.909 55 3 2 7378 7432 5931472 5931420 1.100000e-08 73.1
38 TraesCS5B01G335500 chr1B 83.333 78 8 5 7357 7432 170015210 170015284 5.120000e-07 67.6
39 TraesCS5B01G335500 chr1B 100.000 29 0 0 7023 7051 667639722 667639750 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G335500 chr5B 518678410 518686316 7906 True 14602.000000 14602 100.000000 1 7907 1 chr5B.!!$R2 7906
1 TraesCS5B01G335500 chr5A 545211497 545218634 7137 True 2505.875000 6250 91.827750 712 7900 4 chr5A.!!$R1 7188
2 TraesCS5B01G335500 chr5D 429352137 429360278 8141 True 1280.066667 6023 91.943333 314 7899 9 chr5D.!!$R2 7585
3 TraesCS5B01G335500 chr6B 34111853 34112484 631 True 240.000000 289 93.940500 1 314 2 chr6B.!!$R1 313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 599 0.033228 CATGGCTTTGGTTTTCCGCA 59.967 50.000 0.00 0.00 44.36 5.69 F
808 1148 0.033504 TTTGACTCGCTGGTCCTCAC 59.966 55.000 4.00 0.00 35.54 3.51 F
907 1247 0.251430 TACTTTCCTTTTGGGCGGGG 60.251 55.000 0.00 0.00 40.87 5.73 F
2413 3006 0.109597 GCTCAAGTTGTGCCCATTCG 60.110 55.000 17.19 0.00 31.28 3.34 F
2581 3183 2.102252 GTCAGCTCTGGAATCTACAGGG 59.898 54.545 0.00 0.00 39.46 4.45 F
3810 4417 0.036858 AGCGTCTTGAGAAGGAAGCC 60.037 55.000 0.00 0.00 37.59 4.35 F
4756 5364 0.623723 TGGGAGGAGGTAATTGCCAC 59.376 55.000 15.49 8.44 0.00 5.01 F
6208 6843 0.603975 AGGTTCTCGACAAGCTTGGC 60.604 55.000 29.18 26.37 29.58 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2236 2829 0.029567 CGCACTTAAAAACCCACGCA 59.970 50.000 0.00 0.00 0.00 5.24 R
2392 2985 2.436417 GAATGGGCACAACTTGAGCTA 58.564 47.619 10.50 2.18 34.36 3.32 R
2808 3410 2.026262 TCTACATCTTTGGCACCCCTTC 60.026 50.000 0.00 0.00 0.00 3.46 R
3600 4207 0.519077 CTTCCTGCCTCTTTTGTCGC 59.481 55.000 0.00 0.00 0.00 5.19 R
4459 5067 0.037697 TACGGGTGACATGACACTGC 60.038 55.000 23.95 11.12 40.22 4.40 R
5545 6158 0.318441 CGGAGAGCCTGTTCAGTCAA 59.682 55.000 0.00 0.00 0.00 3.18 R
6321 6960 0.254178 TAGAGGGACGTTCGGCTACT 59.746 55.000 0.00 0.00 0.00 2.57 R
7154 8027 0.110238 CCACGGCAAAAGTGATCACG 60.110 55.000 19.85 9.01 41.83 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.779569 TTTCTCGAACCGCTGAAGTC 58.220 50.000 0.00 0.00 0.00 3.01
56 57 7.538575 GTTGCCTTATTAATTCTCTTGAAGCA 58.461 34.615 0.00 0.00 35.44 3.91
118 119 6.507900 TGTTTTCGAAATGCACCAAAAGATA 58.492 32.000 12.12 0.00 0.00 1.98
124 125 5.920273 CGAAATGCACCAAAAGATACAAAGT 59.080 36.000 0.00 0.00 0.00 2.66
148 467 8.097038 AGTATACCTACCATATCATGCAACAAG 58.903 37.037 0.00 0.00 0.00 3.16
154 473 7.864379 CCTACCATATCATGCAACAAGAAATTC 59.136 37.037 0.00 0.00 0.00 2.17
180 499 8.761497 CGTAAGTTACATTCTCAAAGAGTTCAA 58.239 33.333 13.33 0.00 0.00 2.69
235 554 6.861065 AAAGTTATGCATAATGGTAGACGG 57.139 37.500 21.52 0.00 0.00 4.79
240 559 2.224042 TGCATAATGGTAGACGGAGCAG 60.224 50.000 0.00 0.00 0.00 4.24
276 595 7.546778 TTTTAAAGACATGGCTTTGGTTTTC 57.453 32.000 32.54 0.58 38.47 2.29
280 599 0.033228 CATGGCTTTGGTTTTCCGCA 59.967 50.000 0.00 0.00 44.36 5.69
283 602 1.739667 GCTTTGGTTTTCCGCACCT 59.260 52.632 0.00 0.00 44.36 4.00
284 603 0.104120 GCTTTGGTTTTCCGCACCTT 59.896 50.000 0.00 0.00 44.36 3.50
330 649 3.572255 CCCTGGTCTCTAGCTATCTTCAC 59.428 52.174 0.00 0.00 0.00 3.18
333 652 2.350007 GGTCTCTAGCTATCTTCACGCG 60.350 54.545 3.53 3.53 0.00 6.01
388 707 2.745308 CCTCATCACGGCCCCATGA 61.745 63.158 0.00 0.00 0.00 3.07
392 711 0.173255 CATCACGGCCCCATGAAAAC 59.827 55.000 0.00 0.00 0.00 2.43
395 714 0.319469 CACGGCCCCATGAAAACAAC 60.319 55.000 0.00 0.00 0.00 3.32
418 737 0.319555 TTCGAGCGTTTCCAGTGAGG 60.320 55.000 0.00 0.00 39.47 3.86
457 776 2.769663 TGAGTTTCATGCGGGTATAGGT 59.230 45.455 0.00 0.00 0.00 3.08
491 810 6.346518 CGCACAAGGAACCAAATCATTTTTAC 60.347 38.462 0.00 0.00 0.00 2.01
492 811 6.346518 GCACAAGGAACCAAATCATTTTTACG 60.347 38.462 0.00 0.00 0.00 3.18
493 812 5.694458 ACAAGGAACCAAATCATTTTTACGC 59.306 36.000 0.00 0.00 0.00 4.42
535 854 1.388547 GCTGAGACCAACCAAACACA 58.611 50.000 0.00 0.00 0.00 3.72
537 856 2.643551 CTGAGACCAACCAAACACACT 58.356 47.619 0.00 0.00 0.00 3.55
549 868 6.144078 ACCAAACACACTCCAAAATAGAAC 57.856 37.500 0.00 0.00 0.00 3.01
556 875 5.067153 CACACTCCAAAATAGAACACCAACA 59.933 40.000 0.00 0.00 0.00 3.33
557 876 5.833131 ACACTCCAAAATAGAACACCAACAT 59.167 36.000 0.00 0.00 0.00 2.71
558 877 6.151691 CACTCCAAAATAGAACACCAACATG 58.848 40.000 0.00 0.00 0.00 3.21
569 898 7.027778 AGAACACCAACATGTAAAAAGTCTC 57.972 36.000 0.00 0.00 30.75 3.36
582 911 3.587797 AAAGTCTCGACGCCTAAATCA 57.412 42.857 0.00 0.00 36.20 2.57
610 946 2.226912 CCGAGAATTGGCAAAACCGTAA 59.773 45.455 3.01 0.00 43.94 3.18
621 957 4.215613 GGCAAAACCGTAACTCATTTCTCT 59.784 41.667 0.00 0.00 0.00 3.10
627 963 7.406031 AACCGTAACTCATTTCTCTGATCTA 57.594 36.000 0.00 0.00 0.00 1.98
628 964 7.406031 ACCGTAACTCATTTCTCTGATCTAA 57.594 36.000 0.00 0.00 0.00 2.10
629 965 8.012957 ACCGTAACTCATTTCTCTGATCTAAT 57.987 34.615 0.00 0.00 0.00 1.73
630 966 9.132923 ACCGTAACTCATTTCTCTGATCTAATA 57.867 33.333 0.00 0.00 0.00 0.98
641 977 9.877178 TTTCTCTGATCTAATAAGACTGGTTTC 57.123 33.333 0.00 0.00 33.57 2.78
655 991 0.389817 GGTTTCCTTGGGCGCATTTC 60.390 55.000 10.83 0.00 0.00 2.17
690 1026 9.750125 AAATAGAAAGGAGAAATCAACAAACAC 57.250 29.630 0.00 0.00 0.00 3.32
709 1045 0.744281 CTCGCTTTCTCTCCCTCTCC 59.256 60.000 0.00 0.00 0.00 3.71
710 1046 1.032657 TCGCTTTCTCTCCCTCTCCG 61.033 60.000 0.00 0.00 0.00 4.63
713 1049 0.744281 CTTTCTCTCCCTCTCCGCTC 59.256 60.000 0.00 0.00 0.00 5.03
714 1050 0.333312 TTTCTCTCCCTCTCCGCTCT 59.667 55.000 0.00 0.00 0.00 4.09
715 1051 0.106918 TTCTCTCCCTCTCCGCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
716 1052 0.986019 TCTCTCCCTCTCCGCTCTCT 60.986 60.000 0.00 0.00 0.00 3.10
718 1054 0.106918 TCTCCCTCTCCGCTCTCTTC 60.107 60.000 0.00 0.00 0.00 2.87
719 1055 0.106719 CTCCCTCTCCGCTCTCTTCT 60.107 60.000 0.00 0.00 0.00 2.85
720 1056 1.142060 CTCCCTCTCCGCTCTCTTCTA 59.858 57.143 0.00 0.00 0.00 2.10
721 1057 1.777878 TCCCTCTCCGCTCTCTTCTAT 59.222 52.381 0.00 0.00 0.00 1.98
722 1058 2.980379 TCCCTCTCCGCTCTCTTCTATA 59.020 50.000 0.00 0.00 0.00 1.31
723 1059 3.589735 TCCCTCTCCGCTCTCTTCTATAT 59.410 47.826 0.00 0.00 0.00 0.86
751 1087 0.667487 ACAATCCGTCTCACTGCGTG 60.667 55.000 2.79 2.79 34.45 5.34
808 1148 0.033504 TTTGACTCGCTGGTCCTCAC 59.966 55.000 4.00 0.00 35.54 3.51
907 1247 0.251430 TACTTTCCTTTTGGGCGGGG 60.251 55.000 0.00 0.00 40.87 5.73
965 1306 0.611714 GCCGTGGGAGGAGTAGAAAA 59.388 55.000 0.00 0.00 0.00 2.29
966 1307 1.209747 GCCGTGGGAGGAGTAGAAAAT 59.790 52.381 0.00 0.00 0.00 1.82
968 1309 2.158943 CCGTGGGAGGAGTAGAAAATCC 60.159 54.545 0.00 0.00 35.71 3.01
970 1311 3.197983 CGTGGGAGGAGTAGAAAATCCTT 59.802 47.826 0.00 0.00 46.12 3.36
975 1325 4.441773 GGAGGAGTAGAAAATCCTTCGGAC 60.442 50.000 0.00 0.00 46.12 4.79
979 1329 1.060465 GAAAATCCTTCGGACGCGC 59.940 57.895 5.73 0.00 32.98 6.86
982 1332 3.599285 AATCCTTCGGACGCGCCAA 62.599 57.895 5.73 5.30 32.98 4.52
1014 1364 3.767131 CCCATTCTCCAAATTAAACCCGT 59.233 43.478 0.00 0.00 0.00 5.28
1119 1481 4.796231 CTCGCGCCTACCGTGCTT 62.796 66.667 0.00 0.00 46.29 3.91
1133 1495 4.918201 GCTTCCCGCCCGGATCAG 62.918 72.222 0.73 2.18 41.63 2.90
1175 1537 0.322187 CCACGGGAAGGAATTCGGTT 60.322 55.000 0.00 0.00 0.00 4.44
1262 1850 3.515901 ACCCTAGATTTCTGCTCGTTTCT 59.484 43.478 0.00 0.00 0.00 2.52
1278 1866 5.114081 TCGTTTCTTTCTTCCGTCTTTCTT 58.886 37.500 0.00 0.00 0.00 2.52
1319 1907 4.507710 TCCGACCAGATCTTGATTCTTTG 58.492 43.478 0.00 0.00 0.00 2.77
1326 1914 3.267812 AGATCTTGATTCTTTGCCCAGGA 59.732 43.478 0.00 0.00 0.00 3.86
1435 2023 1.218230 GCGATCTGCGATCTGAACCC 61.218 60.000 13.90 0.00 44.57 4.11
1443 2031 2.046314 ATCTGAACCCAACCGCCG 60.046 61.111 0.00 0.00 0.00 6.46
1465 2053 1.948403 AATCCCCGCCCACAATGGAT 61.948 55.000 0.00 0.00 40.96 3.41
1468 2056 3.530260 CCGCCCACAATGGATGCC 61.530 66.667 0.00 0.00 40.96 4.40
1535 2123 3.626996 TTGGGGCAGTCGCAGATGG 62.627 63.158 0.00 0.00 40.67 3.51
1723 2311 1.152881 GCGGAAGAGGGCATCCAAT 60.153 57.895 0.00 0.00 35.34 3.16
2056 2644 4.332268 GTGTTGGAAGATGAATCAGAGCTC 59.668 45.833 5.27 5.27 0.00 4.09
2191 2781 7.864108 TTAATATGTCTTGATGTCTTGTGGG 57.136 36.000 0.00 0.00 0.00 4.61
2192 2782 3.795688 ATGTCTTGATGTCTTGTGGGT 57.204 42.857 0.00 0.00 0.00 4.51
2193 2783 3.576078 TGTCTTGATGTCTTGTGGGTT 57.424 42.857 0.00 0.00 0.00 4.11
2413 3006 0.109597 GCTCAAGTTGTGCCCATTCG 60.110 55.000 17.19 0.00 31.28 3.34
2433 3027 8.341903 CCATTCGTTGAATATACAACATGCTTA 58.658 33.333 0.00 0.00 46.96 3.09
2441 3035 9.559732 TGAATATACAACATGCTTAGCTGTTAT 57.440 29.630 16.96 11.54 33.96 1.89
2522 3117 4.301072 TTTGCCTACTCCATAGCTTGTT 57.699 40.909 0.00 0.00 0.00 2.83
2581 3183 2.102252 GTCAGCTCTGGAATCTACAGGG 59.898 54.545 0.00 0.00 39.46 4.45
2588 3190 2.239654 CTGGAATCTACAGGGGCTGAAA 59.760 50.000 0.00 0.00 35.18 2.69
2638 3240 6.875948 TCAATGAAGTTAAGCAAAGCACTA 57.124 33.333 0.00 0.00 0.00 2.74
2668 3270 4.713792 AGGGATTAGATCAATGGTGGAC 57.286 45.455 0.00 0.00 0.00 4.02
2705 3307 4.462483 AGAACAACATTCAAAGGTGTGTGT 59.538 37.500 0.00 0.00 0.00 3.72
2706 3308 4.108699 ACAACATTCAAAGGTGTGTGTG 57.891 40.909 0.00 0.00 0.00 3.82
2707 3309 3.509575 ACAACATTCAAAGGTGTGTGTGT 59.490 39.130 0.00 0.00 0.00 3.72
2834 3436 3.629398 GGGTGCCAAAGATGTAGAATCAG 59.371 47.826 0.00 0.00 0.00 2.90
2881 3483 5.170748 CAAAATAATGAGGGAACTGTTGGC 58.829 41.667 0.00 0.00 44.43 4.52
2882 3484 3.737559 ATAATGAGGGAACTGTTGGCA 57.262 42.857 0.00 0.00 44.43 4.92
2925 3527 2.494471 CTGAGCTGCCAAATGGAAATGA 59.506 45.455 2.98 0.00 37.39 2.57
2947 3549 7.233389 TGATCCTGCTAATGTTAGTATCTCC 57.767 40.000 2.11 0.00 33.32 3.71
2948 3550 7.013220 TGATCCTGCTAATGTTAGTATCTCCT 58.987 38.462 2.11 0.00 33.32 3.69
2949 3551 6.902771 TCCTGCTAATGTTAGTATCTCCTC 57.097 41.667 2.11 0.00 33.32 3.71
2995 3599 6.569179 ACCGAAGTGTGCAAGTATTTAAAT 57.431 33.333 5.89 5.89 0.00 1.40
3086 3690 5.476599 ACATTAAGTTGCTGCACCTTATTCA 59.523 36.000 18.42 6.41 0.00 2.57
3093 3697 5.275067 TGCTGCACCTTATTCAAACTTTT 57.725 34.783 0.00 0.00 0.00 2.27
3099 3703 9.696917 CTGCACCTTATTCAAACTTTTAGAAAT 57.303 29.630 0.00 0.00 0.00 2.17
3152 3756 3.065371 GCATATACACAACCAAGCTGTCC 59.935 47.826 0.00 0.00 0.00 4.02
3210 3815 5.951747 TGAGCCAATATAGCCTTGTTTCTTT 59.048 36.000 0.00 0.00 0.00 2.52
3286 3891 4.168760 GCCATTTGATCTGCAACTACAAC 58.831 43.478 0.00 0.00 35.91 3.32
3384 3989 2.423185 TGCCATATTACAACAGCAGTGC 59.577 45.455 7.13 7.13 0.00 4.40
3600 4207 7.503521 AAAGGAAGAAGCTGAAGTAAAGAAG 57.496 36.000 0.00 0.00 0.00 2.85
3753 4360 6.968250 AGAAGAAGCTGAAATGAGAAAACAG 58.032 36.000 0.00 0.00 0.00 3.16
3789 4396 5.182001 GCAAGAGGAAGCTGATAAAGAACAA 59.818 40.000 0.00 0.00 0.00 2.83
3810 4417 0.036858 AGCGTCTTGAGAAGGAAGCC 60.037 55.000 0.00 0.00 37.59 4.35
3885 4492 4.382754 CGCCTTTTCAAAAGTAATGACAGC 59.617 41.667 9.07 1.88 0.00 4.40
3925 4532 3.593096 GAGAATGACTCAGATGTGCACA 58.407 45.455 24.08 24.08 44.36 4.57
4048 4655 6.007076 CAGAGGTGAGCTATGTCTCCTAATA 58.993 44.000 0.00 0.00 39.94 0.98
4079 4686 7.670605 TTCCTTTTGATAGTAGGCTAGCTTA 57.329 36.000 15.72 8.86 34.87 3.09
4095 4702 7.775093 AGGCTAGCTTATTAAACACATTCATGA 59.225 33.333 15.72 0.00 0.00 3.07
4099 4706 8.353423 AGCTTATTAAACACATTCATGAGGTT 57.647 30.769 0.00 0.00 33.04 3.50
4100 4707 8.246180 AGCTTATTAAACACATTCATGAGGTTG 58.754 33.333 0.00 0.00 30.98 3.77
4108 4715 3.438087 ACATTCATGAGGTTGCTCGAAAG 59.562 43.478 0.00 0.00 0.00 2.62
4148 4755 6.813649 GGCTTTCCCAGAGAAAATTAACATTC 59.186 38.462 0.00 0.00 43.84 2.67
4153 4760 8.827832 TCCCAGAGAAAATTAACATTCATGAT 57.172 30.769 0.00 0.00 0.00 2.45
4175 4782 6.607600 TGATCTATTGTAGTCTTACTGTGCCT 59.392 38.462 0.00 0.00 0.00 4.75
4179 4786 8.809066 TCTATTGTAGTCTTACTGTGCCTTTTA 58.191 33.333 0.00 0.00 0.00 1.52
4180 4787 7.668525 ATTGTAGTCTTACTGTGCCTTTTAC 57.331 36.000 0.00 0.00 0.00 2.01
4198 4806 7.524367 GCCTTTTACATGCTTTAGATATGCCAT 60.524 37.037 0.00 0.00 0.00 4.40
4260 4868 4.984161 CACTGGTTGGCAAAAGTTATCAAG 59.016 41.667 12.72 0.21 0.00 3.02
4367 4975 9.987272 ATGACATGATCGATGAAATACTTTCTA 57.013 29.630 0.54 0.00 40.32 2.10
4459 5067 1.673665 GCTTCCAGCCAGTGAGGTG 60.674 63.158 0.00 0.00 40.61 4.00
4460 5068 1.673665 CTTCCAGCCAGTGAGGTGC 60.674 63.158 0.00 0.00 40.61 5.01
4462 5070 2.359602 CCAGCCAGTGAGGTGCAG 60.360 66.667 0.00 0.00 40.61 4.41
4567 5175 4.202503 CCAGCATATTATGGGACTTGGAGT 60.203 45.833 5.84 0.00 32.63 3.85
4584 5192 8.004087 ACTTGGAGTAAGAAAAGGTTAAAACC 57.996 34.615 3.56 3.56 43.26 3.27
4756 5364 0.623723 TGGGAGGAGGTAATTGCCAC 59.376 55.000 15.49 8.44 0.00 5.01
4845 5453 1.338579 CCTGGTGAGAGCCTTTCTGAC 60.339 57.143 0.00 0.00 39.08 3.51
5045 5654 3.198409 TGCCTGTATGCTTACATCCAG 57.802 47.619 12.39 2.07 39.34 3.86
5052 5661 1.753930 TGCTTACATCCAGGCATGTG 58.246 50.000 12.42 0.00 37.57 3.21
5078 5687 5.112129 ACCACCTCAGAGTTAACAAAAGT 57.888 39.130 8.61 0.00 0.00 2.66
5087 5696 6.150307 TCAGAGTTAACAAAAGTGCAAGACAA 59.850 34.615 8.61 0.00 0.00 3.18
5214 5827 5.163754 ACAACTTCTGTCAAAGCTGTTACAC 60.164 40.000 0.00 0.00 33.00 2.90
5221 5834 6.423905 TCTGTCAAAGCTGTTACACAGATAAC 59.576 38.462 8.11 2.48 45.10 1.89
5225 5838 7.376072 GTCAAAGCTGTTACACAGATAACAAAC 59.624 37.037 8.11 0.00 45.10 2.93
5265 5878 9.691362 TTCAGCAAGAAATAAAAGAAATACACC 57.309 29.630 0.00 0.00 32.05 4.16
5281 5894 7.831193 AGAAATACACCTGCTCTTTGTTGATAT 59.169 33.333 0.00 0.00 0.00 1.63
5283 5896 4.910195 ACACCTGCTCTTTGTTGATATGA 58.090 39.130 0.00 0.00 0.00 2.15
5284 5897 4.697352 ACACCTGCTCTTTGTTGATATGAC 59.303 41.667 0.00 0.00 0.00 3.06
5285 5898 4.696877 CACCTGCTCTTTGTTGATATGACA 59.303 41.667 0.00 0.00 0.00 3.58
5286 5899 4.697352 ACCTGCTCTTTGTTGATATGACAC 59.303 41.667 0.00 0.00 0.00 3.67
5287 5900 4.696877 CCTGCTCTTTGTTGATATGACACA 59.303 41.667 0.00 0.00 0.00 3.72
5288 5901 5.391310 CCTGCTCTTTGTTGATATGACACAC 60.391 44.000 0.00 0.00 0.00 3.82
5289 5902 4.455533 TGCTCTTTGTTGATATGACACACC 59.544 41.667 0.00 0.00 0.00 4.16
5290 5903 4.697352 GCTCTTTGTTGATATGACACACCT 59.303 41.667 0.00 0.00 0.00 4.00
5291 5904 5.163814 GCTCTTTGTTGATATGACACACCTC 60.164 44.000 0.00 0.00 0.00 3.85
5292 5905 5.245531 TCTTTGTTGATATGACACACCTCC 58.754 41.667 0.00 0.00 0.00 4.30
5293 5906 4.632327 TTGTTGATATGACACACCTCCA 57.368 40.909 0.00 0.00 0.00 3.86
5294 5907 4.206477 TGTTGATATGACACACCTCCAG 57.794 45.455 0.00 0.00 0.00 3.86
5295 5908 3.582647 TGTTGATATGACACACCTCCAGT 59.417 43.478 0.00 0.00 0.00 4.00
5296 5909 4.041567 TGTTGATATGACACACCTCCAGTT 59.958 41.667 0.00 0.00 0.00 3.16
5297 5910 4.471904 TGATATGACACACCTCCAGTTC 57.528 45.455 0.00 0.00 0.00 3.01
5298 5911 4.096681 TGATATGACACACCTCCAGTTCT 58.903 43.478 0.00 0.00 0.00 3.01
5299 5912 2.847327 ATGACACACCTCCAGTTCTG 57.153 50.000 0.00 0.00 0.00 3.02
5300 5913 1.496060 TGACACACCTCCAGTTCTGT 58.504 50.000 0.00 0.00 0.00 3.41
5301 5914 1.837439 TGACACACCTCCAGTTCTGTT 59.163 47.619 0.00 0.00 0.00 3.16
5302 5915 2.238646 TGACACACCTCCAGTTCTGTTT 59.761 45.455 0.00 0.00 0.00 2.83
5303 5916 2.614057 GACACACCTCCAGTTCTGTTTG 59.386 50.000 0.00 0.00 0.00 2.93
5304 5917 2.238646 ACACACCTCCAGTTCTGTTTGA 59.761 45.455 0.00 0.00 0.00 2.69
5305 5918 2.874701 CACACCTCCAGTTCTGTTTGAG 59.125 50.000 0.00 0.00 0.00 3.02
5306 5919 2.771943 ACACCTCCAGTTCTGTTTGAGA 59.228 45.455 6.27 0.00 0.00 3.27
5307 5920 3.181461 ACACCTCCAGTTCTGTTTGAGAG 60.181 47.826 6.27 2.63 30.18 3.20
5308 5921 2.224402 ACCTCCAGTTCTGTTTGAGAGC 60.224 50.000 6.27 0.00 32.13 4.09
5309 5922 2.224378 CCTCCAGTTCTGTTTGAGAGCA 60.224 50.000 6.27 0.00 34.40 4.26
5310 5923 3.558746 CCTCCAGTTCTGTTTGAGAGCAT 60.559 47.826 6.27 0.00 34.40 3.79
5311 5924 4.323028 CCTCCAGTTCTGTTTGAGAGCATA 60.323 45.833 6.27 0.00 34.40 3.14
5312 5925 5.426504 CTCCAGTTCTGTTTGAGAGCATAT 58.573 41.667 0.00 0.00 34.40 1.78
5313 5926 5.181009 TCCAGTTCTGTTTGAGAGCATATG 58.819 41.667 0.00 0.00 34.40 1.78
5314 5927 4.201891 CCAGTTCTGTTTGAGAGCATATGC 60.202 45.833 20.36 20.36 42.49 3.14
5364 5977 2.355010 ATGCTACCTCATTCCCAAGC 57.645 50.000 0.00 0.00 0.00 4.01
5480 6093 2.806434 TGATGCCAGTAGTTTGCCAAT 58.194 42.857 0.00 0.00 0.00 3.16
5481 6094 2.492881 TGATGCCAGTAGTTTGCCAATG 59.507 45.455 0.00 0.00 0.00 2.82
5763 6376 2.833794 TCTGAAGAAACCAACCAGTCG 58.166 47.619 0.00 0.00 0.00 4.18
5802 6415 1.937278 CAGCTGCATCCTCTGTACTG 58.063 55.000 0.00 0.00 0.00 2.74
5831 6444 6.770785 ACAGACCTGCAAGAAATTGTAAGTAA 59.229 34.615 0.00 0.00 34.07 2.24
5834 6447 7.665559 AGACCTGCAAGAAATTGTAAGTAATCA 59.334 33.333 0.00 0.00 34.07 2.57
5879 6493 6.152661 TGTTGAATGGAGGTAGCATTTTAAGG 59.847 38.462 0.00 0.00 0.00 2.69
5881 6495 3.730215 TGGAGGTAGCATTTTAAGGCA 57.270 42.857 1.79 0.00 38.35 4.75
5989 6603 3.071479 GCACCAGAAATTTCCGACTGTA 58.929 45.455 14.61 0.00 0.00 2.74
5992 6606 5.506649 GCACCAGAAATTTCCGACTGTAAAA 60.507 40.000 14.61 0.00 0.00 1.52
6073 6687 6.395629 GCAGGTCAGAATACTTACACACTTA 58.604 40.000 0.00 0.00 0.00 2.24
6074 6688 7.042335 GCAGGTCAGAATACTTACACACTTAT 58.958 38.462 0.00 0.00 0.00 1.73
6087 6701 4.569943 ACACACTTATCAGCACACCTTAG 58.430 43.478 0.00 0.00 0.00 2.18
6095 6709 2.561419 TCAGCACACCTTAGTACCTGAC 59.439 50.000 0.00 0.00 29.58 3.51
6112 6726 6.299805 ACCTGACTATCACTGCTCATTTAA 57.700 37.500 0.00 0.00 0.00 1.52
6126 6740 9.429359 ACTGCTCATTTAATATAGTAGCATGAC 57.571 33.333 0.00 0.00 37.80 3.06
6127 6741 8.777865 TGCTCATTTAATATAGTAGCATGACC 57.222 34.615 0.00 0.00 33.84 4.02
6128 6742 7.545615 TGCTCATTTAATATAGTAGCATGACCG 59.454 37.037 0.00 0.00 33.84 4.79
6129 6743 7.010552 GCTCATTTAATATAGTAGCATGACCGG 59.989 40.741 0.00 0.00 0.00 5.28
6130 6744 8.129496 TCATTTAATATAGTAGCATGACCGGA 57.871 34.615 9.46 0.00 0.00 5.14
6131 6745 8.758829 TCATTTAATATAGTAGCATGACCGGAT 58.241 33.333 9.46 0.00 0.00 4.18
6132 6746 9.035607 CATTTAATATAGTAGCATGACCGGATC 57.964 37.037 9.46 2.18 0.00 3.36
6133 6747 7.712204 TTAATATAGTAGCATGACCGGATCA 57.288 36.000 9.46 9.04 43.13 2.92
6134 6748 6.605471 AATATAGTAGCATGACCGGATCAA 57.395 37.500 9.46 0.00 41.93 2.57
6135 6749 4.955811 ATAGTAGCATGACCGGATCAAA 57.044 40.909 9.46 0.00 41.93 2.69
6136 6750 3.185246 AGTAGCATGACCGGATCAAAG 57.815 47.619 9.46 6.94 41.93 2.77
6137 6751 2.766263 AGTAGCATGACCGGATCAAAGA 59.234 45.455 9.46 0.00 41.93 2.52
6138 6752 3.389329 AGTAGCATGACCGGATCAAAGAT 59.611 43.478 9.46 7.10 41.93 2.40
6146 6781 4.695455 TGACCGGATCAAAGATTTTCACTC 59.305 41.667 9.46 0.00 33.02 3.51
6196 6831 4.642429 TGCAGGTTAAGAAAGAGGTTCTC 58.358 43.478 0.00 0.00 46.36 2.87
6208 6843 0.603975 AGGTTCTCGACAAGCTTGGC 60.604 55.000 29.18 26.37 29.58 4.52
6274 6913 2.639839 AGTAGGAATGTTGCACCTCACT 59.360 45.455 0.00 0.00 35.52 3.41
6321 6960 0.034896 GTCCCCAGAAGACGAAAGCA 59.965 55.000 0.00 0.00 0.00 3.91
6327 6966 1.996191 CAGAAGACGAAAGCAGTAGCC 59.004 52.381 0.00 0.00 43.56 3.93
6330 6969 0.601558 AGACGAAAGCAGTAGCCGAA 59.398 50.000 0.00 0.00 43.56 4.30
6551 7190 4.889409 TGAAGCAGTCTTTCTTGAATTGGT 59.111 37.500 0.00 0.00 31.48 3.67
6583 7222 3.049912 GGCGGTTTAAAACAAGCAGAAG 58.950 45.455 3.76 0.00 38.00 2.85
6657 7296 2.021068 GCATCCTGCTCCGAGCTGTA 62.021 60.000 20.87 8.41 42.97 2.74
6660 7299 0.323451 TCCTGCTCCGAGCTGTAGAA 60.323 55.000 20.87 0.00 42.97 2.10
6688 7327 4.430137 TTTGCAATCTGCTCTAGCTTTG 57.570 40.909 0.00 6.12 45.31 2.77
6752 7391 8.834465 GTTCCATTGCTATATATGCTATTCTGG 58.166 37.037 0.00 0.90 0.00 3.86
6809 7450 8.436046 TGCCTCATAATTTTTAAATTGGATGC 57.564 30.769 10.00 13.64 38.90 3.91
6849 7490 4.640647 GGGAAAACTGGGAACTGATGTATC 59.359 45.833 0.00 0.00 0.00 2.24
7033 7896 5.069781 TCCCTTTGTTTGGAAATAAGTGGTG 59.930 40.000 0.00 0.00 0.00 4.17
7067 7930 6.831727 TCAAATTGTTTGTCATCAAAGCAG 57.168 33.333 2.74 0.00 43.04 4.24
7068 7931 5.234757 TCAAATTGTTTGTCATCAAAGCAGC 59.765 36.000 2.74 0.00 43.04 5.25
7069 7932 3.797451 TTGTTTGTCATCAAAGCAGCA 57.203 38.095 0.00 0.00 43.04 4.41
7070 7933 3.358707 TGTTTGTCATCAAAGCAGCAG 57.641 42.857 0.00 0.00 43.04 4.24
7071 7934 2.034939 TGTTTGTCATCAAAGCAGCAGG 59.965 45.455 0.00 0.00 43.04 4.85
7072 7935 1.250328 TTGTCATCAAAGCAGCAGGG 58.750 50.000 0.00 0.00 0.00 4.45
7073 7936 0.401356 TGTCATCAAAGCAGCAGGGA 59.599 50.000 0.00 0.00 0.00 4.20
7074 7937 1.202915 TGTCATCAAAGCAGCAGGGAA 60.203 47.619 0.00 0.00 0.00 3.97
7075 7938 1.888512 GTCATCAAAGCAGCAGGGAAA 59.111 47.619 0.00 0.00 0.00 3.13
7076 7939 2.094854 GTCATCAAAGCAGCAGGGAAAG 60.095 50.000 0.00 0.00 0.00 2.62
7092 7965 3.347216 GGAAAGCATGAAACCTGAGCTA 58.653 45.455 0.00 0.00 34.66 3.32
7126 7999 8.801715 ATTAAGTTCAAACTACATTGCACAAG 57.198 30.769 0.00 0.00 38.57 3.16
7146 8019 9.724839 GCACAAGTACAAATTTAAACTAGTTCA 57.275 29.630 8.95 0.00 0.00 3.18
7151 8024 8.562052 AGTACAAATTTAAACTAGTTCAACGGG 58.438 33.333 8.95 0.00 0.00 5.28
7154 8027 5.874895 ATTTAAACTAGTTCAACGGGAGC 57.125 39.130 8.95 0.00 0.00 4.70
7187 8060 4.115199 GTGGGCCGCCTCCTGAAT 62.115 66.667 9.86 0.00 0.00 2.57
7190 8063 4.115199 GGCCGCCTCCTGAATGGT 62.115 66.667 0.71 0.00 37.07 3.55
7198 8071 2.364002 GCCTCCTGAATGGTCTAGTCTC 59.636 54.545 0.00 0.00 37.07 3.36
7199 8072 3.909732 CCTCCTGAATGGTCTAGTCTCT 58.090 50.000 0.00 0.00 37.07 3.10
7258 8229 1.022735 GTTCTGGATGCATCTGCCTG 58.977 55.000 25.28 13.94 41.18 4.85
7286 8257 1.204704 CCATGTACTCTTCACGGCTCA 59.795 52.381 0.00 0.00 0.00 4.26
7320 8291 6.867550 TGTTTTCATGTACAATGTGTGGAAA 58.132 32.000 0.00 0.00 0.00 3.13
7470 8442 9.816354 ACATGTATTTAAGAATGTTAAATGGGC 57.184 29.630 15.60 8.27 35.89 5.36
7621 8606 3.715628 AGCGCAAACAGTGAAAAATCT 57.284 38.095 11.47 0.00 0.00 2.40
7626 8611 5.801947 GCGCAAACAGTGAAAAATCTGATAT 59.198 36.000 0.30 0.00 35.84 1.63
7660 8645 2.818130 AAAAATCCGCTGTTGCACAT 57.182 40.000 0.00 0.00 39.64 3.21
7691 8676 2.680913 CGGCGGCTTTCTGGTTCTG 61.681 63.158 7.61 0.00 0.00 3.02
7696 8681 1.338200 CGGCTTTCTGGTTCTGTAGCT 60.338 52.381 0.00 0.00 0.00 3.32
7716 8701 1.988015 CTTCCACCCCTTCGCCTAA 59.012 57.895 0.00 0.00 0.00 2.69
7740 8725 3.801997 CATGCTTCCGCTCCCCCT 61.802 66.667 0.00 0.00 36.97 4.79
7803 8789 0.951558 TCGCTCTGAAAAAGCCCAAC 59.048 50.000 0.00 0.00 36.36 3.77
7805 8791 1.270550 CGCTCTGAAAAAGCCCAACAT 59.729 47.619 0.00 0.00 36.36 2.71
7823 8809 1.932156 ATGGCACTTAATCGGGCCCA 61.932 55.000 24.92 9.77 45.83 5.36
7825 8811 1.663379 GGCACTTAATCGGGCCCAAC 61.663 60.000 24.92 0.00 40.55 3.77
7828 8814 0.988832 ACTTAATCGGGCCCAACTCA 59.011 50.000 24.92 0.44 0.00 3.41
7831 8817 2.122783 TAATCGGGCCCAACTCAAAG 57.877 50.000 24.92 1.98 0.00 2.77
7836 8822 2.597510 GCCCAACTCAAAGGCCGT 60.598 61.111 0.00 0.00 41.00 5.68
7837 8823 2.626780 GCCCAACTCAAAGGCCGTC 61.627 63.158 0.00 0.00 41.00 4.79
7895 8881 6.638063 CCTCTTGTTTTCATGTACAATGTGTG 59.362 38.462 0.00 0.00 34.10 3.82
7899 8885 6.502652 TGTTTTCATGTACAATGTGTGGAAG 58.497 36.000 0.00 0.00 0.00 3.46
7900 8886 6.096141 TGTTTTCATGTACAATGTGTGGAAGT 59.904 34.615 0.00 0.00 0.00 3.01
7901 8887 6.707440 TTTCATGTACAATGTGTGGAAGTT 57.293 33.333 0.00 0.00 0.00 2.66
7902 8888 6.707440 TTCATGTACAATGTGTGGAAGTTT 57.293 33.333 0.00 0.00 0.00 2.66
7903 8889 6.707440 TCATGTACAATGTGTGGAAGTTTT 57.293 33.333 0.00 0.00 0.00 2.43
7904 8890 6.502652 TCATGTACAATGTGTGGAAGTTTTG 58.497 36.000 0.00 0.00 0.00 2.44
7905 8891 5.906113 TGTACAATGTGTGGAAGTTTTGT 57.094 34.783 0.00 0.00 0.00 2.83
7906 8892 6.274157 TGTACAATGTGTGGAAGTTTTGTT 57.726 33.333 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.688813 GCTTCAAGAGAATTAATAAGGCAACG 59.311 38.462 0.00 0.00 35.47 4.10
56 57 7.736447 GCTATAATGGAGTAGCAATTTCAGT 57.264 36.000 0.00 0.00 42.18 3.41
93 94 4.803088 TCTTTTGGTGCATTTCGAAAACAG 59.197 37.500 15.66 9.13 0.00 3.16
97 98 6.078202 TGTATCTTTTGGTGCATTTCGAAA 57.922 33.333 13.91 13.91 0.00 3.46
101 102 8.986477 ATACTTTGTATCTTTTGGTGCATTTC 57.014 30.769 0.00 0.00 0.00 2.17
118 119 7.973402 TGCATGATATGGTAGGTATACTTTGT 58.027 34.615 2.25 0.00 32.12 2.83
124 125 8.201242 TCTTGTTGCATGATATGGTAGGTATA 57.799 34.615 0.00 0.00 0.00 1.47
154 473 8.294341 TGAACTCTTTGAGAATGTAACTTACG 57.706 34.615 1.25 0.00 33.32 3.18
276 595 0.958091 TTTGGACATGAAAGGTGCGG 59.042 50.000 0.00 0.00 43.83 5.69
318 637 0.454196 TGCACGCGTGAAGATAGCTA 59.546 50.000 41.19 12.60 0.00 3.32
388 707 3.963383 AACGCTCGAATCAGTTGTTTT 57.037 38.095 0.00 0.00 0.00 2.43
392 711 1.798223 TGGAAACGCTCGAATCAGTTG 59.202 47.619 0.00 0.00 0.00 3.16
395 714 1.391485 CACTGGAAACGCTCGAATCAG 59.609 52.381 0.00 0.00 0.00 2.90
418 737 0.947244 CAAAGCGTCCATATCCTGGC 59.053 55.000 0.00 0.00 45.52 4.85
430 749 0.238289 CCGCATGAAACTCAAAGCGT 59.762 50.000 18.87 0.00 46.35 5.07
470 789 5.120053 GGCGTAAAAATGATTTGGTTCCTTG 59.880 40.000 0.00 0.00 0.00 3.61
471 790 5.221541 TGGCGTAAAAATGATTTGGTTCCTT 60.222 36.000 0.00 0.00 0.00 3.36
478 797 5.173673 CGATGGATGGCGTAAAAATGATTTG 59.826 40.000 0.00 0.00 0.00 2.32
507 826 2.359975 GGTCTCAGCCCCCAAACG 60.360 66.667 0.00 0.00 0.00 3.60
535 854 5.833131 ACATGTTGGTGTTCTATTTTGGAGT 59.167 36.000 0.00 0.00 0.00 3.85
537 856 7.825331 TTACATGTTGGTGTTCTATTTTGGA 57.175 32.000 2.30 0.00 33.62 3.53
549 868 5.440685 GTCGAGACTTTTTACATGTTGGTG 58.559 41.667 2.30 0.00 0.00 4.17
556 875 3.314541 AGGCGTCGAGACTTTTTACAT 57.685 42.857 0.00 0.00 30.60 2.29
557 876 2.806608 AGGCGTCGAGACTTTTTACA 57.193 45.000 0.00 0.00 30.60 2.41
558 877 5.346822 TGATTTAGGCGTCGAGACTTTTTAC 59.653 40.000 0.00 0.00 40.13 2.01
569 898 1.517276 GTCGATGTGATTTAGGCGTCG 59.483 52.381 0.00 0.00 41.38 5.12
582 911 0.249120 TGCCAATTCTCGGTCGATGT 59.751 50.000 0.00 0.00 0.00 3.06
621 957 7.338710 CCAAGGAAACCAGTCTTATTAGATCA 58.661 38.462 0.00 0.00 31.86 2.92
627 963 3.431415 GCCCAAGGAAACCAGTCTTATT 58.569 45.455 0.00 0.00 0.00 1.40
628 964 2.618045 CGCCCAAGGAAACCAGTCTTAT 60.618 50.000 0.00 0.00 0.00 1.73
629 965 1.271163 CGCCCAAGGAAACCAGTCTTA 60.271 52.381 0.00 0.00 0.00 2.10
630 966 0.537371 CGCCCAAGGAAACCAGTCTT 60.537 55.000 0.00 0.00 0.00 3.01
641 977 0.388907 CAACTGAAATGCGCCCAAGG 60.389 55.000 4.18 0.00 0.00 3.61
655 991 6.808008 TTCTCCTTTCTATTTCTGCAACTG 57.192 37.500 0.00 0.00 0.00 3.16
687 1023 0.892063 GAGGGAGAGAAAGCGAGTGT 59.108 55.000 0.00 0.00 0.00 3.55
690 1026 0.744281 GGAGAGGGAGAGAAAGCGAG 59.256 60.000 0.00 0.00 0.00 5.03
808 1148 1.663388 GCCCCGCCAAAAACGAAAG 60.663 57.895 0.00 0.00 0.00 2.62
888 1228 0.251430 CCCCGCCCAAAAGGAAAGTA 60.251 55.000 0.00 0.00 38.24 2.24
889 1229 1.533033 CCCCGCCCAAAAGGAAAGT 60.533 57.895 0.00 0.00 38.24 2.66
968 1309 4.084888 GGTTTGGCGCGTCCGAAG 62.085 66.667 18.66 0.00 38.90 3.79
970 1311 4.612412 AAGGTTTGGCGCGTCCGA 62.612 61.111 8.89 6.85 37.80 4.55
979 1329 0.811281 GAATGGGAGCGAAGGTTTGG 59.189 55.000 0.00 0.00 39.88 3.28
982 1332 0.253327 GGAGAATGGGAGCGAAGGTT 59.747 55.000 0.00 0.00 39.88 3.50
1175 1537 1.360551 GCCGCTTGCGAGAGAGATA 59.639 57.895 16.99 0.00 0.00 1.98
1221 1807 1.268625 GTTCCTTACCGGCAAAAGGTG 59.731 52.381 23.14 6.32 42.47 4.00
1262 1850 6.485313 TCATAGCAAAAGAAAGACGGAAGAAA 59.515 34.615 0.00 0.00 0.00 2.52
1278 1866 3.243035 CGGATTCGGCATTTCATAGCAAA 60.243 43.478 0.00 0.00 0.00 3.68
1444 2032 2.043046 ATTGTGGGCGGGGATTGG 60.043 61.111 0.00 0.00 0.00 3.16
1445 2033 2.425569 CCATTGTGGGCGGGGATTG 61.426 63.158 0.00 0.00 32.67 2.67
1450 2038 3.530260 GCATCCATTGTGGGCGGG 61.530 66.667 0.00 0.00 38.32 6.13
1452 2040 3.891400 CGGCATCCATTGTGGGCG 61.891 66.667 0.00 0.00 42.72 6.13
1535 2123 2.741211 GACCGGGCCGTCAAACTC 60.741 66.667 26.32 5.27 32.74 3.01
1723 2311 2.233566 AGGAGCAATCACAGGGCCA 61.234 57.895 6.18 0.00 0.00 5.36
1790 2378 3.757493 ACCTCCTTGTAGTACTCGAACAG 59.243 47.826 0.00 0.00 0.00 3.16
1984 2572 1.588239 TCATCCTCTGCCCAATGAGT 58.412 50.000 0.00 0.00 0.00 3.41
2056 2644 0.035630 CCTCCCAGCACCAAAGAGAG 60.036 60.000 0.00 0.00 0.00 3.20
2191 2781 6.759497 AATCTCTTACCTGCAATTACCAAC 57.241 37.500 0.00 0.00 0.00 3.77
2192 2782 6.945435 TCAAATCTCTTACCTGCAATTACCAA 59.055 34.615 0.00 0.00 0.00 3.67
2193 2783 6.480763 TCAAATCTCTTACCTGCAATTACCA 58.519 36.000 0.00 0.00 0.00 3.25
2236 2829 0.029567 CGCACTTAAAAACCCACGCA 59.970 50.000 0.00 0.00 0.00 5.24
2390 2983 3.931907 ATGGGCACAACTTGAGCTATA 57.068 42.857 10.50 0.00 34.36 1.31
2392 2985 2.436417 GAATGGGCACAACTTGAGCTA 58.564 47.619 10.50 2.18 34.36 3.32
2413 3006 7.697691 ACAGCTAAGCATGTTGTATATTCAAC 58.302 34.615 15.99 15.99 45.25 3.18
2522 3117 5.858381 AGAGATGCACTTAGTGAACAGAAA 58.142 37.500 17.40 0.00 35.23 2.52
2581 3183 6.319141 AGTTCATTTACTTGACTTTCAGCC 57.681 37.500 0.00 0.00 0.00 4.85
2638 3240 5.796502 TTGATCTAATCCCTTCCAGGTTT 57.203 39.130 0.00 0.00 31.93 3.27
2668 3270 5.295431 TGTTGTTCTTTTGTGTCACTCTG 57.705 39.130 4.27 0.00 0.00 3.35
2753 3355 8.907885 GCTTCAAATCCTTAAGGTTCAGATAAT 58.092 33.333 21.04 1.88 36.34 1.28
2808 3410 2.026262 TCTACATCTTTGGCACCCCTTC 60.026 50.000 0.00 0.00 0.00 3.46
2834 3436 2.745821 TCACTTGCATTGACTGATCTGC 59.254 45.455 0.00 0.00 35.21 4.26
2858 3460 5.170748 GCCAACAGTTCCCTCATTATTTTG 58.829 41.667 0.00 0.00 0.00 2.44
2881 3483 2.871022 GCCATTCACAGCATCTACTCTG 59.129 50.000 0.00 0.00 36.45 3.35
2882 3484 2.770802 AGCCATTCACAGCATCTACTCT 59.229 45.455 0.00 0.00 0.00 3.24
2925 3527 7.245292 AGAGGAGATACTAACATTAGCAGGAT 58.755 38.462 0.00 0.00 34.09 3.24
2973 3575 9.567848 AATTATTTAAATACTTGCACACTTCGG 57.432 29.630 7.43 0.00 0.00 4.30
3128 3732 3.440173 ACAGCTTGGTTGTGTATATGCAC 59.560 43.478 16.19 16.19 39.65 4.57
3130 3734 3.065371 GGACAGCTTGGTTGTGTATATGC 59.935 47.826 0.00 0.00 0.00 3.14
3152 3756 9.241317 CAAAAGTGCTAAGCAATCCAATATAAG 57.759 33.333 0.00 0.00 41.47 1.73
3286 3891 8.331022 CAAGAAACTAACATATCCACTGAATCG 58.669 37.037 0.00 0.00 0.00 3.34
3337 3942 8.087982 TGTTGCTCTTACTCAAAAACAGATAG 57.912 34.615 0.00 0.00 0.00 2.08
3384 3989 3.243301 ACAGAAATGCAGTTCACTTGCAG 60.243 43.478 26.87 10.73 42.11 4.41
3600 4207 0.519077 CTTCCTGCCTCTTTTGTCGC 59.481 55.000 0.00 0.00 0.00 5.19
3702 4309 0.671781 GGCGCTTCTGCTCTTTCAGA 60.672 55.000 7.64 0.00 40.99 3.27
3753 4360 1.610522 TCCTCTTGCTGCTTCTTTTGC 59.389 47.619 0.00 0.00 0.00 3.68
3789 4396 2.147150 GCTTCCTTCTCAAGACGCTTT 58.853 47.619 0.00 0.00 0.00 3.51
3810 4417 1.112459 GTTGTTTCTTGAGTTGCGCG 58.888 50.000 0.00 0.00 0.00 6.86
3851 4458 2.878580 TGAAAAGGCGCTGCATTAATG 58.121 42.857 11.27 11.27 30.56 1.90
3852 4459 3.591196 TTGAAAAGGCGCTGCATTAAT 57.409 38.095 7.64 0.00 30.56 1.40
3885 4492 7.334421 TCATTCTCTCCAGATTTAGGTTTTTCG 59.666 37.037 0.00 0.00 0.00 3.46
3920 4527 0.890542 GCCTGGATCAACAGTGTGCA 60.891 55.000 0.00 0.00 36.75 4.57
3921 4528 0.890542 TGCCTGGATCAACAGTGTGC 60.891 55.000 0.00 0.00 36.75 4.57
3925 4532 1.066858 CGTAGTGCCTGGATCAACAGT 60.067 52.381 0.00 0.00 36.75 3.55
4079 4686 6.594788 AGCAACCTCATGAATGTGTTTAAT 57.405 33.333 0.00 0.00 0.00 1.40
4111 4718 3.640029 CTGGGAAAGCCTCATGCATATTT 59.360 43.478 0.00 0.00 44.83 1.40
4148 4755 7.383572 GGCACAGTAAGACTACAATAGATCATG 59.616 40.741 0.00 0.00 0.00 3.07
4153 4760 6.852420 AAGGCACAGTAAGACTACAATAGA 57.148 37.500 0.00 0.00 0.00 1.98
4175 4782 8.911965 TCAATGGCATATCTAAAGCATGTAAAA 58.088 29.630 0.00 0.00 0.00 1.52
4179 4786 8.683615 CATATCAATGGCATATCTAAAGCATGT 58.316 33.333 0.00 0.00 0.00 3.21
4180 4787 8.135529 CCATATCAATGGCATATCTAAAGCATG 58.864 37.037 0.00 0.00 46.17 4.06
4198 4806 3.820467 GCATTCCATTCGACCCATATCAA 59.180 43.478 0.00 0.00 0.00 2.57
4209 4817 2.019249 ACCTGTGATGCATTCCATTCG 58.981 47.619 0.00 0.00 33.29 3.34
4260 4868 3.007398 CCATCTGGAGGACCTGTTATAGC 59.993 52.174 0.00 0.00 37.39 2.97
4367 4975 4.217118 GTGACAAGCATCTTCATTTGGAGT 59.783 41.667 0.00 0.00 0.00 3.85
4459 5067 0.037697 TACGGGTGACATGACACTGC 60.038 55.000 23.95 11.12 40.22 4.40
4460 5068 2.448926 TTACGGGTGACATGACACTG 57.551 50.000 23.95 19.15 40.22 3.66
4462 5070 2.967362 TCATTACGGGTGACATGACAC 58.033 47.619 18.33 18.33 39.70 3.67
4612 5220 8.970020 TGATATGGCAGTAGATTGAAAAACATT 58.030 29.630 0.00 0.00 0.00 2.71
4756 5364 2.693069 AGGACGACAAAGCAAGATCAG 58.307 47.619 0.00 0.00 0.00 2.90
4845 5453 3.368220 CCTCATCAGTGTCCTTCTCACAG 60.368 52.174 0.00 0.00 38.16 3.66
5052 5661 2.565834 TGTTAACTCTGAGGTGGTAGGC 59.434 50.000 5.25 0.00 0.00 3.93
5078 5687 6.272318 CAGGTTTAATCTTGTTTGTCTTGCA 58.728 36.000 0.00 0.00 0.00 4.08
5087 5696 6.899393 TCTGAATGCAGGTTTAATCTTGTT 57.101 33.333 0.00 0.00 42.53 2.83
5241 5854 9.132521 CAGGTGTATTTCTTTTATTTCTTGCTG 57.867 33.333 0.00 0.00 0.00 4.41
5265 5878 5.391310 GGTGTGTCATATCAACAAAGAGCAG 60.391 44.000 0.00 0.00 0.00 4.24
5281 5894 1.496060 ACAGAACTGGAGGTGTGTCA 58.504 50.000 6.76 0.00 34.19 3.58
5283 5896 2.238646 TCAAACAGAACTGGAGGTGTGT 59.761 45.455 6.76 0.00 34.19 3.72
5284 5897 2.874701 CTCAAACAGAACTGGAGGTGTG 59.125 50.000 6.76 0.00 34.19 3.82
5285 5898 2.771943 TCTCAAACAGAACTGGAGGTGT 59.228 45.455 6.76 0.00 34.19 4.16
5286 5899 3.397482 CTCTCAAACAGAACTGGAGGTG 58.603 50.000 6.76 0.00 34.19 4.00
5287 5900 2.224402 GCTCTCAAACAGAACTGGAGGT 60.224 50.000 6.76 0.00 34.19 3.85
5288 5901 2.224378 TGCTCTCAAACAGAACTGGAGG 60.224 50.000 6.76 0.00 34.19 4.30
5289 5902 3.117491 TGCTCTCAAACAGAACTGGAG 57.883 47.619 6.76 4.02 34.19 3.86
5290 5903 3.777106 ATGCTCTCAAACAGAACTGGA 57.223 42.857 6.76 0.00 34.19 3.86
5291 5904 4.201891 GCATATGCTCTCAAACAGAACTGG 60.202 45.833 20.64 0.00 38.21 4.00
5292 5905 4.493708 CGCATATGCTCTCAAACAGAACTG 60.494 45.833 24.56 0.00 39.32 3.16
5293 5906 3.620374 CGCATATGCTCTCAAACAGAACT 59.380 43.478 24.56 0.00 39.32 3.01
5294 5907 3.618594 TCGCATATGCTCTCAAACAGAAC 59.381 43.478 24.56 0.00 39.32 3.01
5295 5908 3.860641 TCGCATATGCTCTCAAACAGAA 58.139 40.909 24.56 0.00 39.32 3.02
5296 5909 3.131046 TCTCGCATATGCTCTCAAACAGA 59.869 43.478 24.56 10.45 39.32 3.41
5297 5910 3.451526 TCTCGCATATGCTCTCAAACAG 58.548 45.455 24.56 6.62 39.32 3.16
5298 5911 3.525268 TCTCGCATATGCTCTCAAACA 57.475 42.857 24.56 0.00 39.32 2.83
5299 5912 4.053983 TGATCTCGCATATGCTCTCAAAC 58.946 43.478 24.56 10.65 39.32 2.93
5300 5913 4.326504 TGATCTCGCATATGCTCTCAAA 57.673 40.909 24.56 4.66 39.32 2.69
5301 5914 4.532314 ATGATCTCGCATATGCTCTCAA 57.468 40.909 24.56 7.15 39.32 3.02
5302 5915 4.532314 AATGATCTCGCATATGCTCTCA 57.468 40.909 24.56 19.44 39.32 3.27
5303 5916 5.649557 ACTAATGATCTCGCATATGCTCTC 58.350 41.667 24.56 15.12 39.32 3.20
5304 5917 5.657826 ACTAATGATCTCGCATATGCTCT 57.342 39.130 24.56 6.97 39.32 4.09
5305 5918 6.718454 AAACTAATGATCTCGCATATGCTC 57.282 37.500 24.56 15.61 39.32 4.26
5306 5919 7.502120 AAAAACTAATGATCTCGCATATGCT 57.498 32.000 24.56 6.50 39.32 3.79
5328 5941 9.982651 GAGGTAGCATACTTATAGACATGAAAA 57.017 33.333 0.00 0.00 42.51 2.29
5329 5942 9.143155 TGAGGTAGCATACTTATAGACATGAAA 57.857 33.333 0.00 0.00 42.51 2.69
5330 5943 8.706322 TGAGGTAGCATACTTATAGACATGAA 57.294 34.615 0.00 0.00 42.51 2.57
5331 5944 8.885693 ATGAGGTAGCATACTTATAGACATGA 57.114 34.615 0.00 0.00 42.51 3.07
5332 5945 9.579768 GAATGAGGTAGCATACTTATAGACATG 57.420 37.037 0.00 0.00 42.51 3.21
5333 5946 8.754080 GGAATGAGGTAGCATACTTATAGACAT 58.246 37.037 0.00 0.00 42.51 3.06
5334 5947 7.178628 GGGAATGAGGTAGCATACTTATAGACA 59.821 40.741 0.00 0.00 42.51 3.41
5335 5948 7.178628 TGGGAATGAGGTAGCATACTTATAGAC 59.821 40.741 0.00 0.00 42.51 2.59
5336 5949 7.246027 TGGGAATGAGGTAGCATACTTATAGA 58.754 38.462 0.00 0.00 42.51 1.98
5337 5950 7.482169 TGGGAATGAGGTAGCATACTTATAG 57.518 40.000 0.00 0.00 42.51 1.31
5338 5951 7.527196 GCTTGGGAATGAGGTAGCATACTTATA 60.527 40.741 0.00 0.00 42.51 0.98
5339 5952 6.745474 GCTTGGGAATGAGGTAGCATACTTAT 60.745 42.308 0.00 0.00 42.51 1.73
5340 5953 5.454755 GCTTGGGAATGAGGTAGCATACTTA 60.455 44.000 0.00 0.00 42.51 2.24
5341 5954 4.687219 GCTTGGGAATGAGGTAGCATACTT 60.687 45.833 0.00 0.00 42.51 2.24
5342 5955 3.181450 GCTTGGGAATGAGGTAGCATACT 60.181 47.826 0.00 0.00 42.51 2.12
5343 5956 3.142174 GCTTGGGAATGAGGTAGCATAC 58.858 50.000 0.00 0.00 42.04 2.39
5344 5957 2.777114 TGCTTGGGAATGAGGTAGCATA 59.223 45.455 0.00 0.00 0.00 3.14
5349 5962 2.204463 TGGATGCTTGGGAATGAGGTA 58.796 47.619 0.00 0.00 0.00 3.08
5350 5963 1.002069 TGGATGCTTGGGAATGAGGT 58.998 50.000 0.00 0.00 0.00 3.85
5353 5966 3.605726 ATGATGGATGCTTGGGAATGA 57.394 42.857 0.00 0.00 0.00 2.57
5480 6093 1.131638 AACTTCTGGACACTGGCTCA 58.868 50.000 0.00 0.00 0.00 4.26
5481 6094 1.070758 TCAACTTCTGGACACTGGCTC 59.929 52.381 0.00 0.00 0.00 4.70
5545 6158 0.318441 CGGAGAGCCTGTTCAGTCAA 59.682 55.000 0.00 0.00 0.00 3.18
5763 6376 2.029110 TGCAGGGCTACTTTTTGCATTC 60.029 45.455 0.00 0.00 39.61 2.67
5802 6415 4.702131 ACAATTTCTTGCAGGTCTGTATCC 59.298 41.667 0.00 0.00 35.69 2.59
5855 6468 6.564328 CCTTAAAATGCTACCTCCATTCAAC 58.436 40.000 0.00 0.00 32.07 3.18
5965 6579 0.881118 TCGGAAATTTCTGGTGCAGC 59.119 50.000 23.64 9.47 34.32 5.25
5992 6606 7.054124 TCACTTTATGGTTCAGTTGAGTCTTT 58.946 34.615 0.00 0.00 0.00 2.52
6073 6687 3.195825 GTCAGGTACTAAGGTGTGCTGAT 59.804 47.826 0.00 0.00 36.02 2.90
6074 6688 2.561419 GTCAGGTACTAAGGTGTGCTGA 59.439 50.000 0.00 0.00 36.02 4.26
6087 6701 4.927978 ATGAGCAGTGATAGTCAGGTAC 57.072 45.455 0.00 0.00 0.00 3.34
6112 6726 6.437477 TCTTTGATCCGGTCATGCTACTATAT 59.563 38.462 0.00 0.00 36.54 0.86
6126 6740 7.559590 AATAGAGTGAAAATCTTTGATCCGG 57.440 36.000 0.00 0.00 38.70 5.14
6131 6745 9.793259 ACACCTTAATAGAGTGAAAATCTTTGA 57.207 29.630 0.00 0.00 38.70 2.69
6135 6749 9.442047 CAGAACACCTTAATAGAGTGAAAATCT 57.558 33.333 0.00 0.00 46.62 2.40
6136 6750 8.178313 GCAGAACACCTTAATAGAGTGAAAATC 58.822 37.037 0.00 0.00 35.47 2.17
6137 6751 7.885399 AGCAGAACACCTTAATAGAGTGAAAAT 59.115 33.333 0.00 0.00 35.47 1.82
6138 6752 7.224297 AGCAGAACACCTTAATAGAGTGAAAA 58.776 34.615 0.00 0.00 35.47 2.29
6146 6781 8.616076 CCAAATAAGAGCAGAACACCTTAATAG 58.384 37.037 0.00 0.00 0.00 1.73
6208 6843 3.059352 CCAGGTGGTGAGGAAGTTAAG 57.941 52.381 0.00 0.00 0.00 1.85
6285 6924 2.409975 GGACGATCCACTGAAAAACGA 58.590 47.619 0.00 0.00 36.28 3.85
6286 6925 1.463444 GGGACGATCCACTGAAAAACG 59.537 52.381 6.41 0.00 38.64 3.60
6287 6926 1.810755 GGGGACGATCCACTGAAAAAC 59.189 52.381 6.41 0.00 36.87 2.43
6321 6960 0.254178 TAGAGGGACGTTCGGCTACT 59.746 55.000 0.00 0.00 0.00 2.57
6396 7035 0.537143 AAGATGCAAGGGCGTTGACA 60.537 50.000 22.92 18.67 45.35 3.58
6583 7222 3.898482 ACACCATTATTACCCAAGAGGC 58.102 45.455 0.00 0.00 40.58 4.70
6809 7450 2.751436 CCATTGGGACAGCCGGTG 60.751 66.667 1.90 2.53 42.39 4.94
6849 7490 8.357796 TCTATGCATCTTTAGAAAATCTGACG 57.642 34.615 0.19 0.00 0.00 4.35
6947 7810 1.149077 AGTTGGTATTGGGCCTTTGGT 59.851 47.619 4.53 0.00 0.00 3.67
7019 7882 6.130569 ACTAAAACCACACCACTTATTTCCA 58.869 36.000 0.00 0.00 0.00 3.53
7033 7896 8.245701 TGACAAACAATTTGAACTAAAACCAC 57.754 30.769 8.24 0.00 43.26 4.16
7067 7930 1.067354 CAGGTTTCATGCTTTCCCTGC 60.067 52.381 0.00 0.00 33.71 4.85
7068 7931 2.490903 CTCAGGTTTCATGCTTTCCCTG 59.509 50.000 0.00 0.00 40.63 4.45
7069 7932 2.800250 CTCAGGTTTCATGCTTTCCCT 58.200 47.619 0.00 0.00 0.00 4.20
7070 7933 1.203287 GCTCAGGTTTCATGCTTTCCC 59.797 52.381 0.00 0.00 0.00 3.97
7071 7934 2.165998 AGCTCAGGTTTCATGCTTTCC 58.834 47.619 0.00 0.00 0.00 3.13
7072 7935 5.573337 ATTAGCTCAGGTTTCATGCTTTC 57.427 39.130 0.00 0.00 35.47 2.62
7073 7936 5.717119 CAATTAGCTCAGGTTTCATGCTTT 58.283 37.500 0.00 0.00 35.47 3.51
7074 7937 4.381292 GCAATTAGCTCAGGTTTCATGCTT 60.381 41.667 0.00 0.00 41.15 3.91
7075 7938 3.129988 GCAATTAGCTCAGGTTTCATGCT 59.870 43.478 0.00 0.00 41.15 3.79
7076 7939 3.119388 TGCAATTAGCTCAGGTTTCATGC 60.119 43.478 0.00 0.00 45.94 4.06
7126 7999 8.558700 TCCCGTTGAACTAGTTTAAATTTGTAC 58.441 33.333 13.81 1.00 0.00 2.90
7151 8024 0.179215 CGGCAAAAGTGATCACGCTC 60.179 55.000 19.85 10.05 35.69 5.03
7154 8027 0.110238 CCACGGCAAAAGTGATCACG 60.110 55.000 19.85 9.01 41.83 4.35
7176 8049 1.067821 GACTAGACCATTCAGGAGGCG 59.932 57.143 0.00 0.00 41.22 5.52
7183 8056 4.523173 ACACGAAAGAGACTAGACCATTCA 59.477 41.667 0.00 0.00 0.00 2.57
7185 8058 5.221461 ACAACACGAAAGAGACTAGACCATT 60.221 40.000 0.00 0.00 0.00 3.16
7187 8060 3.635373 ACAACACGAAAGAGACTAGACCA 59.365 43.478 0.00 0.00 0.00 4.02
7190 8063 5.509716 TTGACAACACGAAAGAGACTAGA 57.490 39.130 0.00 0.00 0.00 2.43
7198 8071 1.002468 CCCTGCTTGACAACACGAAAG 60.002 52.381 0.00 0.00 0.00 2.62
7199 8072 1.021202 CCCTGCTTGACAACACGAAA 58.979 50.000 0.00 0.00 0.00 3.46
7240 8122 0.913924 TCAGGCAGATGCATCCAGAA 59.086 50.000 23.06 1.69 44.36 3.02
7258 8229 2.027192 TGAAGAGTACATGGCCAACCTC 60.027 50.000 10.96 12.68 36.63 3.85
7286 8257 4.336993 TGTACATGAAAACAAGAGGCGTTT 59.663 37.500 0.00 0.00 38.19 3.60
7387 8359 8.999431 CACATTGTACTTTTTCAGTATACACCT 58.001 33.333 5.50 0.00 40.29 4.00
7388 8360 8.780249 ACACATTGTACTTTTTCAGTATACACC 58.220 33.333 5.50 0.00 40.29 4.16
7464 8436 5.721000 TCAGGAACATTTCTTTATGCCCATT 59.279 36.000 0.00 0.00 0.00 3.16
7468 8440 6.212888 ACATCAGGAACATTTCTTTATGCC 57.787 37.500 0.00 0.00 0.00 4.40
7559 8539 8.995419 TTTTTCTTTTCTTGTTTTGTTTTCGG 57.005 26.923 0.00 0.00 0.00 4.30
7588 8570 5.238650 ACTGTTTGCGCTAGTTTTCTATTGT 59.761 36.000 9.73 0.00 0.00 2.71
7589 8571 5.565259 CACTGTTTGCGCTAGTTTTCTATTG 59.435 40.000 9.73 0.00 0.00 1.90
7600 8582 4.274705 TCAGATTTTTCACTGTTTGCGCTA 59.725 37.500 9.73 0.00 35.84 4.26
7603 8588 7.022979 TCATATCAGATTTTTCACTGTTTGCG 58.977 34.615 0.00 0.00 35.84 4.85
7658 8643 1.508088 GCCGCTGGTTTTCTCCATG 59.492 57.895 0.00 0.00 36.84 3.66
7660 8645 2.668212 CGCCGCTGGTTTTCTCCA 60.668 61.111 0.00 0.00 36.00 3.86
7682 8667 1.276421 GGAAGCAGCTACAGAACCAGA 59.724 52.381 0.00 0.00 0.00 3.86
7686 8671 1.443802 GGTGGAAGCAGCTACAGAAC 58.556 55.000 0.00 0.00 0.00 3.01
7691 8676 0.393132 GAAGGGGTGGAAGCAGCTAC 60.393 60.000 0.00 0.00 34.77 3.58
7696 8681 4.344865 GGCGAAGGGGTGGAAGCA 62.345 66.667 0.00 0.00 34.77 3.91
7784 8770 0.951558 GTTGGGCTTTTTCAGAGCGA 59.048 50.000 0.00 0.00 41.03 4.93
7803 8789 1.455383 GGGCCCGATTAAGTGCCATG 61.455 60.000 5.69 0.00 45.83 3.66
7805 8791 2.143575 TTGGGCCCGATTAAGTGCCA 62.144 55.000 19.37 0.00 45.83 4.92
7809 8795 0.988832 TGAGTTGGGCCCGATTAAGT 59.011 50.000 17.05 7.39 0.00 2.24
7836 8822 0.541392 AGAGTACATGGCAATGGCGA 59.459 50.000 5.94 0.00 42.47 5.54
7837 8823 1.331756 GAAGAGTACATGGCAATGGCG 59.668 52.381 5.94 0.00 42.47 5.69
7840 8826 3.614092 AGGTGAAGAGTACATGGCAATG 58.386 45.455 0.00 0.00 39.89 2.82
7841 8827 3.521126 AGAGGTGAAGAGTACATGGCAAT 59.479 43.478 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.