Multiple sequence alignment - TraesCS5B01G333900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G333900 chr5B 100.000 2702 0 0 532 3233 517583801 517586502 0.000000e+00 4990
1 TraesCS5B01G333900 chr5B 86.762 559 55 8 2680 3222 297900784 297900229 3.570000e-169 604
2 TraesCS5B01G333900 chr5B 86.292 569 51 14 2681 3233 262048759 262048202 7.720000e-166 593
3 TraesCS5B01G333900 chr5B 100.000 236 0 0 1 236 517583270 517583505 1.380000e-118 436
4 TraesCS5B01G333900 chr5B 93.085 188 13 0 1778 1965 517584978 517585165 3.180000e-70 276
5 TraesCS5B01G333900 chr5B 93.085 188 13 0 1709 1896 517585047 517585234 3.180000e-70 276
6 TraesCS5B01G333900 chr5D 92.378 1207 51 21 705 1896 428392638 428393818 0.000000e+00 1681
7 TraesCS5B01G333900 chr5D 87.452 1044 76 32 1506 2524 428467922 428468935 0.000000e+00 1151
8 TraesCS5B01G333900 chr5D 91.480 716 38 13 1856 2560 428463166 428463869 0.000000e+00 963
9 TraesCS5B01G333900 chr5D 88.235 765 55 18 1778 2524 428393631 428394378 0.000000e+00 881
10 TraesCS5B01G333900 chr5D 92.021 188 15 0 1778 1965 428468106 428468293 6.880000e-67 265
11 TraesCS5B01G333900 chr5D 92.021 188 15 0 1709 1896 428468175 428468362 6.880000e-67 265
12 TraesCS5B01G333900 chr5D 84.559 136 20 1 1126 1260 286963606 286963471 2.020000e-27 134
13 TraesCS5B01G333900 chr5A 90.145 1238 87 16 683 1896 543962289 543963515 0.000000e+00 1578
14 TraesCS5B01G333900 chr5A 88.381 766 54 21 1782 2525 543963332 543964084 0.000000e+00 889
15 TraesCS5B01G333900 chr2A 88.466 945 67 25 782 1713 72910098 72911013 0.000000e+00 1103
16 TraesCS5B01G333900 chr2A 85.159 566 54 16 2683 3233 102402788 102403338 1.310000e-153 553
17 TraesCS5B01G333900 chr2A 80.990 384 49 11 1895 2254 72911021 72911404 1.900000e-72 283
18 TraesCS5B01G333900 chr2D 87.725 945 74 25 782 1713 73425198 73426113 0.000000e+00 1064
19 TraesCS5B01G333900 chr2D 85.589 569 62 11 2681 3233 15372214 15371650 2.160000e-161 579
20 TraesCS5B01G333900 chr2B 87.527 938 75 28 791 1713 111171131 111172041 0.000000e+00 1046
21 TraesCS5B01G333900 chr2B 80.769 390 45 15 1895 2254 111172049 111172438 8.830000e-71 278
22 TraesCS5B01G333900 chr3D 87.302 567 59 7 2677 3233 10465592 10466155 1.270000e-178 636
23 TraesCS5B01G333900 chr3D 84.321 574 52 23 2683 3233 556955763 556955205 7.940000e-146 527
24 TraesCS5B01G333900 chr3D 87.597 129 16 0 1132 1260 589420986 589420858 2.010000e-32 150
25 TraesCS5B01G333900 chr1B 86.809 561 55 11 2680 3224 623238316 623238873 2.760000e-170 608
26 TraesCS5B01G333900 chr7B 86.092 568 57 9 2683 3233 648494943 648495505 2.780000e-165 592
27 TraesCS5B01G333900 chr7B 85.789 570 63 9 2681 3233 648391752 648391184 3.590000e-164 588
28 TraesCS5B01G333900 chr7B 85.915 568 55 10 2683 3233 648547661 648548220 1.670000e-162 582
29 TraesCS5B01G333900 chr7B 85.413 569 59 11 2683 3233 648585537 648586099 1.300000e-158 569
30 TraesCS5B01G333900 chr7B 85.237 569 52 11 2681 3233 164582398 164581846 1.010000e-154 556
31 TraesCS5B01G333900 chr4A 85.893 560 60 10 2678 3222 42114715 42115270 2.160000e-161 579
32 TraesCS5B01G333900 chr6D 84.520 562 60 15 2680 3233 392581732 392581190 6.140000e-147 531
33 TraesCS5B01G333900 chr6D 83.688 564 68 12 2687 3233 297258234 297257678 8.000000e-141 510
34 TraesCS5B01G333900 chr7D 82.784 273 33 7 2975 3233 7710402 7710674 6.980000e-57 231


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G333900 chr5B 517583270 517586502 3232 False 1494.500000 4990 96.5425 1 3233 4 chr5B.!!$F1 3232
1 TraesCS5B01G333900 chr5B 297900229 297900784 555 True 604.000000 604 86.7620 2680 3222 1 chr5B.!!$R2 542
2 TraesCS5B01G333900 chr5B 262048202 262048759 557 True 593.000000 593 86.2920 2681 3233 1 chr5B.!!$R1 552
3 TraesCS5B01G333900 chr5D 428392638 428394378 1740 False 1281.000000 1681 90.3065 705 2524 2 chr5D.!!$F2 1819
4 TraesCS5B01G333900 chr5D 428463166 428463869 703 False 963.000000 963 91.4800 1856 2560 1 chr5D.!!$F1 704
5 TraesCS5B01G333900 chr5D 428467922 428468935 1013 False 560.333333 1151 90.4980 1506 2524 3 chr5D.!!$F3 1018
6 TraesCS5B01G333900 chr5A 543962289 543964084 1795 False 1233.500000 1578 89.2630 683 2525 2 chr5A.!!$F1 1842
7 TraesCS5B01G333900 chr2A 72910098 72911404 1306 False 693.000000 1103 84.7280 782 2254 2 chr2A.!!$F2 1472
8 TraesCS5B01G333900 chr2A 102402788 102403338 550 False 553.000000 553 85.1590 2683 3233 1 chr2A.!!$F1 550
9 TraesCS5B01G333900 chr2D 73425198 73426113 915 False 1064.000000 1064 87.7250 782 1713 1 chr2D.!!$F1 931
10 TraesCS5B01G333900 chr2D 15371650 15372214 564 True 579.000000 579 85.5890 2681 3233 1 chr2D.!!$R1 552
11 TraesCS5B01G333900 chr2B 111171131 111172438 1307 False 662.000000 1046 84.1480 791 2254 2 chr2B.!!$F1 1463
12 TraesCS5B01G333900 chr3D 10465592 10466155 563 False 636.000000 636 87.3020 2677 3233 1 chr3D.!!$F1 556
13 TraesCS5B01G333900 chr3D 556955205 556955763 558 True 527.000000 527 84.3210 2683 3233 1 chr3D.!!$R1 550
14 TraesCS5B01G333900 chr1B 623238316 623238873 557 False 608.000000 608 86.8090 2680 3224 1 chr1B.!!$F1 544
15 TraesCS5B01G333900 chr7B 648494943 648495505 562 False 592.000000 592 86.0920 2683 3233 1 chr7B.!!$F1 550
16 TraesCS5B01G333900 chr7B 648391184 648391752 568 True 588.000000 588 85.7890 2681 3233 1 chr7B.!!$R2 552
17 TraesCS5B01G333900 chr7B 648547661 648548220 559 False 582.000000 582 85.9150 2683 3233 1 chr7B.!!$F2 550
18 TraesCS5B01G333900 chr7B 648585537 648586099 562 False 569.000000 569 85.4130 2683 3233 1 chr7B.!!$F3 550
19 TraesCS5B01G333900 chr7B 164581846 164582398 552 True 556.000000 556 85.2370 2681 3233 1 chr7B.!!$R1 552
20 TraesCS5B01G333900 chr4A 42114715 42115270 555 False 579.000000 579 85.8930 2678 3222 1 chr4A.!!$F1 544
21 TraesCS5B01G333900 chr6D 392581190 392581732 542 True 531.000000 531 84.5200 2680 3233 1 chr6D.!!$R2 553
22 TraesCS5B01G333900 chr6D 297257678 297258234 556 True 510.000000 510 83.6880 2687 3233 1 chr6D.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
932 968 0.031043 CACCATGCACAACCACACAG 59.969 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2664 2854 0.036388 CTTAGACAAAGCCAGCCCGA 60.036 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.857251 CCCTAATTCGCCGCTTCT 57.143 55.556 0.00 0.00 0.00 2.85
18 19 2.606275 CCCTAATTCGCCGCTTCTC 58.394 57.895 0.00 0.00 0.00 2.87
19 20 1.215655 CCCTAATTCGCCGCTTCTCG 61.216 60.000 0.00 0.00 38.08 4.04
20 21 1.560292 CTAATTCGCCGCTTCTCGC 59.440 57.895 0.00 0.00 36.73 5.03
21 22 1.822250 CTAATTCGCCGCTTCTCGCC 61.822 60.000 0.00 0.00 36.73 5.54
22 23 2.292794 TAATTCGCCGCTTCTCGCCT 62.293 55.000 0.00 0.00 36.73 5.52
23 24 2.292794 AATTCGCCGCTTCTCGCCTA 62.293 55.000 0.00 0.00 36.73 3.93
24 25 2.088674 ATTCGCCGCTTCTCGCCTAT 62.089 55.000 0.00 0.00 36.73 2.57
25 26 2.954020 TTCGCCGCTTCTCGCCTATG 62.954 60.000 0.00 0.00 36.73 2.23
26 27 3.341835 GCCGCTTCTCGCCTATGC 61.342 66.667 0.00 0.00 36.73 3.14
27 28 2.106938 CCGCTTCTCGCCTATGCA 59.893 61.111 0.00 0.00 37.32 3.96
28 29 1.953138 CCGCTTCTCGCCTATGCAG 60.953 63.158 0.00 0.00 37.32 4.41
29 30 1.066422 CGCTTCTCGCCTATGCAGA 59.934 57.895 0.00 0.00 37.32 4.26
30 31 1.211818 CGCTTCTCGCCTATGCAGAC 61.212 60.000 0.00 0.00 37.32 3.51
31 32 0.179100 GCTTCTCGCCTATGCAGACA 60.179 55.000 0.00 0.00 37.32 3.41
32 33 1.565305 CTTCTCGCCTATGCAGACAC 58.435 55.000 0.00 0.00 37.32 3.67
33 34 0.179137 TTCTCGCCTATGCAGACACG 60.179 55.000 0.00 0.00 37.32 4.49
34 35 1.589993 CTCGCCTATGCAGACACGG 60.590 63.158 0.00 0.00 37.32 4.94
35 36 2.004808 CTCGCCTATGCAGACACGGA 62.005 60.000 0.00 0.00 37.32 4.69
36 37 1.589993 CGCCTATGCAGACACGGAG 60.590 63.158 0.00 0.00 37.32 4.63
37 38 1.227380 GCCTATGCAGACACGGAGG 60.227 63.158 0.00 0.00 37.47 4.30
38 39 1.443407 CCTATGCAGACACGGAGGG 59.557 63.158 0.00 0.00 0.00 4.30
39 40 1.227380 CTATGCAGACACGGAGGGC 60.227 63.158 0.00 0.00 0.00 5.19
40 41 1.680522 CTATGCAGACACGGAGGGCT 61.681 60.000 0.00 0.00 0.00 5.19
41 42 1.264749 TATGCAGACACGGAGGGCTT 61.265 55.000 0.00 0.00 0.00 4.35
42 43 2.435059 GCAGACACGGAGGGCTTC 60.435 66.667 0.00 0.00 0.00 3.86
43 44 2.266055 CAGACACGGAGGGCTTCC 59.734 66.667 5.40 5.40 43.04 3.46
44 45 2.120718 AGACACGGAGGGCTTCCT 59.879 61.111 14.27 0.00 44.41 3.36
52 53 4.160818 AGGGCTTCCTCCTTCCTG 57.839 61.111 0.00 0.00 35.60 3.86
53 54 2.273776 GGGCTTCCTCCTTCCTGC 59.726 66.667 0.00 0.00 0.00 4.85
54 55 2.273776 GGCTTCCTCCTTCCTGCC 59.726 66.667 0.00 0.00 0.00 4.85
55 56 2.273776 GCTTCCTCCTTCCTGCCC 59.726 66.667 0.00 0.00 0.00 5.36
56 57 2.606587 GCTTCCTCCTTCCTGCCCA 61.607 63.158 0.00 0.00 0.00 5.36
57 58 1.931007 GCTTCCTCCTTCCTGCCCAT 61.931 60.000 0.00 0.00 0.00 4.00
58 59 0.106819 CTTCCTCCTTCCTGCCCATG 60.107 60.000 0.00 0.00 0.00 3.66
59 60 2.123982 CCTCCTTCCTGCCCATGC 60.124 66.667 0.00 0.00 38.26 4.06
60 61 2.123982 CTCCTTCCTGCCCATGCC 60.124 66.667 0.00 0.00 36.33 4.40
61 62 4.113815 TCCTTCCTGCCCATGCCG 62.114 66.667 0.00 0.00 36.33 5.69
63 64 4.431131 CTTCCTGCCCATGCCGGT 62.431 66.667 1.90 0.00 42.12 5.28
64 65 4.738998 TTCCTGCCCATGCCGGTG 62.739 66.667 1.90 0.00 42.12 4.94
71 72 3.133464 CCATGCCGGTGTGCGATT 61.133 61.111 1.90 0.00 0.00 3.34
72 73 2.404789 CATGCCGGTGTGCGATTC 59.595 61.111 1.90 0.00 0.00 2.52
73 74 2.824041 ATGCCGGTGTGCGATTCC 60.824 61.111 1.90 0.00 0.00 3.01
88 89 4.889112 TCCGCCGGCTCCGTCTAT 62.889 66.667 26.68 0.00 37.81 1.98
89 90 4.344474 CCGCCGGCTCCGTCTATC 62.344 72.222 26.68 0.00 37.81 2.08
90 91 3.592814 CGCCGGCTCCGTCTATCA 61.593 66.667 26.68 0.00 37.81 2.15
91 92 2.336809 GCCGGCTCCGTCTATCAG 59.663 66.667 22.15 0.00 37.81 2.90
92 93 3.043419 CCGGCTCCGTCTATCAGG 58.957 66.667 7.59 0.00 37.81 3.86
93 94 2.336809 CGGCTCCGTCTATCAGGC 59.663 66.667 0.00 0.00 34.35 4.85
94 95 2.737830 GGCTCCGTCTATCAGGCC 59.262 66.667 0.00 0.00 0.00 5.19
95 96 2.134287 GGCTCCGTCTATCAGGCCA 61.134 63.158 5.01 0.00 39.38 5.36
96 97 1.476007 GGCTCCGTCTATCAGGCCAT 61.476 60.000 5.01 0.00 39.38 4.40
97 98 0.037790 GCTCCGTCTATCAGGCCATC 60.038 60.000 5.01 0.00 0.00 3.51
98 99 0.242286 CTCCGTCTATCAGGCCATCG 59.758 60.000 5.01 0.00 0.00 3.84
99 100 0.179001 TCCGTCTATCAGGCCATCGA 60.179 55.000 5.01 0.00 0.00 3.59
100 101 0.673985 CCGTCTATCAGGCCATCGAA 59.326 55.000 5.01 0.00 0.00 3.71
101 102 1.336332 CCGTCTATCAGGCCATCGAAG 60.336 57.143 5.01 0.00 0.00 3.79
102 103 1.789506 GTCTATCAGGCCATCGAAGC 58.210 55.000 5.01 2.31 0.00 3.86
108 109 3.577313 GGCCATCGAAGCCGCTTC 61.577 66.667 21.22 21.22 41.41 3.86
109 110 2.512515 GCCATCGAAGCCGCTTCT 60.513 61.111 26.53 9.90 38.24 2.85
110 111 2.817423 GCCATCGAAGCCGCTTCTG 61.817 63.158 26.53 19.54 38.24 3.02
111 112 2.705826 CATCGAAGCCGCTTCTGC 59.294 61.111 26.53 5.96 38.24 4.26
112 113 1.812922 CATCGAAGCCGCTTCTGCT 60.813 57.895 26.53 11.98 41.89 4.24
116 117 4.481195 AAGCCGCTTCTGCTTCAA 57.519 50.000 0.00 0.00 45.58 2.69
117 118 2.251600 AAGCCGCTTCTGCTTCAAG 58.748 52.632 0.00 0.00 45.58 3.02
118 119 1.239968 AAGCCGCTTCTGCTTCAAGG 61.240 55.000 0.00 0.00 45.58 3.61
119 120 2.873288 CCGCTTCTGCTTCAAGGC 59.127 61.111 0.00 0.00 36.97 4.35
120 121 2.694760 CCGCTTCTGCTTCAAGGCC 61.695 63.158 0.00 0.00 36.97 5.19
121 122 2.694760 CGCTTCTGCTTCAAGGCCC 61.695 63.158 0.00 0.00 36.97 5.80
122 123 2.694760 GCTTCTGCTTCAAGGCCCG 61.695 63.158 0.00 0.00 36.03 6.13
123 124 2.672996 TTCTGCTTCAAGGCCCGC 60.673 61.111 0.00 0.00 0.00 6.13
124 125 4.722700 TCTGCTTCAAGGCCCGCC 62.723 66.667 0.00 0.00 0.00 6.13
153 154 3.491652 GGCGCGTGCTTCCTTCTC 61.492 66.667 21.89 0.00 42.25 2.87
154 155 3.843240 GCGCGTGCTTCCTTCTCG 61.843 66.667 15.02 0.00 38.39 4.04
155 156 2.430921 CGCGTGCTTCCTTCTCGT 60.431 61.111 0.00 0.00 0.00 4.18
156 157 2.022129 CGCGTGCTTCCTTCTCGTT 61.022 57.895 0.00 0.00 0.00 3.85
157 158 1.557443 CGCGTGCTTCCTTCTCGTTT 61.557 55.000 0.00 0.00 0.00 3.60
158 159 0.586802 GCGTGCTTCCTTCTCGTTTT 59.413 50.000 0.00 0.00 0.00 2.43
159 160 1.660333 GCGTGCTTCCTTCTCGTTTTG 60.660 52.381 0.00 0.00 0.00 2.44
160 161 1.069906 CGTGCTTCCTTCTCGTTTTGG 60.070 52.381 0.00 0.00 0.00 3.28
161 162 0.951558 TGCTTCCTTCTCGTTTTGGC 59.048 50.000 0.00 0.00 0.00 4.52
162 163 0.241213 GCTTCCTTCTCGTTTTGGCC 59.759 55.000 0.00 0.00 0.00 5.36
163 164 1.604604 CTTCCTTCTCGTTTTGGCCA 58.395 50.000 0.00 0.00 0.00 5.36
164 165 1.266989 CTTCCTTCTCGTTTTGGCCAC 59.733 52.381 3.88 0.00 0.00 5.01
165 166 0.181587 TCCTTCTCGTTTTGGCCACA 59.818 50.000 3.88 0.00 0.00 4.17
166 167 1.028905 CCTTCTCGTTTTGGCCACAA 58.971 50.000 3.88 0.86 34.07 3.33
167 168 1.407258 CCTTCTCGTTTTGGCCACAAA 59.593 47.619 3.88 6.99 44.40 2.83
168 169 2.459934 CTTCTCGTTTTGGCCACAAAC 58.540 47.619 22.96 22.96 45.64 2.93
169 170 0.741915 TCTCGTTTTGGCCACAAACC 59.258 50.000 24.99 9.19 45.64 3.27
170 171 0.457851 CTCGTTTTGGCCACAAACCA 59.542 50.000 24.99 17.58 45.64 3.67
171 172 1.068434 CTCGTTTTGGCCACAAACCAT 59.932 47.619 24.99 0.00 45.64 3.55
172 173 1.202463 TCGTTTTGGCCACAAACCATG 60.202 47.619 24.99 16.90 45.64 3.66
173 174 1.592064 GTTTTGGCCACAAACCATGG 58.408 50.000 22.60 11.19 45.64 3.66
174 175 1.139853 GTTTTGGCCACAAACCATGGA 59.860 47.619 21.47 0.00 45.64 3.41
175 176 1.047002 TTTGGCCACAAACCATGGAG 58.953 50.000 21.47 10.40 41.42 3.86
176 177 0.831288 TTGGCCACAAACCATGGAGG 60.831 55.000 21.47 12.60 39.87 4.30
177 178 2.973082 GCCACAAACCATGGAGGC 59.027 61.111 21.47 18.31 43.87 4.70
178 179 2.993471 GCCACAAACCATGGAGGCG 61.993 63.158 21.47 6.20 42.13 5.52
179 180 2.342650 CCACAAACCATGGAGGCGG 61.343 63.158 21.47 8.15 43.14 6.13
180 181 1.303236 CACAAACCATGGAGGCGGA 60.303 57.895 21.47 0.00 43.14 5.54
181 182 0.680921 CACAAACCATGGAGGCGGAT 60.681 55.000 21.47 0.00 43.14 4.18
182 183 0.916086 ACAAACCATGGAGGCGGATA 59.084 50.000 21.47 0.00 43.14 2.59
183 184 1.494721 ACAAACCATGGAGGCGGATAT 59.505 47.619 21.47 0.00 43.14 1.63
184 185 1.881973 CAAACCATGGAGGCGGATATG 59.118 52.381 21.47 0.00 43.14 1.78
185 186 1.434188 AACCATGGAGGCGGATATGA 58.566 50.000 21.47 0.00 43.14 2.15
186 187 0.687354 ACCATGGAGGCGGATATGAC 59.313 55.000 21.47 0.00 43.14 3.06
187 188 0.036010 CCATGGAGGCGGATATGACC 60.036 60.000 5.56 0.00 0.00 4.02
188 189 0.979665 CATGGAGGCGGATATGACCT 59.020 55.000 0.00 0.00 36.19 3.85
219 220 4.227134 CGAGGCCACGGGGATGAG 62.227 72.222 8.67 0.00 35.59 2.90
220 221 2.764128 GAGGCCACGGGGATGAGA 60.764 66.667 8.67 0.00 35.59 3.27
221 222 3.083997 AGGCCACGGGGATGAGAC 61.084 66.667 8.67 0.00 35.59 3.36
222 223 4.530857 GGCCACGGGGATGAGACG 62.531 72.222 8.67 0.00 35.59 4.18
224 225 4.530857 CCACGGGGATGAGACGCC 62.531 72.222 0.00 0.00 39.11 5.68
225 226 3.770040 CACGGGGATGAGACGCCA 61.770 66.667 0.00 0.00 41.95 5.69
226 227 3.771160 ACGGGGATGAGACGCCAC 61.771 66.667 0.00 0.00 41.95 5.01
227 228 4.530857 CGGGGATGAGACGCCACC 62.531 72.222 0.00 0.00 41.95 4.61
228 229 3.083997 GGGGATGAGACGCCACCT 61.084 66.667 0.00 0.00 41.56 4.00
229 230 1.760875 GGGGATGAGACGCCACCTA 60.761 63.158 0.00 0.00 41.56 3.08
230 231 1.335132 GGGGATGAGACGCCACCTAA 61.335 60.000 0.00 0.00 41.56 2.69
231 232 0.539986 GGGATGAGACGCCACCTAAA 59.460 55.000 0.00 0.00 0.00 1.85
232 233 1.653151 GGATGAGACGCCACCTAAAC 58.347 55.000 0.00 0.00 0.00 2.01
233 234 1.278238 GATGAGACGCCACCTAAACG 58.722 55.000 0.00 0.00 0.00 3.60
234 235 0.108329 ATGAGACGCCACCTAAACGG 60.108 55.000 0.00 0.00 39.35 4.44
550 551 1.421480 GGTATCCCTATATCCGCCCC 58.579 60.000 0.00 0.00 0.00 5.80
551 552 1.343681 GGTATCCCTATATCCGCCCCA 60.344 57.143 0.00 0.00 0.00 4.96
552 553 1.761198 GTATCCCTATATCCGCCCCAC 59.239 57.143 0.00 0.00 0.00 4.61
553 554 0.118346 ATCCCTATATCCGCCCCACA 59.882 55.000 0.00 0.00 0.00 4.17
554 555 0.118346 TCCCTATATCCGCCCCACAT 59.882 55.000 0.00 0.00 0.00 3.21
555 556 1.363280 TCCCTATATCCGCCCCACATA 59.637 52.381 0.00 0.00 0.00 2.29
556 557 2.022428 TCCCTATATCCGCCCCACATAT 60.022 50.000 0.00 0.00 0.00 1.78
557 558 2.104792 CCCTATATCCGCCCCACATATG 59.895 54.545 0.00 0.00 0.00 1.78
558 559 3.038280 CCTATATCCGCCCCACATATGA 58.962 50.000 10.38 0.00 0.00 2.15
559 560 3.070159 CCTATATCCGCCCCACATATGAG 59.930 52.174 10.38 0.54 0.00 2.90
560 561 0.613260 TATCCGCCCCACATATGAGC 59.387 55.000 10.38 5.79 0.00 4.26
561 562 1.130054 ATCCGCCCCACATATGAGCT 61.130 55.000 10.38 0.00 0.00 4.09
562 563 0.471022 TCCGCCCCACATATGAGCTA 60.471 55.000 10.38 0.00 0.00 3.32
563 564 0.036952 CCGCCCCACATATGAGCTAG 60.037 60.000 10.38 0.00 0.00 3.42
564 565 0.969149 CGCCCCACATATGAGCTAGA 59.031 55.000 10.38 0.00 0.00 2.43
565 566 1.552337 CGCCCCACATATGAGCTAGAT 59.448 52.381 10.38 0.00 0.00 1.98
566 567 2.760650 CGCCCCACATATGAGCTAGATA 59.239 50.000 10.38 0.00 0.00 1.98
567 568 3.386078 CGCCCCACATATGAGCTAGATAT 59.614 47.826 10.38 0.00 0.00 1.63
568 569 4.701765 GCCCCACATATGAGCTAGATATG 58.298 47.826 10.38 17.85 38.99 1.78
569 570 4.444022 GCCCCACATATGAGCTAGATATGG 60.444 50.000 21.22 9.97 37.88 2.74
570 571 4.102210 CCCCACATATGAGCTAGATATGGG 59.898 50.000 21.22 18.73 37.88 4.00
571 572 5.287674 CCACATATGAGCTAGATATGGGG 57.712 47.826 23.12 23.12 46.22 4.96
572 573 4.718774 CCACATATGAGCTAGATATGGGGT 59.281 45.833 25.78 8.65 46.25 4.95
573 574 5.190528 CCACATATGAGCTAGATATGGGGTT 59.809 44.000 25.78 8.39 46.25 4.11
574 575 6.111382 CACATATGAGCTAGATATGGGGTTG 58.889 44.000 21.22 11.61 37.88 3.77
575 576 5.787494 ACATATGAGCTAGATATGGGGTTGT 59.213 40.000 21.22 5.93 37.88 3.32
576 577 4.899352 ATGAGCTAGATATGGGGTTGTC 57.101 45.455 0.00 0.00 0.00 3.18
577 578 3.653164 TGAGCTAGATATGGGGTTGTCA 58.347 45.455 0.00 0.00 0.00 3.58
578 579 3.643320 TGAGCTAGATATGGGGTTGTCAG 59.357 47.826 0.00 0.00 0.00 3.51
579 580 3.643792 GAGCTAGATATGGGGTTGTCAGT 59.356 47.826 0.00 0.00 0.00 3.41
580 581 3.643792 AGCTAGATATGGGGTTGTCAGTC 59.356 47.826 0.00 0.00 0.00 3.51
581 582 3.388024 GCTAGATATGGGGTTGTCAGTCA 59.612 47.826 0.00 0.00 0.00 3.41
582 583 4.502259 GCTAGATATGGGGTTGTCAGTCAG 60.502 50.000 0.00 0.00 0.00 3.51
583 584 3.454858 AGATATGGGGTTGTCAGTCAGT 58.545 45.455 0.00 0.00 0.00 3.41
584 585 3.452627 AGATATGGGGTTGTCAGTCAGTC 59.547 47.826 0.00 0.00 0.00 3.51
585 586 1.734655 ATGGGGTTGTCAGTCAGTCT 58.265 50.000 0.00 0.00 0.00 3.24
586 587 0.758734 TGGGGTTGTCAGTCAGTCTG 59.241 55.000 0.00 0.00 44.85 3.51
587 588 0.035458 GGGGTTGTCAGTCAGTCTGG 59.965 60.000 0.00 0.00 43.76 3.86
588 589 0.759346 GGGTTGTCAGTCAGTCTGGT 59.241 55.000 0.00 0.00 43.76 4.00
589 590 1.270358 GGGTTGTCAGTCAGTCTGGTC 60.270 57.143 0.00 0.00 43.76 4.02
590 591 1.412710 GGTTGTCAGTCAGTCTGGTCA 59.587 52.381 0.00 0.00 43.76 4.02
591 592 2.037772 GGTTGTCAGTCAGTCTGGTCAT 59.962 50.000 0.00 0.00 43.76 3.06
592 593 3.495100 GGTTGTCAGTCAGTCTGGTCATT 60.495 47.826 0.00 0.00 43.76 2.57
593 594 4.130118 GTTGTCAGTCAGTCTGGTCATTT 58.870 43.478 0.00 0.00 43.76 2.32
594 595 3.732212 TGTCAGTCAGTCTGGTCATTTG 58.268 45.455 0.00 0.00 43.76 2.32
595 596 3.070018 GTCAGTCAGTCTGGTCATTTGG 58.930 50.000 0.00 0.00 43.76 3.28
596 597 2.038952 TCAGTCAGTCTGGTCATTTGGG 59.961 50.000 0.00 0.00 43.76 4.12
597 598 1.168714 GTCAGTCTGGTCATTTGGGC 58.831 55.000 0.00 0.00 0.00 5.36
598 599 0.038166 TCAGTCTGGTCATTTGGGCC 59.962 55.000 0.00 0.00 0.00 5.80
599 600 1.002134 AGTCTGGTCATTTGGGCCG 60.002 57.895 0.00 0.00 0.00 6.13
600 601 2.046285 GTCTGGTCATTTGGGCCGG 61.046 63.158 0.00 0.00 0.00 6.13
601 602 2.227757 TCTGGTCATTTGGGCCGGA 61.228 57.895 5.05 0.00 35.49 5.14
602 603 1.076777 CTGGTCATTTGGGCCGGAT 60.077 57.895 5.05 0.00 0.00 4.18
603 604 0.684153 CTGGTCATTTGGGCCGGATT 60.684 55.000 5.05 0.00 0.00 3.01
604 605 0.252012 TGGTCATTTGGGCCGGATTT 60.252 50.000 5.05 0.00 0.00 2.17
605 606 1.006043 TGGTCATTTGGGCCGGATTTA 59.994 47.619 5.05 0.00 0.00 1.40
606 607 1.407618 GGTCATTTGGGCCGGATTTAC 59.592 52.381 5.05 0.00 0.00 2.01
607 608 1.407618 GTCATTTGGGCCGGATTTACC 59.592 52.381 5.05 0.00 0.00 2.85
608 609 1.006043 TCATTTGGGCCGGATTTACCA 59.994 47.619 5.05 1.24 38.90 3.25
609 610 2.038659 CATTTGGGCCGGATTTACCAT 58.961 47.619 5.05 0.00 38.90 3.55
610 611 1.479709 TTTGGGCCGGATTTACCATG 58.520 50.000 5.05 0.00 38.90 3.66
611 612 0.333312 TTGGGCCGGATTTACCATGT 59.667 50.000 5.05 0.00 38.90 3.21
612 613 0.333312 TGGGCCGGATTTACCATGTT 59.667 50.000 5.05 0.00 38.90 2.71
613 614 0.744281 GGGCCGGATTTACCATGTTG 59.256 55.000 5.05 0.00 38.90 3.33
614 615 0.744281 GGCCGGATTTACCATGTTGG 59.256 55.000 5.05 0.00 45.02 3.77
615 616 0.744281 GCCGGATTTACCATGTTGGG 59.256 55.000 5.05 0.00 43.37 4.12
616 617 1.958069 GCCGGATTTACCATGTTGGGT 60.958 52.381 5.05 0.00 43.37 4.51
617 618 2.452505 CCGGATTTACCATGTTGGGTT 58.547 47.619 0.00 0.00 43.37 4.11
618 619 2.165437 CCGGATTTACCATGTTGGGTTG 59.835 50.000 0.00 0.00 43.37 3.77
619 620 2.165437 CGGATTTACCATGTTGGGTTGG 59.835 50.000 0.00 0.00 43.37 3.77
620 621 2.499693 GGATTTACCATGTTGGGTTGGG 59.500 50.000 0.00 0.00 43.37 4.12
621 622 2.777459 TTTACCATGTTGGGTTGGGT 57.223 45.000 0.00 0.00 43.37 4.51
622 623 2.002505 TTACCATGTTGGGTTGGGTG 57.997 50.000 0.00 0.00 43.37 4.61
623 624 0.540830 TACCATGTTGGGTTGGGTGC 60.541 55.000 0.00 0.00 43.37 5.01
624 625 1.533753 CCATGTTGGGTTGGGTGCT 60.534 57.895 0.00 0.00 32.67 4.40
625 626 1.667151 CATGTTGGGTTGGGTGCTG 59.333 57.895 0.00 0.00 0.00 4.41
626 627 1.114722 CATGTTGGGTTGGGTGCTGT 61.115 55.000 0.00 0.00 0.00 4.40
627 628 0.398381 ATGTTGGGTTGGGTGCTGTT 60.398 50.000 0.00 0.00 0.00 3.16
628 629 0.616111 TGTTGGGTTGGGTGCTGTTT 60.616 50.000 0.00 0.00 0.00 2.83
629 630 0.539518 GTTGGGTTGGGTGCTGTTTT 59.460 50.000 0.00 0.00 0.00 2.43
630 631 1.757699 GTTGGGTTGGGTGCTGTTTTA 59.242 47.619 0.00 0.00 0.00 1.52
631 632 1.404843 TGGGTTGGGTGCTGTTTTAC 58.595 50.000 0.00 0.00 0.00 2.01
632 633 1.342076 TGGGTTGGGTGCTGTTTTACA 60.342 47.619 0.00 0.00 0.00 2.41
644 645 3.000727 CTGTTTTACAGTCCGGACATCC 58.999 50.000 35.00 15.66 41.19 3.51
645 646 2.289819 TGTTTTACAGTCCGGACATCCC 60.290 50.000 35.00 16.17 0.00 3.85
646 647 1.646912 TTTACAGTCCGGACATCCCA 58.353 50.000 35.00 14.07 34.14 4.37
647 648 0.899720 TTACAGTCCGGACATCCCAC 59.100 55.000 35.00 8.33 34.14 4.61
648 649 0.040646 TACAGTCCGGACATCCCACT 59.959 55.000 35.00 11.05 34.14 4.00
649 650 0.836400 ACAGTCCGGACATCCCACTT 60.836 55.000 35.00 10.24 34.14 3.16
650 651 1.191535 CAGTCCGGACATCCCACTTA 58.808 55.000 35.00 0.00 34.14 2.24
651 652 1.762957 CAGTCCGGACATCCCACTTAT 59.237 52.381 35.00 8.65 34.14 1.73
652 653 2.170607 CAGTCCGGACATCCCACTTATT 59.829 50.000 35.00 8.09 34.14 1.40
653 654 2.434702 AGTCCGGACATCCCACTTATTC 59.565 50.000 35.00 3.97 34.14 1.75
654 655 1.411246 TCCGGACATCCCACTTATTCG 59.589 52.381 0.00 0.00 34.14 3.34
655 656 1.138266 CCGGACATCCCACTTATTCGT 59.862 52.381 0.00 0.00 34.14 3.85
656 657 2.419574 CCGGACATCCCACTTATTCGTT 60.420 50.000 0.00 0.00 34.14 3.85
657 658 3.267483 CGGACATCCCACTTATTCGTTT 58.733 45.455 0.00 0.00 34.14 3.60
658 659 3.063452 CGGACATCCCACTTATTCGTTTG 59.937 47.826 0.00 0.00 34.14 2.93
659 660 3.377172 GGACATCCCACTTATTCGTTTGG 59.623 47.826 0.00 0.00 34.14 3.28
662 663 2.500392 CCCACTTATTCGTTTGGGGA 57.500 50.000 0.00 0.00 44.54 4.81
663 664 2.797786 CCCACTTATTCGTTTGGGGAA 58.202 47.619 0.00 0.00 44.54 3.97
664 665 2.752903 CCCACTTATTCGTTTGGGGAAG 59.247 50.000 0.00 0.00 44.54 3.46
665 666 3.560453 CCCACTTATTCGTTTGGGGAAGA 60.560 47.826 0.00 0.00 44.54 2.87
666 667 4.270008 CCACTTATTCGTTTGGGGAAGAT 58.730 43.478 0.00 0.00 0.00 2.40
667 668 4.705023 CCACTTATTCGTTTGGGGAAGATT 59.295 41.667 0.00 0.00 0.00 2.40
668 669 5.185056 CCACTTATTCGTTTGGGGAAGATTT 59.815 40.000 0.00 0.00 0.00 2.17
669 670 6.092748 CACTTATTCGTTTGGGGAAGATTTG 58.907 40.000 0.00 0.00 0.00 2.32
670 671 5.185056 ACTTATTCGTTTGGGGAAGATTTGG 59.815 40.000 0.00 0.00 0.00 3.28
671 672 1.917872 TCGTTTGGGGAAGATTTGGG 58.082 50.000 0.00 0.00 0.00 4.12
672 673 1.146152 TCGTTTGGGGAAGATTTGGGT 59.854 47.619 0.00 0.00 0.00 4.51
673 674 1.272212 CGTTTGGGGAAGATTTGGGTG 59.728 52.381 0.00 0.00 0.00 4.61
674 675 1.623311 GTTTGGGGAAGATTTGGGTGG 59.377 52.381 0.00 0.00 0.00 4.61
675 676 0.863956 TTGGGGAAGATTTGGGTGGT 59.136 50.000 0.00 0.00 0.00 4.16
676 677 0.407918 TGGGGAAGATTTGGGTGGTC 59.592 55.000 0.00 0.00 0.00 4.02
677 678 0.324368 GGGGAAGATTTGGGTGGTCC 60.324 60.000 0.00 0.00 0.00 4.46
678 679 0.679960 GGGAAGATTTGGGTGGTCCG 60.680 60.000 0.00 0.00 38.76 4.79
679 680 0.037734 GGAAGATTTGGGTGGTCCGT 59.962 55.000 0.00 0.00 38.76 4.69
680 681 1.165270 GAAGATTTGGGTGGTCCGTG 58.835 55.000 0.00 0.00 38.76 4.94
681 682 0.251165 AAGATTTGGGTGGTCCGTGG 60.251 55.000 0.00 0.00 38.76 4.94
682 683 1.074248 GATTTGGGTGGTCCGTGGT 59.926 57.895 0.00 0.00 38.76 4.16
683 684 0.325602 GATTTGGGTGGTCCGTGGTA 59.674 55.000 0.00 0.00 38.76 3.25
684 685 0.326927 ATTTGGGTGGTCCGTGGTAG 59.673 55.000 0.00 0.00 38.76 3.18
685 686 0.763604 TTTGGGTGGTCCGTGGTAGA 60.764 55.000 0.00 0.00 38.76 2.59
686 687 0.545787 TTGGGTGGTCCGTGGTAGAT 60.546 55.000 0.00 0.00 38.76 1.98
687 688 1.261938 TGGGTGGTCCGTGGTAGATG 61.262 60.000 0.00 0.00 38.76 2.90
688 689 1.153429 GGTGGTCCGTGGTAGATGC 60.153 63.158 0.00 0.00 0.00 3.91
689 690 1.614241 GGTGGTCCGTGGTAGATGCT 61.614 60.000 0.00 0.00 0.00 3.79
690 691 0.179108 GTGGTCCGTGGTAGATGCTC 60.179 60.000 0.00 0.00 0.00 4.26
691 692 1.327690 TGGTCCGTGGTAGATGCTCC 61.328 60.000 0.00 0.00 0.00 4.70
701 702 0.175760 TAGATGCTCCAACCACTCGC 59.824 55.000 0.00 0.00 0.00 5.03
705 706 3.059982 CTCCAACCACTCGCAGGA 58.940 61.111 0.00 0.00 0.00 3.86
710 711 1.069765 AACCACTCGCAGGACACAG 59.930 57.895 0.00 0.00 0.00 3.66
713 714 2.029666 ACTCGCAGGACACAGCAC 59.970 61.111 0.00 0.00 0.00 4.40
739 761 3.818787 GCCAGATGCTTGTGCCCG 61.819 66.667 0.00 0.00 38.71 6.13
754 776 1.301623 CCCGTGCCCCAACTATTCA 59.698 57.895 0.00 0.00 0.00 2.57
755 777 0.106719 CCCGTGCCCCAACTATTCAT 60.107 55.000 0.00 0.00 0.00 2.57
756 778 1.308998 CCGTGCCCCAACTATTCATC 58.691 55.000 0.00 0.00 0.00 2.92
757 779 1.408127 CCGTGCCCCAACTATTCATCA 60.408 52.381 0.00 0.00 0.00 3.07
758 780 2.364632 CGTGCCCCAACTATTCATCAA 58.635 47.619 0.00 0.00 0.00 2.57
759 781 2.752354 CGTGCCCCAACTATTCATCAAA 59.248 45.455 0.00 0.00 0.00 2.69
760 782 3.427503 CGTGCCCCAACTATTCATCAAAC 60.428 47.826 0.00 0.00 0.00 2.93
761 783 3.763897 GTGCCCCAACTATTCATCAAACT 59.236 43.478 0.00 0.00 0.00 2.66
762 784 4.947388 GTGCCCCAACTATTCATCAAACTA 59.053 41.667 0.00 0.00 0.00 2.24
763 785 4.947388 TGCCCCAACTATTCATCAAACTAC 59.053 41.667 0.00 0.00 0.00 2.73
764 786 4.338400 GCCCCAACTATTCATCAAACTACC 59.662 45.833 0.00 0.00 0.00 3.18
765 787 5.755849 CCCCAACTATTCATCAAACTACCT 58.244 41.667 0.00 0.00 0.00 3.08
766 788 6.634039 GCCCCAACTATTCATCAAACTACCTA 60.634 42.308 0.00 0.00 0.00 3.08
769 791 9.238368 CCCAACTATTCATCAAACTACCTAAAA 57.762 33.333 0.00 0.00 0.00 1.52
877 907 0.242286 CGCCATCTCCTACTCCATCG 59.758 60.000 0.00 0.00 0.00 3.84
930 966 0.248990 CACACCATGCACAACCACAC 60.249 55.000 0.00 0.00 0.00 3.82
931 967 0.682532 ACACCATGCACAACCACACA 60.683 50.000 0.00 0.00 0.00 3.72
932 968 0.031043 CACCATGCACAACCACACAG 59.969 55.000 0.00 0.00 0.00 3.66
933 969 1.108727 ACCATGCACAACCACACAGG 61.109 55.000 0.00 0.00 45.67 4.00
972 1008 2.350197 GCAGCAAGCACACAAGTAAGAG 60.350 50.000 0.00 0.00 44.79 2.85
977 1013 3.113260 AGCACACAAGTAAGAGACACC 57.887 47.619 0.00 0.00 0.00 4.16
989 1027 2.108168 AGAGACACCATAAGCCGCTAA 58.892 47.619 0.00 0.00 0.00 3.09
1014 1052 1.377725 AGCCATGAAGTTCCTGCCG 60.378 57.895 0.00 0.00 0.00 5.69
1273 1311 2.746277 CCGGTAGCGGCAAAGCTT 60.746 61.111 21.93 0.00 46.80 3.74
1389 1439 3.048602 CTGGAGGTGTTCGACGGT 58.951 61.111 0.00 0.00 0.00 4.83
1734 1784 4.547367 GGCTTGGGCGACGGCTAT 62.547 66.667 21.48 0.00 39.81 2.97
1735 1785 3.272334 GCTTGGGCGACGGCTATG 61.272 66.667 21.48 17.71 39.81 2.23
1736 1786 2.588877 CTTGGGCGACGGCTATGG 60.589 66.667 21.48 7.54 39.81 2.74
1737 1787 3.385749 CTTGGGCGACGGCTATGGT 62.386 63.158 21.48 0.00 39.81 3.55
1738 1788 2.023414 CTTGGGCGACGGCTATGGTA 62.023 60.000 21.48 0.00 39.81 3.25
1739 1789 1.404479 TTGGGCGACGGCTATGGTAT 61.404 55.000 21.48 0.00 39.81 2.73
1740 1790 1.370064 GGGCGACGGCTATGGTATT 59.630 57.895 21.48 0.00 39.81 1.89
1741 1791 0.949105 GGGCGACGGCTATGGTATTG 60.949 60.000 21.48 0.00 39.81 1.90
1742 1792 1.566018 GGCGACGGCTATGGTATTGC 61.566 60.000 15.00 0.00 39.81 3.56
1743 1793 0.878523 GCGACGGCTATGGTATTGCA 60.879 55.000 0.00 0.00 35.83 4.08
1744 1794 0.859232 CGACGGCTATGGTATTGCAC 59.141 55.000 0.00 0.00 32.56 4.57
1753 1803 3.876198 GTATTGCACCGGCGGCAG 61.876 66.667 28.71 20.47 45.35 4.85
1765 1815 3.522731 CGGCAGGAGGAGTCGGAG 61.523 72.222 0.00 0.00 0.00 4.63
1766 1816 3.151022 GGCAGGAGGAGTCGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
1767 1817 2.363147 GCAGGAGGAGTCGGAGGT 60.363 66.667 0.00 0.00 0.00 3.85
1768 1818 2.716017 GCAGGAGGAGTCGGAGGTG 61.716 68.421 0.00 0.00 0.00 4.00
1769 1819 1.304547 CAGGAGGAGTCGGAGGTGT 60.305 63.158 0.00 0.00 0.00 4.16
1770 1820 0.900647 CAGGAGGAGTCGGAGGTGTT 60.901 60.000 0.00 0.00 0.00 3.32
1771 1821 0.900647 AGGAGGAGTCGGAGGTGTTG 60.901 60.000 0.00 0.00 0.00 3.33
1772 1822 1.079750 GAGGAGTCGGAGGTGTTGC 60.080 63.158 0.00 0.00 0.00 4.17
1773 1823 2.047179 GGAGTCGGAGGTGTTGCC 60.047 66.667 0.00 0.00 37.58 4.52
1774 1824 2.047179 GAGTCGGAGGTGTTGCCC 60.047 66.667 0.00 0.00 38.26 5.36
1775 1825 3.607370 GAGTCGGAGGTGTTGCCCC 62.607 68.421 0.00 0.00 38.26 5.80
1776 1826 3.948719 GTCGGAGGTGTTGCCCCA 61.949 66.667 0.00 0.00 38.26 4.96
1777 1827 3.636231 TCGGAGGTGTTGCCCCAG 61.636 66.667 0.00 0.00 38.26 4.45
1778 1828 4.722700 CGGAGGTGTTGCCCCAGG 62.723 72.222 0.00 0.00 38.26 4.45
1779 1829 4.366684 GGAGGTGTTGCCCCAGGG 62.367 72.222 0.00 0.00 38.26 4.45
2135 2288 2.904866 GCCGCTGGTGGACAACAA 60.905 61.111 4.18 0.00 0.00 2.83
2231 2387 1.301623 CCATGGCCGTGGGTTTCTA 59.698 57.895 33.41 0.00 35.55 2.10
2287 2453 0.496851 CGCGTGCGTTTTTCTTTTCC 59.503 50.000 6.00 0.00 34.35 3.13
2288 2454 1.835121 GCGTGCGTTTTTCTTTTCCT 58.165 45.000 0.00 0.00 0.00 3.36
2289 2455 1.516864 GCGTGCGTTTTTCTTTTCCTG 59.483 47.619 0.00 0.00 0.00 3.86
2366 2539 7.744087 AGCTGTATTTGTGTGATTTGAGTAA 57.256 32.000 0.00 0.00 0.00 2.24
2408 2582 8.482128 TGAAAAATGGTTCTGTTCTAAATTGGT 58.518 29.630 0.00 0.00 0.00 3.67
2412 2586 4.226761 GGTTCTGTTCTAAATTGGTTGCG 58.773 43.478 0.00 0.00 0.00 4.85
2416 2590 2.239201 GTTCTAAATTGGTTGCGCGTC 58.761 47.619 8.43 0.00 0.00 5.19
2439 2626 6.197468 GTCGCTAGATAGAACTGTGATTCAAC 59.803 42.308 0.00 0.00 0.00 3.18
2440 2627 6.095580 TCGCTAGATAGAACTGTGATTCAACT 59.904 38.462 0.00 0.00 0.00 3.16
2441 2628 6.754209 CGCTAGATAGAACTGTGATTCAACTT 59.246 38.462 0.00 0.00 0.00 2.66
2442 2629 7.276658 CGCTAGATAGAACTGTGATTCAACTTT 59.723 37.037 0.00 0.00 0.00 2.66
2513 2701 9.074576 GGTTTAGTTACCCTATTTTATGGATGG 57.925 37.037 0.00 0.00 31.71 3.51
2514 2702 9.636789 GTTTAGTTACCCTATTTTATGGATGGT 57.363 33.333 0.00 0.00 0.00 3.55
2536 2726 9.916360 ATGGTATAATGATGCATATGATGTCTT 57.084 29.630 6.97 0.00 0.00 3.01
2586 2776 7.230466 CTTTTACTAAAAGTCAGACGTGTGT 57.770 36.000 12.92 0.00 42.23 3.72
2587 2777 7.599630 TTTTACTAAAAGTCAGACGTGTGTT 57.400 32.000 12.92 2.12 0.00 3.32
2588 2778 7.599630 TTTACTAAAAGTCAGACGTGTGTTT 57.400 32.000 12.92 8.58 0.00 2.83
2589 2779 7.599630 TTACTAAAAGTCAGACGTGTGTTTT 57.400 32.000 12.92 14.34 0.00 2.43
2590 2780 6.103222 ACTAAAAGTCAGACGTGTGTTTTC 57.897 37.500 12.92 2.75 0.00 2.29
2591 2781 5.640357 ACTAAAAGTCAGACGTGTGTTTTCA 59.360 36.000 12.92 1.05 0.00 2.69
2592 2782 5.365403 AAAAGTCAGACGTGTGTTTTCAA 57.635 34.783 12.92 0.00 0.00 2.69
2593 2783 5.560966 AAAGTCAGACGTGTGTTTTCAAT 57.439 34.783 12.92 0.00 0.00 2.57
2594 2784 5.560966 AAGTCAGACGTGTGTTTTCAATT 57.439 34.783 12.92 0.00 0.00 2.32
2595 2785 5.560966 AGTCAGACGTGTGTTTTCAATTT 57.439 34.783 12.92 0.00 0.00 1.82
2596 2786 5.331902 AGTCAGACGTGTGTTTTCAATTTG 58.668 37.500 12.92 0.00 0.00 2.32
2597 2787 4.499040 GTCAGACGTGTGTTTTCAATTTGG 59.501 41.667 12.92 0.00 0.00 3.28
2598 2788 4.156922 TCAGACGTGTGTTTTCAATTTGGT 59.843 37.500 12.92 0.00 0.00 3.67
2599 2789 4.862018 CAGACGTGTGTTTTCAATTTGGTT 59.138 37.500 4.19 0.00 0.00 3.67
2600 2790 5.347364 CAGACGTGTGTTTTCAATTTGGTTT 59.653 36.000 4.19 0.00 0.00 3.27
2601 2791 5.575218 AGACGTGTGTTTTCAATTTGGTTTC 59.425 36.000 0.00 0.00 0.00 2.78
2602 2792 5.230942 ACGTGTGTTTTCAATTTGGTTTCA 58.769 33.333 0.00 0.00 0.00 2.69
2603 2793 5.347364 ACGTGTGTTTTCAATTTGGTTTCAG 59.653 36.000 0.00 0.00 0.00 3.02
2604 2794 5.220378 CGTGTGTTTTCAATTTGGTTTCAGG 60.220 40.000 0.00 0.00 0.00 3.86
2605 2795 5.641636 GTGTGTTTTCAATTTGGTTTCAGGT 59.358 36.000 0.00 0.00 0.00 4.00
2606 2796 5.872070 TGTGTTTTCAATTTGGTTTCAGGTC 59.128 36.000 0.00 0.00 0.00 3.85
2607 2797 5.005299 GTGTTTTCAATTTGGTTTCAGGTCG 59.995 40.000 0.00 0.00 0.00 4.79
2608 2798 4.314740 TTTCAATTTGGTTTCAGGTCGG 57.685 40.909 0.00 0.00 0.00 4.79
2609 2799 2.235016 TCAATTTGGTTTCAGGTCGGG 58.765 47.619 0.00 0.00 0.00 5.14
2610 2800 1.960689 CAATTTGGTTTCAGGTCGGGT 59.039 47.619 0.00 0.00 0.00 5.28
2611 2801 2.364002 CAATTTGGTTTCAGGTCGGGTT 59.636 45.455 0.00 0.00 0.00 4.11
2612 2802 2.146920 TTTGGTTTCAGGTCGGGTTT 57.853 45.000 0.00 0.00 0.00 3.27
2613 2803 2.146920 TTGGTTTCAGGTCGGGTTTT 57.853 45.000 0.00 0.00 0.00 2.43
2614 2804 2.146920 TGGTTTCAGGTCGGGTTTTT 57.853 45.000 0.00 0.00 0.00 1.94
2635 2825 4.735662 TTTGGTCGTCCTATTTTGTTCG 57.264 40.909 0.00 0.00 34.23 3.95
2636 2826 2.690786 TGGTCGTCCTATTTTGTTCGG 58.309 47.619 0.00 0.00 34.23 4.30
2637 2827 2.299582 TGGTCGTCCTATTTTGTTCGGA 59.700 45.455 0.00 0.00 34.23 4.55
2638 2828 2.928116 GGTCGTCCTATTTTGTTCGGAG 59.072 50.000 0.00 0.00 0.00 4.63
2639 2829 3.367703 GGTCGTCCTATTTTGTTCGGAGA 60.368 47.826 0.00 0.00 0.00 3.71
2640 2830 4.430908 GTCGTCCTATTTTGTTCGGAGAT 58.569 43.478 0.00 0.00 35.04 2.75
2641 2831 4.503370 GTCGTCCTATTTTGTTCGGAGATC 59.497 45.833 0.00 0.00 35.04 2.75
2642 2832 3.802685 CGTCCTATTTTGTTCGGAGATCC 59.197 47.826 0.00 0.00 35.04 3.36
2652 2842 3.752704 GGAGATCCGCGCTAGTCT 58.247 61.111 5.56 5.34 0.00 3.24
2653 2843 1.284408 GGAGATCCGCGCTAGTCTG 59.716 63.158 5.56 0.00 0.00 3.51
2654 2844 1.284408 GAGATCCGCGCTAGTCTGG 59.716 63.158 5.56 0.00 0.00 3.86
2655 2845 2.136196 GAGATCCGCGCTAGTCTGGG 62.136 65.000 5.56 0.00 0.00 4.45
2656 2846 3.850095 GATCCGCGCTAGTCTGGGC 62.850 68.421 5.56 0.00 41.60 5.36
2664 2854 2.317530 GCTAGTCTGGGCGATCTTTT 57.682 50.000 0.00 0.00 0.00 2.27
2665 2855 2.205911 GCTAGTCTGGGCGATCTTTTC 58.794 52.381 0.00 0.00 0.00 2.29
2673 2863 3.102097 CGATCTTTTCGGGCTGGC 58.898 61.111 0.00 0.00 44.28 4.85
2674 2864 1.450312 CGATCTTTTCGGGCTGGCT 60.450 57.895 0.00 0.00 44.28 4.75
2675 2865 1.026718 CGATCTTTTCGGGCTGGCTT 61.027 55.000 0.00 0.00 44.28 4.35
2676 2866 1.177401 GATCTTTTCGGGCTGGCTTT 58.823 50.000 0.00 0.00 0.00 3.51
2710 2902 3.442977 TCTCTAGCAGACGGTAAAAGTCC 59.557 47.826 0.00 0.00 39.31 3.85
2745 2937 3.747193 CGTTTACAATTCGCTGCAGATT 58.253 40.909 20.43 5.51 0.00 2.40
2778 2970 0.930310 GAATTCGTGCGCTGCAGATA 59.070 50.000 20.43 0.00 40.08 1.98
2847 3047 4.552767 CGAGAGAAACTTGCAACGACATTT 60.553 41.667 0.00 0.00 0.00 2.32
2977 3183 2.612672 GCCTAGGCTACAAAAATCGACC 59.387 50.000 27.17 0.00 38.26 4.79
3032 3238 1.107114 GAGCTCAGTCCTCATCGGAA 58.893 55.000 9.40 0.00 45.32 4.30
3061 3267 2.437897 CCAGACCTTGGCCTGCTT 59.562 61.111 3.32 0.00 40.87 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.215655 CGAGAAGCGGCGAATTAGGG 61.216 60.000 12.98 0.00 36.03 3.53
1 2 1.822250 GCGAGAAGCGGCGAATTAGG 61.822 60.000 12.98 0.00 41.29 2.69
12 13 0.179100 TGTCTGCATAGGCGAGAAGC 60.179 55.000 0.00 0.00 45.35 3.86
13 14 1.565305 GTGTCTGCATAGGCGAGAAG 58.435 55.000 0.00 0.00 45.35 2.85
14 15 0.179137 CGTGTCTGCATAGGCGAGAA 60.179 55.000 0.00 0.00 45.35 2.87
15 16 1.433471 CGTGTCTGCATAGGCGAGA 59.567 57.895 0.00 0.00 45.35 4.04
16 17 1.589993 CCGTGTCTGCATAGGCGAG 60.590 63.158 0.00 0.00 45.35 5.03
17 18 2.004808 CTCCGTGTCTGCATAGGCGA 62.005 60.000 0.00 0.00 45.35 5.54
18 19 1.589993 CTCCGTGTCTGCATAGGCG 60.590 63.158 0.00 0.00 45.35 5.52
19 20 1.227380 CCTCCGTGTCTGCATAGGC 60.227 63.158 0.00 0.00 41.68 3.93
20 21 1.443407 CCCTCCGTGTCTGCATAGG 59.557 63.158 0.00 0.00 0.00 2.57
21 22 1.227380 GCCCTCCGTGTCTGCATAG 60.227 63.158 0.00 0.00 0.00 2.23
22 23 1.264749 AAGCCCTCCGTGTCTGCATA 61.265 55.000 0.00 0.00 0.00 3.14
23 24 2.527951 GAAGCCCTCCGTGTCTGCAT 62.528 60.000 0.00 0.00 0.00 3.96
24 25 3.240134 GAAGCCCTCCGTGTCTGCA 62.240 63.158 0.00 0.00 0.00 4.41
25 26 2.435059 GAAGCCCTCCGTGTCTGC 60.435 66.667 0.00 0.00 0.00 4.26
26 27 2.266055 GGAAGCCCTCCGTGTCTG 59.734 66.667 0.00 0.00 33.37 3.51
36 37 2.273776 GCAGGAAGGAGGAAGCCC 59.726 66.667 0.00 0.00 0.00 5.19
37 38 2.273776 GGCAGGAAGGAGGAAGCC 59.726 66.667 0.00 0.00 34.71 4.35
38 39 1.931007 ATGGGCAGGAAGGAGGAAGC 61.931 60.000 0.00 0.00 0.00 3.86
39 40 0.106819 CATGGGCAGGAAGGAGGAAG 60.107 60.000 0.00 0.00 0.00 3.46
40 41 2.001803 CATGGGCAGGAAGGAGGAA 58.998 57.895 0.00 0.00 0.00 3.36
41 42 2.683465 GCATGGGCAGGAAGGAGGA 61.683 63.158 0.00 0.00 40.72 3.71
42 43 2.123982 GCATGGGCAGGAAGGAGG 60.124 66.667 0.00 0.00 40.72 4.30
43 44 2.123982 GGCATGGGCAGGAAGGAG 60.124 66.667 0.00 0.00 43.71 3.69
44 45 4.113815 CGGCATGGGCAGGAAGGA 62.114 66.667 0.00 0.00 43.71 3.36
54 55 3.112126 GAATCGCACACCGGCATGG 62.112 63.158 0.00 0.00 46.41 3.66
55 56 2.404789 GAATCGCACACCGGCATG 59.595 61.111 0.00 0.00 37.59 4.06
56 57 2.824041 GGAATCGCACACCGGCAT 60.824 61.111 0.00 0.00 37.59 4.40
75 76 3.043419 CCTGATAGACGGAGCCGG 58.957 66.667 14.07 0.00 44.69 6.13
76 77 2.336809 GCCTGATAGACGGAGCCG 59.663 66.667 7.48 7.48 46.03 5.52
77 78 1.476007 ATGGCCTGATAGACGGAGCC 61.476 60.000 3.32 0.00 39.76 4.70
78 79 0.037790 GATGGCCTGATAGACGGAGC 60.038 60.000 3.32 0.00 0.00 4.70
79 80 0.242286 CGATGGCCTGATAGACGGAG 59.758 60.000 3.32 0.00 0.00 4.63
80 81 0.179001 TCGATGGCCTGATAGACGGA 60.179 55.000 3.32 0.00 0.00 4.69
81 82 0.673985 TTCGATGGCCTGATAGACGG 59.326 55.000 3.32 0.00 0.00 4.79
82 83 1.932604 GCTTCGATGGCCTGATAGACG 60.933 57.143 3.32 0.00 0.00 4.18
83 84 1.606737 GGCTTCGATGGCCTGATAGAC 60.607 57.143 18.80 0.00 45.57 2.59
84 85 0.681733 GGCTTCGATGGCCTGATAGA 59.318 55.000 18.80 0.00 45.57 1.98
85 86 0.668706 CGGCTTCGATGGCCTGATAG 60.669 60.000 21.94 7.54 46.73 2.08
86 87 1.367471 CGGCTTCGATGGCCTGATA 59.633 57.895 21.94 0.00 46.73 2.15
87 88 2.109799 CGGCTTCGATGGCCTGAT 59.890 61.111 21.94 0.00 46.73 2.90
88 89 4.838152 GCGGCTTCGATGGCCTGA 62.838 66.667 21.94 0.00 46.73 3.86
89 90 4.845580 AGCGGCTTCGATGGCCTG 62.846 66.667 21.94 17.20 46.73 4.85
90 91 4.101448 AAGCGGCTTCGATGGCCT 62.101 61.111 21.94 15.54 46.73 5.19
91 92 3.577313 GAAGCGGCTTCGATGGCC 61.577 66.667 25.24 17.20 45.57 5.36
92 93 2.512515 AGAAGCGGCTTCGATGGC 60.513 61.111 30.68 14.09 44.34 4.40
93 94 2.817423 GCAGAAGCGGCTTCGATGG 61.817 63.158 30.68 22.95 44.34 3.51
94 95 2.705826 GCAGAAGCGGCTTCGATG 59.294 61.111 30.68 25.66 44.34 3.84
104 105 2.694760 CGGGCCTTGAAGCAGAAGC 61.695 63.158 0.84 0.00 42.56 3.86
105 106 2.694760 GCGGGCCTTGAAGCAGAAG 61.695 63.158 0.84 0.00 0.00 2.85
106 107 2.672996 GCGGGCCTTGAAGCAGAA 60.673 61.111 0.84 0.00 0.00 3.02
107 108 4.722700 GGCGGGCCTTGAAGCAGA 62.723 66.667 0.84 0.00 0.00 4.26
136 137 3.491652 GAGAAGGAAGCACGCGCC 61.492 66.667 5.73 0.00 39.83 6.53
137 138 3.843240 CGAGAAGGAAGCACGCGC 61.843 66.667 5.73 0.00 38.99 6.86
138 139 1.557443 AAACGAGAAGGAAGCACGCG 61.557 55.000 3.53 3.53 0.00 6.01
139 140 0.586802 AAAACGAGAAGGAAGCACGC 59.413 50.000 0.00 0.00 0.00 5.34
140 141 1.069906 CCAAAACGAGAAGGAAGCACG 60.070 52.381 0.00 0.00 0.00 5.34
141 142 1.335051 GCCAAAACGAGAAGGAAGCAC 60.335 52.381 0.00 0.00 0.00 4.40
142 143 0.951558 GCCAAAACGAGAAGGAAGCA 59.048 50.000 0.00 0.00 0.00 3.91
143 144 0.241213 GGCCAAAACGAGAAGGAAGC 59.759 55.000 0.00 0.00 0.00 3.86
144 145 1.266989 GTGGCCAAAACGAGAAGGAAG 59.733 52.381 7.24 0.00 0.00 3.46
145 146 1.314730 GTGGCCAAAACGAGAAGGAA 58.685 50.000 7.24 0.00 0.00 3.36
146 147 0.181587 TGTGGCCAAAACGAGAAGGA 59.818 50.000 7.24 0.00 0.00 3.36
147 148 1.028905 TTGTGGCCAAAACGAGAAGG 58.971 50.000 7.24 0.00 0.00 3.46
148 149 2.459934 GTTTGTGGCCAAAACGAGAAG 58.540 47.619 8.22 0.00 41.99 2.85
149 150 1.135333 GGTTTGTGGCCAAAACGAGAA 59.865 47.619 24.52 5.43 41.99 2.87
150 151 0.741915 GGTTTGTGGCCAAAACGAGA 59.258 50.000 24.52 5.75 41.99 4.04
151 152 3.266282 GGTTTGTGGCCAAAACGAG 57.734 52.632 24.52 0.00 41.99 4.18
154 155 1.139853 TCCATGGTTTGTGGCCAAAAC 59.860 47.619 23.98 23.98 46.41 2.43
155 156 1.415659 CTCCATGGTTTGTGGCCAAAA 59.584 47.619 7.24 5.20 41.99 2.44
156 157 1.047002 CTCCATGGTTTGTGGCCAAA 58.953 50.000 7.24 0.00 39.72 3.28
157 158 0.831288 CCTCCATGGTTTGTGGCCAA 60.831 55.000 7.24 0.00 39.72 4.52
158 159 1.228831 CCTCCATGGTTTGTGGCCA 60.229 57.895 12.58 0.00 40.68 5.36
159 160 2.649129 GCCTCCATGGTTTGTGGCC 61.649 63.158 12.58 0.00 37.19 5.36
160 161 2.973082 GCCTCCATGGTTTGTGGC 59.027 61.111 12.58 14.33 36.66 5.01
161 162 2.342650 CCGCCTCCATGGTTTGTGG 61.343 63.158 12.58 13.11 38.35 4.17
162 163 0.680921 ATCCGCCTCCATGGTTTGTG 60.681 55.000 12.58 7.95 38.35 3.33
163 164 0.916086 TATCCGCCTCCATGGTTTGT 59.084 50.000 12.58 0.00 38.35 2.83
164 165 1.881973 CATATCCGCCTCCATGGTTTG 59.118 52.381 12.58 2.53 38.35 2.93
165 166 1.774254 TCATATCCGCCTCCATGGTTT 59.226 47.619 12.58 0.00 38.35 3.27
166 167 1.072331 GTCATATCCGCCTCCATGGTT 59.928 52.381 12.58 0.00 38.35 3.67
167 168 0.687354 GTCATATCCGCCTCCATGGT 59.313 55.000 12.58 0.00 38.35 3.55
168 169 0.036010 GGTCATATCCGCCTCCATGG 60.036 60.000 4.97 4.97 39.35 3.66
169 170 0.979665 AGGTCATATCCGCCTCCATG 59.020 55.000 0.00 0.00 0.00 3.66
170 171 1.270907 GAGGTCATATCCGCCTCCAT 58.729 55.000 0.00 0.00 42.09 3.41
171 172 2.746697 GAGGTCATATCCGCCTCCA 58.253 57.895 0.00 0.00 42.09 3.86
202 203 4.227134 CTCATCCCCGTGGCCTCG 62.227 72.222 20.08 20.08 0.00 4.63
203 204 2.764128 TCTCATCCCCGTGGCCTC 60.764 66.667 3.32 0.00 0.00 4.70
204 205 3.083997 GTCTCATCCCCGTGGCCT 61.084 66.667 3.32 0.00 0.00 5.19
205 206 4.530857 CGTCTCATCCCCGTGGCC 62.531 72.222 0.00 0.00 0.00 5.36
207 208 4.530857 GGCGTCTCATCCCCGTGG 62.531 72.222 0.00 0.00 0.00 4.94
208 209 3.770040 TGGCGTCTCATCCCCGTG 61.770 66.667 0.00 0.00 0.00 4.94
209 210 3.771160 GTGGCGTCTCATCCCCGT 61.771 66.667 0.00 0.00 0.00 5.28
210 211 4.530857 GGTGGCGTCTCATCCCCG 62.531 72.222 0.00 0.00 0.00 5.73
211 212 1.335132 TTAGGTGGCGTCTCATCCCC 61.335 60.000 0.00 0.00 0.00 4.81
212 213 0.539986 TTTAGGTGGCGTCTCATCCC 59.460 55.000 0.00 0.00 0.00 3.85
213 214 1.653151 GTTTAGGTGGCGTCTCATCC 58.347 55.000 0.00 0.00 0.00 3.51
214 215 1.278238 CGTTTAGGTGGCGTCTCATC 58.722 55.000 0.00 0.00 0.00 2.92
215 216 0.108329 CCGTTTAGGTGGCGTCTCAT 60.108 55.000 0.00 0.00 34.51 2.90
216 217 1.290955 CCGTTTAGGTGGCGTCTCA 59.709 57.895 0.00 0.00 34.51 3.27
217 218 4.180496 CCGTTTAGGTGGCGTCTC 57.820 61.111 0.00 0.00 34.51 3.36
532 533 1.761198 GTGGGGCGGATATAGGGATAC 59.239 57.143 0.00 0.00 0.00 2.24
533 534 1.363280 TGTGGGGCGGATATAGGGATA 59.637 52.381 0.00 0.00 0.00 2.59
534 535 0.118346 TGTGGGGCGGATATAGGGAT 59.882 55.000 0.00 0.00 0.00 3.85
535 536 0.118346 ATGTGGGGCGGATATAGGGA 59.882 55.000 0.00 0.00 0.00 4.20
536 537 1.874129 TATGTGGGGCGGATATAGGG 58.126 55.000 0.00 0.00 0.00 3.53
537 538 3.038280 TCATATGTGGGGCGGATATAGG 58.962 50.000 1.90 0.00 0.00 2.57
538 539 3.493350 GCTCATATGTGGGGCGGATATAG 60.493 52.174 1.90 0.00 0.00 1.31
539 540 2.434336 GCTCATATGTGGGGCGGATATA 59.566 50.000 1.90 0.00 0.00 0.86
540 541 1.210478 GCTCATATGTGGGGCGGATAT 59.790 52.381 1.90 0.00 0.00 1.63
541 542 0.613260 GCTCATATGTGGGGCGGATA 59.387 55.000 1.90 0.00 0.00 2.59
542 543 1.130054 AGCTCATATGTGGGGCGGAT 61.130 55.000 1.90 0.00 32.60 4.18
543 544 0.471022 TAGCTCATATGTGGGGCGGA 60.471 55.000 1.90 0.00 32.60 5.54
544 545 0.036952 CTAGCTCATATGTGGGGCGG 60.037 60.000 1.90 0.30 32.60 6.13
545 546 0.969149 TCTAGCTCATATGTGGGGCG 59.031 55.000 1.90 0.00 32.60 6.13
546 547 4.444022 CCATATCTAGCTCATATGTGGGGC 60.444 50.000 18.06 3.97 33.84 5.80
547 548 4.102210 CCCATATCTAGCTCATATGTGGGG 59.898 50.000 21.03 13.45 44.25 4.96
548 549 4.102210 CCCCATATCTAGCTCATATGTGGG 59.898 50.000 21.49 21.49 46.32 4.61
549 550 4.718774 ACCCCATATCTAGCTCATATGTGG 59.281 45.833 18.28 18.28 37.61 4.17
550 551 5.946942 ACCCCATATCTAGCTCATATGTG 57.053 43.478 18.06 10.84 33.84 3.21
551 552 5.787494 ACAACCCCATATCTAGCTCATATGT 59.213 40.000 18.06 4.23 33.84 2.29
552 553 6.070596 TGACAACCCCATATCTAGCTCATATG 60.071 42.308 14.71 14.71 34.98 1.78
553 554 6.025539 TGACAACCCCATATCTAGCTCATAT 58.974 40.000 0.00 0.00 0.00 1.78
554 555 5.402630 TGACAACCCCATATCTAGCTCATA 58.597 41.667 0.00 0.00 0.00 2.15
555 556 4.234550 TGACAACCCCATATCTAGCTCAT 58.765 43.478 0.00 0.00 0.00 2.90
556 557 3.643320 CTGACAACCCCATATCTAGCTCA 59.357 47.826 0.00 0.00 0.00 4.26
557 558 3.643792 ACTGACAACCCCATATCTAGCTC 59.356 47.826 0.00 0.00 0.00 4.09
558 559 3.643792 GACTGACAACCCCATATCTAGCT 59.356 47.826 0.00 0.00 0.00 3.32
559 560 3.388024 TGACTGACAACCCCATATCTAGC 59.612 47.826 0.00 0.00 0.00 3.42
560 561 4.651503 ACTGACTGACAACCCCATATCTAG 59.348 45.833 0.00 0.00 0.00 2.43
561 562 4.620723 ACTGACTGACAACCCCATATCTA 58.379 43.478 0.00 0.00 0.00 1.98
562 563 3.452627 GACTGACTGACAACCCCATATCT 59.547 47.826 0.00 0.00 0.00 1.98
563 564 3.452627 AGACTGACTGACAACCCCATATC 59.547 47.826 0.00 0.00 0.00 1.63
564 565 3.454858 AGACTGACTGACAACCCCATAT 58.545 45.455 0.00 0.00 0.00 1.78
565 566 2.902608 AGACTGACTGACAACCCCATA 58.097 47.619 0.00 0.00 0.00 2.74
566 567 1.734655 AGACTGACTGACAACCCCAT 58.265 50.000 0.00 0.00 0.00 4.00
567 568 3.240670 AGACTGACTGACAACCCCA 57.759 52.632 0.00 0.00 0.00 4.96
576 577 2.430465 CCCAAATGACCAGACTGACTG 58.570 52.381 3.32 0.00 45.36 3.51
577 578 1.271597 GCCCAAATGACCAGACTGACT 60.272 52.381 3.32 0.00 0.00 3.41
578 579 1.168714 GCCCAAATGACCAGACTGAC 58.831 55.000 3.32 0.00 0.00 3.51
579 580 0.038166 GGCCCAAATGACCAGACTGA 59.962 55.000 3.32 0.00 0.00 3.41
580 581 1.308069 CGGCCCAAATGACCAGACTG 61.308 60.000 0.00 0.00 0.00 3.51
581 582 1.002134 CGGCCCAAATGACCAGACT 60.002 57.895 0.00 0.00 0.00 3.24
582 583 2.046285 CCGGCCCAAATGACCAGAC 61.046 63.158 0.00 0.00 0.00 3.51
583 584 1.570857 ATCCGGCCCAAATGACCAGA 61.571 55.000 0.00 0.00 0.00 3.86
584 585 0.684153 AATCCGGCCCAAATGACCAG 60.684 55.000 0.00 0.00 0.00 4.00
585 586 0.252012 AAATCCGGCCCAAATGACCA 60.252 50.000 0.00 0.00 0.00 4.02
586 587 1.407618 GTAAATCCGGCCCAAATGACC 59.592 52.381 0.00 0.00 0.00 4.02
587 588 1.407618 GGTAAATCCGGCCCAAATGAC 59.592 52.381 0.00 0.00 0.00 3.06
588 589 1.006043 TGGTAAATCCGGCCCAAATGA 59.994 47.619 0.00 0.00 39.52 2.57
589 590 1.479709 TGGTAAATCCGGCCCAAATG 58.520 50.000 0.00 0.00 39.52 2.32
590 591 2.038659 CATGGTAAATCCGGCCCAAAT 58.961 47.619 0.00 0.00 39.52 2.32
591 592 1.272760 ACATGGTAAATCCGGCCCAAA 60.273 47.619 0.00 0.00 39.52 3.28
592 593 0.333312 ACATGGTAAATCCGGCCCAA 59.667 50.000 0.00 0.00 39.52 4.12
593 594 0.333312 AACATGGTAAATCCGGCCCA 59.667 50.000 0.00 0.00 39.52 5.36
594 595 0.744281 CAACATGGTAAATCCGGCCC 59.256 55.000 0.00 0.00 39.52 5.80
595 596 0.744281 CCAACATGGTAAATCCGGCC 59.256 55.000 0.00 0.00 39.52 6.13
596 597 0.744281 CCCAACATGGTAAATCCGGC 59.256 55.000 0.00 0.00 39.52 6.13
597 598 2.137810 ACCCAACATGGTAAATCCGG 57.862 50.000 0.00 0.00 36.67 5.14
598 599 2.165437 CCAACCCAACATGGTAAATCCG 59.835 50.000 0.00 0.00 37.76 4.18
599 600 2.499693 CCCAACCCAACATGGTAAATCC 59.500 50.000 0.00 0.00 37.76 3.01
600 601 3.056179 CACCCAACCCAACATGGTAAATC 60.056 47.826 0.00 0.00 37.76 2.17
601 602 2.903135 CACCCAACCCAACATGGTAAAT 59.097 45.455 0.00 0.00 37.76 1.40
602 603 2.320781 CACCCAACCCAACATGGTAAA 58.679 47.619 0.00 0.00 37.76 2.01
603 604 2.002505 CACCCAACCCAACATGGTAA 57.997 50.000 0.00 0.00 37.76 2.85
604 605 0.540830 GCACCCAACCCAACATGGTA 60.541 55.000 0.00 0.00 37.76 3.25
605 606 1.836604 GCACCCAACCCAACATGGT 60.837 57.895 0.00 0.00 41.55 3.55
606 607 1.533753 AGCACCCAACCCAACATGG 60.534 57.895 0.00 0.00 37.25 3.66
607 608 1.114722 ACAGCACCCAACCCAACATG 61.115 55.000 0.00 0.00 0.00 3.21
608 609 0.398381 AACAGCACCCAACCCAACAT 60.398 50.000 0.00 0.00 0.00 2.71
609 610 0.616111 AAACAGCACCCAACCCAACA 60.616 50.000 0.00 0.00 0.00 3.33
610 611 0.539518 AAAACAGCACCCAACCCAAC 59.460 50.000 0.00 0.00 0.00 3.77
611 612 1.757699 GTAAAACAGCACCCAACCCAA 59.242 47.619 0.00 0.00 0.00 4.12
612 613 1.342076 TGTAAAACAGCACCCAACCCA 60.342 47.619 0.00 0.00 0.00 4.51
613 614 1.339929 CTGTAAAACAGCACCCAACCC 59.660 52.381 0.00 0.00 39.62 4.11
614 615 2.793278 CTGTAAAACAGCACCCAACC 57.207 50.000 0.00 0.00 39.62 3.77
623 624 4.173176 GGGATGTCCGGACTGTAAAACAG 61.173 52.174 33.39 5.53 43.81 3.16
624 625 2.289819 GGGATGTCCGGACTGTAAAACA 60.290 50.000 33.39 13.39 36.71 2.83
625 626 2.289819 TGGGATGTCCGGACTGTAAAAC 60.290 50.000 33.39 17.53 38.76 2.43
626 627 1.979308 TGGGATGTCCGGACTGTAAAA 59.021 47.619 33.39 14.29 38.76 1.52
627 628 1.276989 GTGGGATGTCCGGACTGTAAA 59.723 52.381 33.39 15.07 38.76 2.01
628 629 0.899720 GTGGGATGTCCGGACTGTAA 59.100 55.000 33.39 15.47 38.76 2.41
629 630 0.040646 AGTGGGATGTCCGGACTGTA 59.959 55.000 33.39 15.86 38.76 2.74
630 631 0.836400 AAGTGGGATGTCCGGACTGT 60.836 55.000 33.39 22.54 38.76 3.55
631 632 1.191535 TAAGTGGGATGTCCGGACTG 58.808 55.000 33.39 0.00 38.76 3.51
632 633 2.176247 ATAAGTGGGATGTCCGGACT 57.824 50.000 33.39 19.82 38.76 3.85
633 634 2.802057 CGAATAAGTGGGATGTCCGGAC 60.802 54.545 28.17 28.17 38.76 4.79
634 635 1.411246 CGAATAAGTGGGATGTCCGGA 59.589 52.381 0.00 0.00 38.76 5.14
635 636 1.138266 ACGAATAAGTGGGATGTCCGG 59.862 52.381 0.00 0.00 38.76 5.14
636 637 2.596904 ACGAATAAGTGGGATGTCCG 57.403 50.000 0.00 0.00 38.76 4.79
637 638 3.377172 CCAAACGAATAAGTGGGATGTCC 59.623 47.826 0.00 0.00 0.00 4.02
638 639 4.616181 CCAAACGAATAAGTGGGATGTC 57.384 45.455 0.00 0.00 0.00 3.06
644 645 3.681593 TCTTCCCCAAACGAATAAGTGG 58.318 45.455 0.00 0.00 0.00 4.00
645 646 5.897377 AATCTTCCCCAAACGAATAAGTG 57.103 39.130 0.00 0.00 0.00 3.16
646 647 5.185056 CCAAATCTTCCCCAAACGAATAAGT 59.815 40.000 0.00 0.00 0.00 2.24
647 648 5.394115 CCCAAATCTTCCCCAAACGAATAAG 60.394 44.000 0.00 0.00 0.00 1.73
648 649 4.464597 CCCAAATCTTCCCCAAACGAATAA 59.535 41.667 0.00 0.00 0.00 1.40
649 650 4.020543 CCCAAATCTTCCCCAAACGAATA 58.979 43.478 0.00 0.00 0.00 1.75
650 651 2.831526 CCCAAATCTTCCCCAAACGAAT 59.168 45.455 0.00 0.00 0.00 3.34
651 652 2.243810 CCCAAATCTTCCCCAAACGAA 58.756 47.619 0.00 0.00 0.00 3.85
652 653 1.146152 ACCCAAATCTTCCCCAAACGA 59.854 47.619 0.00 0.00 0.00 3.85
653 654 1.272212 CACCCAAATCTTCCCCAAACG 59.728 52.381 0.00 0.00 0.00 3.60
654 655 1.623311 CCACCCAAATCTTCCCCAAAC 59.377 52.381 0.00 0.00 0.00 2.93
655 656 1.221781 ACCACCCAAATCTTCCCCAAA 59.778 47.619 0.00 0.00 0.00 3.28
656 657 0.863956 ACCACCCAAATCTTCCCCAA 59.136 50.000 0.00 0.00 0.00 4.12
657 658 0.407918 GACCACCCAAATCTTCCCCA 59.592 55.000 0.00 0.00 0.00 4.96
658 659 0.324368 GGACCACCCAAATCTTCCCC 60.324 60.000 0.00 0.00 34.14 4.81
659 660 0.679960 CGGACCACCCAAATCTTCCC 60.680 60.000 0.00 0.00 34.14 3.97
660 661 0.037734 ACGGACCACCCAAATCTTCC 59.962 55.000 0.00 0.00 34.14 3.46
661 662 1.165270 CACGGACCACCCAAATCTTC 58.835 55.000 0.00 0.00 34.14 2.87
662 663 0.251165 CCACGGACCACCCAAATCTT 60.251 55.000 0.00 0.00 34.14 2.40
663 664 1.378762 CCACGGACCACCCAAATCT 59.621 57.895 0.00 0.00 34.14 2.40
664 665 0.325602 TACCACGGACCACCCAAATC 59.674 55.000 0.00 0.00 34.14 2.17
665 666 0.326927 CTACCACGGACCACCCAAAT 59.673 55.000 0.00 0.00 34.14 2.32
666 667 0.763604 TCTACCACGGACCACCCAAA 60.764 55.000 0.00 0.00 34.14 3.28
667 668 0.545787 ATCTACCACGGACCACCCAA 60.546 55.000 0.00 0.00 34.14 4.12
668 669 1.079621 ATCTACCACGGACCACCCA 59.920 57.895 0.00 0.00 34.14 4.51
669 670 1.520666 CATCTACCACGGACCACCC 59.479 63.158 0.00 0.00 0.00 4.61
670 671 1.153429 GCATCTACCACGGACCACC 60.153 63.158 0.00 0.00 0.00 4.61
671 672 0.179108 GAGCATCTACCACGGACCAC 60.179 60.000 0.00 0.00 0.00 4.16
672 673 1.327690 GGAGCATCTACCACGGACCA 61.328 60.000 0.00 0.00 33.73 4.02
673 674 1.327690 TGGAGCATCTACCACGGACC 61.328 60.000 0.00 0.00 33.73 4.46
674 675 0.535335 TTGGAGCATCTACCACGGAC 59.465 55.000 0.00 0.00 35.81 4.79
675 676 0.535335 GTTGGAGCATCTACCACGGA 59.465 55.000 0.00 0.00 35.81 4.69
676 677 0.462047 GGTTGGAGCATCTACCACGG 60.462 60.000 5.39 0.00 38.86 4.94
677 678 0.249120 TGGTTGGAGCATCTACCACG 59.751 55.000 8.11 0.00 42.09 4.94
679 680 1.555075 GAGTGGTTGGAGCATCTACCA 59.445 52.381 8.11 8.11 43.76 3.25
680 681 1.471676 CGAGTGGTTGGAGCATCTACC 60.472 57.143 3.71 3.71 39.26 3.18
681 682 1.927895 CGAGTGGTTGGAGCATCTAC 58.072 55.000 0.00 0.00 33.73 2.59
682 683 0.175760 GCGAGTGGTTGGAGCATCTA 59.824 55.000 0.00 0.00 33.73 1.98
683 684 1.078848 GCGAGTGGTTGGAGCATCT 60.079 57.895 0.00 0.00 33.73 2.90
684 685 1.364626 CTGCGAGTGGTTGGAGCATC 61.365 60.000 0.00 0.00 37.20 3.91
685 686 1.376424 CTGCGAGTGGTTGGAGCAT 60.376 57.895 0.00 0.00 37.20 3.79
686 687 2.031012 CTGCGAGTGGTTGGAGCA 59.969 61.111 0.00 0.00 36.34 4.26
687 688 2.743928 CCTGCGAGTGGTTGGAGC 60.744 66.667 0.00 0.00 0.00 4.70
688 689 1.374758 GTCCTGCGAGTGGTTGGAG 60.375 63.158 0.00 0.00 0.00 3.86
689 690 2.137528 TGTCCTGCGAGTGGTTGGA 61.138 57.895 0.00 0.00 0.00 3.53
690 691 1.961277 GTGTCCTGCGAGTGGTTGG 60.961 63.158 0.00 0.00 0.00 3.77
691 692 1.224069 CTGTGTCCTGCGAGTGGTTG 61.224 60.000 0.00 0.00 0.00 3.77
701 702 0.664761 CCACTTTGTGCTGTGTCCTG 59.335 55.000 0.00 0.00 32.76 3.86
705 706 1.103398 GGCTCCACTTTGTGCTGTGT 61.103 55.000 0.00 0.00 32.76 3.72
710 711 0.524862 CATCTGGCTCCACTTTGTGC 59.475 55.000 0.00 0.00 31.34 4.57
739 761 3.763897 AGTTTGATGAATAGTTGGGGCAC 59.236 43.478 0.00 0.00 0.00 5.01
754 776 4.459337 GCAGCTGGTTTTAGGTAGTTTGAT 59.541 41.667 17.12 0.00 0.00 2.57
755 777 3.818773 GCAGCTGGTTTTAGGTAGTTTGA 59.181 43.478 17.12 0.00 0.00 2.69
756 778 3.057526 GGCAGCTGGTTTTAGGTAGTTTG 60.058 47.826 17.12 0.00 0.00 2.93
757 779 3.154710 GGCAGCTGGTTTTAGGTAGTTT 58.845 45.455 17.12 0.00 0.00 2.66
758 780 2.375509 AGGCAGCTGGTTTTAGGTAGTT 59.624 45.455 17.12 0.00 0.00 2.24
759 781 1.985895 AGGCAGCTGGTTTTAGGTAGT 59.014 47.619 17.12 0.00 0.00 2.73
760 782 2.027192 TGAGGCAGCTGGTTTTAGGTAG 60.027 50.000 17.12 0.00 0.00 3.18
761 783 1.982226 TGAGGCAGCTGGTTTTAGGTA 59.018 47.619 17.12 0.00 0.00 3.08
762 784 0.771127 TGAGGCAGCTGGTTTTAGGT 59.229 50.000 17.12 0.00 0.00 3.08
763 785 1.168714 GTGAGGCAGCTGGTTTTAGG 58.831 55.000 17.12 0.00 0.00 2.69
764 786 1.168714 GGTGAGGCAGCTGGTTTTAG 58.831 55.000 17.12 0.00 0.00 1.85
765 787 0.476338 TGGTGAGGCAGCTGGTTTTA 59.524 50.000 17.12 0.00 32.61 1.52
766 788 1.109323 GTGGTGAGGCAGCTGGTTTT 61.109 55.000 17.12 0.00 32.61 2.43
769 791 2.851102 AGTGGTGAGGCAGCTGGT 60.851 61.111 17.12 0.00 32.61 4.00
877 907 3.006110 TGCGTACATATAGTTAGGGTGGC 59.994 47.826 0.00 0.00 0.00 5.01
933 969 1.560860 GCTGCTCTGTGGTTGTCGAC 61.561 60.000 9.11 9.11 0.00 4.20
934 970 1.300931 GCTGCTCTGTGGTTGTCGA 60.301 57.895 0.00 0.00 0.00 4.20
935 971 1.563435 CTGCTGCTCTGTGGTTGTCG 61.563 60.000 0.00 0.00 0.00 4.35
937 973 1.895707 GCTGCTGCTCTGTGGTTGT 60.896 57.895 8.53 0.00 36.03 3.32
938 974 1.449726 TTGCTGCTGCTCTGTGGTTG 61.450 55.000 17.00 0.00 40.48 3.77
972 1008 1.296727 GGTTAGCGGCTTATGGTGTC 58.703 55.000 8.26 0.00 0.00 3.67
989 1027 0.610232 GAACTTCATGGCTGGCTGGT 60.610 55.000 2.00 0.00 0.00 4.00
1014 1052 0.960286 GTAGGAGGACGGCTATGGAC 59.040 60.000 0.00 0.00 0.00 4.02
1389 1439 2.283604 TGCCACACCTCCTCGCTA 60.284 61.111 0.00 0.00 0.00 4.26
1736 1786 3.876198 CTGCCGCCGGTGCAATAC 61.876 66.667 19.16 3.33 38.46 1.89
1748 1798 3.522731 CTCCGACTCCTCCTGCCG 61.523 72.222 0.00 0.00 0.00 5.69
1749 1799 3.151022 CCTCCGACTCCTCCTGCC 61.151 72.222 0.00 0.00 0.00 4.85
1750 1800 2.363147 ACCTCCGACTCCTCCTGC 60.363 66.667 0.00 0.00 0.00 4.85
1751 1801 0.900647 AACACCTCCGACTCCTCCTG 60.901 60.000 0.00 0.00 0.00 3.86
1752 1802 0.900647 CAACACCTCCGACTCCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
1753 1803 1.592223 CAACACCTCCGACTCCTCC 59.408 63.158 0.00 0.00 0.00 4.30
1754 1804 1.079750 GCAACACCTCCGACTCCTC 60.080 63.158 0.00 0.00 0.00 3.71
1755 1805 2.584391 GGCAACACCTCCGACTCCT 61.584 63.158 0.00 0.00 34.51 3.69
1756 1806 2.047179 GGCAACACCTCCGACTCC 60.047 66.667 0.00 0.00 34.51 3.85
1757 1807 2.047179 GGGCAACACCTCCGACTC 60.047 66.667 0.00 0.00 39.10 3.36
1758 1808 3.637273 GGGGCAACACCTCCGACT 61.637 66.667 0.00 0.00 39.10 4.18
1759 1809 3.901797 CTGGGGCAACACCTCCGAC 62.902 68.421 0.00 0.00 42.17 4.79
1760 1810 3.636231 CTGGGGCAACACCTCCGA 61.636 66.667 0.00 0.00 42.17 4.55
1761 1811 4.722700 CCTGGGGCAACACCTCCG 62.723 72.222 0.00 0.00 42.17 4.63
1762 1812 4.366684 CCCTGGGGCAACACCTCC 62.367 72.222 4.27 0.00 42.17 4.30
1763 1813 4.366684 CCCCTGGGGCAACACCTC 62.367 72.222 21.20 0.00 42.17 3.85
1786 1836 4.547367 ATAGCCGTCGCCCAAGCC 62.547 66.667 0.00 0.00 34.57 4.35
1787 1837 3.272334 CATAGCCGTCGCCCAAGC 61.272 66.667 0.00 0.00 34.57 4.01
1788 1838 2.588877 CCATAGCCGTCGCCCAAG 60.589 66.667 0.00 0.00 34.57 3.61
1789 1839 4.849310 GCCATAGCCGTCGCCCAA 62.849 66.667 0.00 0.00 34.57 4.12
1791 1841 4.626081 ATGCCATAGCCGTCGCCC 62.626 66.667 0.00 0.00 38.69 6.13
1792 1842 2.591715 AATGCCATAGCCGTCGCC 60.592 61.111 0.00 0.00 38.69 5.54
1793 1843 2.633657 CAATGCCATAGCCGTCGC 59.366 61.111 0.00 0.00 38.69 5.19
1794 1844 2.179547 TGCAATGCCATAGCCGTCG 61.180 57.895 1.53 0.00 38.69 5.12
2231 2387 2.418746 CCACTGATTCGTCTTCCCGATT 60.419 50.000 0.00 0.00 36.62 3.34
2311 2481 2.156917 CACCACTCACAAGCACATCAT 58.843 47.619 0.00 0.00 0.00 2.45
2412 2586 2.031807 TCACAGTTCTATCTAGCGACGC 59.968 50.000 13.03 13.03 0.00 5.19
2416 2590 6.269315 AGTTGAATCACAGTTCTATCTAGCG 58.731 40.000 0.00 0.00 0.00 4.26
2420 2594 8.908786 TGAAAAGTTGAATCACAGTTCTATCT 57.091 30.769 0.00 0.00 0.00 1.98
2421 2595 9.950680 TTTGAAAAGTTGAATCACAGTTCTATC 57.049 29.630 0.00 0.00 0.00 2.08
2458 2645 5.837437 ACGGATGAACAAAGTGCAATTTAA 58.163 33.333 12.36 0.00 0.00 1.52
2461 2649 3.609175 CGACGGATGAACAAAGTGCAATT 60.609 43.478 0.00 0.00 0.00 2.32
2515 2703 9.734984 TCAAGAAGACATCATATGCATCATTAT 57.265 29.630 0.19 0.00 0.00 1.28
2516 2704 9.734984 ATCAAGAAGACATCATATGCATCATTA 57.265 29.630 0.19 0.00 0.00 1.90
2517 2705 8.637196 ATCAAGAAGACATCATATGCATCATT 57.363 30.769 0.19 0.00 0.00 2.57
2519 2707 7.450903 AGATCAAGAAGACATCATATGCATCA 58.549 34.615 0.19 0.00 0.00 3.07
2520 2708 7.908827 AGATCAAGAAGACATCATATGCATC 57.091 36.000 0.19 0.00 0.00 3.91
2521 2709 9.961264 ATTAGATCAAGAAGACATCATATGCAT 57.039 29.630 3.79 3.79 0.00 3.96
2563 2753 7.599630 AACACACGTCTGACTTTTAGTAAAA 57.400 32.000 7.80 7.80 0.00 1.52
2564 2754 7.599630 AAACACACGTCTGACTTTTAGTAAA 57.400 32.000 6.21 0.00 0.00 2.01
2565 2755 7.331440 TGAAAACACACGTCTGACTTTTAGTAA 59.669 33.333 6.21 0.00 0.00 2.24
2566 2756 6.812656 TGAAAACACACGTCTGACTTTTAGTA 59.187 34.615 6.21 0.00 0.00 1.82
2567 2757 5.640357 TGAAAACACACGTCTGACTTTTAGT 59.360 36.000 6.21 0.00 0.00 2.24
2568 2758 6.102006 TGAAAACACACGTCTGACTTTTAG 57.898 37.500 6.21 0.00 0.00 1.85
2569 2759 6.483385 TTGAAAACACACGTCTGACTTTTA 57.517 33.333 6.21 0.00 0.00 1.52
2570 2760 5.365403 TTGAAAACACACGTCTGACTTTT 57.635 34.783 6.21 5.45 0.00 2.27
2571 2761 5.560966 ATTGAAAACACACGTCTGACTTT 57.439 34.783 6.21 0.00 0.00 2.66
2572 2762 5.560966 AATTGAAAACACACGTCTGACTT 57.439 34.783 6.21 0.00 0.00 3.01
2573 2763 5.331902 CAAATTGAAAACACACGTCTGACT 58.668 37.500 6.21 0.00 0.00 3.41
2574 2764 4.499040 CCAAATTGAAAACACACGTCTGAC 59.501 41.667 0.00 0.00 0.00 3.51
2575 2765 4.156922 ACCAAATTGAAAACACACGTCTGA 59.843 37.500 0.00 0.00 0.00 3.27
2576 2766 4.420168 ACCAAATTGAAAACACACGTCTG 58.580 39.130 0.00 0.00 0.00 3.51
2577 2767 4.712122 ACCAAATTGAAAACACACGTCT 57.288 36.364 0.00 0.00 0.00 4.18
2578 2768 5.346281 TGAAACCAAATTGAAAACACACGTC 59.654 36.000 0.00 0.00 0.00 4.34
2579 2769 5.230942 TGAAACCAAATTGAAAACACACGT 58.769 33.333 0.00 0.00 0.00 4.49
2580 2770 5.220378 CCTGAAACCAAATTGAAAACACACG 60.220 40.000 0.00 0.00 0.00 4.49
2581 2771 5.641636 ACCTGAAACCAAATTGAAAACACAC 59.358 36.000 0.00 0.00 0.00 3.82
2582 2772 5.799213 ACCTGAAACCAAATTGAAAACACA 58.201 33.333 0.00 0.00 0.00 3.72
2583 2773 5.005299 CGACCTGAAACCAAATTGAAAACAC 59.995 40.000 0.00 0.00 0.00 3.32
2584 2774 5.105752 CGACCTGAAACCAAATTGAAAACA 58.894 37.500 0.00 0.00 0.00 2.83
2585 2775 4.506288 CCGACCTGAAACCAAATTGAAAAC 59.494 41.667 0.00 0.00 0.00 2.43
2586 2776 4.442192 CCCGACCTGAAACCAAATTGAAAA 60.442 41.667 0.00 0.00 0.00 2.29
2587 2777 3.068873 CCCGACCTGAAACCAAATTGAAA 59.931 43.478 0.00 0.00 0.00 2.69
2588 2778 2.625790 CCCGACCTGAAACCAAATTGAA 59.374 45.455 0.00 0.00 0.00 2.69
2589 2779 2.235016 CCCGACCTGAAACCAAATTGA 58.765 47.619 0.00 0.00 0.00 2.57
2590 2780 1.960689 ACCCGACCTGAAACCAAATTG 59.039 47.619 0.00 0.00 0.00 2.32
2591 2781 2.375014 ACCCGACCTGAAACCAAATT 57.625 45.000 0.00 0.00 0.00 1.82
2592 2782 2.375014 AACCCGACCTGAAACCAAAT 57.625 45.000 0.00 0.00 0.00 2.32
2593 2783 2.146920 AAACCCGACCTGAAACCAAA 57.853 45.000 0.00 0.00 0.00 3.28
2594 2784 2.146920 AAAACCCGACCTGAAACCAA 57.853 45.000 0.00 0.00 0.00 3.67
2595 2785 2.146920 AAAAACCCGACCTGAAACCA 57.853 45.000 0.00 0.00 0.00 3.67
2612 2802 5.505985 CCGAACAAAATAGGACGACCAAAAA 60.506 40.000 6.71 0.00 38.94 1.94
2613 2803 4.023878 CCGAACAAAATAGGACGACCAAAA 60.024 41.667 6.71 0.00 38.94 2.44
2614 2804 3.499157 CCGAACAAAATAGGACGACCAAA 59.501 43.478 6.71 0.00 38.94 3.28
2615 2805 3.068560 CCGAACAAAATAGGACGACCAA 58.931 45.455 6.71 0.00 38.94 3.67
2616 2806 2.299582 TCCGAACAAAATAGGACGACCA 59.700 45.455 6.71 0.00 38.94 4.02
2617 2807 2.928116 CTCCGAACAAAATAGGACGACC 59.072 50.000 0.00 0.00 0.00 4.79
2618 2808 3.841643 TCTCCGAACAAAATAGGACGAC 58.158 45.455 0.00 0.00 0.00 4.34
2619 2809 4.441079 GGATCTCCGAACAAAATAGGACGA 60.441 45.833 0.00 0.00 0.00 4.20
2620 2810 3.802685 GGATCTCCGAACAAAATAGGACG 59.197 47.826 0.00 0.00 0.00 4.79
2635 2825 1.284408 CAGACTAGCGCGGATCTCC 59.716 63.158 8.83 0.00 0.00 3.71
2636 2826 1.284408 CCAGACTAGCGCGGATCTC 59.716 63.158 8.83 0.00 0.00 2.75
2637 2827 2.196925 CCCAGACTAGCGCGGATCT 61.197 63.158 8.83 2.75 0.00 2.75
2638 2828 2.336809 CCCAGACTAGCGCGGATC 59.663 66.667 8.83 0.00 0.00 3.36
2639 2829 3.917760 GCCCAGACTAGCGCGGAT 61.918 66.667 8.83 0.00 0.00 4.18
2645 2835 2.205911 GAAAAGATCGCCCAGACTAGC 58.794 52.381 0.00 0.00 0.00 3.42
2646 2836 2.464865 CGAAAAGATCGCCCAGACTAG 58.535 52.381 0.00 0.00 45.89 2.57
2647 2837 2.579207 CGAAAAGATCGCCCAGACTA 57.421 50.000 0.00 0.00 45.89 2.59
2648 2838 3.442996 CGAAAAGATCGCCCAGACT 57.557 52.632 0.00 0.00 45.89 3.24
2657 2847 1.135286 CAAAGCCAGCCCGAAAAGATC 60.135 52.381 0.00 0.00 0.00 2.75
2658 2848 0.890683 CAAAGCCAGCCCGAAAAGAT 59.109 50.000 0.00 0.00 0.00 2.40
2659 2849 0.467290 ACAAAGCCAGCCCGAAAAGA 60.467 50.000 0.00 0.00 0.00 2.52
2660 2850 0.039165 GACAAAGCCAGCCCGAAAAG 60.039 55.000 0.00 0.00 0.00 2.27
2661 2851 0.467290 AGACAAAGCCAGCCCGAAAA 60.467 50.000 0.00 0.00 0.00 2.29
2662 2852 0.398696 TAGACAAAGCCAGCCCGAAA 59.601 50.000 0.00 0.00 0.00 3.46
2663 2853 0.398696 TTAGACAAAGCCAGCCCGAA 59.601 50.000 0.00 0.00 0.00 4.30
2664 2854 0.036388 CTTAGACAAAGCCAGCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
2665 2855 0.036388 TCTTAGACAAAGCCAGCCCG 60.036 55.000 0.00 0.00 34.97 6.13
2666 2856 1.743996 CTCTTAGACAAAGCCAGCCC 58.256 55.000 0.00 0.00 34.97 5.19
2667 2857 1.090728 GCTCTTAGACAAAGCCAGCC 58.909 55.000 0.00 0.00 31.77 4.85
2668 2858 1.813513 TGCTCTTAGACAAAGCCAGC 58.186 50.000 0.00 0.00 36.20 4.85
2669 2859 3.870419 GAGATGCTCTTAGACAAAGCCAG 59.130 47.826 0.00 0.00 35.12 4.85
2670 2860 3.517100 AGAGATGCTCTTAGACAAAGCCA 59.483 43.478 0.00 0.00 37.60 4.75
2671 2861 4.135747 AGAGATGCTCTTAGACAAAGCC 57.864 45.455 0.00 0.00 37.60 4.35
2672 2862 4.744631 GCTAGAGATGCTCTTAGACAAAGC 59.255 45.833 1.88 0.43 41.50 3.51
2673 2863 5.900425 TGCTAGAGATGCTCTTAGACAAAG 58.100 41.667 1.88 0.00 41.50 2.77
2674 2864 5.654209 TCTGCTAGAGATGCTCTTAGACAAA 59.346 40.000 1.88 0.00 41.50 2.83
2675 2865 5.067153 GTCTGCTAGAGATGCTCTTAGACAA 59.933 44.000 19.67 0.00 41.50 3.18
2676 2866 4.578516 GTCTGCTAGAGATGCTCTTAGACA 59.421 45.833 19.67 8.52 41.50 3.41
2745 2937 1.305201 GAATTCGCCCCGCAAATCTA 58.695 50.000 0.00 0.00 0.00 1.98
2816 3016 6.034577 CGTTGCAAGTTTCTCTCGTGAATATA 59.965 38.462 0.00 0.00 0.00 0.86
2826 3026 4.900635 AAATGTCGTTGCAAGTTTCTCT 57.099 36.364 0.00 0.00 0.00 3.10
2967 3173 3.259930 CCGCACCGGTCGATTTTT 58.740 55.556 22.53 0.00 42.73 1.94
3007 3213 2.767352 AGGACTGAGCTCCTCCGT 59.233 61.111 12.15 2.92 35.56 4.69
3026 3232 2.036475 CTGGATCAACCTCGATTCCGAT 59.964 50.000 0.00 0.00 44.62 4.18
3032 3238 2.166907 AGGTCTGGATCAACCTCGAT 57.833 50.000 7.63 0.00 42.28 3.59
3061 3267 4.695993 TGCGCGTCATGAAGGCCA 62.696 61.111 8.43 8.45 35.29 5.36
3110 3328 3.957383 GGAGATCTTCCTCGAGCAC 57.043 57.895 6.99 0.00 43.16 4.40
3159 3382 3.855853 GAAGGAGGAGGAGGCCGC 61.856 72.222 0.00 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.