Multiple sequence alignment - TraesCS5B01G334600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G334600 chr5B 100.000 4875 0 0 1 4875 517859309 517854435 0.000000e+00 9003.0
1 TraesCS5B01G334600 chr5D 92.567 3417 139 42 1518 4875 428707907 428704547 0.000000e+00 4796.0
2 TraesCS5B01G334600 chr5D 88.544 1580 90 42 1 1517 428709508 428707957 0.000000e+00 1831.0
3 TraesCS5B01G334600 chr5D 88.608 79 4 3 556 633 24980567 24980641 1.870000e-14 91.6
4 TraesCS5B01G334600 chr5A 91.555 2688 130 41 1518 4162 544540103 544537470 0.000000e+00 3616.0
5 TraesCS5B01G334600 chr5A 85.307 1334 87 49 249 1524 544541421 544540139 0.000000e+00 1277.0
6 TraesCS5B01G334600 chr5A 84.808 520 40 19 4376 4859 544536065 544535549 2.040000e-133 486.0
7 TraesCS5B01G334600 chr6D 88.845 251 17 9 4226 4468 168246909 168246662 1.030000e-76 298.0
8 TraesCS5B01G334600 chrUn 88.889 243 17 8 4226 4460 93416632 93416872 1.720000e-74 291.0
9 TraesCS5B01G334600 chr7D 88.889 243 17 8 4226 4460 231557873 231558113 1.720000e-74 291.0
10 TraesCS5B01G334600 chr7D 85.000 140 19 2 1 139 32247331 32247193 1.830000e-29 141.0
11 TraesCS5B01G334600 chr7B 88.142 253 18 9 4226 4468 559140691 559140441 1.720000e-74 291.0
12 TraesCS5B01G334600 chr3B 88.934 244 16 8 4226 4460 201522388 201522147 1.720000e-74 291.0
13 TraesCS5B01G334600 chr3B 77.519 129 24 4 3 129 703306350 703306225 6.770000e-09 73.1
14 TraesCS5B01G334600 chr1D 88.189 254 17 9 4226 4468 144238417 144238166 1.720000e-74 291.0
15 TraesCS5B01G334600 chr1D 88.889 243 17 8 4226 4460 254521440 254521200 1.720000e-74 291.0
16 TraesCS5B01G334600 chr1A 88.189 254 17 9 4226 4468 584778823 584778572 1.720000e-74 291.0
17 TraesCS5B01G334600 chr7A 86.719 128 15 2 1 128 694345708 694345583 1.830000e-29 141.0
18 TraesCS5B01G334600 chr4D 82.946 129 21 1 1 129 8363207 8363080 1.110000e-21 115.0
19 TraesCS5B01G334600 chr2D 87.179 78 6 2 556 633 645734976 645735049 8.690000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G334600 chr5B 517854435 517859309 4874 True 9003.0 9003 100.000000 1 4875 1 chr5B.!!$R1 4874
1 TraesCS5B01G334600 chr5D 428704547 428709508 4961 True 3313.5 4796 90.555500 1 4875 2 chr5D.!!$R1 4874
2 TraesCS5B01G334600 chr5A 544535549 544541421 5872 True 1793.0 3616 87.223333 249 4859 3 chr5A.!!$R1 4610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.181587 TTCTTTCCACGACCAGCCAA 59.818 50.0 0.00 0.00 0.00 4.52 F
380 381 1.236708 TAGGAAGGGAGGAGGAGAGG 58.763 60.0 0.00 0.00 0.00 3.69 F
1341 1392 0.105658 CCCTCTTCCAGGTATCCGGA 60.106 60.0 6.61 6.61 41.51 5.14 F
3193 3372 0.252696 AGAGGTGGCTATGGTGGTCA 60.253 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1256 0.469917 CTGGTACCGATCCATGGCTT 59.530 55.0 6.96 0.0 34.26 4.35 R
1384 1452 1.024579 AAACCCACAGCTTATCGCCG 61.025 55.0 0.00 0.0 40.39 6.46 R
3182 3361 0.107508 CACCAGGCTGACCACCATAG 60.108 60.0 17.94 0.0 39.06 2.23 R
4195 4379 0.034089 ACAAGGCAGGCCCATAGTTC 60.034 55.0 6.70 0.0 36.58 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 0.257039 ATGGTTTGGCTAGGCTCTGG 59.743 55.000 18.18 0.00 0.00 3.86
57 58 2.588989 GCTCTGGCCCAGAAGAGG 59.411 66.667 15.67 4.03 40.18 3.69
63 64 1.301293 GGCCCAGAAGAGGTCTTGG 59.699 63.158 0.00 0.00 41.34 3.61
151 152 2.493675 ACTCGCATTTGAGCTCTCTACA 59.506 45.455 16.19 0.00 39.68 2.74
156 157 3.242673 GCATTTGAGCTCTCTACATGCAC 60.243 47.826 16.19 0.00 33.75 4.57
162 163 1.929836 GCTCTCTACATGCACGGAAAG 59.070 52.381 0.00 0.00 0.00 2.62
185 186 0.953960 GGCAGTACAACCCCACGAAG 60.954 60.000 0.00 0.00 0.00 3.79
207 208 0.181587 TTCTTTCCACGACCAGCCAA 59.818 50.000 0.00 0.00 0.00 4.52
218 219 2.120274 CAGCCAACCCAACCCCAT 59.880 61.111 0.00 0.00 0.00 4.00
272 273 6.581388 TGACCCCAAGAATCTGAATATTCT 57.419 37.500 16.24 0.00 45.91 2.40
275 276 5.135383 CCCCAAGAATCTGAATATTCTGCA 58.865 41.667 16.24 6.90 43.75 4.41
371 372 8.887264 ATCAATGTAGTACTATAGGAAGGGAG 57.113 38.462 5.75 0.00 0.00 4.30
380 381 1.236708 TAGGAAGGGAGGAGGAGAGG 58.763 60.000 0.00 0.00 0.00 3.69
406 416 9.915629 GTAGAGACCGATCATTATCAAAATAGT 57.084 33.333 0.00 0.00 31.93 2.12
407 417 8.824159 AGAGACCGATCATTATCAAAATAGTG 57.176 34.615 0.00 0.00 31.93 2.74
408 418 8.424918 AGAGACCGATCATTATCAAAATAGTGT 58.575 33.333 0.00 0.00 31.93 3.55
490 500 6.267496 ACAAAACAAGTTAGCAAAGTCACT 57.733 33.333 0.00 0.00 0.00 3.41
502 512 5.585390 AGCAAAGTCACTCACAAAATGAAG 58.415 37.500 0.00 0.00 36.69 3.02
512 522 8.993121 TCACTCACAAAATGAAGACTATCTTTC 58.007 33.333 0.00 0.00 36.73 2.62
569 580 3.148340 CCGGTCCGGTCCTTTTTAG 57.852 57.895 23.02 0.00 42.73 1.85
585 596 8.405531 GTCCTTTTTAGTCTGCATGCATATAAA 58.594 33.333 22.97 20.95 0.00 1.40
721 758 4.977741 CGTAAGTAACCATCGTGTGTTT 57.022 40.909 0.00 0.00 0.00 2.83
722 759 5.333046 CGTAAGTAACCATCGTGTGTTTT 57.667 39.130 0.00 0.00 0.00 2.43
723 760 5.134640 CGTAAGTAACCATCGTGTGTTTTG 58.865 41.667 0.00 0.00 0.00 2.44
724 761 5.276963 CGTAAGTAACCATCGTGTGTTTTGT 60.277 40.000 0.00 0.00 0.00 2.83
725 762 5.570234 AAGTAACCATCGTGTGTTTTGTT 57.430 34.783 0.00 0.00 0.00 2.83
726 763 6.680874 AAGTAACCATCGTGTGTTTTGTTA 57.319 33.333 0.00 0.00 0.00 2.41
727 764 6.870971 AGTAACCATCGTGTGTTTTGTTAT 57.129 33.333 0.00 0.00 0.00 1.89
728 765 6.894828 AGTAACCATCGTGTGTTTTGTTATC 58.105 36.000 0.00 0.00 0.00 1.75
729 766 4.398549 ACCATCGTGTGTTTTGTTATCG 57.601 40.909 0.00 0.00 0.00 2.92
730 767 4.059511 ACCATCGTGTGTTTTGTTATCGA 58.940 39.130 0.00 0.00 0.00 3.59
740 777 4.994852 TGTTTTGTTATCGAGTCCTTGGAG 59.005 41.667 0.00 0.00 0.00 3.86
741 778 3.887621 TTGTTATCGAGTCCTTGGAGG 57.112 47.619 0.00 0.00 36.46 4.30
838 875 3.775654 CCAGAGGCCGTCCCAGAC 61.776 72.222 0.00 0.00 35.39 3.51
901 938 2.396157 CCGCAAAACCCTAGACGCC 61.396 63.158 0.00 0.00 0.00 5.68
1034 1071 4.892965 ACAAGCCGCCAGCCAACA 62.893 61.111 0.00 0.00 45.47 3.33
1336 1387 1.584724 CACCACCCTCTTCCAGGTAT 58.415 55.000 0.00 0.00 41.51 2.73
1338 1389 1.132500 CCACCCTCTTCCAGGTATCC 58.868 60.000 0.00 0.00 41.51 2.59
1339 1390 0.753262 CACCCTCTTCCAGGTATCCG 59.247 60.000 0.00 0.00 41.51 4.18
1340 1391 0.398664 ACCCTCTTCCAGGTATCCGG 60.399 60.000 0.00 0.00 41.51 5.14
1341 1392 0.105658 CCCTCTTCCAGGTATCCGGA 60.106 60.000 6.61 6.61 41.51 5.14
1342 1393 1.333177 CCTCTTCCAGGTATCCGGAG 58.667 60.000 11.34 0.00 37.53 4.63
1343 1394 1.411787 CCTCTTCCAGGTATCCGGAGT 60.412 57.143 11.34 0.48 37.53 3.85
1345 1396 1.006758 TCTTCCAGGTATCCGGAGTGT 59.993 52.381 11.34 0.00 30.67 3.55
1347 1398 1.144057 CCAGGTATCCGGAGTGTGC 59.856 63.158 11.34 0.00 0.00 4.57
1348 1399 1.330655 CCAGGTATCCGGAGTGTGCT 61.331 60.000 11.34 0.00 0.00 4.40
1349 1400 0.537188 CAGGTATCCGGAGTGTGCTT 59.463 55.000 11.34 0.00 0.00 3.91
1350 1401 1.066143 CAGGTATCCGGAGTGTGCTTT 60.066 52.381 11.34 0.00 0.00 3.51
1352 1403 2.007608 GGTATCCGGAGTGTGCTTTTC 58.992 52.381 11.34 0.00 0.00 2.29
1353 1404 1.659098 GTATCCGGAGTGTGCTTTTCG 59.341 52.381 11.34 0.00 0.00 3.46
1355 1406 2.556287 CGGAGTGTGCTTTTCGCC 59.444 61.111 0.00 0.00 38.05 5.54
1356 1407 1.961277 CGGAGTGTGCTTTTCGCCT 60.961 57.895 0.00 0.00 38.05 5.52
1357 1408 1.576421 GGAGTGTGCTTTTCGCCTG 59.424 57.895 0.00 0.00 38.05 4.85
1358 1409 1.166531 GGAGTGTGCTTTTCGCCTGT 61.167 55.000 0.00 0.00 38.05 4.00
1359 1410 0.663153 GAGTGTGCTTTTCGCCTGTT 59.337 50.000 0.00 0.00 38.05 3.16
1384 1452 4.389576 CGCGCTTGTGGCCTGTTC 62.390 66.667 5.56 0.00 37.74 3.18
1401 1469 2.186903 CGGCGATAAGCTGTGGGT 59.813 61.111 0.00 0.00 46.91 4.51
1404 1472 1.741055 CGGCGATAAGCTGTGGGTTTA 60.741 52.381 0.00 0.00 46.91 2.01
1405 1473 3.623694 CGGCGATAAGCTGTGGGTTTAG 61.624 54.545 0.00 0.00 46.91 1.85
1406 1474 2.629051 GCGATAAGCTGTGGGTTTAGT 58.371 47.619 0.00 0.00 44.04 2.24
1407 1475 3.007635 GCGATAAGCTGTGGGTTTAGTT 58.992 45.455 0.00 0.00 44.04 2.24
1408 1476 3.439129 GCGATAAGCTGTGGGTTTAGTTT 59.561 43.478 0.00 0.00 44.04 2.66
1409 1477 4.632688 GCGATAAGCTGTGGGTTTAGTTTA 59.367 41.667 0.00 0.00 44.04 2.01
1410 1478 5.220605 GCGATAAGCTGTGGGTTTAGTTTAG 60.221 44.000 0.00 0.00 44.04 1.85
1419 1487 5.134169 TGTGGGTTTAGTTTAGGTTTAGGGT 59.866 40.000 0.00 0.00 0.00 4.34
1420 1488 5.474532 GTGGGTTTAGTTTAGGTTTAGGGTG 59.525 44.000 0.00 0.00 0.00 4.61
1423 1491 6.240147 GGGTTTAGTTTAGGTTTAGGGTGGTA 60.240 42.308 0.00 0.00 0.00 3.25
1425 1493 7.890127 GGTTTAGTTTAGGTTTAGGGTGGTATT 59.110 37.037 0.00 0.00 0.00 1.89
1427 1495 8.866970 TTAGTTTAGGTTTAGGGTGGTATTTG 57.133 34.615 0.00 0.00 0.00 2.32
1432 1500 5.718039 AGGTTTAGGGTGGTATTTGGAAAA 58.282 37.500 0.00 0.00 0.00 2.29
1445 1513 7.069331 TGGTATTTGGAAAATTAGCCGAATGAT 59.931 33.333 16.69 1.48 38.44 2.45
1448 1516 4.681744 TGGAAAATTAGCCGAATGATTGC 58.318 39.130 0.00 0.00 0.00 3.56
1449 1517 3.730715 GGAAAATTAGCCGAATGATTGCG 59.269 43.478 0.00 0.00 0.00 4.85
1450 1518 2.405892 AATTAGCCGAATGATTGCGC 57.594 45.000 0.00 0.00 0.00 6.09
1451 1519 1.597742 ATTAGCCGAATGATTGCGCT 58.402 45.000 9.73 1.78 0.00 5.92
1453 1521 1.775039 TAGCCGAATGATTGCGCTGC 61.775 55.000 9.73 0.00 0.00 5.25
1454 1522 2.793272 CCGAATGATTGCGCTGCA 59.207 55.556 9.73 4.20 36.47 4.41
1457 1525 1.584483 GAATGATTGCGCTGCACGG 60.584 57.895 9.73 0.00 43.93 4.94
1459 1527 1.378882 AATGATTGCGCTGCACGGAT 61.379 50.000 9.73 0.00 43.70 4.18
1460 1528 1.378882 ATGATTGCGCTGCACGGATT 61.379 50.000 9.73 4.58 43.70 3.01
1473 1541 4.954933 GGATTGCCGGACTTGCTA 57.045 55.556 5.05 0.00 0.00 3.49
1474 1542 3.403936 GGATTGCCGGACTTGCTAT 57.596 52.632 5.05 0.00 0.00 2.97
1475 1543 1.680338 GGATTGCCGGACTTGCTATT 58.320 50.000 5.05 0.00 0.00 1.73
1476 1544 2.846193 GGATTGCCGGACTTGCTATTA 58.154 47.619 5.05 0.00 0.00 0.98
1504 1581 1.044725 GCGTGTGTTTTCAATGCGAG 58.955 50.000 0.00 0.00 0.00 5.03
1510 1587 3.254411 TGTGTTTTCAATGCGAGCCATTA 59.746 39.130 0.00 0.00 42.15 1.90
1526 1652 5.941788 AGCCATTAATTCGAGGTAGGATTT 58.058 37.500 0.00 0.00 0.00 2.17
1533 1659 5.677319 ATTCGAGGTAGGATTTGTTCTGA 57.323 39.130 0.00 0.00 0.00 3.27
1603 1731 1.535462 GCGATGGCTTTTACTGTGTGT 59.465 47.619 0.00 0.00 35.83 3.72
1688 1816 7.224949 TCGTACAGATAGATGTTGTACTCTCAG 59.775 40.741 10.98 0.00 42.99 3.35
1713 1841 5.415221 GGGTGTGATTTGTCACTTCAAAAA 58.585 37.500 9.64 0.00 40.05 1.94
1714 1842 5.290885 GGGTGTGATTTGTCACTTCAAAAAC 59.709 40.000 9.64 0.00 40.05 2.43
1717 1845 6.534793 GTGTGATTTGTCACTTCAAAAACCAT 59.465 34.615 9.64 0.00 40.05 3.55
1721 1849 7.492020 TGATTTGTCACTTCAAAAACCATTGAG 59.508 33.333 0.00 0.00 40.21 3.02
1722 1850 4.681744 TGTCACTTCAAAAACCATTGAGC 58.318 39.130 0.00 0.00 40.21 4.26
1730 1858 6.349243 TCAAAAACCATTGAGCAATCTGAT 57.651 33.333 0.00 0.00 34.50 2.90
1746 1874 2.203153 ATATCGTGTTGGGCCGCC 60.203 61.111 0.00 0.00 0.00 6.13
1780 1908 1.600023 CCACTTTTTGTACGGCCAGA 58.400 50.000 2.24 0.00 0.00 3.86
1784 1912 2.218603 CTTTTTGTACGGCCAGACACT 58.781 47.619 2.24 0.00 0.00 3.55
1875 2006 5.333798 CGTTAGTCACGTCCATGTTTTGATT 60.334 40.000 0.00 0.00 44.49 2.57
1880 2011 7.657336 AGTCACGTCCATGTTTTGATTATTTT 58.343 30.769 0.00 0.00 0.00 1.82
1894 2026 5.904941 TGATTATTTTGCCTGATGCGATTT 58.095 33.333 0.00 0.00 45.60 2.17
1904 2036 4.274459 GCCTGATGCGATTTATGAGTTTCT 59.726 41.667 0.00 0.00 0.00 2.52
1907 2039 7.253422 CCTGATGCGATTTATGAGTTTCTTTT 58.747 34.615 0.00 0.00 0.00 2.27
1908 2040 7.219535 CCTGATGCGATTTATGAGTTTCTTTTG 59.780 37.037 0.00 0.00 0.00 2.44
1909 2041 7.815641 TGATGCGATTTATGAGTTTCTTTTGA 58.184 30.769 0.00 0.00 0.00 2.69
1910 2042 8.296000 TGATGCGATTTATGAGTTTCTTTTGAA 58.704 29.630 0.00 0.00 36.52 2.69
2042 2189 3.126858 GCGATGAAGTTGTATTCAAGGCA 59.873 43.478 9.03 0.00 42.21 4.75
2212 2359 2.030540 CCATCAAAACACTGCCACTGAG 60.031 50.000 0.00 0.00 0.00 3.35
2277 2424 4.334759 CCTACTTCCGTAAGAATCGACTCA 59.665 45.833 0.00 0.00 43.02 3.41
2286 2433 6.454318 CCGTAAGAATCGACTCAAAACATCTG 60.454 42.308 0.00 0.00 43.02 2.90
2412 2574 6.051717 ACAAGGCATGTGTCTATGATTACTC 58.948 40.000 0.00 0.00 41.93 2.59
2463 2630 0.969894 ATCTGTCGGGTATGCTAGCC 59.030 55.000 13.29 0.00 42.81 3.93
2651 2827 6.055588 GGCACAACTATTAGCTATCTGGAAA 58.944 40.000 0.00 0.00 0.00 3.13
2693 2869 6.660521 TCAAACTGGATTATTCTTCTGCATGT 59.339 34.615 0.00 0.00 0.00 3.21
2697 2873 8.757982 ACTGGATTATTCTTCTGCATGTAATT 57.242 30.769 0.00 0.00 0.00 1.40
2710 2886 9.461312 TTCTGCATGTAATTATAGGTTGAGTTT 57.539 29.630 0.00 0.00 0.00 2.66
2711 2887 9.109393 TCTGCATGTAATTATAGGTTGAGTTTC 57.891 33.333 0.00 0.00 0.00 2.78
2764 2940 1.264288 CTGACAAGGTGAAGCCGTTTC 59.736 52.381 0.00 0.00 43.70 2.78
2793 2969 4.192317 ACGAGAATGAAGAAGGTATTGGC 58.808 43.478 0.00 0.00 0.00 4.52
2813 2989 2.414824 GCCACGTTTCACTTTGTTGTCA 60.415 45.455 0.00 0.00 0.00 3.58
2825 3001 8.196802 TCACTTTGTTGTCATTATTATCTCCG 57.803 34.615 0.00 0.00 0.00 4.63
2871 3047 2.857748 TGTAATTGTAGATGCGCACTCG 59.142 45.455 14.90 0.00 39.07 4.18
3013 3192 5.550232 TGTGCAGCTGTTCATTACATAAG 57.450 39.130 16.64 0.00 35.85 1.73
3129 3308 4.562767 TGGTCCAGCTTATGAGGGTAATA 58.437 43.478 0.00 0.00 0.00 0.98
3137 3316 5.105310 AGCTTATGAGGGTAATAGGTATGCG 60.105 44.000 0.00 0.00 0.00 4.73
3180 3359 4.767255 GCCGTGGCAGGAGAGGTG 62.767 72.222 9.09 0.00 41.49 4.00
3181 3360 4.087892 CCGTGGCAGGAGAGGTGG 62.088 72.222 9.09 0.00 0.00 4.61
3182 3361 4.767255 CGTGGCAGGAGAGGTGGC 62.767 72.222 0.00 0.00 40.81 5.01
3183 3362 3.325753 GTGGCAGGAGAGGTGGCT 61.326 66.667 0.00 0.00 41.01 4.75
3184 3363 1.990060 GTGGCAGGAGAGGTGGCTA 60.990 63.158 0.00 0.00 41.01 3.93
3185 3364 1.003442 TGGCAGGAGAGGTGGCTAT 59.997 57.895 0.00 0.00 41.01 2.97
3186 3365 1.340399 TGGCAGGAGAGGTGGCTATG 61.340 60.000 0.00 0.00 41.01 2.23
3187 3366 1.449353 GCAGGAGAGGTGGCTATGG 59.551 63.158 0.00 0.00 0.00 2.74
3188 3367 1.341156 GCAGGAGAGGTGGCTATGGT 61.341 60.000 0.00 0.00 0.00 3.55
3189 3368 0.467384 CAGGAGAGGTGGCTATGGTG 59.533 60.000 0.00 0.00 0.00 4.17
3190 3369 0.692419 AGGAGAGGTGGCTATGGTGG 60.692 60.000 0.00 0.00 0.00 4.61
3191 3370 0.983378 GGAGAGGTGGCTATGGTGGT 60.983 60.000 0.00 0.00 0.00 4.16
3192 3371 0.466124 GAGAGGTGGCTATGGTGGTC 59.534 60.000 0.00 0.00 0.00 4.02
3193 3372 0.252696 AGAGGTGGCTATGGTGGTCA 60.253 55.000 0.00 0.00 0.00 4.02
3194 3373 0.179000 GAGGTGGCTATGGTGGTCAG 59.821 60.000 0.00 0.00 0.00 3.51
3195 3374 1.452108 GGTGGCTATGGTGGTCAGC 60.452 63.158 0.00 0.00 34.48 4.26
3365 3544 1.343789 GGAGGTTATTACGAGGAGGCC 59.656 57.143 0.00 0.00 0.00 5.19
3435 3614 5.372343 TTGGTTGTATGCATCTATGTCCT 57.628 39.130 0.19 0.00 0.00 3.85
3586 3768 2.190578 GGGCGCATAAGCAGTCCT 59.809 61.111 10.83 0.00 42.27 3.85
3589 3771 0.533755 GGCGCATAAGCAGTCCTCAT 60.534 55.000 10.83 0.00 42.27 2.90
3598 3780 1.815196 CAGTCCTCATCTCGCTGCT 59.185 57.895 0.00 0.00 0.00 4.24
3601 3783 0.108424 GTCCTCATCTCGCTGCTGTT 60.108 55.000 0.00 0.00 0.00 3.16
4180 4364 2.435805 TCACAGGGAGCCATCTCATTAC 59.564 50.000 0.00 0.00 41.13 1.89
4246 4460 9.026121 TCTAGGAAGACAGTATAATAATCTGCC 57.974 37.037 3.40 3.40 35.55 4.85
4262 4476 4.094830 TCTGCCATGATGACAATGCTAT 57.905 40.909 0.00 0.00 0.00 2.97
4268 4482 5.184479 GCCATGATGACAATGCTATGGTTAT 59.816 40.000 0.00 0.00 37.85 1.89
4332 4659 1.332997 GCGATTGCTGAGGAAATGAGG 59.667 52.381 0.00 0.00 38.39 3.86
4368 4695 7.830739 ACCAAAATAGTTTCATTAGCTCTTGG 58.169 34.615 0.00 0.00 0.00 3.61
4374 5752 8.950208 ATAGTTTCATTAGCTCTTGGAAGTAC 57.050 34.615 0.00 0.00 0.00 2.73
4487 5875 2.104928 CTCGGCGCTGATACTGCA 59.895 61.111 21.31 0.00 0.00 4.41
4615 6003 3.126831 GAGCTTCTGCATGTATAACGCT 58.873 45.455 0.00 0.59 42.74 5.07
4617 6005 3.941483 AGCTTCTGCATGTATAACGCTTT 59.059 39.130 0.00 0.00 42.74 3.51
4621 6009 3.871006 TCTGCATGTATAACGCTTTCCTG 59.129 43.478 0.00 0.00 0.00 3.86
4627 6015 0.618458 ATAACGCTTTCCTGGCCTCA 59.382 50.000 3.32 0.00 0.00 3.86
4638 6026 3.064324 GGCCTCAGCGGTGCATTT 61.064 61.111 10.38 0.00 41.24 2.32
4644 6032 2.223340 CCTCAGCGGTGCATTTTACATC 60.223 50.000 10.38 0.00 0.00 3.06
4704 6092 0.596577 TCGTACCTCCATGCTATCGC 59.403 55.000 0.00 0.00 0.00 4.58
4748 6160 3.356639 GATGTCTCGCCCTCGCACA 62.357 63.158 0.00 0.00 34.35 4.57
4765 6177 0.736636 ACATGATCTCGACGGCGTAA 59.263 50.000 14.74 2.97 38.98 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.821216 AGCCAAACCATAGTTCGGTG 58.179 50.000 0.00 0.00 36.67 4.94
22 23 3.118223 AGAGCCTAGCCAAACCATAGTTC 60.118 47.826 0.00 0.00 34.19 3.01
46 47 0.693049 TTCCAAGACCTCTTCTGGGC 59.307 55.000 0.00 0.00 44.76 5.36
57 58 2.640316 AGTCCCACAAGTTCCAAGAC 57.360 50.000 0.00 0.00 0.00 3.01
63 64 8.258708 AGTATTACAATCTAGTCCCACAAGTTC 58.741 37.037 0.00 0.00 0.00 3.01
95 96 6.863230 CGAAATAAATTCTCGCATTACTCGA 58.137 36.000 0.00 0.00 35.79 4.04
128 129 4.339530 TGTAGAGAGCTCAAATGCGAGTAT 59.660 41.667 17.77 0.00 38.13 2.12
129 130 3.694566 TGTAGAGAGCTCAAATGCGAGTA 59.305 43.478 17.77 0.00 38.13 2.59
151 152 1.526575 CTGCCAACCTTTCCGTGCAT 61.527 55.000 0.00 0.00 0.00 3.96
156 157 1.265905 GTTGTACTGCCAACCTTTCCG 59.734 52.381 0.00 0.00 39.01 4.30
185 186 0.169009 GCTGGTCGTGGAAAGAATGC 59.831 55.000 0.00 0.00 0.00 3.56
207 208 0.491371 AATGGTTCATGGGGTTGGGT 59.509 50.000 0.00 0.00 0.00 4.51
236 237 1.280710 TGGGGTCATAAATGCGAGTGT 59.719 47.619 0.00 0.00 0.00 3.55
253 254 5.278364 GCTGCAGAATATTCAGATTCTTGGG 60.278 44.000 20.43 0.00 42.33 4.12
272 273 2.933878 AAAGAACGGTCGGTGCTGCA 62.934 55.000 0.00 0.00 33.55 4.41
275 276 1.301479 GGAAAGAACGGTCGGTGCT 60.301 57.895 0.00 0.00 35.35 4.40
368 369 1.144298 GGTCTCTACCTCTCCTCCTCC 59.856 61.905 0.00 0.00 43.08 4.30
371 372 0.838608 TCGGTCTCTACCTCTCCTCC 59.161 60.000 0.00 0.00 44.35 4.30
380 381 9.915629 ACTATTTTGATAATGATCGGTCTCTAC 57.084 33.333 0.00 0.00 34.49 2.59
406 416 8.927675 ACTTGAATAACCAATTACTAACCACA 57.072 30.769 0.00 0.00 0.00 4.17
476 486 6.494842 TCATTTTGTGAGTGACTTTGCTAAC 58.505 36.000 0.00 0.00 31.80 2.34
490 500 6.371548 CGGGAAAGATAGTCTTCATTTTGTGA 59.628 38.462 0.00 0.00 35.27 3.58
502 512 8.678199 AGAAATTCATTTTCGGGAAAGATAGTC 58.322 33.333 0.00 0.00 46.89 2.59
512 522 5.088739 CGTCTCAAGAAATTCATTTTCGGG 58.911 41.667 0.00 0.00 46.89 5.14
552 563 1.274447 AGACTAAAAAGGACCGGACCG 59.726 52.381 17.44 6.99 34.73 4.79
555 566 1.695242 TGCAGACTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
569 580 7.916977 TCAGACAAATTTTATATGCATGCAGAC 59.083 33.333 26.69 8.40 0.00 3.51
585 596 6.436843 ACGAACTTTGACTTCAGACAAATT 57.563 33.333 5.16 0.00 38.54 1.82
653 680 2.686405 GTTTTCGACCCAACAGGAAGTT 59.314 45.455 0.00 0.00 42.42 2.66
655 682 1.607148 GGTTTTCGACCCAACAGGAAG 59.393 52.381 0.00 0.00 43.06 3.46
656 683 1.682740 GGTTTTCGACCCAACAGGAA 58.317 50.000 0.00 0.00 43.06 3.36
705 742 5.786574 CGATAACAAAACACACGATGGTTAC 59.213 40.000 0.00 0.00 37.17 2.50
706 743 5.695363 TCGATAACAAAACACACGATGGTTA 59.305 36.000 0.00 0.00 37.17 2.85
707 744 4.512198 TCGATAACAAAACACACGATGGTT 59.488 37.500 0.00 0.00 41.26 3.67
708 745 4.059511 TCGATAACAAAACACACGATGGT 58.940 39.130 0.00 0.00 0.00 3.55
710 747 5.264060 ACTCGATAACAAAACACACGATG 57.736 39.130 0.00 0.00 0.00 3.84
711 748 4.387862 GGACTCGATAACAAAACACACGAT 59.612 41.667 0.00 0.00 0.00 3.73
712 749 3.737266 GGACTCGATAACAAAACACACGA 59.263 43.478 0.00 0.00 0.00 4.35
713 750 3.739300 AGGACTCGATAACAAAACACACG 59.261 43.478 0.00 0.00 0.00 4.49
714 751 5.440685 CAAGGACTCGATAACAAAACACAC 58.559 41.667 0.00 0.00 0.00 3.82
715 752 4.513692 CCAAGGACTCGATAACAAAACACA 59.486 41.667 0.00 0.00 0.00 3.72
718 755 4.392138 CCTCCAAGGACTCGATAACAAAAC 59.608 45.833 0.00 0.00 37.67 2.43
719 756 4.564821 CCCTCCAAGGACTCGATAACAAAA 60.565 45.833 0.00 0.00 37.67 2.44
720 757 3.055385 CCCTCCAAGGACTCGATAACAAA 60.055 47.826 0.00 0.00 37.67 2.83
721 758 2.500098 CCCTCCAAGGACTCGATAACAA 59.500 50.000 0.00 0.00 37.67 2.83
722 759 2.108168 CCCTCCAAGGACTCGATAACA 58.892 52.381 0.00 0.00 37.67 2.41
723 760 1.202545 GCCCTCCAAGGACTCGATAAC 60.203 57.143 0.00 0.00 37.67 1.89
724 761 1.120530 GCCCTCCAAGGACTCGATAA 58.879 55.000 0.00 0.00 37.67 1.75
725 762 0.759436 GGCCCTCCAAGGACTCGATA 60.759 60.000 0.00 0.00 37.67 2.92
726 763 2.066999 GGCCCTCCAAGGACTCGAT 61.067 63.158 0.00 0.00 37.67 3.59
727 764 2.683933 GGCCCTCCAAGGACTCGA 60.684 66.667 0.00 0.00 37.67 4.04
728 765 3.787001 GGGCCCTCCAAGGACTCG 61.787 72.222 17.04 0.00 37.67 4.18
729 766 1.916206 GAAGGGCCCTCCAAGGACTC 61.916 65.000 28.84 13.00 37.67 3.36
730 767 1.925972 GAAGGGCCCTCCAAGGACT 60.926 63.158 28.84 6.36 37.67 3.85
770 807 2.584608 CGGCTGGGATTTCTCCGT 59.415 61.111 0.00 0.00 43.11 4.69
838 875 3.676605 GTTCCGGGGTTTTGCGGG 61.677 66.667 0.00 0.00 0.00 6.13
857 894 3.305177 TTACGGAACTGCCCCTCGC 62.305 63.158 0.00 0.00 38.31 5.03
858 895 1.447314 GTTACGGAACTGCCCCTCG 60.447 63.158 2.34 0.00 32.40 4.63
950 987 1.997256 TTTATATGGCCGCCCCCGTT 61.997 55.000 7.03 0.00 0.00 4.44
1032 1069 2.203098 CGGTCCGGTGGTTTGTGT 60.203 61.111 2.34 0.00 0.00 3.72
1189 1240 4.728110 TTCCTCCGGTCGGCTCGA 62.728 66.667 0.00 0.00 34.68 4.04
1196 1247 1.700042 ATCCATGGCTTCCTCCGGTC 61.700 60.000 6.96 0.00 0.00 4.79
1197 1248 1.694169 ATCCATGGCTTCCTCCGGT 60.694 57.895 6.96 0.00 0.00 5.28
1199 1250 1.301244 CGATCCATGGCTTCCTCCG 60.301 63.158 6.96 0.00 0.00 4.63
1205 1256 0.469917 CTGGTACCGATCCATGGCTT 59.530 55.000 6.96 0.00 34.26 4.35
1336 1387 4.354155 CGAAAAGCACACTCCGGA 57.646 55.556 2.93 2.93 0.00 5.14
1369 1437 3.726517 CCGAACAGGCCACAAGCG 61.727 66.667 5.01 1.30 45.17 4.68
1382 1450 1.153449 CCCACAGCTTATCGCCGAA 60.153 57.895 0.00 0.00 40.39 4.30
1384 1452 1.024579 AAACCCACAGCTTATCGCCG 61.025 55.000 0.00 0.00 40.39 6.46
1395 1463 5.134169 ACCCTAAACCTAAACTAAACCCACA 59.866 40.000 0.00 0.00 0.00 4.17
1401 1469 9.299465 CAAATACCACCCTAAACCTAAACTAAA 57.701 33.333 0.00 0.00 0.00 1.85
1404 1472 6.045813 TCCAAATACCACCCTAAACCTAAACT 59.954 38.462 0.00 0.00 0.00 2.66
1405 1473 6.247676 TCCAAATACCACCCTAAACCTAAAC 58.752 40.000 0.00 0.00 0.00 2.01
1406 1474 6.466009 TCCAAATACCACCCTAAACCTAAA 57.534 37.500 0.00 0.00 0.00 1.85
1407 1475 6.466009 TTCCAAATACCACCCTAAACCTAA 57.534 37.500 0.00 0.00 0.00 2.69
1408 1476 6.466009 TTTCCAAATACCACCCTAAACCTA 57.534 37.500 0.00 0.00 0.00 3.08
1409 1477 5.342361 TTTCCAAATACCACCCTAAACCT 57.658 39.130 0.00 0.00 0.00 3.50
1410 1478 6.614694 ATTTTCCAAATACCACCCTAAACC 57.385 37.500 0.00 0.00 0.00 3.27
1419 1487 6.378564 TCATTCGGCTAATTTTCCAAATACCA 59.621 34.615 0.00 0.00 0.00 3.25
1420 1488 6.801575 TCATTCGGCTAATTTTCCAAATACC 58.198 36.000 0.00 0.00 0.00 2.73
1423 1491 6.258507 GCAATCATTCGGCTAATTTTCCAAAT 59.741 34.615 0.00 0.00 0.00 2.32
1425 1493 5.108517 GCAATCATTCGGCTAATTTTCCAA 58.891 37.500 0.00 0.00 0.00 3.53
1427 1495 3.730715 CGCAATCATTCGGCTAATTTTCC 59.269 43.478 0.00 0.00 0.00 3.13
1432 1500 1.265095 CAGCGCAATCATTCGGCTAAT 59.735 47.619 11.47 0.00 31.72 1.73
1457 1525 3.437049 GGATAATAGCAAGTCCGGCAATC 59.563 47.826 0.00 0.00 0.00 2.67
1459 1527 2.846193 GGATAATAGCAAGTCCGGCAA 58.154 47.619 0.00 0.00 0.00 4.52
1460 1528 2.543777 GGATAATAGCAAGTCCGGCA 57.456 50.000 0.00 0.00 0.00 5.69
1464 1532 3.680458 GCTTAGCGGATAATAGCAAGTCC 59.320 47.826 0.00 0.00 35.48 3.85
1504 1581 5.531287 ACAAATCCTACCTCGAATTAATGGC 59.469 40.000 0.00 0.00 0.00 4.40
1510 1587 6.049955 TCAGAACAAATCCTACCTCGAATT 57.950 37.500 0.00 0.00 0.00 2.17
1526 1652 5.295431 CAAGTATTGCCGAAATCAGAACA 57.705 39.130 0.00 0.00 40.39 3.18
1603 1731 1.285578 GCGTTTTCAGCTTTGGCAAA 58.714 45.000 12.79 12.79 41.70 3.68
1713 1841 4.753610 CACGATATCAGATTGCTCAATGGT 59.246 41.667 3.12 0.00 0.00 3.55
1714 1842 4.753610 ACACGATATCAGATTGCTCAATGG 59.246 41.667 3.12 0.00 0.00 3.16
1717 1845 4.571984 CCAACACGATATCAGATTGCTCAA 59.428 41.667 3.12 0.00 0.00 3.02
1721 1849 2.031682 GCCCAACACGATATCAGATTGC 60.032 50.000 3.12 0.00 0.00 3.56
1722 1850 2.549754 GGCCCAACACGATATCAGATTG 59.450 50.000 3.12 3.54 0.00 2.67
1730 1858 3.255423 TTGGCGGCCCAACACGATA 62.255 57.895 17.97 0.00 46.01 2.92
1780 1908 6.183360 ACCACACTCATCAACTAAAGTAGTGT 60.183 38.462 8.97 8.97 45.00 3.55
1784 1912 4.994852 GCACCACACTCATCAACTAAAGTA 59.005 41.667 0.00 0.00 0.00 2.24
1861 1992 6.873076 TCAGGCAAAATAATCAAAACATGGAC 59.127 34.615 0.00 0.00 0.00 4.02
1875 2006 6.262944 ACTCATAAATCGCATCAGGCAAAATA 59.737 34.615 0.00 0.00 45.17 1.40
1880 2011 3.198409 ACTCATAAATCGCATCAGGCA 57.802 42.857 0.00 0.00 45.17 4.75
1894 2026 7.707624 AGCCATCATTCAAAAGAAACTCATA 57.292 32.000 0.00 0.00 0.00 2.15
1904 2036 8.547173 ACCCATAAATAAAGCCATCATTCAAAA 58.453 29.630 0.00 0.00 0.00 2.44
1907 2039 6.610830 ACACCCATAAATAAAGCCATCATTCA 59.389 34.615 0.00 0.00 0.00 2.57
1908 2040 7.054491 ACACCCATAAATAAAGCCATCATTC 57.946 36.000 0.00 0.00 0.00 2.67
1909 2041 7.436320 AACACCCATAAATAAAGCCATCATT 57.564 32.000 0.00 0.00 0.00 2.57
1910 2042 6.239008 CGAACACCCATAAATAAAGCCATCAT 60.239 38.462 0.00 0.00 0.00 2.45
1953 2086 3.549873 ACATAAACAAAACTGCACGCAAC 59.450 39.130 0.00 0.00 0.00 4.17
1958 2091 5.231991 CCACAGAACATAAACAAAACTGCAC 59.768 40.000 0.00 0.00 0.00 4.57
2042 2189 2.938428 TGTTTATGGCCCTTCCCATT 57.062 45.000 0.00 0.00 42.92 3.16
2097 2244 2.359107 ATGCACAGCCACCGTCAG 60.359 61.111 0.00 0.00 0.00 3.51
2166 2313 1.808945 CCACAATTCTCCTCTGTGCAC 59.191 52.381 10.75 10.75 39.30 4.57
2212 2359 5.755375 CCATGTGTCAGTAATATCAGTGGAC 59.245 44.000 0.00 0.00 0.00 4.02
2277 2424 7.989741 AGCAACTACTATATGCTCAGATGTTTT 59.010 33.333 0.00 0.00 46.98 2.43
2315 2477 6.314896 CAGCTTAGTTCATCTGAAAGTAAGGG 59.685 42.308 17.07 3.75 35.48 3.95
2335 2497 2.149578 GTCATCACAAGAGCACAGCTT 58.850 47.619 0.00 0.00 39.88 3.74
2412 2574 5.411053 CCAGCTCCTTCTTTGAAAGAGTTAG 59.589 44.000 7.76 7.69 39.03 2.34
2493 2660 7.917505 CACAGGGATGATTGCTTAATCTAAAAC 59.082 37.037 0.00 0.00 0.00 2.43
2664 2840 8.587608 TGCAGAAGAATAATCCAGTTTGAAATT 58.412 29.630 0.00 0.00 0.00 1.82
2668 2844 6.660521 ACATGCAGAAGAATAATCCAGTTTGA 59.339 34.615 0.00 0.00 0.00 2.69
2697 2873 7.390823 TGCACATACAAGAAACTCAACCTATA 58.609 34.615 0.00 0.00 0.00 1.31
2710 2886 7.157347 GGAGATTGATATCTGCACATACAAGA 58.843 38.462 3.98 0.00 45.59 3.02
2711 2887 7.361889 GGAGATTGATATCTGCACATACAAG 57.638 40.000 3.98 0.00 45.59 3.16
2764 2940 8.879342 ATACCTTCTTCATTCTCGTATTCAAG 57.121 34.615 0.00 0.00 0.00 3.02
2793 2969 3.479505 TGACAACAAAGTGAAACGTGG 57.520 42.857 0.00 0.00 45.86 4.94
2813 2989 9.950496 AAAGCATACAGAATCGGAGATAATAAT 57.050 29.630 0.00 0.00 45.12 1.28
2824 3000 8.607459 AGTGAAATAAGAAAGCATACAGAATCG 58.393 33.333 0.00 0.00 0.00 3.34
2825 3001 9.713740 CAGTGAAATAAGAAAGCATACAGAATC 57.286 33.333 0.00 0.00 0.00 2.52
2975 3151 7.040478 ACAGCTGCACATTTTTATACTCTGAAA 60.040 33.333 15.27 0.00 0.00 2.69
3013 3192 7.201821 CCATGTATCCATTCCCTGAAAAGTAAC 60.202 40.741 0.00 0.00 0.00 2.50
3050 3229 0.740737 GCTCATTTTCCCATCCACCG 59.259 55.000 0.00 0.00 0.00 4.94
3129 3308 1.734137 CTCTACCACGCGCATACCT 59.266 57.895 5.73 0.00 0.00 3.08
3177 3356 1.452108 GCTGACCACCATAGCCACC 60.452 63.158 0.00 0.00 0.00 4.61
3178 3357 4.225497 GCTGACCACCATAGCCAC 57.775 61.111 0.00 0.00 0.00 5.01
3181 3360 1.153086 CCAGGCTGACCACCATAGC 60.153 63.158 17.94 0.00 39.06 2.97
3182 3361 0.107508 CACCAGGCTGACCACCATAG 60.108 60.000 17.94 0.00 39.06 2.23
3183 3362 1.561769 CCACCAGGCTGACCACCATA 61.562 60.000 17.94 0.00 39.06 2.74
3184 3363 2.759114 CACCAGGCTGACCACCAT 59.241 61.111 17.94 0.00 39.06 3.55
3185 3364 3.569210 CCACCAGGCTGACCACCA 61.569 66.667 17.94 0.00 39.06 4.17
3195 3374 1.224592 GACCACCATAGCCACCAGG 59.775 63.158 0.00 0.00 38.23 4.45
3196 3375 0.107508 CTGACCACCATAGCCACCAG 60.108 60.000 0.00 0.00 0.00 4.00
3197 3376 1.990424 CTGACCACCATAGCCACCA 59.010 57.895 0.00 0.00 0.00 4.17
3365 3544 1.228675 AGCTGGTGCAGGAAAAGGG 60.229 57.895 0.00 0.00 42.74 3.95
3435 3614 5.048364 ACAGATGCAGCGGTTTATTAACAAA 60.048 36.000 0.67 0.00 35.92 2.83
3586 3768 2.029020 ACTAACAACAGCAGCGAGATGA 60.029 45.455 4.49 0.00 37.02 2.92
3589 3771 2.135139 CAACTAACAACAGCAGCGAGA 58.865 47.619 0.00 0.00 0.00 4.04
3598 3780 1.885887 GCAGGCATCCAACTAACAACA 59.114 47.619 0.00 0.00 0.00 3.33
3601 3783 1.340017 GGAGCAGGCATCCAACTAACA 60.340 52.381 0.00 0.00 36.79 2.41
3987 4171 8.944212 ACGTTTATAACACAAGCTATGTTTTC 57.056 30.769 18.46 7.16 41.46 2.29
4056 4240 6.547141 GCTGGAGATGCTCTATGAGACTATAT 59.453 42.308 0.00 0.00 0.00 0.86
4057 4241 5.885352 GCTGGAGATGCTCTATGAGACTATA 59.115 44.000 0.00 0.00 0.00 1.31
4180 4364 7.013369 GGCCCATAGTTCTTATTTACAGAAAGG 59.987 40.741 0.00 0.00 31.98 3.11
4195 4379 0.034089 ACAAGGCAGGCCCATAGTTC 60.034 55.000 6.70 0.00 36.58 3.01
4224 4438 8.097038 TCATGGCAGATTATTATACTGTCTTCC 58.903 37.037 0.00 0.00 37.20 3.46
4243 4457 2.888414 CCATAGCATTGTCATCATGGCA 59.112 45.455 0.00 0.00 0.00 4.92
4246 4460 9.616634 GTTAATAACCATAGCATTGTCATCATG 57.383 33.333 0.00 0.00 0.00 3.07
4268 4482 9.487790 CTTTTGGATTGCCTTTTTATCAGTTAA 57.512 29.630 0.00 0.00 34.31 2.01
4472 5860 2.528743 CCTTGCAGTATCAGCGCCG 61.529 63.158 2.29 0.00 33.85 6.46
4487 5875 5.072329 TCAAGAGGAAGACAAGAATCACCTT 59.928 40.000 0.00 0.00 31.05 3.50
4579 5967 1.377202 GCTCACCGAGGCCAATTCA 60.377 57.895 5.01 0.00 0.00 2.57
4580 5968 0.678048 AAGCTCACCGAGGCCAATTC 60.678 55.000 5.01 0.00 0.00 2.17
4615 6003 3.249189 ACCGCTGAGGCCAGGAAA 61.249 61.111 5.01 0.00 46.52 3.13
4621 6009 1.312371 TAAAATGCACCGCTGAGGCC 61.312 55.000 0.00 0.00 46.52 5.19
4627 6015 0.732571 CCGATGTAAAATGCACCGCT 59.267 50.000 0.00 0.00 0.00 5.52
4638 6026 0.834612 CAACCCCCTAGCCGATGTAA 59.165 55.000 0.00 0.00 0.00 2.41
4714 6103 1.005037 ATCAAAGCTCACCGCGTGA 60.005 52.632 4.92 8.28 45.59 4.35
4728 6117 2.184322 GCGAGGGCGAGACATCAA 59.816 61.111 0.00 0.00 40.82 2.57
4748 6160 1.335964 CCATTACGCCGTCGAGATCAT 60.336 52.381 0.00 0.00 39.41 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.