Multiple sequence alignment - TraesCS5B01G333500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G333500 chr5B 100.000 2965 0 0 1 2965 517416608 517419572 0.000000e+00 5476.0
1 TraesCS5B01G333500 chr5B 80.921 760 113 15 2102 2849 577849861 577849122 3.320000e-159 571.0
2 TraesCS5B01G333500 chr5B 80.679 766 117 18 2098 2849 474526959 474527707 1.540000e-157 566.0
3 TraesCS5B01G333500 chr5B 79.358 654 84 30 1208 1837 517215784 517216410 2.130000e-111 412.0
4 TraesCS5B01G333500 chr5B 91.525 118 9 1 2848 2965 103490150 103490034 8.500000e-36 161.0
5 TraesCS5B01G333500 chr5A 88.807 2028 134 38 866 2849 543567659 543569637 0.000000e+00 2401.0
6 TraesCS5B01G333500 chr5A 88.508 496 46 4 295 787 543567171 543567658 9.150000e-165 590.0
7 TraesCS5B01G333500 chr5A 78.679 666 97 17 2193 2846 679122481 679123113 4.600000e-108 401.0
8 TraesCS5B01G333500 chr5A 78.474 511 71 25 1208 1685 542063103 542063607 6.210000e-77 298.0
9 TraesCS5B01G333500 chr5A 78.806 335 48 14 1208 1529 643297827 643298151 1.390000e-48 204.0
10 TraesCS5B01G333500 chr5D 94.721 1004 37 5 911 1898 428238140 428239143 0.000000e+00 1546.0
11 TraesCS5B01G333500 chr5D 87.885 974 95 9 1888 2849 428241610 428242572 0.000000e+00 1123.0
12 TraesCS5B01G333500 chr5D 81.111 900 126 23 2102 2965 297227986 297227095 0.000000e+00 680.0
13 TraesCS5B01G333500 chr5D 91.093 494 34 4 293 785 428237323 428237807 0.000000e+00 660.0
14 TraesCS5B01G333500 chr5D 78.364 758 122 28 2101 2846 347015188 347014461 1.250000e-123 453.0
15 TraesCS5B01G333500 chr5D 92.096 291 23 0 1 291 155105343 155105633 7.650000e-111 411.0
16 TraesCS5B01G333500 chr5D 84.400 250 26 7 1589 1837 427582446 427582683 1.780000e-57 233.0
17 TraesCS5B01G333500 chr5D 94.898 98 3 2 772 868 361646230 361646134 5.120000e-33 152.0
18 TraesCS5B01G333500 chr5D 76.763 241 34 9 1208 1431 427569041 427569276 6.720000e-22 115.0
19 TraesCS5B01G333500 chr2D 82.315 769 109 19 2094 2849 481061923 481061169 2.490000e-180 641.0
20 TraesCS5B01G333500 chr2D 84.615 650 79 11 2205 2841 619420569 619421210 6.980000e-176 627.0
21 TraesCS5B01G333500 chr2D 92.096 291 23 0 1 291 269158391 269158681 7.650000e-111 411.0
22 TraesCS5B01G333500 chr2D 92.096 291 23 0 1 291 318571898 318571608 7.650000e-111 411.0
23 TraesCS5B01G333500 chr2D 90.970 299 26 1 1 298 299346508 299346806 4.600000e-108 401.0
24 TraesCS5B01G333500 chr3D 83.121 705 113 5 2114 2813 186934138 186934841 3.220000e-179 638.0
25 TraesCS5B01G333500 chr3D 91.611 298 25 0 1 298 346717453 346717156 2.130000e-111 412.0
26 TraesCS5B01G333500 chr3D 95.146 103 4 1 780 881 71371432 71371534 8.500000e-36 161.0
27 TraesCS5B01G333500 chr3D 93.333 105 6 1 2862 2965 86366325 86366429 1.420000e-33 154.0
28 TraesCS5B01G333500 chr1D 83.969 655 79 15 2206 2849 462749591 462748952 3.270000e-169 604.0
29 TraesCS5B01G333500 chr1D 91.497 294 25 0 1 294 188118084 188117791 3.560000e-109 405.0
30 TraesCS5B01G333500 chr1D 92.523 107 7 1 2860 2965 462748900 462748794 5.120000e-33 152.0
31 TraesCS5B01G333500 chr6A 83.257 657 90 12 2206 2847 13056653 13056002 1.180000e-163 586.0
32 TraesCS5B01G333500 chr6A 93.333 105 6 1 2862 2965 13055947 13055843 1.420000e-33 154.0
33 TraesCS5B01G333500 chr2B 81.328 723 102 25 2137 2844 7573198 7572494 9.280000e-155 556.0
34 TraesCS5B01G333500 chr2B 80.988 668 99 17 2194 2849 531565166 531565817 3.410000e-139 505.0
35 TraesCS5B01G333500 chr7B 81.940 670 102 12 2194 2849 118825031 118824367 1.550000e-152 549.0
36 TraesCS5B01G333500 chr7B 96.809 94 3 0 778 871 8925272 8925179 1.100000e-34 158.0
37 TraesCS5B01G333500 chr4D 83.106 586 78 10 2272 2846 474944354 474944929 5.670000e-142 514.0
38 TraesCS5B01G333500 chr4D 91.753 291 24 0 1 291 209695055 209695345 3.560000e-109 405.0
39 TraesCS5B01G333500 chr4D 89.320 103 4 1 2754 2849 16723839 16723737 4.010000e-24 122.0
40 TraesCS5B01G333500 chr7D 79.781 732 127 17 2088 2813 452277270 452276554 2.040000e-141 512.0
41 TraesCS5B01G333500 chr7D 85.906 298 32 4 2560 2849 186832698 186832403 2.870000e-80 309.0
42 TraesCS5B01G333500 chr7D 90.654 107 8 2 2860 2965 57700840 57700735 1.110000e-29 141.0
43 TraesCS5B01G333500 chr6D 91.837 294 24 0 1 294 216104514 216104221 7.650000e-111 411.0
44 TraesCS5B01G333500 chr6D 91.753 291 24 0 1 291 215330258 215330548 3.560000e-109 405.0
45 TraesCS5B01G333500 chr1A 77.910 335 49 22 1208 1528 86559493 86559816 5.050000e-43 185.0
46 TraesCS5B01G333500 chr2A 94.286 105 5 1 2862 2965 676416291 676416395 3.060000e-35 159.0
47 TraesCS5B01G333500 chr2A 97.802 91 2 0 781 871 607842531 607842621 1.100000e-34 158.0
48 TraesCS5B01G333500 chr2A 91.667 108 7 2 2858 2964 758680931 758680825 6.620000e-32 148.0
49 TraesCS5B01G333500 chr3B 97.802 91 2 0 783 873 264013066 264012976 1.100000e-34 158.0
50 TraesCS5B01G333500 chr4A 94.898 98 4 1 777 874 456399196 456399100 5.120000e-33 152.0
51 TraesCS5B01G333500 chr3A 93.269 104 6 1 2862 2964 75155665 75155562 5.120000e-33 152.0
52 TraesCS5B01G333500 chr7A 93.204 103 5 2 784 885 9657381 9657482 1.840000e-32 150.0
53 TraesCS5B01G333500 chr7A 100.000 31 0 0 2069 2099 105171237 105171207 1.150000e-04 58.4
54 TraesCS5B01G333500 chr6B 93.269 104 2 4 779 879 617049603 617049704 6.620000e-32 148.0
55 TraesCS5B01G333500 chr6B 90.991 111 6 4 784 891 42774575 42774684 2.380000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G333500 chr5B 517416608 517419572 2964 False 5476.000000 5476 100.0000 1 2965 1 chr5B.!!$F3 2964
1 TraesCS5B01G333500 chr5B 577849122 577849861 739 True 571.000000 571 80.9210 2102 2849 1 chr5B.!!$R2 747
2 TraesCS5B01G333500 chr5B 474526959 474527707 748 False 566.000000 566 80.6790 2098 2849 1 chr5B.!!$F1 751
3 TraesCS5B01G333500 chr5B 517215784 517216410 626 False 412.000000 412 79.3580 1208 1837 1 chr5B.!!$F2 629
4 TraesCS5B01G333500 chr5A 543567171 543569637 2466 False 1495.500000 2401 88.6575 295 2849 2 chr5A.!!$F4 2554
5 TraesCS5B01G333500 chr5A 679122481 679123113 632 False 401.000000 401 78.6790 2193 2846 1 chr5A.!!$F3 653
6 TraesCS5B01G333500 chr5A 542063103 542063607 504 False 298.000000 298 78.4740 1208 1685 1 chr5A.!!$F1 477
7 TraesCS5B01G333500 chr5D 428237323 428242572 5249 False 1109.666667 1546 91.2330 293 2849 3 chr5D.!!$F4 2556
8 TraesCS5B01G333500 chr5D 297227095 297227986 891 True 680.000000 680 81.1110 2102 2965 1 chr5D.!!$R1 863
9 TraesCS5B01G333500 chr5D 347014461 347015188 727 True 453.000000 453 78.3640 2101 2846 1 chr5D.!!$R2 745
10 TraesCS5B01G333500 chr2D 481061169 481061923 754 True 641.000000 641 82.3150 2094 2849 1 chr2D.!!$R2 755
11 TraesCS5B01G333500 chr2D 619420569 619421210 641 False 627.000000 627 84.6150 2205 2841 1 chr2D.!!$F3 636
12 TraesCS5B01G333500 chr3D 186934138 186934841 703 False 638.000000 638 83.1210 2114 2813 1 chr3D.!!$F3 699
13 TraesCS5B01G333500 chr1D 462748794 462749591 797 True 378.000000 604 88.2460 2206 2965 2 chr1D.!!$R2 759
14 TraesCS5B01G333500 chr6A 13055843 13056653 810 True 370.000000 586 88.2950 2206 2965 2 chr6A.!!$R1 759
15 TraesCS5B01G333500 chr2B 7572494 7573198 704 True 556.000000 556 81.3280 2137 2844 1 chr2B.!!$R1 707
16 TraesCS5B01G333500 chr2B 531565166 531565817 651 False 505.000000 505 80.9880 2194 2849 1 chr2B.!!$F1 655
17 TraesCS5B01G333500 chr7B 118824367 118825031 664 True 549.000000 549 81.9400 2194 2849 1 chr7B.!!$R2 655
18 TraesCS5B01G333500 chr4D 474944354 474944929 575 False 514.000000 514 83.1060 2272 2846 1 chr4D.!!$F2 574
19 TraesCS5B01G333500 chr7D 452276554 452277270 716 True 512.000000 512 79.7810 2088 2813 1 chr7D.!!$R3 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.029300 GGCGCAATGTCGTGCATATT 59.971 50.0 10.83 0.0 45.19 1.28 F
518 520 0.036388 AATGACAAGGACCGCACGAT 60.036 50.0 0.00 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1736 2088 0.179234 GCCCCTTCTCAACTCCTAGC 59.821 60.0 0.0 0.0 0.0 3.42 R
2326 5186 0.249955 GGGGTGGATTTGGTGCAATG 59.750 55.0 0.0 0.0 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.810486 CCAACGACGAGACCAAGAC 58.190 57.895 0.00 0.00 0.00 3.01
19 20 0.666577 CCAACGACGAGACCAAGACC 60.667 60.000 0.00 0.00 0.00 3.85
20 21 1.002250 CAACGACGAGACCAAGACCG 61.002 60.000 0.00 0.00 0.00 4.79
21 22 2.504244 CGACGAGACCAAGACCGC 60.504 66.667 0.00 0.00 0.00 5.68
22 23 2.963371 GACGAGACCAAGACCGCT 59.037 61.111 0.00 0.00 0.00 5.52
23 24 1.289380 GACGAGACCAAGACCGCTT 59.711 57.895 0.00 0.00 33.74 4.68
24 25 0.524862 GACGAGACCAAGACCGCTTA 59.475 55.000 0.00 0.00 31.81 3.09
25 26 0.243095 ACGAGACCAAGACCGCTTAC 59.757 55.000 0.00 0.00 31.81 2.34
26 27 0.797249 CGAGACCAAGACCGCTTACG 60.797 60.000 0.00 0.00 39.67 3.18
36 37 2.108362 CGCTTACGGATCCCCACC 59.892 66.667 6.06 0.00 34.97 4.61
37 38 2.432300 CGCTTACGGATCCCCACCT 61.432 63.158 6.06 0.00 34.97 4.00
38 39 1.912971 GCTTACGGATCCCCACCTT 59.087 57.895 6.06 0.00 0.00 3.50
39 40 0.255033 GCTTACGGATCCCCACCTTT 59.745 55.000 6.06 0.00 0.00 3.11
40 41 1.487558 GCTTACGGATCCCCACCTTTA 59.512 52.381 6.06 0.00 0.00 1.85
41 42 2.105993 GCTTACGGATCCCCACCTTTAT 59.894 50.000 6.06 0.00 0.00 1.40
42 43 3.806157 GCTTACGGATCCCCACCTTTATC 60.806 52.174 6.06 0.00 0.00 1.75
43 44 1.887797 ACGGATCCCCACCTTTATCA 58.112 50.000 6.06 0.00 0.00 2.15
44 45 2.201830 ACGGATCCCCACCTTTATCAA 58.798 47.619 6.06 0.00 0.00 2.57
45 46 2.783510 ACGGATCCCCACCTTTATCAAT 59.216 45.455 6.06 0.00 0.00 2.57
46 47 3.977999 ACGGATCCCCACCTTTATCAATA 59.022 43.478 6.06 0.00 0.00 1.90
47 48 4.202430 ACGGATCCCCACCTTTATCAATAC 60.202 45.833 6.06 0.00 0.00 1.89
48 49 4.041691 CGGATCCCCACCTTTATCAATACT 59.958 45.833 6.06 0.00 0.00 2.12
49 50 5.456186 CGGATCCCCACCTTTATCAATACTT 60.456 44.000 6.06 0.00 0.00 2.24
50 51 6.004574 GGATCCCCACCTTTATCAATACTTC 58.995 44.000 0.00 0.00 0.00 3.01
51 52 6.410388 GGATCCCCACCTTTATCAATACTTCA 60.410 42.308 0.00 0.00 0.00 3.02
52 53 6.590656 TCCCCACCTTTATCAATACTTCAT 57.409 37.500 0.00 0.00 0.00 2.57
53 54 6.601332 TCCCCACCTTTATCAATACTTCATC 58.399 40.000 0.00 0.00 0.00 2.92
54 55 6.389869 TCCCCACCTTTATCAATACTTCATCT 59.610 38.462 0.00 0.00 0.00 2.90
55 56 7.570982 TCCCCACCTTTATCAATACTTCATCTA 59.429 37.037 0.00 0.00 0.00 1.98
56 57 8.386264 CCCCACCTTTATCAATACTTCATCTAT 58.614 37.037 0.00 0.00 0.00 1.98
98 99 9.826574 ATTGCATTATCATATTCTTGCTTGTTT 57.173 25.926 0.00 0.00 0.00 2.83
99 100 8.861033 TGCATTATCATATTCTTGCTTGTTTC 57.139 30.769 0.00 0.00 0.00 2.78
100 101 8.689061 TGCATTATCATATTCTTGCTTGTTTCT 58.311 29.630 0.00 0.00 0.00 2.52
101 102 9.178427 GCATTATCATATTCTTGCTTGTTTCTC 57.822 33.333 0.00 0.00 0.00 2.87
106 107 8.975410 TCATATTCTTGCTTGTTTCTCAATTG 57.025 30.769 0.00 0.00 35.35 2.32
107 108 8.795513 TCATATTCTTGCTTGTTTCTCAATTGA 58.204 29.630 8.12 8.12 35.35 2.57
108 109 9.582431 CATATTCTTGCTTGTTTCTCAATTGAT 57.418 29.630 8.96 0.00 35.35 2.57
110 111 7.703298 TTCTTGCTTGTTTCTCAATTGATTG 57.297 32.000 8.96 0.00 39.10 2.67
111 112 5.693104 TCTTGCTTGTTTCTCAATTGATTGC 59.307 36.000 8.96 6.55 37.68 3.56
112 113 4.946445 TGCTTGTTTCTCAATTGATTGCA 58.054 34.783 8.96 8.83 37.68 4.08
113 114 4.986034 TGCTTGTTTCTCAATTGATTGCAG 59.014 37.500 8.96 0.00 37.68 4.41
114 115 4.387862 GCTTGTTTCTCAATTGATTGCAGG 59.612 41.667 8.96 7.68 37.68 4.85
115 116 5.775686 CTTGTTTCTCAATTGATTGCAGGA 58.224 37.500 8.96 0.00 37.68 3.86
116 117 5.787953 TGTTTCTCAATTGATTGCAGGAA 57.212 34.783 8.96 5.08 37.68 3.36
117 118 6.349243 TGTTTCTCAATTGATTGCAGGAAT 57.651 33.333 8.96 0.00 37.68 3.01
118 119 7.465353 TGTTTCTCAATTGATTGCAGGAATA 57.535 32.000 8.96 0.00 37.68 1.75
119 120 7.541162 TGTTTCTCAATTGATTGCAGGAATAG 58.459 34.615 8.96 0.00 37.68 1.73
120 121 7.394077 TGTTTCTCAATTGATTGCAGGAATAGA 59.606 33.333 8.96 0.00 37.68 1.98
121 122 6.932356 TCTCAATTGATTGCAGGAATAGAC 57.068 37.500 8.96 0.00 37.68 2.59
122 123 5.824624 TCTCAATTGATTGCAGGAATAGACC 59.175 40.000 8.96 0.00 37.68 3.85
123 124 5.759059 TCAATTGATTGCAGGAATAGACCT 58.241 37.500 3.38 0.00 37.36 3.85
124 125 5.824624 TCAATTGATTGCAGGAATAGACCTC 59.175 40.000 3.38 0.00 35.98 3.85
125 126 3.845781 TGATTGCAGGAATAGACCTCC 57.154 47.619 0.00 0.00 38.32 4.30
126 127 3.114606 TGATTGCAGGAATAGACCTCCA 58.885 45.455 0.00 0.00 38.32 3.86
127 128 3.718434 TGATTGCAGGAATAGACCTCCAT 59.282 43.478 0.00 0.00 38.32 3.41
128 129 4.907269 TGATTGCAGGAATAGACCTCCATA 59.093 41.667 0.00 0.00 38.32 2.74
129 130 4.963318 TTGCAGGAATAGACCTCCATAG 57.037 45.455 0.00 0.00 38.32 2.23
130 131 3.928754 TGCAGGAATAGACCTCCATAGT 58.071 45.455 0.00 0.00 38.32 2.12
131 132 3.898123 TGCAGGAATAGACCTCCATAGTC 59.102 47.826 0.00 0.00 38.32 2.59
132 133 3.898123 GCAGGAATAGACCTCCATAGTCA 59.102 47.826 0.00 0.00 38.32 3.41
133 134 4.021544 GCAGGAATAGACCTCCATAGTCAG 60.022 50.000 0.00 0.00 38.32 3.51
134 135 4.526262 CAGGAATAGACCTCCATAGTCAGG 59.474 50.000 0.00 0.00 38.32 3.86
135 136 4.171044 AGGAATAGACCTCCATAGTCAGGT 59.829 45.833 0.00 0.00 46.35 4.00
136 137 4.902448 GGAATAGACCTCCATAGTCAGGTT 59.098 45.833 0.00 0.00 43.52 3.50
137 138 5.221541 GGAATAGACCTCCATAGTCAGGTTG 60.222 48.000 0.00 0.00 43.52 3.77
138 139 3.474798 AGACCTCCATAGTCAGGTTGA 57.525 47.619 0.00 0.00 43.52 3.18
139 140 4.000928 AGACCTCCATAGTCAGGTTGAT 57.999 45.455 0.00 0.00 43.52 2.57
140 141 3.964031 AGACCTCCATAGTCAGGTTGATC 59.036 47.826 0.00 0.00 43.52 2.92
141 142 2.695666 ACCTCCATAGTCAGGTTGATCG 59.304 50.000 0.00 0.00 40.35 3.69
142 143 2.695666 CCTCCATAGTCAGGTTGATCGT 59.304 50.000 0.00 0.00 0.00 3.73
143 144 3.491619 CCTCCATAGTCAGGTTGATCGTG 60.492 52.174 0.00 0.00 0.00 4.35
144 145 2.159099 TCCATAGTCAGGTTGATCGTGC 60.159 50.000 0.00 0.00 32.68 5.34
145 146 2.159043 CCATAGTCAGGTTGATCGTGCT 60.159 50.000 0.00 0.00 32.68 4.40
146 147 2.941453 TAGTCAGGTTGATCGTGCTC 57.059 50.000 0.00 0.00 32.68 4.26
147 148 0.247736 AGTCAGGTTGATCGTGCTCC 59.752 55.000 0.00 0.00 32.68 4.70
148 149 1.078759 GTCAGGTTGATCGTGCTCCG 61.079 60.000 0.00 0.00 38.13 4.63
149 150 1.811266 CAGGTTGATCGTGCTCCGG 60.811 63.158 0.00 0.00 37.11 5.14
150 151 3.195698 GGTTGATCGTGCTCCGGC 61.196 66.667 0.00 0.00 37.11 6.13
151 152 3.554692 GTTGATCGTGCTCCGGCG 61.555 66.667 0.00 0.00 42.25 6.46
152 153 4.063967 TTGATCGTGCTCCGGCGT 62.064 61.111 6.01 0.00 42.25 5.68
153 154 4.794439 TGATCGTGCTCCGGCGTG 62.794 66.667 6.01 0.00 42.25 5.34
158 159 4.980805 GTGCTCCGGCGTGGTCAA 62.981 66.667 6.01 0.00 42.25 3.18
159 160 4.015406 TGCTCCGGCGTGGTCAAT 62.015 61.111 6.01 0.00 42.25 2.57
160 161 2.185867 GCTCCGGCGTGGTCAATA 59.814 61.111 6.01 0.00 39.52 1.90
161 162 1.448893 GCTCCGGCGTGGTCAATAA 60.449 57.895 6.01 0.00 39.52 1.40
162 163 1.702491 GCTCCGGCGTGGTCAATAAC 61.702 60.000 6.01 0.00 39.52 1.89
175 176 4.508662 GGTCAATAACCTCTCAGAGTTGG 58.491 47.826 0.00 9.66 45.45 3.77
176 177 4.020128 GGTCAATAACCTCTCAGAGTTGGT 60.020 45.833 0.00 10.71 45.45 3.67
177 178 5.513267 GGTCAATAACCTCTCAGAGTTGGTT 60.513 44.000 23.89 23.89 45.45 3.67
178 179 5.998363 GTCAATAACCTCTCAGAGTTGGTTT 59.002 40.000 24.89 15.26 42.14 3.27
179 180 7.159372 GTCAATAACCTCTCAGAGTTGGTTTA 58.841 38.462 24.89 15.92 42.14 2.01
180 181 7.332182 GTCAATAACCTCTCAGAGTTGGTTTAG 59.668 40.741 24.89 17.97 42.14 1.85
181 182 3.686916 ACCTCTCAGAGTTGGTTTAGC 57.313 47.619 0.00 0.00 0.00 3.09
182 183 2.028930 ACCTCTCAGAGTTGGTTTAGCG 60.029 50.000 0.00 0.00 0.00 4.26
183 184 2.231478 CCTCTCAGAGTTGGTTTAGCGA 59.769 50.000 0.00 0.00 0.00 4.93
184 185 3.118956 CCTCTCAGAGTTGGTTTAGCGAT 60.119 47.826 0.00 0.00 0.00 4.58
185 186 4.499183 CTCTCAGAGTTGGTTTAGCGATT 58.501 43.478 0.00 0.00 0.00 3.34
186 187 4.245660 TCTCAGAGTTGGTTTAGCGATTG 58.754 43.478 0.00 0.00 0.00 2.67
187 188 2.742053 TCAGAGTTGGTTTAGCGATTGC 59.258 45.455 0.00 0.00 43.24 3.56
202 203 1.793581 TTGCTAAGGCGCAATGTCG 59.206 52.632 10.83 0.00 44.30 4.35
203 204 0.953471 TTGCTAAGGCGCAATGTCGT 60.953 50.000 10.83 0.00 44.30 4.34
204 205 1.060937 GCTAAGGCGCAATGTCGTG 59.939 57.895 10.83 0.00 0.00 4.35
205 206 1.060937 CTAAGGCGCAATGTCGTGC 59.939 57.895 10.83 0.00 41.75 5.34
206 207 1.634757 CTAAGGCGCAATGTCGTGCA 61.635 55.000 10.83 0.00 45.19 4.57
207 208 1.024046 TAAGGCGCAATGTCGTGCAT 61.024 50.000 10.83 0.00 45.19 3.96
208 209 1.024046 AAGGCGCAATGTCGTGCATA 61.024 50.000 10.83 0.00 45.19 3.14
209 210 0.815213 AGGCGCAATGTCGTGCATAT 60.815 50.000 10.83 0.00 45.19 1.78
210 211 0.029300 GGCGCAATGTCGTGCATATT 59.971 50.000 10.83 0.00 45.19 1.28
211 212 1.533756 GGCGCAATGTCGTGCATATTT 60.534 47.619 10.83 0.00 45.19 1.40
212 213 1.513994 GCGCAATGTCGTGCATATTTG 59.486 47.619 0.30 0.00 45.19 2.32
213 214 2.784505 CGCAATGTCGTGCATATTTGT 58.215 42.857 0.00 0.00 45.19 2.83
214 215 3.787146 GCGCAATGTCGTGCATATTTGTA 60.787 43.478 0.30 0.00 45.19 2.41
215 216 3.961860 CGCAATGTCGTGCATATTTGTAG 59.038 43.478 0.00 0.00 45.19 2.74
216 217 4.494035 CGCAATGTCGTGCATATTTGTAGT 60.494 41.667 0.00 0.00 45.19 2.73
217 218 4.963953 GCAATGTCGTGCATATTTGTAGTC 59.036 41.667 0.00 0.00 44.29 2.59
218 219 5.190342 CAATGTCGTGCATATTTGTAGTCG 58.810 41.667 0.00 0.00 36.67 4.18
219 220 3.183754 TGTCGTGCATATTTGTAGTCGG 58.816 45.455 0.00 0.00 0.00 4.79
220 221 3.119424 TGTCGTGCATATTTGTAGTCGGA 60.119 43.478 0.00 0.00 0.00 4.55
221 222 4.049186 GTCGTGCATATTTGTAGTCGGAT 58.951 43.478 0.00 0.00 0.00 4.18
222 223 4.148348 GTCGTGCATATTTGTAGTCGGATC 59.852 45.833 0.00 0.00 0.00 3.36
223 224 3.119628 CGTGCATATTTGTAGTCGGATCG 59.880 47.826 0.00 0.00 0.00 3.69
224 225 4.049186 GTGCATATTTGTAGTCGGATCGT 58.951 43.478 0.00 0.00 0.00 3.73
225 226 4.506654 GTGCATATTTGTAGTCGGATCGTT 59.493 41.667 0.00 0.00 0.00 3.85
226 227 5.688621 GTGCATATTTGTAGTCGGATCGTTA 59.311 40.000 0.00 0.00 0.00 3.18
227 228 5.918576 TGCATATTTGTAGTCGGATCGTTAG 59.081 40.000 0.00 0.00 0.00 2.34
228 229 5.919141 GCATATTTGTAGTCGGATCGTTAGT 59.081 40.000 0.00 0.00 0.00 2.24
229 230 6.129168 GCATATTTGTAGTCGGATCGTTAGTG 60.129 42.308 0.00 0.00 0.00 2.74
230 231 4.771590 TTTGTAGTCGGATCGTTAGTGT 57.228 40.909 0.00 0.00 0.00 3.55
231 232 4.346734 TTGTAGTCGGATCGTTAGTGTC 57.653 45.455 0.00 0.00 0.00 3.67
232 233 2.349580 TGTAGTCGGATCGTTAGTGTCG 59.650 50.000 0.00 0.00 0.00 4.35
233 234 1.730501 AGTCGGATCGTTAGTGTCGA 58.269 50.000 0.00 0.00 41.45 4.20
234 235 1.664659 AGTCGGATCGTTAGTGTCGAG 59.335 52.381 0.00 0.00 40.57 4.04
235 236 1.396301 GTCGGATCGTTAGTGTCGAGT 59.604 52.381 0.00 0.00 40.57 4.18
236 237 1.662629 TCGGATCGTTAGTGTCGAGTC 59.337 52.381 0.00 0.00 40.57 3.36
237 238 1.267932 CGGATCGTTAGTGTCGAGTCC 60.268 57.143 0.00 0.00 40.57 3.85
238 239 1.741706 GGATCGTTAGTGTCGAGTCCA 59.258 52.381 0.00 0.00 40.57 4.02
239 240 2.477525 GGATCGTTAGTGTCGAGTCCAC 60.478 54.545 0.00 0.00 40.57 4.02
240 241 0.877071 TCGTTAGTGTCGAGTCCACC 59.123 55.000 1.35 0.00 33.20 4.61
241 242 0.453950 CGTTAGTGTCGAGTCCACCG 60.454 60.000 1.35 0.00 33.20 4.94
242 243 0.877071 GTTAGTGTCGAGTCCACCGA 59.123 55.000 1.35 0.00 33.20 4.69
243 244 1.267806 GTTAGTGTCGAGTCCACCGAA 59.732 52.381 1.35 0.00 37.81 4.30
244 245 1.830279 TAGTGTCGAGTCCACCGAAT 58.170 50.000 1.35 0.00 37.81 3.34
245 246 0.526662 AGTGTCGAGTCCACCGAATC 59.473 55.000 1.35 0.00 37.81 2.52
246 247 0.242825 GTGTCGAGTCCACCGAATCA 59.757 55.000 0.00 0.00 37.81 2.57
247 248 0.963225 TGTCGAGTCCACCGAATCAA 59.037 50.000 0.00 0.00 37.81 2.57
248 249 1.548719 TGTCGAGTCCACCGAATCAAT 59.451 47.619 0.00 0.00 37.81 2.57
249 250 2.756207 TGTCGAGTCCACCGAATCAATA 59.244 45.455 0.00 0.00 37.81 1.90
250 251 3.181490 TGTCGAGTCCACCGAATCAATAG 60.181 47.826 0.00 0.00 37.81 1.73
251 252 3.021695 TCGAGTCCACCGAATCAATAGT 58.978 45.455 0.00 0.00 32.54 2.12
252 253 3.446161 TCGAGTCCACCGAATCAATAGTT 59.554 43.478 0.00 0.00 32.54 2.24
253 254 4.641541 TCGAGTCCACCGAATCAATAGTTA 59.358 41.667 0.00 0.00 32.54 2.24
254 255 5.301045 TCGAGTCCACCGAATCAATAGTTAT 59.699 40.000 0.00 0.00 32.54 1.89
255 256 5.629849 CGAGTCCACCGAATCAATAGTTATC 59.370 44.000 0.00 0.00 32.54 1.75
256 257 6.479972 AGTCCACCGAATCAATAGTTATCA 57.520 37.500 0.00 0.00 0.00 2.15
257 258 7.067496 AGTCCACCGAATCAATAGTTATCAT 57.933 36.000 0.00 0.00 0.00 2.45
258 259 7.155328 AGTCCACCGAATCAATAGTTATCATC 58.845 38.462 0.00 0.00 0.00 2.92
259 260 7.015682 AGTCCACCGAATCAATAGTTATCATCT 59.984 37.037 0.00 0.00 0.00 2.90
260 261 7.329717 GTCCACCGAATCAATAGTTATCATCTC 59.670 40.741 0.00 0.00 0.00 2.75
261 262 7.015195 TCCACCGAATCAATAGTTATCATCTCA 59.985 37.037 0.00 0.00 0.00 3.27
262 263 7.821359 CCACCGAATCAATAGTTATCATCTCAT 59.179 37.037 0.00 0.00 0.00 2.90
263 264 8.867935 CACCGAATCAATAGTTATCATCTCATC 58.132 37.037 0.00 0.00 0.00 2.92
264 265 7.757173 ACCGAATCAATAGTTATCATCTCATCG 59.243 37.037 0.00 0.00 0.00 3.84
265 266 7.970614 CCGAATCAATAGTTATCATCTCATCGA 59.029 37.037 0.00 0.00 0.00 3.59
266 267 9.346725 CGAATCAATAGTTATCATCTCATCGAA 57.653 33.333 0.00 0.00 0.00 3.71
280 281 4.515404 CGAAAGATCGGGACACCC 57.485 61.111 0.00 0.00 45.32 4.61
281 282 1.898154 CGAAAGATCGGGACACCCT 59.102 57.895 5.27 0.00 45.32 4.34
282 283 0.179108 CGAAAGATCGGGACACCCTC 60.179 60.000 5.27 0.00 45.32 4.30
283 284 0.179108 GAAAGATCGGGACACCCTCG 60.179 60.000 5.27 0.00 42.67 4.63
284 285 2.240162 AAAGATCGGGACACCCTCGC 62.240 60.000 5.27 0.00 42.67 5.03
285 286 4.222847 GATCGGGACACCCTCGCC 62.223 72.222 5.27 0.00 42.67 5.54
286 287 4.779733 ATCGGGACACCCTCGCCT 62.780 66.667 5.27 0.00 42.67 5.52
289 290 2.043248 GGGACACCCTCGCCTCTA 60.043 66.667 0.00 0.00 41.34 2.43
290 291 1.457831 GGGACACCCTCGCCTCTAT 60.458 63.158 0.00 0.00 41.34 1.98
291 292 0.178970 GGGACACCCTCGCCTCTATA 60.179 60.000 0.00 0.00 41.34 1.31
347 349 8.566260 TCATGCAAATAATCCCAAAAACAAAAG 58.434 29.630 0.00 0.00 0.00 2.27
376 378 3.215151 CGATACCTCAACAGCCTAGAGA 58.785 50.000 0.00 0.00 0.00 3.10
406 408 3.399330 TGCTCAGGGAAAAACTAGAACG 58.601 45.455 0.00 0.00 0.00 3.95
448 450 2.114616 AGGAGGACTAGAAGTGCATGG 58.885 52.381 0.00 0.00 39.19 3.66
495 497 2.490903 GTCAGTTGCATGGCTGAAAGAT 59.509 45.455 14.85 0.00 42.51 2.40
499 501 3.575256 AGTTGCATGGCTGAAAGATTTCA 59.425 39.130 7.71 7.71 44.31 2.69
506 508 5.787953 TGGCTGAAAGATTTCAATGACAA 57.212 34.783 9.16 0.00 45.61 3.18
518 520 0.036388 AATGACAAGGACCGCACGAT 60.036 50.000 0.00 0.00 0.00 3.73
519 521 0.740868 ATGACAAGGACCGCACGATG 60.741 55.000 0.00 0.00 0.00 3.84
526 528 4.373116 ACCGCACGATGAAGCCGT 62.373 61.111 0.00 0.00 41.36 5.68
542 544 2.142319 GCCGTGGCATTCAATGTTTTT 58.858 42.857 5.89 0.00 41.49 1.94
565 567 2.448926 TTGCTCGATTCGGTCTTTCA 57.551 45.000 6.18 0.00 0.00 2.69
572 574 5.390991 GCTCGATTCGGTCTTTCAAGAATTT 60.391 40.000 6.18 0.00 36.68 1.82
580 582 7.442656 TCGGTCTTTCAAGAATTTAGTCTTCT 58.557 34.615 0.00 0.00 35.63 2.85
606 608 6.633500 TTTGACGATCAAATTGGTCTTTCT 57.367 33.333 4.61 0.00 41.02 2.52
621 623 5.299279 TGGTCTTTCTGGTTCTTCATTGTTC 59.701 40.000 0.00 0.00 0.00 3.18
623 625 5.236478 GTCTTTCTGGTTCTTCATTGTTCGA 59.764 40.000 0.00 0.00 0.00 3.71
628 630 5.639506 TCTGGTTCTTCATTGTTCGATCTTC 59.360 40.000 0.00 0.00 0.00 2.87
652 657 8.018537 TCGGTCTTTAGAGGATGATAATTTGA 57.981 34.615 0.00 0.00 0.00 2.69
653 658 8.651389 TCGGTCTTTAGAGGATGATAATTTGAT 58.349 33.333 0.00 0.00 0.00 2.57
654 659 8.930760 CGGTCTTTAGAGGATGATAATTTGATC 58.069 37.037 0.00 0.00 0.00 2.92
655 660 9.225436 GGTCTTTAGAGGATGATAATTTGATCC 57.775 37.037 0.00 0.00 36.63 3.36
691 696 9.471084 AAACCGAATTTCATAAAACCTACTTTG 57.529 29.630 0.00 0.00 0.00 2.77
708 713 8.091449 ACCTACTTTGAAGTCTCATTCTACAAG 58.909 37.037 0.00 0.00 40.37 3.16
787 792 4.377897 ACCAGCACTTTACACAACTACTC 58.622 43.478 0.00 0.00 0.00 2.59
788 793 3.746492 CCAGCACTTTACACAACTACTCC 59.254 47.826 0.00 0.00 0.00 3.85
789 794 3.746492 CAGCACTTTACACAACTACTCCC 59.254 47.826 0.00 0.00 0.00 4.30
790 795 3.646637 AGCACTTTACACAACTACTCCCT 59.353 43.478 0.00 0.00 0.00 4.20
791 796 3.995048 GCACTTTACACAACTACTCCCTC 59.005 47.826 0.00 0.00 0.00 4.30
792 797 4.566987 CACTTTACACAACTACTCCCTCC 58.433 47.826 0.00 0.00 0.00 4.30
793 798 3.257624 ACTTTACACAACTACTCCCTCCG 59.742 47.826 0.00 0.00 0.00 4.63
794 799 2.592102 TACACAACTACTCCCTCCGT 57.408 50.000 0.00 0.00 0.00 4.69
795 800 2.592102 ACACAACTACTCCCTCCGTA 57.408 50.000 0.00 0.00 0.00 4.02
796 801 2.880443 ACACAACTACTCCCTCCGTAA 58.120 47.619 0.00 0.00 0.00 3.18
797 802 3.233507 ACACAACTACTCCCTCCGTAAA 58.766 45.455 0.00 0.00 0.00 2.01
798 803 3.006217 ACACAACTACTCCCTCCGTAAAC 59.994 47.826 0.00 0.00 0.00 2.01
799 804 3.257624 CACAACTACTCCCTCCGTAAACT 59.742 47.826 0.00 0.00 0.00 2.66
800 805 4.460382 CACAACTACTCCCTCCGTAAACTA 59.540 45.833 0.00 0.00 0.00 2.24
801 806 5.047802 CACAACTACTCCCTCCGTAAACTAA 60.048 44.000 0.00 0.00 0.00 2.24
802 807 5.718607 ACAACTACTCCCTCCGTAAACTAAT 59.281 40.000 0.00 0.00 0.00 1.73
803 808 6.891908 ACAACTACTCCCTCCGTAAACTAATA 59.108 38.462 0.00 0.00 0.00 0.98
804 809 7.562821 ACAACTACTCCCTCCGTAAACTAATAT 59.437 37.037 0.00 0.00 0.00 1.28
805 810 9.071276 CAACTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
806 811 9.646522 AACTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
807 812 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
808 813 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
809 814 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
810 815 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
811 816 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
812 817 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
813 818 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
814 819 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
815 820 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
816 821 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
817 822 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
864 869 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
877 882 7.235812 AGTTTACAGAGGGAGTAATTCAGTTCT 59.764 37.037 0.00 0.00 32.07 3.01
892 897 6.554334 TTCAGTTCTGTATTTTACACTGGC 57.446 37.500 0.00 0.00 33.56 4.85
1134 1441 2.358737 CCTTCCCACTCCACGCAC 60.359 66.667 0.00 0.00 0.00 5.34
1248 1555 4.617520 TGCGCGCTGGAGTTGGAA 62.618 61.111 33.29 4.14 0.00 3.53
1572 1912 2.818132 CTGGGGTCGATGGAGCTC 59.182 66.667 4.71 4.71 41.62 4.09
1584 1924 2.188207 GAGCTCGAAAGGAGGGCC 59.812 66.667 0.00 0.00 43.36 5.80
1677 2017 1.931635 AGAAGAAGAGGAAGAGGCGT 58.068 50.000 0.00 0.00 0.00 5.68
1703 2055 4.813526 CGGCGAGTCGGAGTCGTG 62.814 72.222 29.54 20.86 42.66 4.35
1707 2059 2.876219 GAGTCGGAGTCGTGGTCC 59.124 66.667 0.00 0.00 37.69 4.46
1708 2060 1.674980 GAGTCGGAGTCGTGGTCCT 60.675 63.158 0.00 0.00 37.69 3.85
1709 2061 1.924320 GAGTCGGAGTCGTGGTCCTG 61.924 65.000 0.00 0.00 37.69 3.86
1984 4815 3.244770 TGTGTGTTCAGTATTTCCCTCCC 60.245 47.826 0.00 0.00 0.00 4.30
1998 4829 2.092968 TCCCTCCCTCGTGATTTGAATG 60.093 50.000 0.00 0.00 0.00 2.67
2009 4842 7.148918 CCTCGTGATTTGAATGTGAAATGTTTC 60.149 37.037 0.00 0.00 37.69 2.78
2016 4849 5.139727 TGAATGTGAAATGTTTCCAGTCCT 58.860 37.500 15.18 0.00 34.56 3.85
2025 4858 2.105134 TGTTTCCAGTCCTTTTCCGCTA 59.895 45.455 0.00 0.00 0.00 4.26
2040 4873 1.660575 GCTATGTACGCGCGTCCAT 60.661 57.895 36.81 36.81 0.00 3.41
2082 4915 1.928480 TCATCTACTCCCTCCCTCCT 58.072 55.000 0.00 0.00 0.00 3.69
2099 4932 7.311360 CCTCCCTCCTAAAATTCTTGTCTTAGT 60.311 40.741 0.00 0.00 0.00 2.24
2105 4938 7.336931 TCCTAAAATTCTTGTCTTAGTGCATCC 59.663 37.037 0.00 0.00 0.00 3.51
2135 4968 0.751643 GCCTCAAACCCGCCACATAT 60.752 55.000 0.00 0.00 0.00 1.78
2142 4975 4.562425 CCGCCACATATGCCCGGT 62.562 66.667 16.68 0.00 35.59 5.28
2144 4977 2.191908 GCCACATATGCCCGGTCA 59.808 61.111 1.58 0.00 0.00 4.02
2262 5101 5.185454 CAGCCCAAATATGAAGCGGATATA 58.815 41.667 0.00 0.00 32.72 0.86
2317 5177 2.202703 GGATCCGACAACCCGACG 60.203 66.667 0.00 0.00 0.00 5.12
2352 5216 0.409484 CCAAATCCACCCCCAAGACT 59.591 55.000 0.00 0.00 0.00 3.24
2411 5276 2.976350 TGTCGTCCGTCTCGCAGT 60.976 61.111 0.00 0.00 0.00 4.40
2414 5279 2.254350 CGTCCGTCTCGCAGTTCA 59.746 61.111 0.00 0.00 0.00 3.18
2507 5402 4.508128 CGTGGGGGATGTCGTCGG 62.508 72.222 0.00 0.00 0.00 4.79
2594 5507 2.489329 ACACATTCTCTGGCCGATTTTG 59.511 45.455 0.00 0.00 0.00 2.44
2595 5508 1.474077 ACATTCTCTGGCCGATTTTGC 59.526 47.619 0.00 0.00 0.00 3.68
2598 5512 1.138247 CTCTGGCCGATTTTGCTGC 59.862 57.895 0.00 0.00 0.00 5.25
2628 5542 3.160679 AGGGAAAACAATGGACTCTGG 57.839 47.619 0.00 0.00 0.00 3.86
2635 5549 1.701847 ACAATGGACTCTGGTGCTTCT 59.298 47.619 0.00 0.00 34.78 2.85
2681 5597 4.488879 GGAGCTTGACCAAATGATTGAAC 58.511 43.478 0.00 0.00 38.94 3.18
2717 5633 2.147958 CCTCGGATTCGGACAAACAAA 58.852 47.619 0.00 0.00 36.95 2.83
2777 5696 1.488812 ACCGGCAAGTGGAGCATATTA 59.511 47.619 0.00 0.00 0.00 0.98
2849 5775 0.890996 GCAAAGCTACTGCACAGGGT 60.891 55.000 14.26 0.00 42.74 4.34
2850 5776 1.609208 CAAAGCTACTGCACAGGGTT 58.391 50.000 2.21 0.00 42.74 4.11
2852 5778 1.897560 AAGCTACTGCACAGGGTTTC 58.102 50.000 2.21 0.00 42.74 2.78
2853 5779 0.764890 AGCTACTGCACAGGGTTTCA 59.235 50.000 2.21 0.00 42.74 2.69
2854 5780 0.875059 GCTACTGCACAGGGTTTCAC 59.125 55.000 2.21 0.00 39.41 3.18
2855 5781 1.523758 CTACTGCACAGGGTTTCACC 58.476 55.000 2.21 0.00 37.60 4.02
2856 5782 0.840617 TACTGCACAGGGTTTCACCA 59.159 50.000 2.21 0.00 41.02 4.17
2857 5783 0.185901 ACTGCACAGGGTTTCACCAT 59.814 50.000 2.21 0.00 41.02 3.55
2858 5784 1.331214 CTGCACAGGGTTTCACCATT 58.669 50.000 0.00 0.00 41.02 3.16
2872 5839 2.133553 CACCATTGTTTTTCGCATGCA 58.866 42.857 19.57 1.73 0.00 3.96
2909 5877 1.457346 CATTGTGAAGGGAGTGGAGC 58.543 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.002250 CGGTCTTGGTCTCGTCGTTG 61.002 60.000 0.00 0.00 0.00 4.10
2 3 1.285023 CGGTCTTGGTCTCGTCGTT 59.715 57.895 0.00 0.00 0.00 3.85
6 7 0.243095 GTAAGCGGTCTTGGTCTCGT 59.757 55.000 0.00 0.00 33.85 4.18
7 8 0.797249 CGTAAGCGGTCTTGGTCTCG 60.797 60.000 0.00 0.00 33.85 4.04
8 9 3.031660 CGTAAGCGGTCTTGGTCTC 57.968 57.895 0.00 0.00 33.85 3.36
19 20 1.968050 AAGGTGGGGATCCGTAAGCG 61.968 60.000 5.45 0.00 35.24 4.68
20 21 0.255033 AAAGGTGGGGATCCGTAAGC 59.745 55.000 5.45 3.36 35.24 3.09
21 22 3.389983 TGATAAAGGTGGGGATCCGTAAG 59.610 47.826 5.45 0.00 35.24 2.34
22 23 3.386063 TGATAAAGGTGGGGATCCGTAA 58.614 45.455 5.45 0.00 35.24 3.18
23 24 3.049108 TGATAAAGGTGGGGATCCGTA 57.951 47.619 5.45 0.00 35.24 4.02
24 25 1.887797 TGATAAAGGTGGGGATCCGT 58.112 50.000 5.45 0.00 35.24 4.69
25 26 3.508845 ATTGATAAAGGTGGGGATCCG 57.491 47.619 5.45 0.00 35.24 4.18
26 27 5.584551 AGTATTGATAAAGGTGGGGATCC 57.415 43.478 1.92 1.92 0.00 3.36
27 28 6.601332 TGAAGTATTGATAAAGGTGGGGATC 58.399 40.000 0.00 0.00 0.00 3.36
28 29 6.590656 TGAAGTATTGATAAAGGTGGGGAT 57.409 37.500 0.00 0.00 0.00 3.85
29 30 6.389869 AGATGAAGTATTGATAAAGGTGGGGA 59.610 38.462 0.00 0.00 0.00 4.81
30 31 6.605119 AGATGAAGTATTGATAAAGGTGGGG 58.395 40.000 0.00 0.00 0.00 4.96
72 73 9.826574 AAACAAGCAAGAATATGATAATGCAAT 57.173 25.926 0.00 0.00 36.30 3.56
73 74 9.304731 GAAACAAGCAAGAATATGATAATGCAA 57.695 29.630 0.00 0.00 36.30 4.08
74 75 8.689061 AGAAACAAGCAAGAATATGATAATGCA 58.311 29.630 0.00 0.00 36.30 3.96
75 76 9.178427 GAGAAACAAGCAAGAATATGATAATGC 57.822 33.333 0.00 0.00 0.00 3.56
80 81 9.582431 CAATTGAGAAACAAGCAAGAATATGAT 57.418 29.630 0.00 0.00 42.02 2.45
81 82 8.795513 TCAATTGAGAAACAAGCAAGAATATGA 58.204 29.630 3.38 0.00 42.02 2.15
82 83 8.975410 TCAATTGAGAAACAAGCAAGAATATG 57.025 30.769 3.38 0.00 42.02 1.78
84 85 9.414295 CAATCAATTGAGAAACAAGCAAGAATA 57.586 29.630 14.54 0.00 42.02 1.75
85 86 7.095355 GCAATCAATTGAGAAACAAGCAAGAAT 60.095 33.333 14.54 0.00 42.02 2.40
86 87 6.201425 GCAATCAATTGAGAAACAAGCAAGAA 59.799 34.615 14.54 0.00 42.02 2.52
87 88 5.693104 GCAATCAATTGAGAAACAAGCAAGA 59.307 36.000 14.54 0.00 42.02 3.02
88 89 5.464057 TGCAATCAATTGAGAAACAAGCAAG 59.536 36.000 14.54 0.00 42.02 4.01
89 90 5.358090 TGCAATCAATTGAGAAACAAGCAA 58.642 33.333 14.54 0.00 42.02 3.91
90 91 4.946445 TGCAATCAATTGAGAAACAAGCA 58.054 34.783 14.54 11.89 42.02 3.91
91 92 4.387862 CCTGCAATCAATTGAGAAACAAGC 59.612 41.667 14.54 9.69 42.02 4.01
92 93 5.775686 TCCTGCAATCAATTGAGAAACAAG 58.224 37.500 14.54 6.50 42.02 3.16
93 94 5.787953 TCCTGCAATCAATTGAGAAACAA 57.212 34.783 14.54 0.00 40.14 2.83
94 95 5.787953 TTCCTGCAATCAATTGAGAAACA 57.212 34.783 14.54 8.39 40.14 2.83
95 96 7.699812 GTCTATTCCTGCAATCAATTGAGAAAC 59.300 37.037 14.54 4.17 40.14 2.78
96 97 7.148018 GGTCTATTCCTGCAATCAATTGAGAAA 60.148 37.037 14.54 0.00 40.14 2.52
97 98 6.319658 GGTCTATTCCTGCAATCAATTGAGAA 59.680 38.462 14.54 10.64 40.14 2.87
98 99 5.824624 GGTCTATTCCTGCAATCAATTGAGA 59.175 40.000 14.54 1.50 40.14 3.27
99 100 5.826737 AGGTCTATTCCTGCAATCAATTGAG 59.173 40.000 14.54 2.24 39.46 3.02
100 101 5.759059 AGGTCTATTCCTGCAATCAATTGA 58.241 37.500 11.26 11.26 39.46 2.57
101 102 5.009410 GGAGGTCTATTCCTGCAATCAATTG 59.991 44.000 0.00 0.00 43.82 2.32
102 103 5.136105 GGAGGTCTATTCCTGCAATCAATT 58.864 41.667 0.00 0.00 43.82 2.32
103 104 4.723309 GGAGGTCTATTCCTGCAATCAAT 58.277 43.478 0.00 0.00 43.82 2.57
104 105 4.156455 GGAGGTCTATTCCTGCAATCAA 57.844 45.455 0.00 0.00 43.82 2.57
105 106 3.845781 GGAGGTCTATTCCTGCAATCA 57.154 47.619 0.00 0.00 43.82 2.57
110 111 3.898123 TGACTATGGAGGTCTATTCCTGC 59.102 47.826 0.00 0.00 44.48 4.85
111 112 4.526262 CCTGACTATGGAGGTCTATTCCTG 59.474 50.000 0.00 0.00 38.02 3.86
112 113 4.171044 ACCTGACTATGGAGGTCTATTCCT 59.829 45.833 0.00 0.00 38.22 3.36
113 114 4.484912 ACCTGACTATGGAGGTCTATTCC 58.515 47.826 0.00 0.00 38.22 3.01
114 115 5.598830 TCAACCTGACTATGGAGGTCTATTC 59.401 44.000 0.00 0.00 42.03 1.75
115 116 5.529289 TCAACCTGACTATGGAGGTCTATT 58.471 41.667 0.00 0.00 42.03 1.73
116 117 5.144159 TCAACCTGACTATGGAGGTCTAT 57.856 43.478 0.00 0.00 42.03 1.98
117 118 4.603094 TCAACCTGACTATGGAGGTCTA 57.397 45.455 0.00 0.00 42.03 2.59
118 119 3.474798 TCAACCTGACTATGGAGGTCT 57.525 47.619 0.00 0.00 42.03 3.85
119 120 3.243569 CGATCAACCTGACTATGGAGGTC 60.244 52.174 0.00 0.00 42.03 3.85
120 121 2.695666 CGATCAACCTGACTATGGAGGT 59.304 50.000 0.00 0.00 44.94 3.85
121 122 2.695666 ACGATCAACCTGACTATGGAGG 59.304 50.000 0.00 0.00 35.26 4.30
122 123 3.711086 CACGATCAACCTGACTATGGAG 58.289 50.000 0.00 0.00 0.00 3.86
123 124 2.159099 GCACGATCAACCTGACTATGGA 60.159 50.000 0.00 0.00 0.00 3.41
124 125 2.159043 AGCACGATCAACCTGACTATGG 60.159 50.000 0.00 0.00 0.00 2.74
125 126 3.119291 GAGCACGATCAACCTGACTATG 58.881 50.000 0.00 0.00 0.00 2.23
126 127 2.101582 GGAGCACGATCAACCTGACTAT 59.898 50.000 0.00 0.00 0.00 2.12
127 128 1.476891 GGAGCACGATCAACCTGACTA 59.523 52.381 0.00 0.00 0.00 2.59
128 129 0.247736 GGAGCACGATCAACCTGACT 59.752 55.000 0.00 0.00 0.00 3.41
129 130 2.755929 GGAGCACGATCAACCTGAC 58.244 57.895 0.00 0.00 0.00 3.51
141 142 2.845752 TATTGACCACGCCGGAGCAC 62.846 60.000 5.05 0.00 39.83 4.40
142 143 2.173758 TTATTGACCACGCCGGAGCA 62.174 55.000 5.05 0.00 39.83 4.26
143 144 1.448893 TTATTGACCACGCCGGAGC 60.449 57.895 5.05 0.00 38.63 4.70
144 145 2.380081 GTTATTGACCACGCCGGAG 58.620 57.895 5.05 3.72 38.63 4.63
145 146 4.602159 GTTATTGACCACGCCGGA 57.398 55.556 5.05 0.00 38.63 5.14
154 155 5.153950 ACCAACTCTGAGAGGTTATTGAC 57.846 43.478 14.83 0.00 33.35 3.18
155 156 5.825593 AACCAACTCTGAGAGGTTATTGA 57.174 39.130 26.10 0.00 42.23 2.57
156 157 6.092807 GCTAAACCAACTCTGAGAGGTTATTG 59.907 42.308 26.90 21.64 43.17 1.90
157 158 6.174049 GCTAAACCAACTCTGAGAGGTTATT 58.826 40.000 26.90 19.37 43.17 1.40
158 159 5.624738 CGCTAAACCAACTCTGAGAGGTTAT 60.625 44.000 26.90 21.06 43.17 1.89
159 160 4.321750 CGCTAAACCAACTCTGAGAGGTTA 60.322 45.833 26.90 16.55 43.17 2.85
160 161 3.555168 CGCTAAACCAACTCTGAGAGGTT 60.555 47.826 23.63 23.63 45.73 3.50
161 162 2.028930 CGCTAAACCAACTCTGAGAGGT 60.029 50.000 14.83 15.13 33.35 3.85
162 163 2.231478 TCGCTAAACCAACTCTGAGAGG 59.769 50.000 14.83 14.49 33.35 3.69
163 164 3.577649 TCGCTAAACCAACTCTGAGAG 57.422 47.619 12.44 8.15 35.52 3.20
164 165 4.245660 CAATCGCTAAACCAACTCTGAGA 58.754 43.478 12.44 0.00 0.00 3.27
165 166 3.181516 GCAATCGCTAAACCAACTCTGAG 60.182 47.826 2.45 2.45 34.30 3.35
166 167 2.742053 GCAATCGCTAAACCAACTCTGA 59.258 45.455 0.00 0.00 34.30 3.27
167 168 3.122937 GCAATCGCTAAACCAACTCTG 57.877 47.619 0.00 0.00 34.30 3.35
185 186 1.375396 ACGACATTGCGCCTTAGCA 60.375 52.632 4.18 0.00 46.54 3.49
186 187 1.060937 CACGACATTGCGCCTTAGC 59.939 57.895 4.18 0.00 37.71 3.09
187 188 1.060937 GCACGACATTGCGCCTTAG 59.939 57.895 4.18 0.00 31.51 2.18
188 189 1.024046 ATGCACGACATTGCGCCTTA 61.024 50.000 4.18 0.00 46.20 2.69
189 190 1.024046 TATGCACGACATTGCGCCTT 61.024 50.000 4.18 0.00 46.20 4.35
190 191 0.815213 ATATGCACGACATTGCGCCT 60.815 50.000 4.18 0.00 46.20 5.52
191 192 0.029300 AATATGCACGACATTGCGCC 59.971 50.000 4.18 0.00 46.20 6.53
192 193 1.513994 CAAATATGCACGACATTGCGC 59.486 47.619 0.00 0.00 46.20 6.09
193 194 2.784505 ACAAATATGCACGACATTGCG 58.215 42.857 0.00 0.00 46.20 4.85
194 195 4.908736 ACTACAAATATGCACGACATTGC 58.091 39.130 0.00 0.00 43.31 3.56
195 196 5.190342 CGACTACAAATATGCACGACATTG 58.810 41.667 0.00 0.00 40.38 2.82
196 197 4.270084 CCGACTACAAATATGCACGACATT 59.730 41.667 0.00 0.00 40.38 2.71
197 198 3.802139 CCGACTACAAATATGCACGACAT 59.198 43.478 0.00 0.00 43.18 3.06
198 199 3.119424 TCCGACTACAAATATGCACGACA 60.119 43.478 0.00 0.00 0.00 4.35
199 200 3.441163 TCCGACTACAAATATGCACGAC 58.559 45.455 0.00 0.00 0.00 4.34
200 201 3.786516 TCCGACTACAAATATGCACGA 57.213 42.857 0.00 0.00 0.00 4.35
201 202 3.119628 CGATCCGACTACAAATATGCACG 59.880 47.826 0.00 0.00 0.00 5.34
202 203 4.049186 ACGATCCGACTACAAATATGCAC 58.951 43.478 0.00 0.00 0.00 4.57
203 204 4.316205 ACGATCCGACTACAAATATGCA 57.684 40.909 0.00 0.00 0.00 3.96
204 205 5.919141 ACTAACGATCCGACTACAAATATGC 59.081 40.000 0.00 0.00 0.00 3.14
205 206 6.916387 ACACTAACGATCCGACTACAAATATG 59.084 38.462 0.00 0.00 0.00 1.78
206 207 7.035840 ACACTAACGATCCGACTACAAATAT 57.964 36.000 0.00 0.00 0.00 1.28
207 208 6.441093 ACACTAACGATCCGACTACAAATA 57.559 37.500 0.00 0.00 0.00 1.40
208 209 5.320549 ACACTAACGATCCGACTACAAAT 57.679 39.130 0.00 0.00 0.00 2.32
209 210 4.669965 CGACACTAACGATCCGACTACAAA 60.670 45.833 0.00 0.00 0.00 2.83
210 211 3.181517 CGACACTAACGATCCGACTACAA 60.182 47.826 0.00 0.00 0.00 2.41
211 212 2.349580 CGACACTAACGATCCGACTACA 59.650 50.000 0.00 0.00 0.00 2.74
212 213 2.604914 TCGACACTAACGATCCGACTAC 59.395 50.000 0.00 0.00 34.85 2.73
213 214 2.862536 CTCGACACTAACGATCCGACTA 59.137 50.000 0.00 0.00 39.02 2.59
214 215 1.664659 CTCGACACTAACGATCCGACT 59.335 52.381 0.00 0.00 39.02 4.18
215 216 1.396301 ACTCGACACTAACGATCCGAC 59.604 52.381 0.00 0.00 39.02 4.79
216 217 1.662629 GACTCGACACTAACGATCCGA 59.337 52.381 0.00 0.00 39.02 4.55
217 218 1.267932 GGACTCGACACTAACGATCCG 60.268 57.143 0.00 0.00 39.02 4.18
218 219 1.741706 TGGACTCGACACTAACGATCC 59.258 52.381 0.00 0.00 39.02 3.36
219 220 2.477525 GGTGGACTCGACACTAACGATC 60.478 54.545 4.84 0.00 39.02 3.69
220 221 1.471684 GGTGGACTCGACACTAACGAT 59.528 52.381 4.84 0.00 39.02 3.73
221 222 0.877071 GGTGGACTCGACACTAACGA 59.123 55.000 4.84 0.00 38.83 3.85
222 223 0.453950 CGGTGGACTCGACACTAACG 60.454 60.000 4.84 0.00 38.83 3.18
223 224 0.877071 TCGGTGGACTCGACACTAAC 59.123 55.000 4.84 0.00 38.83 2.34
224 225 1.608055 TTCGGTGGACTCGACACTAA 58.392 50.000 4.84 0.00 38.83 2.24
225 226 1.741706 GATTCGGTGGACTCGACACTA 59.258 52.381 4.84 0.00 38.83 2.74
226 227 0.526662 GATTCGGTGGACTCGACACT 59.473 55.000 4.84 0.00 38.83 3.55
227 228 0.242825 TGATTCGGTGGACTCGACAC 59.757 55.000 0.00 0.00 36.30 3.67
228 229 0.963225 TTGATTCGGTGGACTCGACA 59.037 50.000 0.00 0.00 36.30 4.35
229 230 2.295253 ATTGATTCGGTGGACTCGAC 57.705 50.000 0.00 0.00 36.30 4.20
230 231 3.021695 ACTATTGATTCGGTGGACTCGA 58.978 45.455 0.00 0.00 34.62 4.04
231 232 3.438297 ACTATTGATTCGGTGGACTCG 57.562 47.619 0.00 0.00 0.00 4.18
232 233 6.513180 TGATAACTATTGATTCGGTGGACTC 58.487 40.000 0.00 0.00 0.00 3.36
233 234 6.479972 TGATAACTATTGATTCGGTGGACT 57.520 37.500 0.00 0.00 0.00 3.85
234 235 7.155328 AGATGATAACTATTGATTCGGTGGAC 58.845 38.462 0.00 0.00 0.00 4.02
235 236 7.015195 TGAGATGATAACTATTGATTCGGTGGA 59.985 37.037 0.00 0.00 0.00 4.02
236 237 7.154656 TGAGATGATAACTATTGATTCGGTGG 58.845 38.462 0.00 0.00 0.00 4.61
237 238 8.768957 ATGAGATGATAACTATTGATTCGGTG 57.231 34.615 0.00 0.00 0.00 4.94
238 239 7.757173 CGATGAGATGATAACTATTGATTCGGT 59.243 37.037 0.00 0.00 0.00 4.69
239 240 7.970614 TCGATGAGATGATAACTATTGATTCGG 59.029 37.037 0.00 0.00 0.00 4.30
240 241 8.902040 TCGATGAGATGATAACTATTGATTCG 57.098 34.615 0.00 0.00 0.00 3.34
263 264 4.515404 GGGTGTCCCGATCTTTCG 57.485 61.111 0.00 0.00 45.08 3.46
272 273 0.178970 TATAGAGGCGAGGGTGTCCC 60.179 60.000 0.00 0.00 45.90 4.46
273 274 1.700955 TTATAGAGGCGAGGGTGTCC 58.299 55.000 0.00 0.00 0.00 4.02
274 275 3.814005 TTTTATAGAGGCGAGGGTGTC 57.186 47.619 0.00 0.00 0.00 3.67
347 349 2.673368 CTGTTGAGGTATCGTTGCCTTC 59.327 50.000 4.51 0.00 38.19 3.46
376 378 0.251386 TTCCCTGAGCAGACTCTCGT 60.251 55.000 0.00 0.00 43.85 4.18
406 408 0.539438 TGTTCCTTGTGGATGTGGGC 60.539 55.000 0.00 0.00 42.81 5.36
430 432 2.497675 TGTCCATGCACTTCTAGTCCTC 59.502 50.000 0.00 0.00 0.00 3.71
448 450 8.083462 TCATGTTATTTGTTGTCTAGTGTGTC 57.917 34.615 0.00 0.00 0.00 3.67
495 497 1.606668 GTGCGGTCCTTGTCATTGAAA 59.393 47.619 0.00 0.00 0.00 2.69
499 501 0.036388 ATCGTGCGGTCCTTGTCATT 60.036 50.000 0.00 0.00 0.00 2.57
506 508 2.125512 GCTTCATCGTGCGGTCCT 60.126 61.111 0.00 0.00 0.00 3.85
518 520 0.527113 CATTGAATGCCACGGCTTCA 59.473 50.000 9.92 12.98 42.51 3.02
519 521 0.527565 ACATTGAATGCCACGGCTTC 59.472 50.000 9.92 10.70 42.51 3.86
526 528 4.201990 GCAAACCAAAAACATTGAATGCCA 60.202 37.500 4.84 0.00 0.00 4.92
542 544 0.320374 AGACCGAATCGAGCAAACCA 59.680 50.000 3.36 0.00 0.00 3.67
606 608 4.388773 CGAAGATCGAACAATGAAGAACCA 59.611 41.667 0.00 0.00 43.74 3.67
621 623 4.276183 TCATCCTCTAAAGACCGAAGATCG 59.724 45.833 0.00 0.00 40.07 3.69
623 625 7.841282 TTATCATCCTCTAAAGACCGAAGAT 57.159 36.000 0.00 0.00 0.00 2.40
628 630 8.839310 ATCAAATTATCATCCTCTAAAGACCG 57.161 34.615 0.00 0.00 0.00 4.79
652 657 2.702592 TCGGTTTATTTGGCGAGGAT 57.297 45.000 0.00 0.00 0.00 3.24
653 658 2.476126 TTCGGTTTATTTGGCGAGGA 57.524 45.000 0.00 0.00 0.00 3.71
654 659 3.775661 AATTCGGTTTATTTGGCGAGG 57.224 42.857 0.00 0.00 0.00 4.63
655 660 4.728534 TGAAATTCGGTTTATTTGGCGAG 58.271 39.130 0.00 0.00 0.00 5.03
656 661 4.768130 TGAAATTCGGTTTATTTGGCGA 57.232 36.364 0.00 0.00 0.00 5.54
657 662 7.513190 TTTATGAAATTCGGTTTATTTGGCG 57.487 32.000 0.00 0.00 0.00 5.69
658 663 8.172484 GGTTTTATGAAATTCGGTTTATTTGGC 58.828 33.333 0.00 0.00 0.00 4.52
686 691 7.500992 TGACTTGTAGAATGAGACTTCAAAGT 58.499 34.615 0.00 0.00 43.16 2.66
689 694 7.290110 TCTGACTTGTAGAATGAGACTTCAA 57.710 36.000 0.00 0.00 36.78 2.69
691 696 8.031864 TGAATCTGACTTGTAGAATGAGACTTC 58.968 37.037 0.00 0.00 0.00 3.01
764 769 4.777463 AGTAGTTGTGTAAAGTGCTGGTT 58.223 39.130 0.00 0.00 0.00 3.67
787 792 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
788 793 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
789 794 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
790 795 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
791 796 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
838 843 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
839 844 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
840 845 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
848 853 9.047947 ACTGAATTACTCCCTCTGTAAACTAAT 57.952 33.333 0.00 0.00 34.20 1.73
849 854 8.431910 ACTGAATTACTCCCTCTGTAAACTAA 57.568 34.615 0.00 0.00 34.20 2.24
850 855 8.431910 AACTGAATTACTCCCTCTGTAAACTA 57.568 34.615 0.00 0.00 34.20 2.24
851 856 6.936968 ACTGAATTACTCCCTCTGTAAACT 57.063 37.500 0.00 0.00 34.20 2.66
852 857 7.332182 CAGAACTGAATTACTCCCTCTGTAAAC 59.668 40.741 0.00 0.00 34.20 2.01
853 858 7.016268 ACAGAACTGAATTACTCCCTCTGTAAA 59.984 37.037 8.87 0.00 34.20 2.01
854 859 6.497259 ACAGAACTGAATTACTCCCTCTGTAA 59.503 38.462 8.87 0.00 33.65 2.41
855 860 6.017192 ACAGAACTGAATTACTCCCTCTGTA 58.983 40.000 8.87 0.00 33.65 2.74
856 861 4.841246 ACAGAACTGAATTACTCCCTCTGT 59.159 41.667 8.87 0.00 0.00 3.41
857 862 5.413309 ACAGAACTGAATTACTCCCTCTG 57.587 43.478 8.87 0.00 0.00 3.35
858 863 7.741554 AATACAGAACTGAATTACTCCCTCT 57.258 36.000 8.87 0.00 0.00 3.69
859 864 8.794335 AAAATACAGAACTGAATTACTCCCTC 57.206 34.615 8.87 0.00 0.00 4.30
860 865 9.668497 GTAAAATACAGAACTGAATTACTCCCT 57.332 33.333 8.87 0.00 0.00 4.20
861 866 9.444600 TGTAAAATACAGAACTGAATTACTCCC 57.555 33.333 8.87 0.00 34.06 4.30
877 882 3.566322 ACAAAGCGCCAGTGTAAAATACA 59.434 39.130 2.29 0.00 36.08 2.29
951 1245 2.534452 CGTGAACGTTGGGTATGCA 58.466 52.632 5.00 0.00 34.11 3.96
1134 1441 2.703007 TGGGAAATTTCTTGGTTGTGGG 59.297 45.455 17.42 0.00 0.00 4.61
1244 1551 3.003173 CCCCGAGCCAGAGTTCCA 61.003 66.667 0.00 0.00 0.00 3.53
1572 1912 1.078143 CTTCCTGGCCCTCCTTTCG 60.078 63.158 0.00 0.00 0.00 3.46
1736 2088 0.179234 GCCCCTTCTCAACTCCTAGC 59.821 60.000 0.00 0.00 0.00 3.42
1984 4815 7.148918 GGAAACATTTCACATTCAAATCACGAG 60.149 37.037 6.68 0.00 38.92 4.18
1998 4829 5.289595 GGAAAAGGACTGGAAACATTTCAC 58.710 41.667 6.68 0.00 41.51 3.18
2009 4842 2.403252 ACATAGCGGAAAAGGACTGG 57.597 50.000 0.00 0.00 0.00 4.00
2040 4873 3.053768 TCAATATGCCCTCCACACAATCA 60.054 43.478 0.00 0.00 0.00 2.57
2082 4915 7.446931 TGTGGATGCACTAAGACAAGAATTTTA 59.553 33.333 18.75 0.00 0.00 1.52
2144 4977 2.524394 ATAGTGATCGGGCGGCCT 60.524 61.111 27.04 8.20 0.00 5.19
2185 5018 3.431725 CCCGTTTGAGAAGGCCGC 61.432 66.667 0.00 0.00 0.00 6.53
2189 5022 1.533625 TTGATGCCCGTTTGAGAAGG 58.466 50.000 0.00 0.00 0.00 3.46
2228 5065 5.795343 TCATATTTGGGCTGGATATAAGGGA 59.205 40.000 0.00 0.00 0.00 4.20
2262 5101 2.920912 ACACGTCCGGACACCCAT 60.921 61.111 32.80 11.38 0.00 4.00
2317 5177 1.519751 TTGGTGCAATGTACGGTGGC 61.520 55.000 0.00 0.00 0.00 5.01
2326 5186 0.249955 GGGGTGGATTTGGTGCAATG 59.750 55.000 0.00 0.00 0.00 2.82
2352 5216 2.363306 ATAGCAAATGGATCCGGCAA 57.637 45.000 16.60 0.00 0.00 4.52
2427 5298 3.741830 GAGGCTAGGAACCGCTGCC 62.742 68.421 13.50 13.50 43.52 4.85
2433 5304 2.202946 GCGCAGAGGCTAGGAACC 60.203 66.667 0.30 0.00 38.10 3.62
2580 5483 1.138247 GCAGCAAAATCGGCCAGAG 59.862 57.895 2.24 0.00 0.00 3.35
2594 5507 3.569250 TTTCCCTAACAAAATCGCAGC 57.431 42.857 0.00 0.00 0.00 5.25
2595 5508 4.865776 TGTTTTCCCTAACAAAATCGCAG 58.134 39.130 0.00 0.00 35.22 5.18
2635 5549 4.098044 GTCGGTCCATACTTCTCATCAGAA 59.902 45.833 0.00 0.00 37.11 3.02
2681 5597 3.119291 CCGAGGAATCGAAGAACTCATG 58.881 50.000 0.00 0.00 43.58 3.07
2777 5696 4.038271 TGATTGAGCCCTTGAAGTTGAT 57.962 40.909 0.00 0.00 0.00 2.57
2849 5775 3.247173 GCATGCGAAAAACAATGGTGAAA 59.753 39.130 0.00 0.00 0.00 2.69
2850 5776 2.799412 GCATGCGAAAAACAATGGTGAA 59.201 40.909 0.00 0.00 0.00 3.18
2852 5778 2.133553 TGCATGCGAAAAACAATGGTG 58.866 42.857 14.09 0.00 0.00 4.17
2853 5779 2.035704 TCTGCATGCGAAAAACAATGGT 59.964 40.909 14.09 0.00 0.00 3.55
2854 5780 2.674954 TCTGCATGCGAAAAACAATGG 58.325 42.857 14.09 0.00 0.00 3.16
2855 5781 4.448005 GTTTCTGCATGCGAAAAACAATG 58.552 39.130 27.26 5.81 32.71 2.82
2856 5782 3.494251 GGTTTCTGCATGCGAAAAACAAT 59.506 39.130 28.38 0.00 32.71 2.71
2857 5783 2.863137 GGTTTCTGCATGCGAAAAACAA 59.137 40.909 28.38 13.43 32.71 2.83
2858 5784 2.159184 TGGTTTCTGCATGCGAAAAACA 60.159 40.909 28.38 26.26 32.71 2.83
2897 5865 2.883828 CGTGTGGCTCCACTCCCTT 61.884 63.158 18.72 0.00 46.30 3.95
2909 5877 2.221055 GCTTGAAGTAGTTGTCGTGTGG 59.779 50.000 0.00 0.00 0.00 4.17
2918 5886 3.391296 TCCCTTGTGAGCTTGAAGTAGTT 59.609 43.478 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.