Multiple sequence alignment - TraesCS5B01G334300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G334300 chr5B 100.000 5216 0 0 1 5216 517774138 517779353 0.000000e+00 9633.0
1 TraesCS5B01G334300 chr5B 84.412 3599 522 23 756 4332 517797677 517801258 0.000000e+00 3502.0
2 TraesCS5B01G334300 chr5B 83.241 3622 532 51 772 4359 517694388 517697968 0.000000e+00 3256.0
3 TraesCS5B01G334300 chr5B 85.306 1014 127 13 3352 4350 517706538 517707544 0.000000e+00 1027.0
4 TraesCS5B01G334300 chr5D 95.799 4332 123 15 1 4319 428592243 428596528 0.000000e+00 6937.0
5 TraesCS5B01G334300 chr5D 85.417 3936 490 58 458 4350 428511889 428515783 0.000000e+00 4012.0
6 TraesCS5B01G334300 chr5D 85.433 3549 468 30 827 4355 428565582 428569101 0.000000e+00 3644.0
7 TraesCS5B01G334300 chr5D 84.389 3600 512 31 763 4336 428670623 428674198 0.000000e+00 3489.0
8 TraesCS5B01G334300 chr5A 97.972 2120 41 1 2168 4287 544246345 544248462 0.000000e+00 3675.0
9 TraesCS5B01G334300 chr5A 84.690 3488 495 24 759 4228 544452888 544456354 0.000000e+00 3446.0
10 TraesCS5B01G334300 chr5A 84.233 3482 488 44 798 4235 544502375 544505839 0.000000e+00 3332.0
11 TraesCS5B01G334300 chr5A 95.259 2025 77 9 160 2175 544243518 544245532 0.000000e+00 3190.0
12 TraesCS5B01G334300 chr5A 87.641 1772 215 3 2593 4361 544463367 544465137 0.000000e+00 2056.0
13 TraesCS5B01G334300 chr5A 82.873 1845 273 26 772 2597 544158548 544160368 0.000000e+00 1616.0
14 TraesCS5B01G334300 chr5A 81.530 1922 297 43 619 2511 544461476 544463368 0.000000e+00 1530.0
15 TraesCS5B01G334300 chr5A 84.884 172 12 8 1 169 544243235 544243395 1.500000e-35 161.0
16 TraesCS5B01G334300 chr5A 93.548 93 5 1 5077 5169 544251841 544251932 2.530000e-28 137.0
17 TraesCS5B01G334300 chr1A 80.952 84 16 0 3928 4011 27215236 27215319 3.370000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G334300 chr5B 517774138 517779353 5215 False 9633.00 9633 100.00000 1 5216 1 chr5B.!!$F3 5215
1 TraesCS5B01G334300 chr5B 517797677 517801258 3581 False 3502.00 3502 84.41200 756 4332 1 chr5B.!!$F4 3576
2 TraesCS5B01G334300 chr5B 517694388 517697968 3580 False 3256.00 3256 83.24100 772 4359 1 chr5B.!!$F1 3587
3 TraesCS5B01G334300 chr5B 517706538 517707544 1006 False 1027.00 1027 85.30600 3352 4350 1 chr5B.!!$F2 998
4 TraesCS5B01G334300 chr5D 428592243 428596528 4285 False 6937.00 6937 95.79900 1 4319 1 chr5D.!!$F3 4318
5 TraesCS5B01G334300 chr5D 428511889 428515783 3894 False 4012.00 4012 85.41700 458 4350 1 chr5D.!!$F1 3892
6 TraesCS5B01G334300 chr5D 428565582 428569101 3519 False 3644.00 3644 85.43300 827 4355 1 chr5D.!!$F2 3528
7 TraesCS5B01G334300 chr5D 428670623 428674198 3575 False 3489.00 3489 84.38900 763 4336 1 chr5D.!!$F4 3573
8 TraesCS5B01G334300 chr5A 544452888 544456354 3466 False 3446.00 3446 84.69000 759 4228 1 chr5A.!!$F2 3469
9 TraesCS5B01G334300 chr5A 544502375 544505839 3464 False 3332.00 3332 84.23300 798 4235 1 chr5A.!!$F3 3437
10 TraesCS5B01G334300 chr5A 544461476 544465137 3661 False 1793.00 2056 84.58550 619 4361 2 chr5A.!!$F5 3742
11 TraesCS5B01G334300 chr5A 544243235 544251932 8697 False 1790.75 3675 92.91575 1 5169 4 chr5A.!!$F4 5168
12 TraesCS5B01G334300 chr5A 544158548 544160368 1820 False 1616.00 1616 82.87300 772 2597 1 chr5A.!!$F1 1825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 89 0.038166 TGTTGGAGATGCCCCAAGTC 59.962 55.0 0.0 0.0 43.63 3.01 F
88 91 0.038166 TTGGAGATGCCCCAAGTCAC 59.962 55.0 0.0 0.0 38.64 3.67 F
496 641 0.318762 GACTCAGCCAAGGTCTTCGT 59.681 55.0 0.0 0.0 0.00 3.85 F
715 880 0.321671 GCTGCTAGACTTGTGGGACA 59.678 55.0 0.0 0.0 0.00 4.02 F
1147 1379 0.460311 ATTCCAGTCGCTCCCTTACG 59.540 55.0 0.0 0.0 0.00 3.18 F
2511 3649 0.607489 CTTCTGAGGTTGGGGTGCTG 60.607 60.0 0.0 0.0 0.00 4.41 F
3426 4576 0.674581 CAGGCGATGAAGAGGCACAA 60.675 55.0 0.0 0.0 35.18 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1269 1.004044 CTTCACCATGGTTCCTCTGCT 59.996 52.381 16.84 0.00 0.00 4.24 R
1563 1795 2.305927 CAGGGTTTGGATGTGTCCTAGT 59.694 50.000 0.00 0.00 45.32 2.57 R
2302 3357 2.135139 GGCGATCATGAGCGATGTTAA 58.865 47.619 35.26 0.00 43.75 2.01 R
2341 3396 5.068987 ACACACCAAATGCTTCAGTTATGTT 59.931 36.000 0.00 0.00 0.00 2.71 R
2985 4131 1.619654 CATTTGGGACAGTGCCTTCA 58.380 50.000 13.05 0.00 42.39 3.02 R
3788 4938 1.261238 GGTCCCTGCTAGTGCACTCT 61.261 60.000 25.56 2.54 45.31 3.24 R
4788 8738 0.038166 TTGATGAACCTGGACTGCCC 59.962 55.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.223144 AGCTGTTACTTTGAATGGGGTTT 58.777 39.130 0.00 0.00 0.00 3.27
28 29 4.039124 AGCTGTTACTTTGAATGGGGTTTG 59.961 41.667 0.00 0.00 0.00 2.93
29 30 4.306600 CTGTTACTTTGAATGGGGTTTGC 58.693 43.478 0.00 0.00 0.00 3.68
31 32 4.407296 TGTTACTTTGAATGGGGTTTGCTT 59.593 37.500 0.00 0.00 0.00 3.91
32 33 3.473923 ACTTTGAATGGGGTTTGCTTG 57.526 42.857 0.00 0.00 0.00 4.01
33 34 2.145536 CTTTGAATGGGGTTTGCTTGC 58.854 47.619 0.00 0.00 0.00 4.01
34 35 1.422531 TTGAATGGGGTTTGCTTGCT 58.577 45.000 0.00 0.00 0.00 3.91
35 36 0.968405 TGAATGGGGTTTGCTTGCTC 59.032 50.000 0.00 0.00 0.00 4.26
58 61 3.568853 CCCCTTAGTGACGGTCATAGTAG 59.431 52.174 14.78 9.29 0.00 2.57
59 62 4.205587 CCCTTAGTGACGGTCATAGTAGT 58.794 47.826 14.78 0.00 0.00 2.73
60 63 5.371526 CCCTTAGTGACGGTCATAGTAGTA 58.628 45.833 14.78 0.00 0.00 1.82
81 84 3.515602 ATAGATTGTTGGAGATGCCCC 57.484 47.619 0.00 0.00 34.97 5.80
85 88 0.482446 TTGTTGGAGATGCCCCAAGT 59.518 50.000 0.00 0.00 43.63 3.16
86 89 0.038166 TGTTGGAGATGCCCCAAGTC 59.962 55.000 0.00 0.00 43.63 3.01
88 91 0.038166 TTGGAGATGCCCCAAGTCAC 59.962 55.000 0.00 0.00 38.64 3.67
127 131 3.334691 CCGCAATCACTACCTCTGAAAA 58.665 45.455 0.00 0.00 0.00 2.29
130 134 4.259970 CGCAATCACTACCTCTGAAAATCG 60.260 45.833 0.00 0.00 0.00 3.34
170 306 5.531122 TCCTCTACCATATTCCAAACGAG 57.469 43.478 0.00 0.00 0.00 4.18
174 310 5.657474 TCTACCATATTCCAAACGAGTGTC 58.343 41.667 0.00 0.00 0.00 3.67
177 313 3.062099 CCATATTCCAAACGAGTGTCACG 59.938 47.826 0.00 0.00 0.00 4.35
182 318 1.535226 CCAAACGAGTGTCACGTCTGA 60.535 52.381 0.00 0.00 43.16 3.27
185 321 2.051879 ACGAGTGTCACGTCTGAATG 57.948 50.000 0.00 0.00 39.87 2.67
196 333 3.372206 CACGTCTGAATGTCATTTCCTCC 59.628 47.826 0.00 0.00 0.00 4.30
197 334 3.007940 ACGTCTGAATGTCATTTCCTCCA 59.992 43.478 0.00 0.00 0.00 3.86
213 350 5.643379 TCCTCCATTTGAACTGCATTAAC 57.357 39.130 0.00 0.00 0.00 2.01
249 386 2.120232 CGTAGCTAGCCGTTGAAGATG 58.880 52.381 12.13 0.00 0.00 2.90
250 387 2.479730 CGTAGCTAGCCGTTGAAGATGT 60.480 50.000 12.13 0.00 0.00 3.06
278 415 3.582714 TTGCACACACAAATGTCAACA 57.417 38.095 0.00 0.00 36.72 3.33
303 440 4.021456 TGTCCATGTCGAATACAGTCAACT 60.021 41.667 0.00 0.00 42.70 3.16
401 538 6.670077 ATTCTATTCTTCTTTTGAGCGGAC 57.330 37.500 0.00 0.00 0.00 4.79
403 540 5.171476 TCTATTCTTCTTTTGAGCGGACTG 58.829 41.667 0.00 0.00 0.00 3.51
405 542 3.469008 TCTTCTTTTGAGCGGACTGAA 57.531 42.857 0.00 0.00 0.00 3.02
406 543 3.804036 TCTTCTTTTGAGCGGACTGAAA 58.196 40.909 0.00 0.00 0.00 2.69
407 544 3.809832 TCTTCTTTTGAGCGGACTGAAAG 59.190 43.478 0.00 0.00 42.29 2.62
410 547 1.896220 TTTGAGCGGACTGAAAGCAT 58.104 45.000 0.00 0.00 37.60 3.79
411 548 1.159285 TTGAGCGGACTGAAAGCATG 58.841 50.000 0.00 0.00 37.60 4.06
418 563 2.352030 CGGACTGAAAGCATGCACAATT 60.352 45.455 21.98 9.08 37.60 2.32
451 596 4.346129 GAAAAGCTTAGACCGCATCAATG 58.654 43.478 0.00 0.00 0.00 2.82
496 641 0.318762 GACTCAGCCAAGGTCTTCGT 59.681 55.000 0.00 0.00 0.00 3.85
516 661 0.535780 TGCAGGTGAGAAGCAAGTGG 60.536 55.000 0.00 0.00 34.97 4.00
568 713 1.732117 TAAACCCCTGGAGAACCGAA 58.268 50.000 0.00 0.00 39.42 4.30
577 722 1.550524 TGGAGAACCGAACCAGATGAG 59.449 52.381 0.00 0.00 39.42 2.90
578 723 1.550976 GGAGAACCGAACCAGATGAGT 59.449 52.381 0.00 0.00 0.00 3.41
579 724 2.758979 GGAGAACCGAACCAGATGAGTA 59.241 50.000 0.00 0.00 0.00 2.59
580 725 3.181485 GGAGAACCGAACCAGATGAGTAG 60.181 52.174 0.00 0.00 0.00 2.57
581 726 2.761208 AGAACCGAACCAGATGAGTAGG 59.239 50.000 0.00 0.00 0.00 3.18
582 727 2.526888 ACCGAACCAGATGAGTAGGA 57.473 50.000 0.00 0.00 0.00 2.94
715 880 0.321671 GCTGCTAGACTTGTGGGACA 59.678 55.000 0.00 0.00 0.00 4.02
760 932 4.597075 TGGCCTATGCAGTCATATTCCTAA 59.403 41.667 3.32 0.00 40.13 2.69
813 988 0.527600 CAACGCTGCTACATCGCCTA 60.528 55.000 0.00 0.00 0.00 3.93
819 994 2.482142 GCTGCTACATCGCCTAGTTCTT 60.482 50.000 0.00 0.00 0.00 2.52
822 997 2.738643 GCTACATCGCCTAGTTCTTGCA 60.739 50.000 0.00 0.00 0.00 4.08
1099 1323 2.178580 GAATTTCCCTTGATGGTGCCA 58.821 47.619 0.00 0.00 0.00 4.92
1147 1379 0.460311 ATTCCAGTCGCTCCCTTACG 59.540 55.000 0.00 0.00 0.00 3.18
1164 1396 2.814280 ACGTTGTCAACCTCGATCTT 57.186 45.000 10.12 0.00 0.00 2.40
1227 1459 2.720915 GGCTCTCTTTCCATGCTTTCT 58.279 47.619 0.00 0.00 0.00 2.52
1424 1656 3.083349 CATCCCCTGGCACCTCGA 61.083 66.667 0.00 0.00 0.00 4.04
1563 1795 4.431378 TGTCAGGACCCATACCTAAAGAA 58.569 43.478 0.00 0.00 35.84 2.52
1668 1903 1.970640 ACAGTGCTCACATACCTGACA 59.029 47.619 2.63 0.00 0.00 3.58
2011 2246 2.315901 CGACCGAGTTTGGAAATTTGC 58.684 47.619 2.22 2.22 0.00 3.68
2302 3357 2.097825 GCTTGAGGGATTGCAGTTCAT 58.902 47.619 0.00 0.00 0.00 2.57
2329 3384 3.402110 TCGCTCATGATCGCCAATAATT 58.598 40.909 13.92 0.00 0.00 1.40
2472 3527 9.539825 TTGACAAGTATTAATTTTGCACACAAT 57.460 25.926 10.59 0.00 35.21 2.71
2511 3649 0.607489 CTTCTGAGGTTGGGGTGCTG 60.607 60.000 0.00 0.00 0.00 4.41
2985 4131 7.902920 ATTTGATGTTGCATATAACCTCCTT 57.097 32.000 0.00 0.00 0.00 3.36
3183 4332 8.046708 ACTATTTCAATAACAGCAGGTGTGATA 58.953 33.333 5.89 0.00 40.26 2.15
3358 4507 3.498397 GGGATCATACGGCAGTGTTTATG 59.502 47.826 0.00 0.00 0.00 1.90
3364 4513 2.226330 ACGGCAGTGTTTATGAAGCAA 58.774 42.857 0.00 0.00 0.00 3.91
3426 4576 0.674581 CAGGCGATGAAGAGGCACAA 60.675 55.000 0.00 0.00 35.18 3.33
3547 4697 4.082949 GGTTCCTTGTGTGCCAGTTTATAC 60.083 45.833 0.00 0.00 0.00 1.47
3788 4938 7.789273 TGTTAAAACCTGATTCGTCAAACTA 57.211 32.000 0.00 0.00 0.00 2.24
3922 5079 5.645497 ACTCTTGATTCTTATGTTCCTGTGC 59.355 40.000 0.00 0.00 0.00 4.57
4137 5300 0.247736 AAGTGAGACGGTGCATCTCC 59.752 55.000 12.20 5.19 41.72 3.71
4267 5441 9.036671 GTATCATCTTAGCCTTGTTTAGTTCTC 57.963 37.037 0.00 0.00 0.00 2.87
4355 8281 5.052693 TGGGCATCATAGAATATATGGGC 57.947 43.478 0.00 0.42 0.00 5.36
4361 8287 6.348498 CATCATAGAATATATGGGCCACGAA 58.652 40.000 9.28 0.00 0.00 3.85
4362 8288 5.730550 TCATAGAATATATGGGCCACGAAC 58.269 41.667 9.28 0.00 0.00 3.95
4363 8289 5.483937 TCATAGAATATATGGGCCACGAACT 59.516 40.000 9.28 6.69 0.00 3.01
4364 8290 4.273148 AGAATATATGGGCCACGAACTC 57.727 45.455 9.28 3.22 0.00 3.01
4365 8291 3.646162 AGAATATATGGGCCACGAACTCA 59.354 43.478 9.28 0.00 0.00 3.41
4366 8292 2.902705 TATATGGGCCACGAACTCAC 57.097 50.000 9.28 0.00 0.00 3.51
4367 8293 0.179084 ATATGGGCCACGAACTCACG 60.179 55.000 9.28 0.00 39.31 4.35
4368 8294 1.252215 TATGGGCCACGAACTCACGA 61.252 55.000 9.28 0.00 37.03 4.35
4369 8295 1.899437 ATGGGCCACGAACTCACGAT 61.899 55.000 9.28 0.00 37.03 3.73
4370 8296 1.252215 TGGGCCACGAACTCACGATA 61.252 55.000 0.00 0.00 37.03 2.92
4371 8297 0.527817 GGGCCACGAACTCACGATAG 60.528 60.000 4.39 0.00 46.19 2.08
4372 8298 0.454600 GGCCACGAACTCACGATAGA 59.545 55.000 0.00 0.00 41.38 1.98
4373 8299 1.534175 GGCCACGAACTCACGATAGAG 60.534 57.143 0.00 0.00 41.44 2.43
4388 8314 3.901290 CGATAGAGTCGTGATCTAAACGC 59.099 47.826 0.00 0.00 45.19 4.84
4389 8315 4.318903 CGATAGAGTCGTGATCTAAACGCT 60.319 45.833 0.00 2.27 45.19 5.07
4390 8316 3.408288 AGAGTCGTGATCTAAACGCTC 57.592 47.619 14.69 14.69 40.87 5.03
4391 8317 3.011119 AGAGTCGTGATCTAAACGCTCT 58.989 45.455 17.25 17.25 43.29 4.09
4392 8318 3.440872 AGAGTCGTGATCTAAACGCTCTT 59.559 43.478 17.25 8.45 44.43 2.85
4393 8319 4.634883 AGAGTCGTGATCTAAACGCTCTTA 59.365 41.667 17.25 0.00 44.43 2.10
4394 8320 4.660105 AGTCGTGATCTAAACGCTCTTAC 58.340 43.478 0.00 0.00 40.80 2.34
4395 8321 4.155462 AGTCGTGATCTAAACGCTCTTACA 59.845 41.667 0.00 0.00 40.80 2.41
4396 8322 4.855388 GTCGTGATCTAAACGCTCTTACAA 59.145 41.667 0.00 0.00 40.80 2.41
4397 8323 5.515626 GTCGTGATCTAAACGCTCTTACAAT 59.484 40.000 0.00 0.00 40.80 2.71
4398 8324 6.034683 GTCGTGATCTAAACGCTCTTACAATT 59.965 38.462 0.00 0.00 40.80 2.32
4399 8325 6.252869 TCGTGATCTAAACGCTCTTACAATTC 59.747 38.462 0.00 0.00 40.80 2.17
4400 8326 6.253727 CGTGATCTAAACGCTCTTACAATTCT 59.746 38.462 0.00 0.00 33.79 2.40
4401 8327 7.201444 CGTGATCTAAACGCTCTTACAATTCTT 60.201 37.037 0.00 0.00 33.79 2.52
4402 8328 8.443937 GTGATCTAAACGCTCTTACAATTCTTT 58.556 33.333 0.00 0.00 0.00 2.52
4403 8329 9.647797 TGATCTAAACGCTCTTACAATTCTTTA 57.352 29.630 0.00 0.00 0.00 1.85
4404 8330 9.903185 GATCTAAACGCTCTTACAATTCTTTAC 57.097 33.333 0.00 0.00 0.00 2.01
4405 8331 8.821147 TCTAAACGCTCTTACAATTCTTTACA 57.179 30.769 0.00 0.00 0.00 2.41
4406 8332 8.922676 TCTAAACGCTCTTACAATTCTTTACAG 58.077 33.333 0.00 0.00 0.00 2.74
4407 8333 7.724305 AAACGCTCTTACAATTCTTTACAGA 57.276 32.000 0.00 0.00 0.00 3.41
4408 8334 6.952935 ACGCTCTTACAATTCTTTACAGAG 57.047 37.500 0.00 0.00 0.00 3.35
4409 8335 6.688578 ACGCTCTTACAATTCTTTACAGAGA 58.311 36.000 0.00 0.00 0.00 3.10
4410 8336 6.809196 ACGCTCTTACAATTCTTTACAGAGAG 59.191 38.462 0.00 0.00 34.15 3.20
4411 8337 7.030165 CGCTCTTACAATTCTTTACAGAGAGA 58.970 38.462 0.00 0.00 30.76 3.10
4475 8401 9.246670 TCATGCTTATGATAATATTTTGGGAGG 57.753 33.333 0.00 0.00 0.00 4.30
4479 8405 7.148000 GCTTATGATAATATTTTGGGAGGAGGC 60.148 40.741 0.00 0.00 0.00 4.70
4480 8406 4.998051 TGATAATATTTTGGGAGGAGGCC 58.002 43.478 0.00 0.00 0.00 5.19
4495 8421 2.484889 GAGGCCCGAAGTGATGATAAC 58.515 52.381 0.00 0.00 0.00 1.89
4496 8422 2.103263 GAGGCCCGAAGTGATGATAACT 59.897 50.000 0.00 0.00 0.00 2.24
4499 8425 3.270877 GCCCGAAGTGATGATAACTGTT 58.729 45.455 0.00 0.00 0.00 3.16
4506 8432 9.476202 CCGAAGTGATGATAACTGTTTCATATA 57.524 33.333 14.04 7.52 32.84 0.86
4536 8462 6.524101 ACTCTCTGAACTTCTGTTATCTCC 57.476 41.667 0.00 0.00 36.39 3.71
4542 8468 5.592054 TGAACTTCTGTTATCTCCGCTATG 58.408 41.667 0.00 0.00 36.39 2.23
4546 8472 4.837896 TCTGTTATCTCCGCTATGTCTG 57.162 45.455 0.00 0.00 0.00 3.51
4547 8473 4.207955 TCTGTTATCTCCGCTATGTCTGT 58.792 43.478 0.00 0.00 0.00 3.41
4563 8489 1.977854 TCTGTGTACAATGCCCTGTCT 59.022 47.619 0.00 0.00 0.00 3.41
4575 8501 2.046023 CTGTCTGCGGGCATGGAA 60.046 61.111 0.00 0.00 0.00 3.53
4578 8504 4.032452 TCTGCGGGCATGGAAGCA 62.032 61.111 0.00 0.00 38.03 3.91
4580 8506 2.829914 TGCGGGCATGGAAGCATC 60.830 61.111 0.00 0.00 34.39 3.91
4615 8557 0.745845 GCTCCACCATCATGTCGCTT 60.746 55.000 0.00 0.00 0.00 4.68
4619 8561 2.086869 CCACCATCATGTCGCTTCTTT 58.913 47.619 0.00 0.00 0.00 2.52
4640 8582 1.918609 GCGTGACTGTCGATTAGGAAC 59.081 52.381 2.98 0.00 0.00 3.62
4649 8591 2.609459 GTCGATTAGGAACATGTGCTGG 59.391 50.000 3.21 0.00 0.00 4.85
4650 8592 2.499693 TCGATTAGGAACATGTGCTGGA 59.500 45.455 3.21 0.00 0.00 3.86
4651 8593 2.609459 CGATTAGGAACATGTGCTGGAC 59.391 50.000 3.21 0.00 0.00 4.02
4654 8596 0.108585 AGGAACATGTGCTGGACGTT 59.891 50.000 3.21 0.00 0.00 3.99
4655 8597 0.951558 GGAACATGTGCTGGACGTTT 59.048 50.000 3.21 0.00 0.00 3.60
4658 8600 1.896220 ACATGTGCTGGACGTTTGAT 58.104 45.000 0.00 0.00 0.00 2.57
4667 8609 3.182572 GCTGGACGTTTGATAGATAAGCG 59.817 47.826 0.00 0.00 37.68 4.68
4668 8610 3.120792 TGGACGTTTGATAGATAAGCGC 58.879 45.455 0.00 0.00 35.57 5.92
4687 8629 2.203153 ACGCGACAGGGTTTTGCT 60.203 55.556 15.93 0.00 40.95 3.91
4688 8630 2.252260 CGCGACAGGGTTTTGCTG 59.748 61.111 0.00 0.00 0.00 4.41
4692 8634 1.733526 GACAGGGTTTTGCTGCGTT 59.266 52.632 0.00 0.00 0.00 4.84
4693 8635 0.102300 GACAGGGTTTTGCTGCGTTT 59.898 50.000 0.00 0.00 0.00 3.60
4712 8654 3.962421 GCGCCATGCCTGATCTGC 61.962 66.667 0.00 0.00 37.76 4.26
4713 8655 3.646976 CGCCATGCCTGATCTGCG 61.647 66.667 0.00 0.00 35.81 5.18
4714 8656 2.203112 GCCATGCCTGATCTGCGA 60.203 61.111 0.00 0.00 0.00 5.10
4715 8657 2.541120 GCCATGCCTGATCTGCGAC 61.541 63.158 0.00 0.00 0.00 5.19
4716 8658 1.890979 CCATGCCTGATCTGCGACC 60.891 63.158 0.00 0.00 0.00 4.79
4717 8659 1.153309 CATGCCTGATCTGCGACCA 60.153 57.895 0.00 0.00 0.00 4.02
4718 8660 1.145598 ATGCCTGATCTGCGACCAG 59.854 57.895 0.00 0.00 40.54 4.00
4719 8661 1.620739 ATGCCTGATCTGCGACCAGT 61.621 55.000 0.00 0.00 40.09 4.00
4720 8662 1.520342 GCCTGATCTGCGACCAGTC 60.520 63.158 0.00 0.00 40.09 3.51
4721 8663 1.142748 CCTGATCTGCGACCAGTCC 59.857 63.158 0.00 0.00 40.09 3.85
4722 8664 1.226802 CTGATCTGCGACCAGTCCG 60.227 63.158 0.00 0.00 40.09 4.79
4723 8665 1.657751 CTGATCTGCGACCAGTCCGA 61.658 60.000 0.00 0.00 40.09 4.55
4724 8666 1.037579 TGATCTGCGACCAGTCCGAT 61.038 55.000 0.00 0.00 40.09 4.18
4732 8674 2.065906 GACCAGTCCGATCGAGGAGC 62.066 65.000 18.66 7.10 41.68 4.70
4753 8695 3.181440 GCCAATTGACCATATCCTCCTCA 60.181 47.826 7.12 0.00 0.00 3.86
4760 8710 1.270732 CCATATCCTCCTCAGCTGTGC 60.271 57.143 14.67 0.00 0.00 4.57
4804 8754 1.434513 TTGGGGCAGTCCAGGTTCAT 61.435 55.000 0.00 0.00 38.17 2.57
4808 8758 1.341383 GGGCAGTCCAGGTTCATCAAT 60.341 52.381 0.00 0.00 35.00 2.57
4834 8784 7.551035 TGGATTTGAAATTTTGTTGAACTGG 57.449 32.000 0.00 0.00 0.00 4.00
4835 8785 6.541641 TGGATTTGAAATTTTGTTGAACTGGG 59.458 34.615 0.00 0.00 0.00 4.45
4836 8786 5.809719 TTTGAAATTTTGTTGAACTGGGC 57.190 34.783 0.00 0.00 0.00 5.36
4837 8787 4.751767 TGAAATTTTGTTGAACTGGGCT 57.248 36.364 0.00 0.00 0.00 5.19
4838 8788 5.860941 TGAAATTTTGTTGAACTGGGCTA 57.139 34.783 0.00 0.00 0.00 3.93
4839 8789 6.227298 TGAAATTTTGTTGAACTGGGCTAA 57.773 33.333 0.00 0.00 0.00 3.09
4840 8790 6.045955 TGAAATTTTGTTGAACTGGGCTAAC 58.954 36.000 0.00 0.00 0.00 2.34
4841 8791 4.600692 ATTTTGTTGAACTGGGCTAACC 57.399 40.909 0.00 0.00 40.81 2.85
4843 8793 1.975660 TGTTGAACTGGGCTAACCAC 58.024 50.000 0.00 0.00 46.80 4.16
4844 8794 1.244816 GTTGAACTGGGCTAACCACC 58.755 55.000 0.00 0.00 46.80 4.61
4845 8795 0.847373 TTGAACTGGGCTAACCACCA 59.153 50.000 0.00 0.00 46.80 4.17
4846 8796 0.847373 TGAACTGGGCTAACCACCAA 59.153 50.000 0.00 0.00 46.80 3.67
4847 8797 1.427368 TGAACTGGGCTAACCACCAAT 59.573 47.619 0.00 0.00 46.80 3.16
4848 8798 2.645297 TGAACTGGGCTAACCACCAATA 59.355 45.455 0.00 0.00 46.80 1.90
4849 8799 2.801077 ACTGGGCTAACCACCAATAC 57.199 50.000 0.00 0.00 46.80 1.89
4850 8800 1.283905 ACTGGGCTAACCACCAATACC 59.716 52.381 0.00 0.00 46.80 2.73
4851 8801 1.564348 CTGGGCTAACCACCAATACCT 59.436 52.381 0.00 0.00 46.80 3.08
4852 8802 1.997040 TGGGCTAACCACCAATACCTT 59.003 47.619 0.00 0.00 46.80 3.50
4853 8803 2.380590 TGGGCTAACCACCAATACCTTT 59.619 45.455 0.00 0.00 46.80 3.11
4854 8804 3.021695 GGGCTAACCACCAATACCTTTC 58.978 50.000 0.00 0.00 39.85 2.62
4855 8805 3.021695 GGCTAACCACCAATACCTTTCC 58.978 50.000 0.00 0.00 35.26 3.13
4856 8806 3.308904 GGCTAACCACCAATACCTTTCCT 60.309 47.826 0.00 0.00 35.26 3.36
4857 8807 3.945921 GCTAACCACCAATACCTTTCCTC 59.054 47.826 0.00 0.00 0.00 3.71
4858 8808 4.324331 GCTAACCACCAATACCTTTCCTCT 60.324 45.833 0.00 0.00 0.00 3.69
4859 8809 3.721087 ACCACCAATACCTTTCCTCTG 57.279 47.619 0.00 0.00 0.00 3.35
4860 8810 3.256704 ACCACCAATACCTTTCCTCTGA 58.743 45.455 0.00 0.00 0.00 3.27
4861 8811 3.852578 ACCACCAATACCTTTCCTCTGAT 59.147 43.478 0.00 0.00 0.00 2.90
4868 8818 6.933521 CCAATACCTTTCCTCTGATAGACATG 59.066 42.308 0.00 0.00 0.00 3.21
4892 8842 6.156083 TGTCAGACCATCTTGTACCATATTCA 59.844 38.462 0.00 0.00 0.00 2.57
4893 8843 6.703607 GTCAGACCATCTTGTACCATATTCAG 59.296 42.308 0.00 0.00 0.00 3.02
4894 8844 5.468072 CAGACCATCTTGTACCATATTCAGC 59.532 44.000 0.00 0.00 0.00 4.26
4895 8845 5.130975 AGACCATCTTGTACCATATTCAGCA 59.869 40.000 0.00 0.00 0.00 4.41
4900 8851 2.821546 TGTACCATATTCAGCAGACGC 58.178 47.619 0.00 0.00 38.99 5.19
4903 8854 0.940126 CCATATTCAGCAGACGCCAC 59.060 55.000 0.00 0.00 39.83 5.01
4917 8868 5.346281 GCAGACGCCACTTGATAATAGATAC 59.654 44.000 0.00 0.00 0.00 2.24
4919 8870 4.235360 ACGCCACTTGATAATAGATACGC 58.765 43.478 0.00 0.00 0.00 4.42
4934 8885 5.615925 AGATACGCATTTCCCTCTACTTT 57.384 39.130 0.00 0.00 0.00 2.66
4935 8886 5.602628 AGATACGCATTTCCCTCTACTTTC 58.397 41.667 0.00 0.00 0.00 2.62
4936 8887 2.618053 ACGCATTTCCCTCTACTTTCG 58.382 47.619 0.00 0.00 0.00 3.46
4937 8888 2.232941 ACGCATTTCCCTCTACTTTCGA 59.767 45.455 0.00 0.00 0.00 3.71
4938 8889 3.259064 CGCATTTCCCTCTACTTTCGAA 58.741 45.455 0.00 0.00 0.00 3.71
4939 8890 3.682858 CGCATTTCCCTCTACTTTCGAAA 59.317 43.478 10.71 10.71 0.00 3.46
4947 8898 5.035443 CCCTCTACTTTCGAAATGTACTCG 58.965 45.833 11.70 0.08 37.66 4.18
4957 8908 3.181556 CGAAATGTACTCGTCGTGTTCAC 60.182 47.826 5.14 0.00 0.00 3.18
4972 8923 2.746412 TTCACCATCAGTGCCGTGGG 62.746 60.000 11.93 0.00 46.81 4.61
4989 8940 2.562298 GTGGGAGACATGGAAATTGCAA 59.438 45.455 0.00 0.00 0.00 4.08
4990 8941 2.562298 TGGGAGACATGGAAATTGCAAC 59.438 45.455 0.00 0.00 0.00 4.17
4991 8942 2.562298 GGGAGACATGGAAATTGCAACA 59.438 45.455 0.00 0.00 0.00 3.33
4992 8943 3.578688 GGAGACATGGAAATTGCAACAC 58.421 45.455 0.00 0.00 0.00 3.32
4993 8944 3.005684 GGAGACATGGAAATTGCAACACA 59.994 43.478 0.00 0.00 0.00 3.72
4994 8945 3.981211 AGACATGGAAATTGCAACACAC 58.019 40.909 0.00 0.00 0.00 3.82
4995 8946 3.384146 AGACATGGAAATTGCAACACACA 59.616 39.130 0.00 0.00 0.00 3.72
4996 8947 4.118410 GACATGGAAATTGCAACACACAA 58.882 39.130 0.00 0.00 0.00 3.33
4998 8949 4.332268 ACATGGAAATTGCAACACACAAAC 59.668 37.500 0.00 0.00 0.00 2.93
4999 8950 3.930336 TGGAAATTGCAACACACAAACA 58.070 36.364 0.00 0.00 0.00 2.83
5001 8952 4.569966 TGGAAATTGCAACACACAAACATC 59.430 37.500 0.00 0.00 0.00 3.06
5002 8953 4.569966 GGAAATTGCAACACACAAACATCA 59.430 37.500 0.00 0.00 0.00 3.07
5005 8956 3.865011 TGCAACACACAAACATCAACT 57.135 38.095 0.00 0.00 0.00 3.16
5006 8957 4.185467 TGCAACACACAAACATCAACTT 57.815 36.364 0.00 0.00 0.00 2.66
5007 8958 4.564041 TGCAACACACAAACATCAACTTT 58.436 34.783 0.00 0.00 0.00 2.66
5008 8959 4.388165 TGCAACACACAAACATCAACTTTG 59.612 37.500 0.00 0.00 35.17 2.77
5009 8960 4.388469 GCAACACACAAACATCAACTTTGT 59.612 37.500 0.00 0.00 41.52 2.83
5010 8961 5.444481 GCAACACACAAACATCAACTTTGTC 60.444 40.000 0.00 0.00 39.34 3.18
5012 8963 4.219507 ACACACAAACATCAACTTTGTCCA 59.780 37.500 0.00 0.00 39.34 4.02
5013 8964 5.105392 ACACACAAACATCAACTTTGTCCAT 60.105 36.000 0.00 0.00 39.34 3.41
5014 8965 5.232626 CACACAAACATCAACTTTGTCCATG 59.767 40.000 0.00 0.00 39.34 3.66
5015 8966 4.209703 CACAAACATCAACTTTGTCCATGC 59.790 41.667 0.00 0.00 39.34 4.06
5016 8967 4.099881 ACAAACATCAACTTTGTCCATGCT 59.900 37.500 0.00 0.00 37.27 3.79
5017 8968 3.928727 ACATCAACTTTGTCCATGCTG 57.071 42.857 0.00 0.00 0.00 4.41
5018 8969 3.489355 ACATCAACTTTGTCCATGCTGA 58.511 40.909 0.00 0.00 0.00 4.26
5019 8970 3.890756 ACATCAACTTTGTCCATGCTGAA 59.109 39.130 0.00 0.00 0.00 3.02
5020 8971 4.525487 ACATCAACTTTGTCCATGCTGAAT 59.475 37.500 0.00 0.00 0.00 2.57
5021 8972 5.711506 ACATCAACTTTGTCCATGCTGAATA 59.288 36.000 0.00 0.00 0.00 1.75
5022 8973 6.379133 ACATCAACTTTGTCCATGCTGAATAT 59.621 34.615 0.00 0.00 0.00 1.28
5023 8974 6.198650 TCAACTTTGTCCATGCTGAATATG 57.801 37.500 0.00 0.00 0.00 1.78
5024 8975 5.711506 TCAACTTTGTCCATGCTGAATATGT 59.288 36.000 0.00 0.00 0.00 2.29
5025 8976 6.883756 TCAACTTTGTCCATGCTGAATATGTA 59.116 34.615 0.00 0.00 0.00 2.29
5026 8977 6.683974 ACTTTGTCCATGCTGAATATGTAC 57.316 37.500 0.00 0.00 0.00 2.90
5027 8978 6.179756 ACTTTGTCCATGCTGAATATGTACA 58.820 36.000 0.00 0.00 0.00 2.90
5028 8979 6.830324 ACTTTGTCCATGCTGAATATGTACAT 59.170 34.615 13.93 13.93 26.94 2.29
5029 8980 6.622833 TTGTCCATGCTGAATATGTACATG 57.377 37.500 18.81 2.15 38.24 3.21
5030 8981 5.683681 TGTCCATGCTGAATATGTACATGT 58.316 37.500 18.81 9.13 37.10 3.21
5031 8982 6.825610 TGTCCATGCTGAATATGTACATGTA 58.174 36.000 18.81 0.08 37.10 2.29
5032 8983 6.705825 TGTCCATGCTGAATATGTACATGTAC 59.294 38.462 25.99 25.99 37.10 2.90
5048 8999 4.993905 CATGTACATACAGGTTCAGTCGA 58.006 43.478 8.32 0.00 39.92 4.20
5049 9000 5.407502 CATGTACATACAGGTTCAGTCGAA 58.592 41.667 8.32 0.00 39.92 3.71
5050 9001 5.456548 TGTACATACAGGTTCAGTCGAAA 57.543 39.130 0.00 0.00 31.43 3.46
5051 9002 5.845103 TGTACATACAGGTTCAGTCGAAAA 58.155 37.500 0.00 0.00 31.43 2.29
5052 9003 5.693104 TGTACATACAGGTTCAGTCGAAAAC 59.307 40.000 0.00 0.00 31.43 2.43
5053 9004 4.062991 ACATACAGGTTCAGTCGAAAACC 58.937 43.478 14.66 14.66 44.36 3.27
5054 9005 2.702592 ACAGGTTCAGTCGAAAACCA 57.297 45.000 21.19 0.00 46.05 3.67
5055 9006 2.993937 ACAGGTTCAGTCGAAAACCAA 58.006 42.857 21.19 0.00 46.05 3.67
5056 9007 3.349022 ACAGGTTCAGTCGAAAACCAAA 58.651 40.909 21.19 0.00 46.05 3.28
5057 9008 3.128068 ACAGGTTCAGTCGAAAACCAAAC 59.872 43.478 21.19 6.97 46.05 2.93
5058 9009 2.686405 AGGTTCAGTCGAAAACCAAACC 59.314 45.455 21.19 13.69 46.05 3.27
5059 9010 2.424246 GGTTCAGTCGAAAACCAAACCA 59.576 45.455 16.64 0.00 43.63 3.67
5060 9011 3.119424 GGTTCAGTCGAAAACCAAACCAA 60.119 43.478 16.64 0.00 43.63 3.67
5061 9012 4.487019 GTTCAGTCGAAAACCAAACCAAA 58.513 39.130 0.00 0.00 31.43 3.28
5062 9013 4.099380 TCAGTCGAAAACCAAACCAAAC 57.901 40.909 0.00 0.00 0.00 2.93
5063 9014 3.759618 TCAGTCGAAAACCAAACCAAACT 59.240 39.130 0.00 0.00 0.00 2.66
5064 9015 4.942483 TCAGTCGAAAACCAAACCAAACTA 59.058 37.500 0.00 0.00 0.00 2.24
5065 9016 5.415077 TCAGTCGAAAACCAAACCAAACTAA 59.585 36.000 0.00 0.00 0.00 2.24
5066 9017 6.072064 TCAGTCGAAAACCAAACCAAACTAAA 60.072 34.615 0.00 0.00 0.00 1.85
5067 9018 6.586844 CAGTCGAAAACCAAACCAAACTAAAA 59.413 34.615 0.00 0.00 0.00 1.52
5068 9019 7.276878 CAGTCGAAAACCAAACCAAACTAAAAT 59.723 33.333 0.00 0.00 0.00 1.82
5069 9020 7.490079 AGTCGAAAACCAAACCAAACTAAAATC 59.510 33.333 0.00 0.00 0.00 2.17
5070 9021 6.757478 TCGAAAACCAAACCAAACTAAAATCC 59.243 34.615 0.00 0.00 0.00 3.01
5071 9022 6.535508 CGAAAACCAAACCAAACTAAAATCCA 59.464 34.615 0.00 0.00 0.00 3.41
5072 9023 7.464844 CGAAAACCAAACCAAACTAAAATCCAC 60.465 37.037 0.00 0.00 0.00 4.02
5073 9024 4.939271 ACCAAACCAAACTAAAATCCACG 58.061 39.130 0.00 0.00 0.00 4.94
5074 9025 4.403113 ACCAAACCAAACTAAAATCCACGT 59.597 37.500 0.00 0.00 0.00 4.49
5075 9026 5.105269 ACCAAACCAAACTAAAATCCACGTT 60.105 36.000 0.00 0.00 0.00 3.99
5109 9060 1.865865 TTTGAACCGACTGAGAGCAC 58.134 50.000 0.00 0.00 0.00 4.40
5121 9072 1.071542 TGAGAGCACGATGGGAAAACA 59.928 47.619 0.00 0.00 0.00 2.83
5151 9102 8.358148 AGGAGATATGCATGCTTTTAATTCTTG 58.642 33.333 20.33 0.00 0.00 3.02
5153 9104 9.909644 GAGATATGCATGCTTTTAATTCTTGAT 57.090 29.630 20.33 1.28 0.00 2.57
5162 9113 6.158598 GCTTTTAATTCTTGATGCAAGGACA 58.841 36.000 7.27 0.00 41.33 4.02
5169 9120 6.409524 TTCTTGATGCAAGGACAAATTTCT 57.590 33.333 7.27 0.00 41.33 2.52
5170 9121 6.409524 TCTTGATGCAAGGACAAATTTCTT 57.590 33.333 7.27 0.00 41.33 2.52
5171 9122 6.218019 TCTTGATGCAAGGACAAATTTCTTG 58.782 36.000 11.78 11.78 41.33 3.02
5172 9123 5.534207 TGATGCAAGGACAAATTTCTTGT 57.466 34.783 15.57 1.21 39.80 3.16
5173 9124 5.291178 TGATGCAAGGACAAATTTCTTGTG 58.709 37.500 15.57 0.00 39.80 3.33
5174 9125 4.057406 TGCAAGGACAAATTTCTTGTGG 57.943 40.909 15.57 0.00 39.80 4.17
5175 9126 3.703556 TGCAAGGACAAATTTCTTGTGGA 59.296 39.130 15.57 0.00 39.80 4.02
5176 9127 4.161189 TGCAAGGACAAATTTCTTGTGGAA 59.839 37.500 15.57 2.50 39.80 3.53
5177 9128 4.746611 GCAAGGACAAATTTCTTGTGGAAG 59.253 41.667 15.57 0.00 39.80 3.46
5178 9129 5.451798 GCAAGGACAAATTTCTTGTGGAAGA 60.452 40.000 15.57 0.00 39.80 2.87
5179 9130 6.739565 GCAAGGACAAATTTCTTGTGGAAGAT 60.740 38.462 15.57 0.00 38.05 2.40
5180 9131 7.523709 GCAAGGACAAATTTCTTGTGGAAGATA 60.524 37.037 15.57 0.00 38.05 1.98
5181 9132 8.526147 CAAGGACAAATTTCTTGTGGAAGATAT 58.474 33.333 9.04 0.00 38.05 1.63
5182 9133 8.655935 AGGACAAATTTCTTGTGGAAGATATT 57.344 30.769 0.00 0.00 39.91 1.28
5183 9134 9.093458 AGGACAAATTTCTTGTGGAAGATATTT 57.907 29.630 0.00 0.00 44.27 1.40
5184 9135 9.710900 GGACAAATTTCTTGTGGAAGATATTTT 57.289 29.630 9.25 4.26 42.48 1.82
5186 9137 9.492973 ACAAATTTCTTGTGGAAGATATTTTGG 57.507 29.630 9.25 4.63 42.48 3.28
5187 9138 9.709495 CAAATTTCTTGTGGAAGATATTTTGGA 57.291 29.630 9.25 0.00 42.48 3.53
5188 9139 9.710900 AAATTTCTTGTGGAAGATATTTTGGAC 57.289 29.630 0.00 0.00 42.48 4.02
5189 9140 6.494893 TTCTTGTGGAAGATATTTTGGACG 57.505 37.500 0.00 0.00 38.05 4.79
5190 9141 4.941263 TCTTGTGGAAGATATTTTGGACGG 59.059 41.667 0.00 0.00 32.98 4.79
5191 9142 4.561500 TGTGGAAGATATTTTGGACGGA 57.438 40.909 0.00 0.00 0.00 4.69
5192 9143 4.258543 TGTGGAAGATATTTTGGACGGAC 58.741 43.478 0.00 0.00 0.00 4.79
5193 9144 4.258543 GTGGAAGATATTTTGGACGGACA 58.741 43.478 0.00 0.00 0.00 4.02
5194 9145 4.698304 GTGGAAGATATTTTGGACGGACAA 59.302 41.667 0.00 0.00 0.00 3.18
5195 9146 4.698304 TGGAAGATATTTTGGACGGACAAC 59.302 41.667 0.00 0.00 0.00 3.32
5196 9147 4.941873 GGAAGATATTTTGGACGGACAACT 59.058 41.667 0.00 0.00 0.00 3.16
5197 9148 5.414765 GGAAGATATTTTGGACGGACAACTT 59.585 40.000 0.00 0.00 0.00 2.66
5198 9149 6.403309 GGAAGATATTTTGGACGGACAACTTC 60.403 42.308 0.00 0.00 32.31 3.01
5199 9150 4.941873 AGATATTTTGGACGGACAACTTCC 59.058 41.667 0.00 0.00 41.75 3.46
5200 9151 2.421751 TTTTGGACGGACAACTTCCA 57.578 45.000 0.00 0.00 46.29 3.53
5201 9152 1.670791 TTTGGACGGACAACTTCCAC 58.329 50.000 0.00 0.00 46.29 4.02
5202 9153 0.542333 TTGGACGGACAACTTCCACA 59.458 50.000 0.00 0.00 46.29 4.17
5203 9154 0.542333 TGGACGGACAACTTCCACAA 59.458 50.000 0.00 0.00 46.29 3.33
5204 9155 0.942252 GGACGGACAACTTCCACAAC 59.058 55.000 0.00 0.00 46.29 3.32
5205 9156 0.942252 GACGGACAACTTCCACAACC 59.058 55.000 0.00 0.00 46.29 3.77
5206 9157 0.812412 ACGGACAACTTCCACAACCG 60.812 55.000 0.00 0.00 46.29 4.44
5207 9158 1.652563 GGACAACTTCCACAACCGC 59.347 57.895 0.00 0.00 45.10 5.68
5208 9159 1.098712 GGACAACTTCCACAACCGCA 61.099 55.000 0.00 0.00 45.10 5.69
5209 9160 0.307760 GACAACTTCCACAACCGCAG 59.692 55.000 0.00 0.00 0.00 5.18
5210 9161 1.008538 CAACTTCCACAACCGCAGC 60.009 57.895 0.00 0.00 0.00 5.25
5211 9162 2.193536 AACTTCCACAACCGCAGCC 61.194 57.895 0.00 0.00 0.00 4.85
5212 9163 3.365265 CTTCCACAACCGCAGCCC 61.365 66.667 0.00 0.00 0.00 5.19
5213 9164 4.966787 TTCCACAACCGCAGCCCC 62.967 66.667 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.193479 CCCCATTCAAAGTAACAGCTTCC 59.807 47.826 0.00 0.00 0.00 3.46
16 17 0.968405 GAGCAAGCAAACCCCATTCA 59.032 50.000 0.00 0.00 0.00 2.57
27 28 0.840288 TCACTAAGGGGGAGCAAGCA 60.840 55.000 0.00 0.00 0.00 3.91
28 29 0.393132 GTCACTAAGGGGGAGCAAGC 60.393 60.000 0.00 0.00 0.00 4.01
29 30 0.108138 CGTCACTAAGGGGGAGCAAG 60.108 60.000 0.00 0.00 0.00 4.01
31 32 1.987855 CCGTCACTAAGGGGGAGCA 60.988 63.158 0.00 0.00 0.00 4.26
32 33 1.957765 GACCGTCACTAAGGGGGAGC 61.958 65.000 0.00 0.00 37.22 4.70
33 34 0.613853 TGACCGTCACTAAGGGGGAG 60.614 60.000 0.00 0.00 37.22 4.30
34 35 0.042131 ATGACCGTCACTAAGGGGGA 59.958 55.000 2.57 0.00 37.22 4.81
35 36 1.687123 CTATGACCGTCACTAAGGGGG 59.313 57.143 2.57 0.00 37.22 5.40
58 61 4.762251 GGGGCATCTCCAACAATCTATTAC 59.238 45.833 0.00 0.00 36.21 1.89
59 62 4.415179 TGGGGCATCTCCAACAATCTATTA 59.585 41.667 0.00 0.00 36.21 0.98
60 63 3.205056 TGGGGCATCTCCAACAATCTATT 59.795 43.478 0.00 0.00 36.21 1.73
81 84 2.551459 CTCCTTTTCAGCCTGTGACTTG 59.449 50.000 0.00 0.00 33.71 3.16
85 88 1.349026 CTCCTCCTTTTCAGCCTGTGA 59.651 52.381 0.00 0.00 0.00 3.58
86 89 1.818642 CTCCTCCTTTTCAGCCTGTG 58.181 55.000 0.00 0.00 0.00 3.66
88 91 0.679321 GGCTCCTCCTTTTCAGCCTG 60.679 60.000 1.40 0.00 46.88 4.85
127 131 4.499183 GATGGTCTGAACTCTGAAACGAT 58.501 43.478 0.00 0.00 0.00 3.73
130 134 4.020662 AGAGGATGGTCTGAACTCTGAAAC 60.021 45.833 0.00 0.00 37.16 2.78
136 140 3.366396 TGGTAGAGGATGGTCTGAACTC 58.634 50.000 0.00 0.00 0.00 3.01
137 141 3.474798 TGGTAGAGGATGGTCTGAACT 57.525 47.619 0.00 0.00 0.00 3.01
138 142 6.426646 AATATGGTAGAGGATGGTCTGAAC 57.573 41.667 0.00 0.00 0.00 3.18
139 143 5.544176 GGAATATGGTAGAGGATGGTCTGAA 59.456 44.000 0.00 0.00 0.00 3.02
140 144 5.087323 GGAATATGGTAGAGGATGGTCTGA 58.913 45.833 0.00 0.00 0.00 3.27
141 145 4.840680 TGGAATATGGTAGAGGATGGTCTG 59.159 45.833 0.00 0.00 0.00 3.51
142 146 5.093236 TGGAATATGGTAGAGGATGGTCT 57.907 43.478 0.00 0.00 0.00 3.85
170 306 4.377431 GGAAATGACATTCAGACGTGACAC 60.377 45.833 0.05 0.00 30.10 3.67
174 310 3.372206 GGAGGAAATGACATTCAGACGTG 59.628 47.826 0.05 0.00 0.00 4.49
177 313 6.151648 TCAAATGGAGGAAATGACATTCAGAC 59.848 38.462 0.05 0.00 32.80 3.51
182 318 6.694447 CAGTTCAAATGGAGGAAATGACATT 58.306 36.000 0.00 0.00 40.45 2.71
185 321 4.022068 TGCAGTTCAAATGGAGGAAATGAC 60.022 41.667 6.07 0.00 40.45 3.06
213 350 1.596260 CTACGCTGATGGTGAATGCAG 59.404 52.381 0.00 0.00 0.00 4.41
271 408 1.410882 TCGACATGGACAGTGTTGACA 59.589 47.619 0.00 0.00 35.58 3.58
303 440 7.446931 TCAACAGGAAGTGAACTTAATTGCATA 59.553 33.333 0.00 0.00 36.11 3.14
401 538 5.886992 TCAGATAATTGTGCATGCTTTCAG 58.113 37.500 20.33 0.17 0.00 3.02
403 540 6.035327 GGTTTCAGATAATTGTGCATGCTTTC 59.965 38.462 20.33 9.94 0.00 2.62
405 542 5.413499 GGTTTCAGATAATTGTGCATGCTT 58.587 37.500 20.33 7.21 0.00 3.91
406 543 4.439153 CGGTTTCAGATAATTGTGCATGCT 60.439 41.667 20.33 0.00 0.00 3.79
407 544 3.792956 CGGTTTCAGATAATTGTGCATGC 59.207 43.478 11.82 11.82 0.00 4.06
410 547 5.697473 TTTCGGTTTCAGATAATTGTGCA 57.303 34.783 0.00 0.00 0.00 4.57
411 548 5.060940 GCTTTTCGGTTTCAGATAATTGTGC 59.939 40.000 0.00 0.00 0.00 4.57
418 563 5.873164 GGTCTAAGCTTTTCGGTTTCAGATA 59.127 40.000 3.20 0.00 34.65 1.98
496 641 1.311859 CACTTGCTTCTCACCTGCAA 58.688 50.000 0.00 0.00 43.25 4.08
516 661 1.196012 AGCAGCCTAACACTCCTACC 58.804 55.000 0.00 0.00 0.00 3.18
568 713 2.585900 TGGGTACTCCTACTCATCTGGT 59.414 50.000 0.00 0.00 36.20 4.00
582 727 1.140252 GTGGTGTGTGAGTTGGGTACT 59.860 52.381 0.00 0.00 40.71 2.73
715 880 6.294176 GCCAAGTGATCATGTAAACTGAAGTT 60.294 38.462 0.00 0.00 40.50 2.66
760 932 1.335051 CGCCATGATCTCACGACGTAT 60.335 52.381 0.00 0.00 0.00 3.06
813 988 1.353694 AGGAGGAGCAATGCAAGAACT 59.646 47.619 8.35 0.00 0.00 3.01
819 994 1.378119 CAGCAGGAGGAGCAATGCA 60.378 57.895 8.35 0.00 41.14 3.96
822 997 1.077644 CAGCAGCAGGAGGAGCAAT 60.078 57.895 0.00 0.00 0.00 3.56
1048 1269 1.004044 CTTCACCATGGTTCCTCTGCT 59.996 52.381 16.84 0.00 0.00 4.24
1099 1323 2.749044 CAGTCGCCCTGCAATGCT 60.749 61.111 6.82 0.00 33.59 3.79
1147 1379 2.599082 CGCTAAGATCGAGGTTGACAAC 59.401 50.000 9.97 9.97 0.00 3.32
1164 1396 2.950309 GGAGAGATGGTAGTTGTCGCTA 59.050 50.000 0.00 0.00 0.00 4.26
1227 1459 3.254093 TCACCAGAGAAGTTGAGGGTA 57.746 47.619 0.00 0.00 0.00 3.69
1424 1656 4.282957 TCTCTCTCATGTTCTGAAGCTGTT 59.717 41.667 0.00 0.00 32.14 3.16
1563 1795 2.305927 CAGGGTTTGGATGTGTCCTAGT 59.694 50.000 0.00 0.00 45.32 2.57
1668 1903 4.380531 CAGTGTATTGGTTCCGATATGCT 58.619 43.478 2.55 2.25 0.00 3.79
2302 3357 2.135139 GGCGATCATGAGCGATGTTAA 58.865 47.619 35.26 0.00 43.75 2.01
2329 3384 8.271458 TGCTTCAGTTATGTTTCCCTCAATATA 58.729 33.333 0.00 0.00 0.00 0.86
2341 3396 5.068987 ACACACCAAATGCTTCAGTTATGTT 59.931 36.000 0.00 0.00 0.00 2.71
2511 3649 8.871686 TCAGTTTAAGCTTTCCAAGATTTTTC 57.128 30.769 3.20 0.00 38.27 2.29
2985 4131 1.619654 CATTTGGGACAGTGCCTTCA 58.380 50.000 13.05 0.00 42.39 3.02
3141 4287 8.542497 TTGAAATAGTAGCGACAAACATAGTT 57.458 30.769 0.00 0.00 0.00 2.24
3183 4332 1.473258 TGCGGCAAATCATAAAGGCT 58.527 45.000 0.00 0.00 0.00 4.58
3364 4513 5.220854 CGACCACTTGTTCATCTTGAAGTTT 60.221 40.000 0.00 0.00 37.00 2.66
3426 4576 3.634397 TGCCGGAATCTTTCTTCATCT 57.366 42.857 5.05 0.00 0.00 2.90
3547 4697 5.104982 AGGTTGAAGCTAGATTTCCTCTCTG 60.105 44.000 0.00 0.00 35.28 3.35
3788 4938 1.261238 GGTCCCTGCTAGTGCACTCT 61.261 60.000 25.56 2.54 45.31 3.24
3825 4975 7.202016 AGTATTGCATGGAATAAACATACCG 57.798 36.000 19.77 0.00 0.00 4.02
3922 5079 3.624861 GTGTAGGAACATTCTGCATCCAG 59.375 47.826 4.66 0.00 38.08 3.86
4308 8174 7.745620 ACAGAAATAGCCTTATTTATTCGGG 57.254 36.000 0.00 0.00 39.10 5.14
4355 8281 2.537128 CGACTCTATCGTGAGTTCGTGG 60.537 54.545 9.10 0.00 46.11 4.94
4366 8292 8.194011 AGAGCGTTTAGATCACGACTCTATCG 62.194 46.154 19.51 0.00 43.24 2.92
4367 8293 5.049954 AGAGCGTTTAGATCACGACTCTATC 60.050 44.000 19.51 5.92 43.24 2.08
4368 8294 4.817464 AGAGCGTTTAGATCACGACTCTAT 59.183 41.667 19.51 3.01 43.24 1.98
4369 8295 4.190001 AGAGCGTTTAGATCACGACTCTA 58.810 43.478 19.51 0.00 43.24 2.43
4370 8296 3.011119 AGAGCGTTTAGATCACGACTCT 58.989 45.455 17.25 17.25 41.78 3.24
4371 8297 3.408288 AGAGCGTTTAGATCACGACTC 57.592 47.619 8.14 12.16 40.20 3.36
4372 8298 3.851976 AAGAGCGTTTAGATCACGACT 57.148 42.857 8.14 4.88 40.20 4.18
4373 8299 4.409570 TGTAAGAGCGTTTAGATCACGAC 58.590 43.478 8.14 2.00 40.20 4.34
4374 8300 4.690184 TGTAAGAGCGTTTAGATCACGA 57.310 40.909 8.14 0.00 40.20 4.35
4375 8301 5.950965 ATTGTAAGAGCGTTTAGATCACG 57.049 39.130 0.00 0.00 37.82 4.35
4376 8302 7.527084 AGAATTGTAAGAGCGTTTAGATCAC 57.473 36.000 0.00 0.00 37.82 3.06
4377 8303 8.547967 AAAGAATTGTAAGAGCGTTTAGATCA 57.452 30.769 0.00 0.00 37.82 2.92
4378 8304 9.903185 GTAAAGAATTGTAAGAGCGTTTAGATC 57.097 33.333 0.00 0.00 35.01 2.75
4379 8305 9.431887 TGTAAAGAATTGTAAGAGCGTTTAGAT 57.568 29.630 0.00 0.00 0.00 1.98
4380 8306 8.821147 TGTAAAGAATTGTAAGAGCGTTTAGA 57.179 30.769 0.00 0.00 0.00 2.10
4381 8307 8.922676 TCTGTAAAGAATTGTAAGAGCGTTTAG 58.077 33.333 0.00 0.00 0.00 1.85
4382 8308 8.821147 TCTGTAAAGAATTGTAAGAGCGTTTA 57.179 30.769 0.00 0.00 0.00 2.01
4383 8309 7.656137 TCTCTGTAAAGAATTGTAAGAGCGTTT 59.344 33.333 0.00 0.00 0.00 3.60
4384 8310 7.152645 TCTCTGTAAAGAATTGTAAGAGCGTT 58.847 34.615 0.00 0.00 0.00 4.84
4385 8311 6.688578 TCTCTGTAAAGAATTGTAAGAGCGT 58.311 36.000 0.00 0.00 0.00 5.07
4386 8312 7.030165 TCTCTCTGTAAAGAATTGTAAGAGCG 58.970 38.462 0.00 0.00 0.00 5.03
4387 8313 8.032451 ACTCTCTCTGTAAAGAATTGTAAGAGC 58.968 37.037 0.00 0.00 0.00 4.09
4452 8378 7.890127 CCTCCTCCCAAAATATTATCATAAGCA 59.110 37.037 0.00 0.00 0.00 3.91
4454 8380 7.340487 GGCCTCCTCCCAAAATATTATCATAAG 59.660 40.741 0.00 0.00 0.00 1.73
4470 8396 3.787001 CACTTCGGGCCTCCTCCC 61.787 72.222 0.84 0.00 43.02 4.30
4471 8397 2.066999 ATCACTTCGGGCCTCCTCC 61.067 63.158 0.84 0.00 0.00 4.30
4475 8401 2.103263 AGTTATCATCACTTCGGGCCTC 59.897 50.000 0.84 0.00 0.00 4.70
4479 8405 4.935205 TGAAACAGTTATCATCACTTCGGG 59.065 41.667 0.00 0.00 0.00 5.14
4480 8406 6.668541 ATGAAACAGTTATCATCACTTCGG 57.331 37.500 5.58 0.00 30.62 4.30
4506 8432 6.909550 ACAGAAGTTCAGAGAGTAGAACAT 57.090 37.500 5.50 0.00 44.94 2.71
4512 8438 6.316640 CGGAGATAACAGAAGTTCAGAGAGTA 59.683 42.308 5.50 0.00 39.15 2.59
4515 8441 4.142359 GCGGAGATAACAGAAGTTCAGAGA 60.142 45.833 5.50 0.00 39.15 3.10
4536 8462 2.285220 GGCATTGTACACAGACATAGCG 59.715 50.000 0.00 0.00 32.97 4.26
4542 8468 2.076863 GACAGGGCATTGTACACAGAC 58.923 52.381 0.00 0.00 0.00 3.51
4546 8472 0.804989 GCAGACAGGGCATTGTACAC 59.195 55.000 0.00 0.00 0.00 2.90
4547 8473 0.673333 CGCAGACAGGGCATTGTACA 60.673 55.000 0.00 0.00 0.00 2.90
4563 8489 2.829914 GATGCTTCCATGCCCGCA 60.830 61.111 3.98 3.98 36.75 5.69
4615 8557 2.148916 AATCGACAGTCACGCAAAGA 57.851 45.000 0.41 0.00 0.00 2.52
4619 8561 1.170442 TCCTAATCGACAGTCACGCA 58.830 50.000 0.41 0.00 0.00 5.24
4625 8567 3.055819 AGCACATGTTCCTAATCGACAGT 60.056 43.478 0.00 0.00 0.00 3.55
4640 8582 3.261580 TCTATCAAACGTCCAGCACATG 58.738 45.455 0.00 0.00 0.00 3.21
4649 8591 3.040795 TCGCGCTTATCTATCAAACGTC 58.959 45.455 5.56 0.00 0.00 4.34
4650 8592 2.787680 GTCGCGCTTATCTATCAAACGT 59.212 45.455 5.56 0.00 0.00 3.99
4651 8593 2.160272 CGTCGCGCTTATCTATCAAACG 60.160 50.000 5.56 0.00 0.00 3.60
4667 8609 3.343421 AAAACCCTGTCGCGTCGC 61.343 61.111 7.29 7.29 0.00 5.19
4668 8610 2.549282 CAAAACCCTGTCGCGTCG 59.451 61.111 5.77 0.00 0.00 5.12
4673 8615 2.058829 AACGCAGCAAAACCCTGTCG 62.059 55.000 0.00 0.00 36.57 4.35
4674 8616 0.102300 AAACGCAGCAAAACCCTGTC 59.898 50.000 0.00 0.00 32.93 3.51
4675 8617 0.179113 CAAACGCAGCAAAACCCTGT 60.179 50.000 0.00 0.00 32.93 4.00
4676 8618 0.875474 CCAAACGCAGCAAAACCCTG 60.875 55.000 0.00 0.00 0.00 4.45
4677 8619 1.441311 CCAAACGCAGCAAAACCCT 59.559 52.632 0.00 0.00 0.00 4.34
4678 8620 2.243957 GCCAAACGCAGCAAAACCC 61.244 57.895 0.00 0.00 37.47 4.11
4706 8648 0.318275 GATCGGACTGGTCGCAGATC 60.318 60.000 12.65 12.65 40.67 2.75
4707 8649 1.736586 GATCGGACTGGTCGCAGAT 59.263 57.895 0.00 5.27 40.67 2.90
4708 8650 2.761195 CGATCGGACTGGTCGCAGA 61.761 63.158 7.38 0.00 0.00 4.26
4709 8651 2.278206 CGATCGGACTGGTCGCAG 60.278 66.667 7.38 0.00 0.00 5.18
4710 8652 2.748647 TCGATCGGACTGGTCGCA 60.749 61.111 16.41 0.00 35.48 5.10
4711 8653 2.024871 CTCGATCGGACTGGTCGC 59.975 66.667 16.41 0.00 35.48 5.19
4712 8654 1.777030 CTCCTCGATCGGACTGGTCG 61.777 65.000 16.41 10.83 36.75 4.79
4713 8655 2.026522 CTCCTCGATCGGACTGGTC 58.973 63.158 16.41 0.00 0.00 4.02
4714 8656 2.122167 GCTCCTCGATCGGACTGGT 61.122 63.158 16.41 0.00 0.00 4.00
4715 8657 2.725008 GCTCCTCGATCGGACTGG 59.275 66.667 16.41 12.39 0.00 4.00
4716 8658 1.667154 TTGGCTCCTCGATCGGACTG 61.667 60.000 16.41 5.09 0.00 3.51
4717 8659 0.757188 ATTGGCTCCTCGATCGGACT 60.757 55.000 16.41 0.00 0.00 3.85
4718 8660 0.105039 AATTGGCTCCTCGATCGGAC 59.895 55.000 16.41 1.01 0.00 4.79
4719 8661 0.104855 CAATTGGCTCCTCGATCGGA 59.895 55.000 16.41 4.49 0.00 4.55
4720 8662 0.104855 TCAATTGGCTCCTCGATCGG 59.895 55.000 16.41 5.93 0.00 4.18
4721 8663 1.212616 GTCAATTGGCTCCTCGATCG 58.787 55.000 9.36 9.36 0.00 3.69
4722 8664 1.134401 TGGTCAATTGGCTCCTCGATC 60.134 52.381 10.38 0.00 0.00 3.69
4723 8665 0.911769 TGGTCAATTGGCTCCTCGAT 59.088 50.000 10.38 0.00 0.00 3.59
4724 8666 0.911769 ATGGTCAATTGGCTCCTCGA 59.088 50.000 10.38 0.00 0.00 4.04
4732 8674 4.649692 CTGAGGAGGATATGGTCAATTGG 58.350 47.826 5.42 0.00 0.00 3.16
4753 8695 1.742880 CACACGCATAGGCACAGCT 60.743 57.895 0.00 0.00 41.24 4.24
4778 8728 2.747855 GACTGCCCCAAAGAGCGG 60.748 66.667 0.00 0.00 41.32 5.52
4788 8738 0.038166 TTGATGAACCTGGACTGCCC 59.962 55.000 0.00 0.00 0.00 5.36
4808 8758 8.457261 CCAGTTCAACAAAATTTCAAATCCAAA 58.543 29.630 0.00 0.00 0.00 3.28
4824 8774 1.477923 GGTGGTTAGCCCAGTTCAACA 60.478 52.381 0.00 0.00 46.45 3.33
4825 8775 1.244816 GGTGGTTAGCCCAGTTCAAC 58.755 55.000 0.00 0.00 46.45 3.18
4826 8776 0.847373 TGGTGGTTAGCCCAGTTCAA 59.153 50.000 0.00 0.00 46.45 2.69
4827 8777 0.847373 TTGGTGGTTAGCCCAGTTCA 59.153 50.000 0.00 0.00 46.45 3.18
4828 8778 2.215942 ATTGGTGGTTAGCCCAGTTC 57.784 50.000 0.00 0.00 46.45 3.01
4829 8779 2.291346 GGTATTGGTGGTTAGCCCAGTT 60.291 50.000 0.00 0.00 46.45 3.16
4830 8780 1.283905 GGTATTGGTGGTTAGCCCAGT 59.716 52.381 0.00 0.00 46.45 4.00
4831 8781 1.564348 AGGTATTGGTGGTTAGCCCAG 59.436 52.381 0.00 0.00 46.45 4.45
4832 8782 1.676248 AGGTATTGGTGGTTAGCCCA 58.324 50.000 0.00 0.00 42.51 5.36
4833 8783 2.820728 AAGGTATTGGTGGTTAGCCC 57.179 50.000 0.00 0.00 0.00 5.19
4834 8784 3.021695 GGAAAGGTATTGGTGGTTAGCC 58.978 50.000 0.00 0.00 0.00 3.93
4835 8785 3.945921 GAGGAAAGGTATTGGTGGTTAGC 59.054 47.826 0.00 0.00 0.00 3.09
4836 8786 5.045869 TCAGAGGAAAGGTATTGGTGGTTAG 60.046 44.000 0.00 0.00 0.00 2.34
4837 8787 4.847512 TCAGAGGAAAGGTATTGGTGGTTA 59.152 41.667 0.00 0.00 0.00 2.85
4838 8788 3.655777 TCAGAGGAAAGGTATTGGTGGTT 59.344 43.478 0.00 0.00 0.00 3.67
4839 8789 3.256704 TCAGAGGAAAGGTATTGGTGGT 58.743 45.455 0.00 0.00 0.00 4.16
4840 8790 4.510167 ATCAGAGGAAAGGTATTGGTGG 57.490 45.455 0.00 0.00 0.00 4.61
4841 8791 6.127054 TGTCTATCAGAGGAAAGGTATTGGTG 60.127 42.308 0.00 0.00 0.00 4.17
4842 8792 5.964477 TGTCTATCAGAGGAAAGGTATTGGT 59.036 40.000 0.00 0.00 0.00 3.67
4843 8793 6.485830 TGTCTATCAGAGGAAAGGTATTGG 57.514 41.667 0.00 0.00 0.00 3.16
4844 8794 7.504403 ACATGTCTATCAGAGGAAAGGTATTG 58.496 38.462 0.00 0.00 0.00 1.90
4845 8795 7.345653 TGACATGTCTATCAGAGGAAAGGTATT 59.654 37.037 25.55 0.00 0.00 1.89
4846 8796 6.841229 TGACATGTCTATCAGAGGAAAGGTAT 59.159 38.462 25.55 0.00 0.00 2.73
4847 8797 6.194967 TGACATGTCTATCAGAGGAAAGGTA 58.805 40.000 25.55 0.00 0.00 3.08
4848 8798 5.026121 TGACATGTCTATCAGAGGAAAGGT 58.974 41.667 25.55 0.00 0.00 3.50
4849 8799 5.362143 TCTGACATGTCTATCAGAGGAAAGG 59.638 44.000 25.55 0.00 45.01 3.11
4850 8800 6.462552 TCTGACATGTCTATCAGAGGAAAG 57.537 41.667 25.55 10.64 45.01 2.62
4857 8807 5.787953 AGATGGTCTGACATGTCTATCAG 57.212 43.478 25.55 15.49 43.16 2.90
4858 8808 5.423290 ACAAGATGGTCTGACATGTCTATCA 59.577 40.000 25.55 19.46 0.00 2.15
4859 8809 5.911752 ACAAGATGGTCTGACATGTCTATC 58.088 41.667 25.55 18.65 0.00 2.08
4860 8810 5.946942 ACAAGATGGTCTGACATGTCTAT 57.053 39.130 25.55 12.27 0.00 1.98
4861 8811 5.127194 GGTACAAGATGGTCTGACATGTCTA 59.873 44.000 25.55 11.89 0.00 2.59
4892 8842 2.698855 ATTATCAAGTGGCGTCTGCT 57.301 45.000 0.00 0.00 42.25 4.24
4893 8843 3.717707 TCTATTATCAAGTGGCGTCTGC 58.282 45.455 0.00 0.00 41.71 4.26
4894 8844 5.569441 CGTATCTATTATCAAGTGGCGTCTG 59.431 44.000 0.00 0.00 0.00 3.51
4895 8845 5.700846 CGTATCTATTATCAAGTGGCGTCT 58.299 41.667 0.00 0.00 0.00 4.18
4900 8851 7.148407 GGGAAATGCGTATCTATTATCAAGTGG 60.148 40.741 0.00 0.00 0.00 4.00
4903 8854 8.037758 AGAGGGAAATGCGTATCTATTATCAAG 58.962 37.037 0.00 0.00 0.00 3.02
4917 8868 2.888594 TCGAAAGTAGAGGGAAATGCG 58.111 47.619 0.00 0.00 0.00 4.73
4934 8885 2.975410 ACACGACGAGTACATTTCGA 57.025 45.000 14.59 0.00 40.36 3.71
4935 8886 2.975193 TGAACACGACGAGTACATTTCG 59.025 45.455 0.00 8.08 43.38 3.46
4936 8887 3.120782 GGTGAACACGACGAGTACATTTC 59.879 47.826 0.00 0.00 0.00 2.17
4937 8888 3.054878 GGTGAACACGACGAGTACATTT 58.945 45.455 0.00 0.00 0.00 2.32
4938 8889 2.034939 TGGTGAACACGACGAGTACATT 59.965 45.455 0.00 0.00 0.00 2.71
4939 8890 1.610038 TGGTGAACACGACGAGTACAT 59.390 47.619 0.00 0.00 0.00 2.29
4957 8908 2.124983 CTCCCACGGCACTGATGG 60.125 66.667 0.00 0.00 0.00 3.51
4972 8923 3.983344 GTGTGTTGCAATTTCCATGTCTC 59.017 43.478 0.59 0.00 0.00 3.36
4981 8932 5.642919 AGTTGATGTTTGTGTGTTGCAATTT 59.357 32.000 0.59 0.00 0.00 1.82
4989 8940 4.219507 TGGACAAAGTTGATGTTTGTGTGT 59.780 37.500 5.96 0.00 45.87 3.72
4990 8941 4.742417 TGGACAAAGTTGATGTTTGTGTG 58.258 39.130 5.96 0.00 45.87 3.82
4991 8942 5.350633 CATGGACAAAGTTGATGTTTGTGT 58.649 37.500 5.96 0.00 45.87 3.72
4992 8943 4.209703 GCATGGACAAAGTTGATGTTTGTG 59.790 41.667 5.96 0.00 45.87 3.33
4993 8944 8.079201 TCAGCATGGACAAAGTTGATGTTTGT 62.079 38.462 0.96 0.96 42.12 2.83
4994 8945 4.446385 CAGCATGGACAAAGTTGATGTTTG 59.554 41.667 0.00 0.00 40.18 2.93
4995 8946 4.341806 TCAGCATGGACAAAGTTGATGTTT 59.658 37.500 0.00 0.00 36.16 2.83
4996 8947 3.890756 TCAGCATGGACAAAGTTGATGTT 59.109 39.130 0.00 0.00 36.16 2.71
4998 8949 4.508461 TTCAGCATGGACAAAGTTGATG 57.492 40.909 0.00 0.00 36.16 3.07
4999 8950 6.379133 ACATATTCAGCATGGACAAAGTTGAT 59.621 34.615 0.00 0.00 36.16 2.57
5001 8952 5.957798 ACATATTCAGCATGGACAAAGTTG 58.042 37.500 0.00 0.00 36.16 3.16
5002 8953 6.658816 TGTACATATTCAGCATGGACAAAGTT 59.341 34.615 0.00 0.00 42.84 2.66
5008 8959 6.705825 TGTACATGTACATATTCAGCATGGAC 59.294 38.462 30.31 10.29 46.18 4.02
5009 8960 6.825610 TGTACATGTACATATTCAGCATGGA 58.174 36.000 30.31 6.70 40.77 3.41
5023 8974 5.742453 CGACTGAACCTGTATGTACATGTAC 59.258 44.000 25.99 25.99 34.64 2.90
5024 8975 5.648960 TCGACTGAACCTGTATGTACATGTA 59.351 40.000 18.81 0.08 34.64 2.29
5025 8976 4.461431 TCGACTGAACCTGTATGTACATGT 59.539 41.667 18.81 2.69 36.77 3.21
5026 8977 4.993905 TCGACTGAACCTGTATGTACATG 58.006 43.478 18.81 4.00 35.36 3.21
5027 8978 5.654603 TTCGACTGAACCTGTATGTACAT 57.345 39.130 13.93 13.93 35.36 2.29
5028 8979 5.456548 TTTCGACTGAACCTGTATGTACA 57.543 39.130 0.00 0.00 32.71 2.90
5029 8980 5.119743 GGTTTTCGACTGAACCTGTATGTAC 59.880 44.000 14.25 0.00 41.62 2.90
5030 8981 5.221481 TGGTTTTCGACTGAACCTGTATGTA 60.221 40.000 19.48 2.02 44.44 2.29
5031 8982 4.062991 GGTTTTCGACTGAACCTGTATGT 58.937 43.478 14.25 0.00 41.62 2.29
5032 8983 4.062293 TGGTTTTCGACTGAACCTGTATG 58.938 43.478 19.48 0.00 44.44 2.39
5033 8984 4.345859 TGGTTTTCGACTGAACCTGTAT 57.654 40.909 19.48 0.00 44.44 2.29
5034 8985 3.823281 TGGTTTTCGACTGAACCTGTA 57.177 42.857 19.48 3.65 44.44 2.74
5035 8986 2.702592 TGGTTTTCGACTGAACCTGT 57.297 45.000 19.48 0.00 44.44 4.00
5036 8987 3.488553 GGTTTGGTTTTCGACTGAACCTG 60.489 47.826 19.48 0.00 44.44 4.00
5037 8988 2.686405 GGTTTGGTTTTCGACTGAACCT 59.314 45.455 19.48 0.00 44.44 3.50
5038 8989 2.424246 TGGTTTGGTTTTCGACTGAACC 59.576 45.455 14.52 14.52 44.40 3.62
5039 8990 3.768468 TGGTTTGGTTTTCGACTGAAC 57.232 42.857 0.00 0.00 32.71 3.18
5040 8991 4.218852 AGTTTGGTTTGGTTTTCGACTGAA 59.781 37.500 0.00 0.00 0.00 3.02
5041 8992 3.759618 AGTTTGGTTTGGTTTTCGACTGA 59.240 39.130 0.00 0.00 0.00 3.41
5042 8993 4.104696 AGTTTGGTTTGGTTTTCGACTG 57.895 40.909 0.00 0.00 0.00 3.51
5043 8994 5.900865 TTAGTTTGGTTTGGTTTTCGACT 57.099 34.783 0.00 0.00 0.00 4.18
5044 8995 6.947903 TTTTAGTTTGGTTTGGTTTTCGAC 57.052 33.333 0.00 0.00 0.00 4.20
5045 8996 6.757478 GGATTTTAGTTTGGTTTGGTTTTCGA 59.243 34.615 0.00 0.00 0.00 3.71
5046 8997 6.535508 TGGATTTTAGTTTGGTTTGGTTTTCG 59.464 34.615 0.00 0.00 0.00 3.46
5047 8998 7.464844 CGTGGATTTTAGTTTGGTTTGGTTTTC 60.465 37.037 0.00 0.00 0.00 2.29
5048 8999 6.314152 CGTGGATTTTAGTTTGGTTTGGTTTT 59.686 34.615 0.00 0.00 0.00 2.43
5049 9000 5.813157 CGTGGATTTTAGTTTGGTTTGGTTT 59.187 36.000 0.00 0.00 0.00 3.27
5050 9001 5.105269 ACGTGGATTTTAGTTTGGTTTGGTT 60.105 36.000 0.00 0.00 0.00 3.67
5051 9002 4.403113 ACGTGGATTTTAGTTTGGTTTGGT 59.597 37.500 0.00 0.00 0.00 3.67
5052 9003 4.939271 ACGTGGATTTTAGTTTGGTTTGG 58.061 39.130 0.00 0.00 0.00 3.28
5053 9004 5.233263 CCAACGTGGATTTTAGTTTGGTTTG 59.767 40.000 0.00 0.00 40.96 2.93
5054 9005 5.353111 CCAACGTGGATTTTAGTTTGGTTT 58.647 37.500 0.00 0.00 40.96 3.27
5055 9006 4.738243 GCCAACGTGGATTTTAGTTTGGTT 60.738 41.667 8.04 0.00 40.96 3.67
5056 9007 3.243602 GCCAACGTGGATTTTAGTTTGGT 60.244 43.478 8.04 0.00 40.96 3.67
5057 9008 3.243569 TGCCAACGTGGATTTTAGTTTGG 60.244 43.478 8.04 0.00 40.96 3.28
5058 9009 3.733727 GTGCCAACGTGGATTTTAGTTTG 59.266 43.478 8.04 0.00 40.96 2.93
5059 9010 3.549221 CGTGCCAACGTGGATTTTAGTTT 60.549 43.478 8.04 0.00 44.93 2.66
5060 9011 2.031508 CGTGCCAACGTGGATTTTAGTT 60.032 45.455 8.04 0.00 44.93 2.24
5061 9012 1.533731 CGTGCCAACGTGGATTTTAGT 59.466 47.619 8.04 0.00 44.93 2.24
5062 9013 2.241259 CGTGCCAACGTGGATTTTAG 57.759 50.000 8.04 0.00 44.93 1.85
5070 9021 9.577752 GTTCAAAAACAATATCGTGCCAACGTG 62.578 40.741 0.00 0.00 41.64 4.49
5071 9022 7.701222 GTTCAAAAACAATATCGTGCCAACGT 61.701 38.462 0.00 0.00 41.64 3.99
5072 9023 5.386933 GTTCAAAAACAATATCGTGCCAACG 60.387 40.000 0.00 0.00 41.97 4.10
5073 9024 5.107645 GGTTCAAAAACAATATCGTGCCAAC 60.108 40.000 0.00 0.00 37.10 3.77
5074 9025 4.985409 GGTTCAAAAACAATATCGTGCCAA 59.015 37.500 0.00 0.00 37.10 4.52
5075 9026 4.551388 GGTTCAAAAACAATATCGTGCCA 58.449 39.130 0.00 0.00 37.10 4.92
5088 9039 2.612212 GTGCTCTCAGTCGGTTCAAAAA 59.388 45.455 0.00 0.00 0.00 1.94
5109 9060 2.092968 TCTCCTGGATGTTTTCCCATCG 60.093 50.000 0.00 0.00 44.77 3.84
5121 9072 4.383931 AAAGCATGCATATCTCCTGGAT 57.616 40.909 21.98 0.00 38.38 3.41
5151 9102 4.687483 CCACAAGAAATTTGTCCTTGCATC 59.313 41.667 14.72 0.00 40.51 3.91
5153 9104 3.703556 TCCACAAGAAATTTGTCCTTGCA 59.296 39.130 14.72 0.00 40.51 4.08
5162 9113 9.710900 GTCCAAAATATCTTCCACAAGAAATTT 57.289 29.630 0.00 0.00 42.14 1.82
5169 9120 4.698304 GTCCGTCCAAAATATCTTCCACAA 59.302 41.667 0.00 0.00 0.00 3.33
5170 9121 4.258543 GTCCGTCCAAAATATCTTCCACA 58.741 43.478 0.00 0.00 0.00 4.17
5171 9122 4.258543 TGTCCGTCCAAAATATCTTCCAC 58.741 43.478 0.00 0.00 0.00 4.02
5172 9123 4.561500 TGTCCGTCCAAAATATCTTCCA 57.438 40.909 0.00 0.00 0.00 3.53
5173 9124 4.941873 AGTTGTCCGTCCAAAATATCTTCC 59.058 41.667 0.00 0.00 0.00 3.46
5174 9125 6.403309 GGAAGTTGTCCGTCCAAAATATCTTC 60.403 42.308 0.00 0.00 41.01 2.87
5175 9126 5.414765 GGAAGTTGTCCGTCCAAAATATCTT 59.585 40.000 0.00 0.00 41.01 2.40
5176 9127 4.941873 GGAAGTTGTCCGTCCAAAATATCT 59.058 41.667 0.00 0.00 41.01 1.98
5177 9128 5.231265 GGAAGTTGTCCGTCCAAAATATC 57.769 43.478 0.00 0.00 41.01 1.63
5190 9141 0.307760 CTGCGGTTGTGGAAGTTGTC 59.692 55.000 0.00 0.00 0.00 3.18
5191 9142 1.724582 GCTGCGGTTGTGGAAGTTGT 61.725 55.000 0.00 0.00 0.00 3.32
5192 9143 1.008538 GCTGCGGTTGTGGAAGTTG 60.009 57.895 0.00 0.00 0.00 3.16
5193 9144 2.193536 GGCTGCGGTTGTGGAAGTT 61.194 57.895 0.00 0.00 0.00 2.66
5194 9145 2.594592 GGCTGCGGTTGTGGAAGT 60.595 61.111 0.00 0.00 0.00 3.01
5195 9146 3.365265 GGGCTGCGGTTGTGGAAG 61.365 66.667 0.00 0.00 0.00 3.46
5196 9147 4.966787 GGGGCTGCGGTTGTGGAA 62.967 66.667 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.