Multiple sequence alignment - TraesCS5B01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G333700 chr5B 100.000 4589 0 0 1 4589 517577811 517573223 0.000000e+00 8475.0
1 TraesCS5B01G333700 chr5B 99.454 366 1 1 2237 2601 100020752 100020387 0.000000e+00 664.0
2 TraesCS5B01G333700 chr5B 97.878 377 7 1 2226 2602 219095579 219095204 0.000000e+00 651.0
3 TraesCS5B01G333700 chr5B 82.653 98 15 2 2606 2702 287436530 287436434 8.180000e-13 86.1
4 TraesCS5B01G333700 chr5A 92.043 2149 131 16 112 2238 543930594 543928464 0.000000e+00 2985.0
5 TraesCS5B01G333700 chr5A 90.343 1253 90 19 2601 3836 543928478 543927240 0.000000e+00 1615.0
6 TraesCS5B01G333700 chr5A 87.706 667 43 19 3840 4499 543927124 543926490 0.000000e+00 741.0
7 TraesCS5B01G333700 chr5A 98.663 374 3 2 2239 2610 548606244 548605871 0.000000e+00 662.0
8 TraesCS5B01G333700 chr5D 92.185 1689 94 25 2 1668 428388943 428387271 0.000000e+00 2353.0
9 TraesCS5B01G333700 chr5D 94.440 1241 41 8 2601 3836 428386428 428385211 0.000000e+00 1884.0
10 TraesCS5B01G333700 chr5D 87.595 790 55 16 3832 4589 428385098 428384320 0.000000e+00 876.0
11 TraesCS5B01G333700 chrUn 92.545 778 50 3 1462 2239 220215119 220215888 0.000000e+00 1109.0
12 TraesCS5B01G333700 chrUn 95.294 255 11 1 2601 2854 220215873 220216127 1.990000e-108 403.0
13 TraesCS5B01G333700 chr7B 91.774 778 55 4 1462 2239 747634815 747635583 0.000000e+00 1074.0
14 TraesCS5B01G333700 chr7A 91.582 784 57 4 1462 2245 671182119 671181345 0.000000e+00 1074.0
15 TraesCS5B01G333700 chr6B 91.774 778 55 4 1462 2239 623377322 623378090 0.000000e+00 1074.0
16 TraesCS5B01G333700 chr6B 99.454 366 2 0 2236 2601 410235487 410235852 0.000000e+00 665.0
17 TraesCS5B01G333700 chr4A 91.774 778 55 4 1462 2239 609391202 609391970 0.000000e+00 1074.0
18 TraesCS5B01G333700 chr4A 91.517 778 56 6 1462 2239 609307586 609308353 0.000000e+00 1062.0
19 TraesCS5B01G333700 chr2B 91.454 784 58 4 1462 2245 35017504 35016730 0.000000e+00 1068.0
20 TraesCS5B01G333700 chr2B 99.724 362 1 0 2240 2601 636550234 636549873 0.000000e+00 664.0
21 TraesCS5B01G333700 chr3B 91.517 778 56 6 1462 2239 89592973 89593740 0.000000e+00 1062.0
22 TraesCS5B01G333700 chr3B 99.724 362 1 0 2241 2602 353864604 353864965 0.000000e+00 664.0
23 TraesCS5B01G333700 chr3A 89.924 794 55 12 1462 2239 22539555 22540339 0.000000e+00 1000.0
24 TraesCS5B01G333700 chr1A 99.452 365 2 0 2241 2605 487492098 487491734 0.000000e+00 664.0
25 TraesCS5B01G333700 chr4B 99.723 361 1 0 2241 2601 609476407 609476047 0.000000e+00 662.0
26 TraesCS5B01G333700 chr4B 83.654 104 15 2 2599 2701 100314682 100314580 3.780000e-16 97.1
27 TraesCS5B01G333700 chr1B 97.662 385 4 4 2238 2620 279902821 279903202 0.000000e+00 656.0
28 TraesCS5B01G333700 chr4D 85.577 104 14 1 2599 2701 67791897 67791794 1.750000e-19 108.0
29 TraesCS5B01G333700 chr4D 83.544 79 10 3 2600 2677 30506021 30506097 2.290000e-08 71.3
30 TraesCS5B01G333700 chr2D 84.615 104 10 5 2601 2701 540311697 540311797 1.050000e-16 99.0
31 TraesCS5B01G333700 chr7D 87.273 55 6 1 2637 2691 135971213 135971160 1.380000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G333700 chr5B 517573223 517577811 4588 True 8475.000000 8475 100.000000 1 4589 1 chr5B.!!$R4 4588
1 TraesCS5B01G333700 chr5A 543926490 543930594 4104 True 1780.333333 2985 90.030667 112 4499 3 chr5A.!!$R2 4387
2 TraesCS5B01G333700 chr5D 428384320 428388943 4623 True 1704.333333 2353 91.406667 2 4589 3 chr5D.!!$R1 4587
3 TraesCS5B01G333700 chrUn 220215119 220216127 1008 False 756.000000 1109 93.919500 1462 2854 2 chrUn.!!$F1 1392
4 TraesCS5B01G333700 chr7B 747634815 747635583 768 False 1074.000000 1074 91.774000 1462 2239 1 chr7B.!!$F1 777
5 TraesCS5B01G333700 chr7A 671181345 671182119 774 True 1074.000000 1074 91.582000 1462 2245 1 chr7A.!!$R1 783
6 TraesCS5B01G333700 chr6B 623377322 623378090 768 False 1074.000000 1074 91.774000 1462 2239 1 chr6B.!!$F2 777
7 TraesCS5B01G333700 chr4A 609391202 609391970 768 False 1074.000000 1074 91.774000 1462 2239 1 chr4A.!!$F2 777
8 TraesCS5B01G333700 chr4A 609307586 609308353 767 False 1062.000000 1062 91.517000 1462 2239 1 chr4A.!!$F1 777
9 TraesCS5B01G333700 chr2B 35016730 35017504 774 True 1068.000000 1068 91.454000 1462 2245 1 chr2B.!!$R1 783
10 TraesCS5B01G333700 chr3B 89592973 89593740 767 False 1062.000000 1062 91.517000 1462 2239 1 chr3B.!!$F1 777
11 TraesCS5B01G333700 chr3A 22539555 22540339 784 False 1000.000000 1000 89.924000 1462 2239 1 chr3A.!!$F1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 114 0.250252 TTCAGCTCCATTGCACGTGA 60.250 50.0 22.23 0.0 34.99 4.35 F
1124 1150 0.108615 CCGGCGGGATTATAGCTCTG 60.109 60.0 20.56 0.0 34.06 3.35 F
2336 2681 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.0 4.27 0.0 36.69 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1127 1153 0.103937 GCCAGAGGATCCGTTGAGAG 59.896 60.0 17.14 5.01 33.66 3.20 R
2398 2743 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.0 0.00 0.00 0.00 4.52 R
4223 4715 0.304098 CACGTCCGGTTTTGCGTTTA 59.696 50.0 0.00 0.00 35.25 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.507149 CCACAGTGTTGTTGCTTGCTAAATA 60.507 40.000 0.00 0.00 34.62 1.40
45 46 7.561251 TGTTGCTTGCTAAATACAGTAGGATA 58.439 34.615 0.00 0.00 0.00 2.59
46 47 7.494625 TGTTGCTTGCTAAATACAGTAGGATAC 59.505 37.037 0.00 0.00 43.47 2.24
81 82 7.275183 TGTAGCTTTACTTGCTGTCATCATAT 58.725 34.615 0.00 0.00 41.32 1.78
108 110 3.581024 TCAAATTCAGCTCCATTGCAC 57.419 42.857 0.00 0.00 34.99 4.57
109 111 2.095110 TCAAATTCAGCTCCATTGCACG 60.095 45.455 0.00 0.00 34.99 5.34
112 114 0.250252 TTCAGCTCCATTGCACGTGA 60.250 50.000 22.23 0.00 34.99 4.35
121 123 4.769688 TCCATTGCACGTGAGAAGATAAT 58.230 39.130 22.23 4.56 0.00 1.28
122 124 5.912892 TCCATTGCACGTGAGAAGATAATA 58.087 37.500 22.23 0.00 0.00 0.98
159 161 6.364568 TGAGTATATGCTGCCACAGAATAT 57.635 37.500 11.82 11.82 43.12 1.28
269 285 0.749454 GGAGATTGCCGCATCCAGTT 60.749 55.000 6.62 0.00 0.00 3.16
286 302 3.341823 CAGTTCAGGATTCAAGGTCCAG 58.658 50.000 0.00 0.00 38.25 3.86
416 432 6.735694 GCAAGAAAGTTTCATAAGCAGGAACA 60.736 38.462 17.65 0.00 0.00 3.18
546 562 9.120538 TCCAAGTAGATTTATTTATGTGGCTTC 57.879 33.333 0.00 0.00 0.00 3.86
633 649 9.545105 TTCATGCACAAATCTTTAATTTGTTCT 57.455 25.926 12.19 0.38 46.45 3.01
659 677 9.176460 TGTATCTGTGATATGATTTCTTTTGCA 57.824 29.630 0.00 0.00 0.00 4.08
682 700 7.328982 TGCAATGTACAGCTGATTAATTTGTTG 59.671 33.333 23.35 12.39 0.00 3.33
683 701 7.541783 GCAATGTACAGCTGATTAATTTGTTGA 59.458 33.333 23.35 0.00 0.00 3.18
773 799 1.021390 CATGGGACGTCTGAAGCACC 61.021 60.000 16.46 6.66 0.00 5.01
800 826 5.181009 CCTGAACAGACTGCATCAAGATTA 58.819 41.667 1.25 0.00 0.00 1.75
807 833 3.193263 ACTGCATCAAGATTAGTGCGAG 58.807 45.455 0.00 0.00 40.34 5.03
816 842 0.747255 ATTAGTGCGAGTCCGAGCAT 59.253 50.000 0.00 0.00 45.69 3.79
859 885 1.000955 CCACTAGTATAGGCCGCCTTG 59.999 57.143 19.35 7.67 44.97 3.61
892 918 2.258013 CGCACGGTCCAACAACCAT 61.258 57.895 0.00 0.00 39.43 3.55
1122 1148 1.448013 GCCGGCGGGATTATAGCTC 60.448 63.158 29.48 2.10 34.06 4.09
1123 1149 1.889530 GCCGGCGGGATTATAGCTCT 61.890 60.000 29.48 0.00 34.06 4.09
1124 1150 0.108615 CCGGCGGGATTATAGCTCTG 60.109 60.000 20.56 0.00 34.06 3.35
1125 1151 0.888619 CGGCGGGATTATAGCTCTGA 59.111 55.000 0.00 0.00 0.00 3.27
1127 1153 2.480416 CGGCGGGATTATAGCTCTGATC 60.480 54.545 0.00 0.00 0.00 2.92
1131 1157 4.202010 GCGGGATTATAGCTCTGATCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
1132 1158 4.946772 CGGGATTATAGCTCTGATCTCTCA 59.053 45.833 0.00 0.00 0.00 3.27
1139 1165 2.622942 AGCTCTGATCTCTCAACGGATC 59.377 50.000 0.00 0.00 38.87 3.36
1146 1172 0.103937 CTCTCAACGGATCCTCTGGC 59.896 60.000 10.75 0.00 0.00 4.85
1147 1173 1.227089 CTCAACGGATCCTCTGGCG 60.227 63.158 10.75 0.00 0.00 5.69
1150 1176 2.660064 AACGGATCCTCTGGCGCTT 61.660 57.895 10.75 0.00 0.00 4.68
1151 1177 2.185310 AACGGATCCTCTGGCGCTTT 62.185 55.000 10.75 0.00 0.00 3.51
1152 1178 2.176273 CGGATCCTCTGGCGCTTTG 61.176 63.158 10.75 0.00 0.00 2.77
1328 1354 2.522836 ATGCACCGAGATAGCTCAAG 57.477 50.000 8.99 1.00 41.36 3.02
1488 1516 3.879932 AGCAAGAACGCAGAAGTTAAC 57.120 42.857 0.00 0.00 34.00 2.01
1602 1630 0.915364 ACTGGAGAGGGCTCAAATCC 59.085 55.000 0.00 0.00 43.14 3.01
1748 1994 0.881118 CCATGTTGTGTGGGTACAGC 59.119 55.000 0.00 0.00 37.52 4.40
1761 2007 3.951037 TGGGTACAGCAATCGCAATTAAT 59.049 39.130 0.00 0.00 42.27 1.40
1834 2080 1.361668 CGCTGAGTTCCGATGGTTGG 61.362 60.000 0.00 0.00 0.00 3.77
1913 2160 3.655486 TGCAGCCATCAAAGTTTCATTG 58.345 40.909 0.00 0.00 0.00 2.82
1916 2163 5.047164 TGCAGCCATCAAAGTTTCATTGTAT 60.047 36.000 0.00 0.00 0.00 2.29
1919 2166 6.311935 CAGCCATCAAAGTTTCATTGTATTGG 59.688 38.462 0.00 0.00 32.12 3.16
1940 2187 5.303165 TGGCATTGCAATTATTGTTTGTCA 58.697 33.333 9.83 2.03 0.00 3.58
2081 2328 8.044908 TGAGAACTACAAAGTGTAAGTCCTTTT 58.955 33.333 0.00 0.00 35.62 2.27
2086 2333 8.480501 ACTACAAAGTGTAAGTCCTTTTACAGA 58.519 33.333 0.00 0.00 42.44 3.41
2131 2394 4.745620 GTCGCACTTCTTTAAGTCTTGACT 59.254 41.667 0.00 0.00 44.28 3.41
2173 2518 7.028926 TGCTACTATCTAGAACAGCAAGTAC 57.971 40.000 14.78 0.00 35.21 2.73
2267 2612 9.363763 ACTTACTTACTTACGAAGCCTTTTATC 57.636 33.333 0.00 0.00 0.00 1.75
2268 2613 8.707938 TTACTTACTTACGAAGCCTTTTATCC 57.292 34.615 0.00 0.00 0.00 2.59
2269 2614 6.111382 ACTTACTTACGAAGCCTTTTATCCC 58.889 40.000 0.00 0.00 0.00 3.85
2270 2615 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
2271 2616 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
2272 2617 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
2273 2618 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
2274 2619 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
2275 2620 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
2276 2621 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
2277 2622 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
2278 2623 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
2279 2624 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
2288 2633 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2289 2634 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2290 2635 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2291 2636 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2292 2637 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
2293 2638 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
2294 2639 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
2295 2640 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
2296 2641 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
2297 2642 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
2298 2643 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
2299 2644 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
2300 2645 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
2301 2646 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
2302 2647 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
2303 2648 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
2304 2649 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
2305 2650 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
2313 2658 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
2314 2659 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
2315 2660 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
2316 2661 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
2317 2662 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
2318 2663 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
2319 2664 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
2320 2665 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
2321 2666 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
2322 2667 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
2323 2668 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
2324 2669 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
2325 2670 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
2326 2671 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
2329 2674 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
2330 2675 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
2331 2676 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
2332 2677 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
2333 2678 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
2334 2679 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
2335 2680 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
2336 2681 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
2337 2682 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
2338 2683 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
2339 2684 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
2340 2685 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
2341 2686 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
2342 2687 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
2343 2688 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
2344 2689 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
2345 2690 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
2346 2691 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
2347 2692 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
2348 2693 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
2349 2694 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
2350 2695 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
2351 2696 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
2352 2697 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
2353 2698 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
2354 2699 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
2355 2700 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
2356 2701 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
2357 2702 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
2378 2723 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
2379 2724 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
2380 2725 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
2381 2726 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
2382 2727 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
2383 2728 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
2384 2729 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
2385 2730 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
2386 2731 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
2387 2732 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
2388 2733 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
2389 2734 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
2390 2735 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
2391 2736 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
2392 2737 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
2393 2738 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
2394 2739 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
2395 2740 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
2396 2741 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
2397 2742 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
2398 2743 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
2399 2744 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
2400 2745 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
2401 2746 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
2411 2756 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2412 2757 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2413 2758 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2414 2759 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2415 2760 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2416 2761 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
2417 2762 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2418 2763 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
2419 2764 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
2420 2765 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
2421 2766 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
2422 2767 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
2423 2768 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
2424 2769 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
2425 2770 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
2426 2771 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
2427 2772 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
2428 2773 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
2429 2774 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
2430 2775 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
2431 2776 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
2432 2777 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
2433 2778 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
2434 2779 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
2435 2780 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
2443 2788 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
2444 2789 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
2445 2790 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
2446 2791 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
2447 2792 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
2448 2793 6.553615 GAAACCCTTTCACGAGGACTTCCT 62.554 50.000 0.00 0.00 43.41 3.36
2449 2794 7.251005 GAAACCCTTTCACGAGGACTTCCTA 62.251 48.000 0.00 0.00 42.02 2.94
2450 2795 8.945486 GAAACCCTTTCACGAGGACTTCCTAG 62.945 50.000 0.00 0.27 42.02 3.02
2461 2806 2.537143 GACTTCCTAGGAGGTCAACCA 58.463 52.381 36.64 11.55 46.32 3.67
2462 2807 3.108376 GACTTCCTAGGAGGTCAACCAT 58.892 50.000 36.64 12.49 46.32 3.55
2463 2808 3.108376 ACTTCCTAGGAGGTCAACCATC 58.892 50.000 20.38 0.00 36.53 3.51
2464 2809 2.176247 TCCTAGGAGGTCAACCATCC 57.824 55.000 7.62 5.87 36.53 3.51
2465 2810 1.651770 TCCTAGGAGGTCAACCATCCT 59.348 52.381 7.62 18.27 42.41 3.24
2466 2811 2.863238 TCCTAGGAGGTCAACCATCCTA 59.137 50.000 7.62 18.46 41.10 2.94
2468 2813 2.950990 AGGAGGTCAACCATCCTAGT 57.049 50.000 14.74 0.00 39.93 2.57
2469 2814 5.063017 CTAGGAGGTCAACCATCCTAGTA 57.937 47.826 26.75 12.82 45.94 1.82
2470 2815 3.644335 AGGAGGTCAACCATCCTAGTAC 58.356 50.000 14.74 0.00 39.93 2.73
2471 2816 3.272551 AGGAGGTCAACCATCCTAGTACT 59.727 47.826 14.74 0.00 39.93 2.73
2472 2817 4.481280 AGGAGGTCAACCATCCTAGTACTA 59.519 45.833 14.74 1.89 39.93 1.82
2473 2818 5.136392 AGGAGGTCAACCATCCTAGTACTAT 59.864 44.000 14.74 0.00 39.93 2.12
2474 2819 5.839606 GGAGGTCAACCATCCTAGTACTATT 59.160 44.000 2.33 0.00 38.89 1.73
2475 2820 6.015265 GGAGGTCAACCATCCTAGTACTATTC 60.015 46.154 2.33 0.00 38.89 1.75
2476 2821 6.684538 AGGTCAACCATCCTAGTACTATTCT 58.315 40.000 2.33 0.00 38.89 2.40
2477 2822 6.778559 AGGTCAACCATCCTAGTACTATTCTC 59.221 42.308 2.33 0.00 38.89 2.87
2478 2823 6.294065 GGTCAACCATCCTAGTACTATTCTCG 60.294 46.154 2.33 0.00 35.64 4.04
2479 2824 5.241064 TCAACCATCCTAGTACTATTCTCGC 59.759 44.000 2.33 0.00 0.00 5.03
2480 2825 4.988029 ACCATCCTAGTACTATTCTCGCT 58.012 43.478 2.33 0.00 0.00 4.93
2481 2826 5.005094 ACCATCCTAGTACTATTCTCGCTC 58.995 45.833 2.33 0.00 0.00 5.03
2482 2827 5.004448 CCATCCTAGTACTATTCTCGCTCA 58.996 45.833 2.33 0.00 0.00 4.26
2483 2828 5.473846 CCATCCTAGTACTATTCTCGCTCAA 59.526 44.000 2.33 0.00 0.00 3.02
2484 2829 6.016192 CCATCCTAGTACTATTCTCGCTCAAA 60.016 42.308 2.33 0.00 0.00 2.69
2485 2830 7.309499 CCATCCTAGTACTATTCTCGCTCAAAT 60.309 40.741 2.33 0.00 0.00 2.32
2486 2831 6.971602 TCCTAGTACTATTCTCGCTCAAATG 58.028 40.000 2.33 0.00 0.00 2.32
2487 2832 6.016192 TCCTAGTACTATTCTCGCTCAAATGG 60.016 42.308 2.33 0.00 0.00 3.16
2488 2833 4.950050 AGTACTATTCTCGCTCAAATGGG 58.050 43.478 0.00 0.00 0.00 4.00
2489 2834 3.914426 ACTATTCTCGCTCAAATGGGT 57.086 42.857 0.00 0.00 0.00 4.51
2490 2835 4.222124 ACTATTCTCGCTCAAATGGGTT 57.778 40.909 0.00 0.00 0.00 4.11
2491 2836 4.589908 ACTATTCTCGCTCAAATGGGTTT 58.410 39.130 0.00 0.00 0.00 3.27
2492 2837 4.636206 ACTATTCTCGCTCAAATGGGTTTC 59.364 41.667 0.00 0.00 0.00 2.78
2493 2838 2.559698 TCTCGCTCAAATGGGTTTCA 57.440 45.000 0.00 0.00 0.00 2.69
2494 2839 3.071874 TCTCGCTCAAATGGGTTTCAT 57.928 42.857 0.00 0.00 37.79 2.57
2495 2840 4.214986 TCTCGCTCAAATGGGTTTCATA 57.785 40.909 0.00 0.00 34.44 2.15
2496 2841 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
2497 2842 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
2498 2843 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
2499 2844 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
2501 2846 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
2502 2847 5.010012 GCTCAAATGGGTTTCATACCTATGG 59.990 44.000 0.00 0.00 46.51 2.74
2503 2848 5.454062 TCAAATGGGTTTCATACCTATGGG 58.546 41.667 0.00 0.00 46.51 4.00
2504 2849 5.194740 TCAAATGGGTTTCATACCTATGGGA 59.805 40.000 0.25 0.00 46.51 4.37
2505 2850 4.724279 ATGGGTTTCATACCTATGGGAC 57.276 45.455 0.25 0.00 45.57 4.46
2506 2851 3.743132 TGGGTTTCATACCTATGGGACT 58.257 45.455 0.25 0.00 46.86 3.85
2507 2852 3.458118 TGGGTTTCATACCTATGGGACTG 59.542 47.826 0.25 0.00 46.86 3.51
2508 2853 3.181443 GGGTTTCATACCTATGGGACTGG 60.181 52.174 0.25 0.00 46.86 4.00
2509 2854 3.477530 GTTTCATACCTATGGGACTGGC 58.522 50.000 0.25 0.00 34.50 4.85
2510 2855 2.795291 TCATACCTATGGGACTGGCT 57.205 50.000 0.25 0.00 34.50 4.75
2511 2856 3.915346 TCATACCTATGGGACTGGCTA 57.085 47.619 0.25 0.00 34.50 3.93
2512 2857 3.779444 TCATACCTATGGGACTGGCTAG 58.221 50.000 0.25 0.00 34.50 3.42
2513 2858 3.142217 TCATACCTATGGGACTGGCTAGT 59.858 47.826 0.69 0.69 35.65 2.57
2514 2859 2.570386 ACCTATGGGACTGGCTAGTT 57.430 50.000 3.47 0.00 37.25 2.24
2515 2860 2.846950 ACCTATGGGACTGGCTAGTTT 58.153 47.619 3.47 0.00 37.25 2.66
2516 2861 3.190439 ACCTATGGGACTGGCTAGTTTT 58.810 45.455 3.47 0.00 37.25 2.43
2517 2862 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
2518 2863 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
2519 2864 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
2520 2865 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
2521 2866 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
2522 2867 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
2523 2868 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
2524 2869 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
2525 2870 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
2526 2871 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
2527 2872 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
2528 2873 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
2529 2874 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
2530 2875 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
2531 2876 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
2541 2886 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
2542 2887 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
2543 2888 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
2544 2889 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
2545 2890 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
2546 2891 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
2547 2892 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2548 2893 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
2549 2894 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
2550 2895 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
2551 2896 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
2552 2897 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
2553 2898 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
2554 2899 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
2555 2900 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
2556 2901 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
2557 2902 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
2558 2903 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
2559 2904 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
2560 2905 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
2561 2906 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
2562 2907 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
2563 2908 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
2564 2909 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
2565 2910 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
2566 2911 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
2567 2912 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
2577 2922 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
2578 2923 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
2579 2924 2.902343 GCTTGGGACCGGCTATGC 60.902 66.667 0.00 0.00 0.00 3.14
2580 2925 2.203209 CTTGGGACCGGCTATGCC 60.203 66.667 0.00 0.00 46.75 4.40
2593 2938 4.464069 GGCTATGCCTAGAAGACATAGG 57.536 50.000 16.76 0.00 46.69 2.57
2599 2944 2.588620 CCTAGAAGACATAGGCGGAGT 58.411 52.381 0.00 0.00 33.76 3.85
2600 2945 2.959707 CCTAGAAGACATAGGCGGAGTT 59.040 50.000 0.00 0.00 33.76 3.01
2601 2946 2.969628 AGAAGACATAGGCGGAGTTG 57.030 50.000 0.00 0.00 0.00 3.16
2602 2947 2.180276 AGAAGACATAGGCGGAGTTGT 58.820 47.619 0.00 0.00 0.00 3.32
2603 2948 2.567615 AGAAGACATAGGCGGAGTTGTT 59.432 45.455 0.00 0.00 0.00 2.83
2604 2949 2.386661 AGACATAGGCGGAGTTGTTG 57.613 50.000 0.00 0.00 0.00 3.33
2605 2950 1.623811 AGACATAGGCGGAGTTGTTGT 59.376 47.619 0.00 0.00 0.00 3.32
2606 2951 2.829720 AGACATAGGCGGAGTTGTTGTA 59.170 45.455 0.00 0.00 0.00 2.41
2607 2952 3.119101 AGACATAGGCGGAGTTGTTGTAG 60.119 47.826 0.00 0.00 0.00 2.74
2608 2953 2.829720 ACATAGGCGGAGTTGTTGTAGA 59.170 45.455 0.00 0.00 0.00 2.59
2609 2954 3.451178 ACATAGGCGGAGTTGTTGTAGAT 59.549 43.478 0.00 0.00 0.00 1.98
2610 2955 2.386661 AGGCGGAGTTGTTGTAGATG 57.613 50.000 0.00 0.00 0.00 2.90
2611 2956 1.623811 AGGCGGAGTTGTTGTAGATGT 59.376 47.619 0.00 0.00 0.00 3.06
2612 2957 2.038557 AGGCGGAGTTGTTGTAGATGTT 59.961 45.455 0.00 0.00 0.00 2.71
2613 2958 3.259876 AGGCGGAGTTGTTGTAGATGTTA 59.740 43.478 0.00 0.00 0.00 2.41
2614 2959 3.998341 GGCGGAGTTGTTGTAGATGTTAA 59.002 43.478 0.00 0.00 0.00 2.01
2615 2960 4.634443 GGCGGAGTTGTTGTAGATGTTAAT 59.366 41.667 0.00 0.00 0.00 1.40
2671 3016 7.280356 AGAAGTTTGACTTAGGACAAAGCTAA 58.720 34.615 2.92 0.00 38.80 3.09
2882 3229 7.607607 TGAGAAAAATAGAATCTAAGCTGTGCA 59.392 33.333 0.00 0.00 0.00 4.57
2950 3306 2.158827 TGGATGCACATACCGCTAACAT 60.159 45.455 0.00 0.00 0.00 2.71
3027 3383 9.892130 ACAAAGGTCAAATTTTTAATGGTTACA 57.108 25.926 0.00 0.00 0.00 2.41
3051 3407 4.331992 ACTGATCTTGATGTGAAAGATGCG 59.668 41.667 3.51 0.00 42.94 4.73
3215 3571 1.405105 GTGTTTCTTGGCTGCTGTGAA 59.595 47.619 0.00 0.00 0.00 3.18
3261 3617 7.031372 GTCATACCTGATAACGTGTAAAGTGA 58.969 38.462 0.00 0.00 32.98 3.41
3381 3742 6.013725 TCTGGGTGTGTAGACAATATGAAGTT 60.014 38.462 0.00 0.00 32.49 2.66
3435 3796 0.820871 GAGCCTTCTCACGGTCATCT 59.179 55.000 0.00 0.00 39.16 2.90
3465 3827 4.881850 TCTCAGTTTTTCAGGAAGTTCCAC 59.118 41.667 23.87 11.70 39.61 4.02
3501 3863 1.614241 CCGTCTCGAACCCCTTCCAT 61.614 60.000 0.00 0.00 0.00 3.41
3628 3993 0.461870 CCCTCCGCAATCAATCGTCA 60.462 55.000 0.00 0.00 0.00 4.35
3633 3998 2.488079 GCAATCAATCGTCATGCGC 58.512 52.632 0.00 0.00 41.07 6.09
3649 4014 1.574702 GCGCGCTTTCCACCTTAACT 61.575 55.000 26.67 0.00 0.00 2.24
3653 4018 1.882352 CGCTTTCCACCTTAACTGGCT 60.882 52.381 0.00 0.00 0.00 4.75
3674 4039 5.071923 GGCTACCTATCTTTACCTCCATTGT 59.928 44.000 0.00 0.00 0.00 2.71
3683 4048 7.016153 TCTTTACCTCCATTGTTGTATCACT 57.984 36.000 0.00 0.00 0.00 3.41
3685 4050 8.038944 TCTTTACCTCCATTGTTGTATCACTAC 58.961 37.037 0.00 0.00 0.00 2.73
3704 4069 6.649141 TCACTACATGTATGTTGGACAAGAAC 59.351 38.462 5.91 0.00 41.97 3.01
3769 4134 4.989279 ACTACAAAGCATTATGCCTTGG 57.011 40.909 26.01 15.12 46.15 3.61
3817 4183 1.160137 GTGACCCATTCAGTGCTGTC 58.840 55.000 0.00 0.00 33.71 3.51
3862 4345 2.434428 CATGGCAGAAGCAGAGTTTCT 58.566 47.619 0.00 0.00 44.61 2.52
3935 4426 3.117963 CCTCTCCTCTGCCTTTCATCATT 60.118 47.826 0.00 0.00 0.00 2.57
3941 4432 4.384537 CCTCTGCCTTTCATCATTAGGTGA 60.385 45.833 0.00 0.00 42.06 4.02
3944 4435 4.922206 TGCCTTTCATCATTAGGTGAAGT 58.078 39.130 0.00 0.00 40.97 3.01
3991 4482 3.197983 ACTCCCATAATCTTGGACCCAA 58.802 45.455 1.11 1.11 39.25 4.12
4002 4493 6.879367 ATCTTGGACCCAATTGATTCAAAT 57.121 33.333 7.12 0.00 35.20 2.32
4008 4499 6.709846 TGGACCCAATTGATTCAAATTCAAAC 59.290 34.615 7.12 0.00 0.00 2.93
4040 4531 7.639113 ATTAATGCTCCTTCCGTATCAAAAA 57.361 32.000 0.00 0.00 0.00 1.94
4048 4539 9.052759 GCTCCTTCCGTATCAAAAATATAAGAA 57.947 33.333 0.00 0.00 0.00 2.52
4079 4570 7.246674 TGACACACTCTTTGTATCAGAAAAC 57.753 36.000 0.00 0.00 36.69 2.43
4082 4573 6.315393 ACACACTCTTTGTATCAGAAAACGTT 59.685 34.615 0.00 0.00 35.67 3.99
4153 4645 8.045720 AGGAAAAGATAATATTGGTGAGCCTA 57.954 34.615 0.00 0.00 35.27 3.93
4211 4703 0.179018 AGCAAGACAACTCCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
4223 4715 3.394606 ACTCCACCACCACAATACTTTCT 59.605 43.478 0.00 0.00 0.00 2.52
4399 4909 5.667466 ACCGATTAAACATAGTACCACTGG 58.333 41.667 0.00 0.00 0.00 4.00
4431 4941 5.114780 ACTAACTCAGAAGCATGCTATGTG 58.885 41.667 23.00 23.09 0.00 3.21
4490 5000 5.355071 TCGATTTTCTCAACCCATCTCATTG 59.645 40.000 0.00 0.00 0.00 2.82
4492 5002 6.349611 CGATTTTCTCAACCCATCTCATTGTT 60.350 38.462 0.00 0.00 0.00 2.83
4499 5016 2.295885 CCCATCTCATTGTTCAGGAGC 58.704 52.381 0.00 0.00 32.96 4.70
4516 5033 3.787001 CCCTCCTCCTCAACCGGC 61.787 72.222 0.00 0.00 0.00 6.13
4528 5045 3.576232 ACCGGCCAAGGTTCTTCT 58.424 55.556 0.00 0.00 43.00 2.85
4540 5057 0.608640 GTTCTTCTTCTCCTCCGGCA 59.391 55.000 0.00 0.00 0.00 5.69
4585 5102 2.556287 CGTGGCGTCCTCTTTTGC 59.444 61.111 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.457035 AGCAAGCAACAACACTGTGG 59.543 50.000 13.09 0.00 35.37 4.17
12 13 3.419264 TTAGCAAGCAACAACACTGTG 57.581 42.857 6.19 6.19 35.37 3.66
13 14 4.654091 ATTTAGCAAGCAACAACACTGT 57.346 36.364 0.00 0.00 37.39 3.55
20 21 5.800296 TCCTACTGTATTTAGCAAGCAACA 58.200 37.500 0.00 0.00 0.00 3.33
45 46 7.229506 AGCAAGTAAAGCTACAAATTTCTCAGT 59.770 33.333 0.00 0.00 41.32 3.41
46 47 7.536622 CAGCAAGTAAAGCTACAAATTTCTCAG 59.463 37.037 0.00 0.00 41.14 3.35
47 48 7.013274 ACAGCAAGTAAAGCTACAAATTTCTCA 59.987 33.333 0.00 0.00 41.14 3.27
48 49 7.363431 ACAGCAAGTAAAGCTACAAATTTCTC 58.637 34.615 0.00 0.00 41.14 2.87
49 50 7.013274 TGACAGCAAGTAAAGCTACAAATTTCT 59.987 33.333 0.00 0.00 41.14 2.52
81 82 8.476447 TGCAATGGAGCTGAATTTGATAATTAA 58.524 29.630 0.00 0.00 33.14 1.40
100 102 5.050091 GGTATTATCTTCTCACGTGCAATGG 60.050 44.000 11.67 0.00 0.00 3.16
105 107 4.025647 GCAAGGTATTATCTTCTCACGTGC 60.026 45.833 11.67 0.00 0.00 5.34
108 110 5.580691 TGTTGCAAGGTATTATCTTCTCACG 59.419 40.000 0.00 0.00 0.00 4.35
109 111 6.818644 TCTGTTGCAAGGTATTATCTTCTCAC 59.181 38.462 0.00 0.00 0.00 3.51
112 114 8.049117 TCAATCTGTTGCAAGGTATTATCTTCT 58.951 33.333 0.00 0.00 35.26 2.85
121 123 6.483307 GCATATACTCAATCTGTTGCAAGGTA 59.517 38.462 0.00 0.00 35.26 3.08
122 124 5.297776 GCATATACTCAATCTGTTGCAAGGT 59.702 40.000 0.00 0.00 35.26 3.50
159 161 9.851686 ATTCTGTTGCAGGATATACTCAAATTA 57.148 29.630 2.53 0.00 26.06 1.40
173 175 5.220931 GCACCTTATTCTATTCTGTTGCAGG 60.221 44.000 0.00 0.00 31.51 4.85
269 285 3.244911 GGAAACTGGACCTTGAATCCTGA 60.245 47.826 5.08 0.00 38.28 3.86
286 302 1.322538 ATTGCGGATGCCCTGGAAAC 61.323 55.000 0.00 0.00 41.78 2.78
407 423 3.584848 AGAGGATAACAAGTGTTCCTGCT 59.415 43.478 9.02 5.23 39.31 4.24
471 487 8.458843 TGTTCTCAACCTTCTTTTCTTTTGTAG 58.541 33.333 0.00 0.00 0.00 2.74
479 495 7.805542 GCTTATTCTGTTCTCAACCTTCTTTTC 59.194 37.037 0.00 0.00 0.00 2.29
546 562 7.862648 CAGAATGTGATATCACCAATCTTGAG 58.137 38.462 28.64 14.92 45.88 3.02
632 648 9.661187 GCAAAAGAAATCATATCACAGATACAG 57.339 33.333 0.00 0.00 0.00 2.74
633 649 9.176460 TGCAAAAGAAATCATATCACAGATACA 57.824 29.630 0.00 0.00 0.00 2.29
682 700 6.283694 TCAACAGATCATACCACAGCTATTC 58.716 40.000 0.00 0.00 0.00 1.75
683 701 6.239217 TCAACAGATCATACCACAGCTATT 57.761 37.500 0.00 0.00 0.00 1.73
687 705 7.502120 AATAATCAACAGATCATACCACAGC 57.498 36.000 0.00 0.00 0.00 4.40
714 733 6.151648 CAGGTTTCAACACCAGATGATGTAAT 59.848 38.462 0.00 0.00 39.62 1.89
773 799 1.728971 GATGCAGTCTGTTCAGGTTCG 59.271 52.381 0.93 0.00 0.00 3.95
800 826 2.492090 GATGCTCGGACTCGCACT 59.508 61.111 0.00 0.00 39.21 4.40
816 842 1.681327 GAGGGCCACTGTCTACCGA 60.681 63.158 6.18 0.00 0.00 4.69
892 918 1.587043 CGACGGAGGCTGTTCTCTGA 61.587 60.000 13.24 0.00 41.44 3.27
989 1015 0.804544 GACGATCATGTTTCCGCCGA 60.805 55.000 0.00 0.00 0.00 5.54
1105 1131 0.108615 CAGAGCTATAATCCCGCCGG 60.109 60.000 0.00 0.00 0.00 6.13
1114 1140 5.377478 TCCGTTGAGAGATCAGAGCTATAA 58.623 41.667 0.00 0.00 0.00 0.98
1117 1143 3.283259 TCCGTTGAGAGATCAGAGCTA 57.717 47.619 0.00 0.00 0.00 3.32
1122 1148 3.004629 CAGAGGATCCGTTGAGAGATCAG 59.995 52.174 5.98 0.00 40.59 2.90
1123 1149 2.954989 CAGAGGATCCGTTGAGAGATCA 59.045 50.000 5.98 0.00 40.59 2.92
1124 1150 2.295909 CCAGAGGATCCGTTGAGAGATC 59.704 54.545 17.14 2.45 38.54 2.75
1125 1151 2.315176 CCAGAGGATCCGTTGAGAGAT 58.685 52.381 17.14 0.00 33.66 2.75
1127 1153 0.103937 GCCAGAGGATCCGTTGAGAG 59.896 60.000 17.14 5.01 33.66 3.20
1131 1157 2.859273 AAGCGCCAGAGGATCCGTTG 62.859 60.000 2.29 8.77 33.66 4.10
1132 1158 2.185310 AAAGCGCCAGAGGATCCGTT 62.185 55.000 2.29 0.00 33.66 4.44
1139 1165 4.112341 GCAGCAAAGCGCCAGAGG 62.112 66.667 2.29 0.00 44.04 3.69
1146 1172 0.936297 GGTTGTTCTGCAGCAAAGCG 60.936 55.000 9.47 0.00 37.31 4.68
1147 1173 0.598419 GGGTTGTTCTGCAGCAAAGC 60.598 55.000 9.47 12.03 0.00 3.51
1150 1176 2.844451 GCGGGTTGTTCTGCAGCAA 61.844 57.895 9.47 5.69 38.79 3.91
1151 1177 3.286751 GCGGGTTGTTCTGCAGCA 61.287 61.111 9.47 0.00 38.79 4.41
1152 1178 2.980233 AGCGGGTTGTTCTGCAGC 60.980 61.111 9.47 0.00 41.26 5.25
1264 1290 0.252197 AGATTGCCACGAGGGGTAAC 59.748 55.000 0.00 0.00 35.29 2.50
1372 1398 6.756542 TCCATTGACAGATACAACAAGATACG 59.243 38.462 0.00 0.00 0.00 3.06
1416 1442 6.028987 GGTTCGAGATGAGTTAGTTGTCTAC 58.971 44.000 0.00 0.00 0.00 2.59
1488 1516 8.178964 CCATGGTTTTGAATGAATAAATTGCAG 58.821 33.333 2.57 0.00 0.00 4.41
1574 1602 2.026449 AGCCCTCTCCAGTTCATTTGAG 60.026 50.000 0.00 0.00 0.00 3.02
1602 1630 3.131933 AGGATTTGACAGGAGATGAGTCG 59.868 47.826 0.00 0.00 35.09 4.18
1699 1727 3.671716 AGTGCTCCCTTTTACTTAACGG 58.328 45.455 0.00 0.00 0.00 4.44
1717 1963 5.691305 CCACACAACATGGAATTTGTAAGTG 59.309 40.000 0.00 4.39 39.87 3.16
1719 1965 5.221422 ACCCACACAACATGGAATTTGTAAG 60.221 40.000 0.00 0.00 39.87 2.34
1761 2007 0.959867 TGCATAGCAGAGCGGCAAAA 60.960 50.000 1.45 0.00 33.76 2.44
1768 2014 4.549458 TCAAAAACTTTGCATAGCAGAGC 58.451 39.130 9.16 0.00 43.28 4.09
1834 2080 8.402798 TGAGTCTAACTCTAATGAGATGGATC 57.597 38.462 8.44 0.00 45.27 3.36
1913 2160 7.750769 ACAAACAATAATTGCAATGCCAATAC 58.249 30.769 13.82 0.00 34.50 1.89
1916 2163 5.761726 TGACAAACAATAATTGCAATGCCAA 59.238 32.000 13.82 0.00 0.00 4.52
1940 2187 8.480133 AAGTAAGATAGACGATACAAGGGATT 57.520 34.615 0.00 0.00 0.00 3.01
1987 2234 6.238759 GCACTCTTTTTAGGATTGTTCACTGT 60.239 38.462 0.00 0.00 0.00 3.55
2081 2328 5.338871 GGGACAGGTGATAACCAAATCTGTA 60.339 44.000 0.85 0.00 34.91 2.74
2086 2333 4.344104 CTTGGGACAGGTGATAACCAAAT 58.656 43.478 0.85 0.00 42.39 2.32
2241 2586 9.363763 GATAAAAGGCTTCGTAAGTAAGTAAGT 57.636 33.333 0.00 0.00 39.48 2.24
2242 2587 8.815189 GGATAAAAGGCTTCGTAAGTAAGTAAG 58.185 37.037 0.00 0.00 39.48 2.34
2243 2588 7.765819 GGGATAAAAGGCTTCGTAAGTAAGTAA 59.234 37.037 0.00 0.00 39.48 2.24
2244 2589 7.093377 TGGGATAAAAGGCTTCGTAAGTAAGTA 60.093 37.037 0.00 0.00 39.48 2.24
2245 2590 6.111382 GGGATAAAAGGCTTCGTAAGTAAGT 58.889 40.000 0.00 0.00 39.48 2.24
2246 2591 6.110707 TGGGATAAAAGGCTTCGTAAGTAAG 58.889 40.000 0.00 0.00 39.48 2.34
2247 2592 6.052405 TGGGATAAAAGGCTTCGTAAGTAA 57.948 37.500 0.00 0.00 39.48 2.24
2248 2593 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
2249 2594 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
2250 2595 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
2251 2596 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
2252 2597 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
2253 2598 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
2254 2599 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
2255 2600 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
2256 2601 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
2257 2602 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
2269 2614 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2270 2615 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2271 2616 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
2272 2617 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
2273 2618 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
2274 2619 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
2275 2620 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
2276 2621 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
2277 2622 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
2278 2623 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
2279 2624 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
2280 2625 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
2281 2626 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
2282 2627 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
2284 2629 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
2294 2639 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
2295 2640 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
2296 2641 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
2297 2642 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
2298 2643 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
2299 2644 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
2300 2645 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
2301 2646 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
2302 2647 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
2303 2648 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
2304 2649 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
2305 2650 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
2306 2651 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
2307 2652 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
2308 2653 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
2309 2654 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
2310 2655 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
2311 2656 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
2312 2657 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
2324 2669 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
2325 2670 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
2326 2671 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
2327 2672 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
2328 2673 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
2329 2674 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
2330 2675 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
2331 2676 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
2332 2677 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
2333 2678 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
2334 2679 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
2335 2680 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
2336 2681 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
2337 2682 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
2357 2702 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
2358 2703 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
2359 2704 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
2360 2705 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
2361 2706 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
2362 2707 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
2363 2708 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
2364 2709 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
2366 2711 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
2367 2712 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
2368 2713 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
2369 2714 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
2370 2715 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
2371 2716 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
2372 2717 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
2373 2718 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
2374 2719 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
2375 2720 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
2376 2721 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
2377 2722 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
2378 2723 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
2379 2724 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
2380 2725 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
2381 2726 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
2382 2727 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
2383 2728 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
2384 2729 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
2395 2740 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2396 2741 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2397 2742 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2398 2743 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
2399 2744 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
2400 2745 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
2401 2746 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
2402 2747 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
2403 2748 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
2404 2749 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
2405 2750 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
2406 2751 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
2407 2752 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
2408 2753 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
2409 2754 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
2410 2755 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
2411 2756 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
2412 2757 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
2413 2758 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
2424 2769 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
2425 2770 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
2426 2771 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
2427 2772 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
2428 2773 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
2429 2774 0.977395 AGGAAGTCCTCGTGAAAGGG 59.023 55.000 0.00 0.00 44.77 3.95
2430 2775 2.166664 CCTAGGAAGTCCTCGTGAAAGG 59.833 54.545 1.05 0.05 44.77 3.11
2431 2776 3.090037 TCCTAGGAAGTCCTCGTGAAAG 58.910 50.000 9.71 0.00 44.77 2.62
2432 2777 3.090037 CTCCTAGGAAGTCCTCGTGAAA 58.910 50.000 13.77 0.00 44.77 2.69
2433 2778 2.620886 CCTCCTAGGAAGTCCTCGTGAA 60.621 54.545 13.77 0.00 44.77 3.18
2434 2779 1.064611 CCTCCTAGGAAGTCCTCGTGA 60.065 57.143 13.77 0.00 44.77 4.35
2435 2780 1.341187 ACCTCCTAGGAAGTCCTCGTG 60.341 57.143 13.77 0.00 44.77 4.35
2436 2781 1.001282 ACCTCCTAGGAAGTCCTCGT 58.999 55.000 13.77 0.00 44.77 4.18
2437 2782 1.064611 TGACCTCCTAGGAAGTCCTCG 60.065 57.143 29.70 10.80 44.77 4.63
2438 2783 2.761767 GTTGACCTCCTAGGAAGTCCTC 59.238 54.545 29.70 20.81 44.77 3.71
2439 2784 5.126160 TGGTTGACCTCCTAGGAAGTCCT 62.126 52.174 29.70 4.98 42.66 3.85
2440 2785 1.832366 GGTTGACCTCCTAGGAAGTCC 59.168 57.143 29.70 18.76 37.67 3.85
2441 2786 2.537143 TGGTTGACCTCCTAGGAAGTC 58.463 52.381 27.36 27.36 37.67 3.01
2442 2787 2.715763 TGGTTGACCTCCTAGGAAGT 57.284 50.000 13.10 13.10 37.67 3.01
2443 2788 2.436173 GGATGGTTGACCTCCTAGGAAG 59.564 54.545 13.77 9.66 37.67 3.46
2444 2789 2.045885 AGGATGGTTGACCTCCTAGGAA 59.954 50.000 13.77 0.00 39.93 3.36
2445 2790 1.651770 AGGATGGTTGACCTCCTAGGA 59.348 52.381 11.98 11.98 39.93 2.94
2446 2791 2.182516 AGGATGGTTGACCTCCTAGG 57.817 55.000 15.28 0.82 39.93 3.02
2448 2793 4.481280 AGTACTAGGATGGTTGACCTCCTA 59.519 45.833 18.86 18.86 41.10 2.94
2449 2794 2.950990 ACTAGGATGGTTGACCTCCT 57.049 50.000 18.70 18.70 42.41 3.69
2450 2795 3.644335 AGTACTAGGATGGTTGACCTCC 58.356 50.000 0.00 6.21 37.68 4.30
2451 2796 6.778559 AGAATAGTACTAGGATGGTTGACCTC 59.221 42.308 8.85 0.00 37.68 3.85
2452 2797 6.684538 AGAATAGTACTAGGATGGTTGACCT 58.315 40.000 8.85 0.00 39.95 3.85
2453 2798 6.294065 CGAGAATAGTACTAGGATGGTTGACC 60.294 46.154 8.85 0.00 0.00 4.02
2454 2799 6.670233 CGAGAATAGTACTAGGATGGTTGAC 58.330 44.000 8.85 0.00 0.00 3.18
2455 2800 5.241064 GCGAGAATAGTACTAGGATGGTTGA 59.759 44.000 8.85 0.00 0.00 3.18
2456 2801 5.241949 AGCGAGAATAGTACTAGGATGGTTG 59.758 44.000 8.85 0.00 0.00 3.77
2457 2802 5.386924 AGCGAGAATAGTACTAGGATGGTT 58.613 41.667 8.85 0.00 0.00 3.67
2458 2803 4.988029 AGCGAGAATAGTACTAGGATGGT 58.012 43.478 8.85 0.47 0.00 3.55
2459 2804 5.004448 TGAGCGAGAATAGTACTAGGATGG 58.996 45.833 8.85 0.00 0.00 3.51
2460 2805 6.561737 TTGAGCGAGAATAGTACTAGGATG 57.438 41.667 8.85 0.00 0.00 3.51
2461 2806 7.309499 CCATTTGAGCGAGAATAGTACTAGGAT 60.309 40.741 8.85 0.00 0.00 3.24
2462 2807 6.016192 CCATTTGAGCGAGAATAGTACTAGGA 60.016 42.308 8.85 0.00 0.00 2.94
2463 2808 6.153067 CCATTTGAGCGAGAATAGTACTAGG 58.847 44.000 8.85 0.00 0.00 3.02
2464 2809 6.153067 CCCATTTGAGCGAGAATAGTACTAG 58.847 44.000 8.85 0.00 0.00 2.57
2465 2810 5.597182 ACCCATTTGAGCGAGAATAGTACTA 59.403 40.000 4.77 4.77 0.00 1.82
2466 2811 4.406003 ACCCATTTGAGCGAGAATAGTACT 59.594 41.667 0.00 0.00 0.00 2.73
2467 2812 4.694339 ACCCATTTGAGCGAGAATAGTAC 58.306 43.478 0.00 0.00 0.00 2.73
2468 2813 5.353394 AACCCATTTGAGCGAGAATAGTA 57.647 39.130 0.00 0.00 0.00 1.82
2469 2814 3.914426 ACCCATTTGAGCGAGAATAGT 57.086 42.857 0.00 0.00 0.00 2.12
2470 2815 4.635765 TGAAACCCATTTGAGCGAGAATAG 59.364 41.667 0.00 0.00 0.00 1.73
2471 2816 4.584874 TGAAACCCATTTGAGCGAGAATA 58.415 39.130 0.00 0.00 0.00 1.75
2472 2817 3.420893 TGAAACCCATTTGAGCGAGAAT 58.579 40.909 0.00 0.00 0.00 2.40
2473 2818 2.857483 TGAAACCCATTTGAGCGAGAA 58.143 42.857 0.00 0.00 0.00 2.87
2474 2819 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
2475 2820 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
2476 2821 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
2477 2822 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
2488 2833 3.136626 AGCCAGTCCCATAGGTATGAAAC 59.863 47.826 0.00 0.00 35.75 2.78
2489 2834 3.393687 AGCCAGTCCCATAGGTATGAAA 58.606 45.455 0.00 0.00 35.75 2.69
2490 2835 3.060479 AGCCAGTCCCATAGGTATGAA 57.940 47.619 0.00 0.00 35.75 2.57
2491 2836 2.795291 AGCCAGTCCCATAGGTATGA 57.205 50.000 0.00 0.00 35.75 2.15
2492 2837 3.511477 ACTAGCCAGTCCCATAGGTATG 58.489 50.000 0.00 0.00 0.00 2.39
2493 2838 3.925261 ACTAGCCAGTCCCATAGGTAT 57.075 47.619 0.00 0.00 0.00 2.73
2494 2839 3.700863 AACTAGCCAGTCCCATAGGTA 57.299 47.619 0.00 0.00 32.29 3.08
2495 2840 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
2496 2841 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
2497 2842 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
2498 2843 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
2499 2844 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
2500 2845 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
2501 2846 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
2502 2847 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
2503 2848 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
2504 2849 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
2505 2850 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
2506 2851 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
2507 2852 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
2508 2853 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
2509 2854 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
2510 2855 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
2511 2856 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
2512 2857 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
2513 2858 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
2514 2859 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
2525 2870 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
2526 2871 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
2527 2872 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
2528 2873 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
2529 2874 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
2530 2875 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
2531 2876 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
2532 2877 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
2533 2878 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
2534 2879 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
2535 2880 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
2536 2881 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
2537 2882 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
2538 2883 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
2539 2884 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
2540 2885 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
2541 2886 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
2542 2887 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
2543 2888 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
2544 2889 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
2545 2890 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
2546 2891 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
2547 2892 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
2548 2893 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
2549 2894 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
2550 2895 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
2551 2896 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
2560 2905 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
2561 2906 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
2562 2907 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
2563 2908 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
2579 2924 2.588620 ACTCCGCCTATGTCTTCTAGG 58.411 52.381 0.00 0.00 39.06 3.02
2580 2925 3.381908 ACAACTCCGCCTATGTCTTCTAG 59.618 47.826 0.00 0.00 0.00 2.43
2581 2926 3.362706 ACAACTCCGCCTATGTCTTCTA 58.637 45.455 0.00 0.00 0.00 2.10
2582 2927 2.180276 ACAACTCCGCCTATGTCTTCT 58.820 47.619 0.00 0.00 0.00 2.85
2583 2928 2.673368 CAACAACTCCGCCTATGTCTTC 59.327 50.000 0.00 0.00 0.00 2.87
2584 2929 2.038557 ACAACAACTCCGCCTATGTCTT 59.961 45.455 0.00 0.00 0.00 3.01
2585 2930 1.623811 ACAACAACTCCGCCTATGTCT 59.376 47.619 0.00 0.00 0.00 3.41
2586 2931 2.094762 ACAACAACTCCGCCTATGTC 57.905 50.000 0.00 0.00 0.00 3.06
2587 2932 2.829720 TCTACAACAACTCCGCCTATGT 59.170 45.455 0.00 0.00 0.00 2.29
2588 2933 3.520290 TCTACAACAACTCCGCCTATG 57.480 47.619 0.00 0.00 0.00 2.23
2589 2934 3.451178 ACATCTACAACAACTCCGCCTAT 59.549 43.478 0.00 0.00 0.00 2.57
2590 2935 2.829720 ACATCTACAACAACTCCGCCTA 59.170 45.455 0.00 0.00 0.00 3.93
2591 2936 1.623811 ACATCTACAACAACTCCGCCT 59.376 47.619 0.00 0.00 0.00 5.52
2592 2937 2.094762 ACATCTACAACAACTCCGCC 57.905 50.000 0.00 0.00 0.00 6.13
2593 2938 5.796350 ATTAACATCTACAACAACTCCGC 57.204 39.130 0.00 0.00 0.00 5.54
2671 3016 6.294508 CCTCCGTTCCAAATCACATTAAGTTT 60.295 38.462 0.00 0.00 0.00 2.66
2723 3069 9.260002 AGGCAATTAACTGTATTTTGAAACTTG 57.740 29.630 0.00 0.00 0.00 3.16
2736 3082 6.062095 ACTCTGTGTAAAGGCAATTAACTGT 58.938 36.000 0.00 0.00 0.00 3.55
2938 3294 7.931407 TCATAGTTCATGAAATGTTAGCGGTAT 59.069 33.333 18.22 0.00 46.80 2.73
3027 3383 5.163784 CGCATCTTTCACATCAAGATCAGTT 60.164 40.000 0.00 0.00 38.67 3.16
3051 3407 1.604278 GAGCTTACATTTCGGGCATCC 59.396 52.381 0.00 0.00 0.00 3.51
3086 3442 9.273016 TCTGTAATTCTACTAAAATATGCTGCC 57.727 33.333 0.00 0.00 0.00 4.85
3158 3514 7.722363 TCTAATCAAATATCTCCGTACTTGCA 58.278 34.615 0.00 0.00 0.00 4.08
3191 3547 0.463654 AGCAGCCAAGAAACACGACA 60.464 50.000 0.00 0.00 0.00 4.35
3195 3551 1.024271 TCACAGCAGCCAAGAAACAC 58.976 50.000 0.00 0.00 0.00 3.32
3215 3571 4.718961 ACTTGGTATGAACAGCAAACTCT 58.281 39.130 0.00 0.00 35.64 3.24
3261 3617 1.771255 AGCTGGACTGAGAAAACCTGT 59.229 47.619 0.00 0.00 0.00 4.00
3435 3796 8.122472 ACTTCCTGAAAAACTGAGAAAAGAAA 57.878 30.769 0.00 0.00 0.00 2.52
3465 3827 4.000557 GCATCCACGTATGCGGCG 62.001 66.667 8.39 0.51 42.57 6.46
3480 3842 2.920912 AAGGGGTTCGAGACGGCA 60.921 61.111 0.00 0.00 0.00 5.69
3501 3863 1.195115 CGATCTTCTTCCCTGGGACA 58.805 55.000 16.85 1.53 0.00 4.02
3628 3993 0.958382 TTAAGGTGGAAAGCGCGCAT 60.958 50.000 35.10 20.88 0.00 4.73
3632 3997 0.521735 CCAGTTAAGGTGGAAAGCGC 59.478 55.000 0.00 0.00 37.23 5.92
3633 3998 0.521735 GCCAGTTAAGGTGGAAAGCG 59.478 55.000 7.82 0.00 37.23 4.68
3649 4014 4.274794 TGGAGGTAAAGATAGGTAGCCA 57.725 45.455 0.00 0.00 0.00 4.75
3653 4018 7.504926 ACAACAATGGAGGTAAAGATAGGTA 57.495 36.000 0.00 0.00 0.00 3.08
3674 4039 7.616313 TGTCCAACATACATGTAGTGATACAA 58.384 34.615 11.91 0.00 40.80 2.41
3683 4048 7.903145 ACTAGTTCTTGTCCAACATACATGTA 58.097 34.615 8.27 8.27 40.80 2.29
3685 4050 7.672983 AACTAGTTCTTGTCCAACATACATG 57.327 36.000 1.12 0.00 0.00 3.21
3753 4118 3.893326 GGAACCAAGGCATAATGCTTT 57.107 42.857 0.00 0.00 43.75 3.51
3769 4134 2.489722 GCACTGAATTGGAGAAGGGAAC 59.510 50.000 0.00 0.00 0.00 3.62
3817 4183 1.081892 CCAAGCAGACGATGGAAGTG 58.918 55.000 0.00 0.00 36.27 3.16
3880 4369 0.808755 CATCAGCAGCAGCATTCACA 59.191 50.000 3.17 0.00 45.49 3.58
3935 4426 4.081862 CCAAATACCTGTCGACTTCACCTA 60.082 45.833 17.92 0.00 0.00 3.08
3941 4432 3.270877 GCATCCAAATACCTGTCGACTT 58.729 45.455 17.92 3.63 0.00 3.01
3944 4435 2.627945 GTGCATCCAAATACCTGTCGA 58.372 47.619 0.00 0.00 0.00 4.20
4008 4499 9.965824 ATACGGAAGGAGCATTAATTTATTTTG 57.034 29.630 0.00 0.00 0.00 2.44
4018 4509 8.918202 ATATTTTTGATACGGAAGGAGCATTA 57.082 30.769 0.00 0.00 41.85 1.90
4022 4513 8.603242 TCTTATATTTTTGATACGGAAGGAGC 57.397 34.615 0.00 0.00 0.00 4.70
4057 4548 5.815740 ACGTTTTCTGATACAAAGAGTGTGT 59.184 36.000 0.00 0.00 41.89 3.72
4058 4549 6.287107 ACGTTTTCTGATACAAAGAGTGTG 57.713 37.500 0.00 0.00 41.89 3.82
4074 4565 9.012448 CCCCGTATCAAAATATAAAACGTTTTC 57.988 33.333 28.31 9.63 0.00 2.29
4079 4570 6.484308 ACTCCCCCGTATCAAAATATAAAACG 59.516 38.462 0.00 0.00 0.00 3.60
4153 4645 5.308237 ACCAAGATCAGGTCAAGTCTAAGTT 59.692 40.000 4.17 0.00 32.90 2.66
4211 4703 6.129561 CGGTTTTGCGTTTAGAAAGTATTGTG 60.130 38.462 0.00 0.00 0.00 3.33
4223 4715 0.304098 CACGTCCGGTTTTGCGTTTA 59.696 50.000 0.00 0.00 35.25 2.01
4295 4787 2.167075 TGAGATGAGAAAGCATCGCAGA 59.833 45.455 6.68 0.00 45.73 4.26
4343 4852 4.016666 AGGAGAAAATGGGAGAGAGAGAGA 60.017 45.833 0.00 0.00 0.00 3.10
4344 4853 4.289245 AGGAGAAAATGGGAGAGAGAGAG 58.711 47.826 0.00 0.00 0.00 3.20
4386 4895 3.610040 TGAGTTGCCAGTGGTACTATG 57.390 47.619 11.74 0.00 0.00 2.23
4399 4909 5.171476 TGCTTCTGAGTTAGTATGAGTTGC 58.829 41.667 0.00 0.00 0.00 4.17
4499 5016 3.787001 GCCGGTTGAGGAGGAGGG 61.787 72.222 1.90 0.00 0.00 4.30
4506 5023 1.971695 GAACCTTGGCCGGTTGAGG 60.972 63.158 18.68 12.50 46.85 3.86
4507 5024 0.537371 AAGAACCTTGGCCGGTTGAG 60.537 55.000 18.68 1.73 46.85 3.02
4508 5025 0.536460 GAAGAACCTTGGCCGGTTGA 60.536 55.000 18.68 0.00 46.85 3.18
4509 5026 0.537371 AGAAGAACCTTGGCCGGTTG 60.537 55.000 18.68 0.00 46.85 3.77
4511 5028 0.250770 GAAGAAGAACCTTGGCCGGT 60.251 55.000 1.90 0.00 39.48 5.28
4516 5033 2.354203 CGGAGGAGAAGAAGAACCTTGG 60.354 54.545 0.00 0.00 32.53 3.61
4540 5057 4.194720 GCTCGTCCGGACATCGCT 62.195 66.667 32.80 0.00 37.59 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.