Multiple sequence alignment - TraesCS5B01G331700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G331700 chr5B 100.000 4543 0 0 1 4543 516034468 516029926 0.000000e+00 8390.0
1 TraesCS5B01G331700 chr5B 93.458 214 8 5 1799 2008 685681004 685681215 3.410000e-81 313.0
2 TraesCS5B01G331700 chr5D 90.058 1036 75 14 1734 2754 426164358 426163336 0.000000e+00 1317.0
3 TraesCS5B01G331700 chr5D 90.952 840 47 13 3253 4076 426162668 426161842 0.000000e+00 1103.0
4 TraesCS5B01G331700 chr5D 90.000 870 38 13 890 1741 426165257 426164419 0.000000e+00 1079.0
5 TraesCS5B01G331700 chr5D 91.816 391 21 8 501 891 426165805 426165426 6.690000e-148 534.0
6 TraesCS5B01G331700 chr5D 84.830 323 38 8 159 473 478686889 478686570 9.490000e-82 315.0
7 TraesCS5B01G331700 chr5D 90.728 151 10 3 3026 3174 426162963 426162815 9.970000e-47 198.0
8 TraesCS5B01G331700 chr5D 91.837 147 3 2 4254 4400 426161301 426161164 3.590000e-46 196.0
9 TraesCS5B01G331700 chr5D 91.339 127 8 1 2903 3026 426163120 426162994 2.170000e-38 171.0
10 TraesCS5B01G331700 chr5D 86.957 161 6 2 4064 4224 426161447 426161302 2.810000e-37 167.0
11 TraesCS5B01G331700 chr5D 96.939 98 3 0 4407 4504 426161122 426161025 1.010000e-36 165.0
12 TraesCS5B01G331700 chr5D 95.556 45 1 1 2875 2919 426163180 426163137 2.270000e-08 71.3
13 TraesCS5B01G331700 chr5A 88.083 1158 63 22 584 1716 540367303 540366196 0.000000e+00 1304.0
14 TraesCS5B01G331700 chr5A 84.906 1060 77 25 1745 2754 540366132 540365106 0.000000e+00 994.0
15 TraesCS5B01G331700 chr5A 89.861 789 40 22 3237 4020 540364573 540363820 0.000000e+00 977.0
16 TraesCS5B01G331700 chr5A 93.333 210 10 2 2821 3026 540365099 540364890 1.590000e-79 307.0
17 TraesCS5B01G331700 chr5A 93.377 151 7 3 3026 3174 540364860 540364711 2.130000e-53 220.0
18 TraesCS5B01G331700 chr5A 95.122 41 1 1 4079 4119 540363787 540363748 3.790000e-06 63.9
19 TraesCS5B01G331700 chr1A 97.257 474 12 1 1 473 38635568 38635095 0.000000e+00 802.0
20 TraesCS5B01G331700 chr1A 96.277 376 11 3 1 375 38582502 38582129 8.350000e-172 614.0
21 TraesCS5B01G331700 chr1A 97.241 290 8 0 184 473 38581846 38581557 4.080000e-135 492.0
22 TraesCS5B01G331700 chr1A 97.112 277 8 0 197 473 38582136 38581860 6.880000e-128 468.0
23 TraesCS5B01G331700 chr1A 93.458 214 8 4 1799 2008 575302235 575302446 3.410000e-81 313.0
24 TraesCS5B01G331700 chr1A 93.396 212 11 1 2818 3026 25225578 25225367 1.230000e-80 311.0
25 TraesCS5B01G331700 chr1A 93.396 212 10 2 2818 3026 377328180 377328390 1.230000e-80 311.0
26 TraesCS5B01G331700 chr1A 83.489 321 25 4 2458 2754 377327865 377328181 1.610000e-69 274.0
27 TraesCS5B01G331700 chr1A 82.243 321 29 4 2458 2754 25225893 25225577 7.540000e-63 252.0
28 TraesCS5B01G331700 chr1A 92.857 98 5 1 3026 3121 25225336 25225239 1.700000e-29 141.0
29 TraesCS5B01G331700 chr1A 90.816 98 7 1 3026 3121 377328421 377328518 3.690000e-26 130.0
30 TraesCS5B01G331700 chr7D 91.321 530 33 9 1799 2319 518416411 518415886 0.000000e+00 712.0
31 TraesCS5B01G331700 chr7D 82.059 340 50 9 1006 1338 7453883 7454218 3.460000e-71 279.0
32 TraesCS5B01G331700 chr7D 94.410 161 8 1 2159 2319 633763750 633763591 3.510000e-61 246.0
33 TraesCS5B01G331700 chr7D 89.143 175 19 0 3367 3541 7455503 7455677 7.650000e-53 219.0
34 TraesCS5B01G331700 chr7D 87.200 125 14 2 2629 2752 13688672 13688549 1.700000e-29 141.0
35 TraesCS5B01G331700 chr6D 91.082 527 34 10 1799 2316 240369123 240369645 0.000000e+00 701.0
36 TraesCS5B01G331700 chr6D 89.714 175 18 0 3367 3541 804683 804857 1.640000e-54 224.0
37 TraesCS5B01G331700 chr6D 78.992 357 48 14 1006 1338 803605 803958 7.650000e-53 219.0
38 TraesCS5B01G331700 chr3B 90.114 526 33 14 1799 2315 15921958 15922473 0.000000e+00 665.0
39 TraesCS5B01G331700 chr3B 83.027 489 66 11 1 473 432690913 432690426 1.170000e-115 427.0
40 TraesCS5B01G331700 chr3B 93.897 213 8 3 1800 2008 7910668 7910457 2.640000e-82 316.0
41 TraesCS5B01G331700 chr3B 88.889 126 13 1 2629 2754 245514455 245514331 2.190000e-33 154.0
42 TraesCS5B01G331700 chr3B 80.952 168 31 1 307 473 582028030 582027863 1.030000e-26 132.0
43 TraesCS5B01G331700 chr3B 79.885 174 28 6 304 473 582034746 582034916 2.220000e-23 121.0
44 TraesCS5B01G331700 chr1B 87.755 490 43 6 1 474 435125949 435126437 1.430000e-154 556.0
45 TraesCS5B01G331700 chr1B 93.427 213 10 4 1799 2008 576440449 576440238 3.410000e-81 313.0
46 TraesCS5B01G331700 chr2B 82.093 497 64 16 1 473 390917241 390916746 7.080000e-108 401.0
47 TraesCS5B01G331700 chr6A 90.909 297 22 5 2023 2316 45631859 45632153 1.180000e-105 394.0
48 TraesCS5B01G331700 chr6A 94.340 212 9 1 2818 3026 477729416 477729627 5.670000e-84 322.0
49 TraesCS5B01G331700 chr6A 80.627 351 50 13 1006 1338 286336 286686 5.830000e-64 255.0
50 TraesCS5B01G331700 chr6A 81.562 320 32 14 2458 2754 477729102 477729417 5.870000e-59 239.0
51 TraesCS5B01G331700 chr6A 89.143 175 19 0 3367 3541 287429 287603 7.650000e-53 219.0
52 TraesCS5B01G331700 chr6A 88.776 98 9 1 3026 3121 477729658 477729755 7.980000e-23 119.0
53 TraesCS5B01G331700 chr4A 91.071 280 14 8 1799 2070 655272975 655272699 7.180000e-98 368.0
54 TraesCS5B01G331700 chr4A 81.503 346 50 10 1006 1338 732778946 732779290 5.790000e-69 272.0
55 TraesCS5B01G331700 chr4A 89.143 175 19 0 3367 3541 732780524 732780698 7.650000e-53 219.0
56 TraesCS5B01G331700 chr4A 85.465 172 25 0 3370 3541 639977876 639978047 3.610000e-41 180.0
57 TraesCS5B01G331700 chr4A 87.500 128 15 1 2627 2754 586089496 586089370 3.660000e-31 147.0
58 TraesCS5B01G331700 chr4A 100.000 28 0 0 2402 2429 634544118 634544091 8.000000e-03 52.8
59 TraesCS5B01G331700 chr3A 93.868 212 10 1 2818 3026 638322856 638322645 2.640000e-82 316.0
60 TraesCS5B01G331700 chr3A 91.556 225 13 3 2802 3023 229770008 229770229 5.710000e-79 305.0
61 TraesCS5B01G331700 chr3A 83.125 320 27 3 2458 2754 638323170 638322855 2.690000e-67 267.0
62 TraesCS5B01G331700 chr3A 82.692 312 25 5 2458 2745 229769718 229770024 2.710000e-62 250.0
63 TraesCS5B01G331700 chr3A 92.857 98 5 1 3026 3121 638322614 638322517 1.700000e-29 141.0
64 TraesCS5B01G331700 chr3A 88.776 98 9 1 3026 3121 229770263 229770360 7.980000e-23 119.0
65 TraesCS5B01G331700 chr7A 89.474 228 14 4 2802 3026 82647716 82647496 3.460000e-71 279.0
66 TraesCS5B01G331700 chr7A 80.870 345 54 10 1006 1338 8381258 8381602 1.250000e-65 261.0
67 TraesCS5B01G331700 chr7A 83.333 312 23 5 2458 2745 82648006 82647700 1.250000e-65 261.0
68 TraesCS5B01G331700 chr7A 89.143 175 19 0 3367 3541 8382872 8383046 7.650000e-53 219.0
69 TraesCS5B01G331700 chr7A 91.837 98 6 2 3026 3121 82647465 82647368 7.930000e-28 135.0
70 TraesCS5B01G331700 chr7A 92.683 41 1 1 2398 2438 123273344 123273306 1.770000e-04 58.4
71 TraesCS5B01G331700 chr3D 81.389 360 51 7 4 349 67031091 67030734 3.460000e-71 279.0
72 TraesCS5B01G331700 chr3D 89.683 126 12 1 2629 2754 170240486 170240362 4.700000e-35 159.0
73 TraesCS5B01G331700 chr6B 80.966 352 47 14 1006 1338 3382979 3383329 1.250000e-65 261.0
74 TraesCS5B01G331700 chr6B 89.714 175 18 0 3367 3541 3384038 3384212 1.640000e-54 224.0
75 TraesCS5B01G331700 chr2D 80.719 306 50 4 1030 1335 633297825 633298121 3.540000e-56 230.0
76 TraesCS5B01G331700 chr2D 95.035 141 6 1 2159 2299 309415030 309414891 2.130000e-53 220.0
77 TraesCS5B01G331700 chr4D 89.062 128 13 1 2627 2754 15151075 15151201 1.690000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G331700 chr5B 516029926 516034468 4542 True 8390.000000 8390 100.000000 1 4543 1 chr5B.!!$R1 4542
1 TraesCS5B01G331700 chr5D 426161025 426165805 4780 True 500.130000 1317 91.618200 501 4504 10 chr5D.!!$R2 4003
2 TraesCS5B01G331700 chr5A 540363748 540367303 3555 True 644.316667 1304 90.780333 584 4119 6 chr5A.!!$R1 3535
3 TraesCS5B01G331700 chr1A 38581557 38582502 945 True 524.666667 614 96.876667 1 473 3 chr1A.!!$R3 472
4 TraesCS5B01G331700 chr1A 377327865 377328518 653 False 238.333333 311 89.233667 2458 3121 3 chr1A.!!$F2 663
5 TraesCS5B01G331700 chr1A 25225239 25225893 654 True 234.666667 311 89.498667 2458 3121 3 chr1A.!!$R2 663
6 TraesCS5B01G331700 chr7D 518415886 518416411 525 True 712.000000 712 91.321000 1799 2319 1 chr7D.!!$R2 520
7 TraesCS5B01G331700 chr7D 7453883 7455677 1794 False 249.000000 279 85.601000 1006 3541 2 chr7D.!!$F1 2535
8 TraesCS5B01G331700 chr6D 240369123 240369645 522 False 701.000000 701 91.082000 1799 2316 1 chr6D.!!$F1 517
9 TraesCS5B01G331700 chr6D 803605 804857 1252 False 221.500000 224 84.353000 1006 3541 2 chr6D.!!$F2 2535
10 TraesCS5B01G331700 chr3B 15921958 15922473 515 False 665.000000 665 90.114000 1799 2315 1 chr3B.!!$F1 516
11 TraesCS5B01G331700 chr6A 286336 287603 1267 False 237.000000 255 84.885000 1006 3541 2 chr6A.!!$F2 2535
12 TraesCS5B01G331700 chr6A 477729102 477729755 653 False 226.666667 322 88.226000 2458 3121 3 chr6A.!!$F3 663
13 TraesCS5B01G331700 chr4A 732778946 732780698 1752 False 245.500000 272 85.323000 1006 3541 2 chr4A.!!$F2 2535
14 TraesCS5B01G331700 chr3A 638322517 638323170 653 True 241.333333 316 89.950000 2458 3121 3 chr3A.!!$R1 663
15 TraesCS5B01G331700 chr3A 229769718 229770360 642 False 224.666667 305 87.674667 2458 3121 3 chr3A.!!$F1 663
16 TraesCS5B01G331700 chr7A 8381258 8383046 1788 False 240.000000 261 85.006500 1006 3541 2 chr7A.!!$F1 2535
17 TraesCS5B01G331700 chr7A 82647368 82648006 638 True 225.000000 279 88.214667 2458 3121 3 chr7A.!!$R2 663
18 TraesCS5B01G331700 chr6B 3382979 3384212 1233 False 242.500000 261 85.340000 1006 3541 2 chr6B.!!$F1 2535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
333 504 0.179062 GGCCCAGCAGTCAGATACAG 60.179 60.000 0.00 0.00 0.00 2.74 F
817 990 1.415659 CTACATCTCCAAGGCCCAGAG 59.584 57.143 0.00 3.11 0.00 3.35 F
1549 2012 0.828022 AATGGGATGCATTGCAGGTG 59.172 50.000 17.52 0.00 43.65 4.00 F
2145 2818 0.818445 TTTTCGGGCGTTAGTGGCAA 60.818 50.000 0.00 0.00 35.84 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1289 1664 0.516001 CTCGACCTTGACGAACTCGA 59.484 55.0 6.05 0.0 43.02 4.04 R
2123 2795 0.604511 CCACTAACGCCCGAAAAGGT 60.605 55.0 0.00 0.0 38.74 3.50 R
3226 5111 0.029300 GAGCAAAGCAAGCGTTCACA 59.971 50.0 0.00 0.0 37.01 3.58 R
3936 5882 0.325390 ACCCCGAAAAACCCACCAAA 60.325 50.0 0.00 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.853319 GCAGATCGATTTACGGCGG 59.147 57.895 13.24 0.00 42.82 6.13
56 57 2.875711 GGCGCGCGTTACTTCGTA 60.876 61.111 32.35 0.00 0.00 3.43
96 97 7.415229 CAAGGTATAAAAGAATTTAGGCGTCC 58.585 38.462 0.00 0.00 37.28 4.79
97 98 6.060136 AGGTATAAAAGAATTTAGGCGTCCC 58.940 40.000 0.00 0.00 37.28 4.46
100 101 1.751437 AAGAATTTAGGCGTCCCTGC 58.249 50.000 0.00 0.00 42.90 4.85
166 167 3.361158 CGGCACATTGCGGGTTCA 61.361 61.111 0.00 0.00 46.21 3.18
167 168 2.568090 GGCACATTGCGGGTTCAG 59.432 61.111 0.00 0.00 46.21 3.02
168 169 1.971167 GGCACATTGCGGGTTCAGA 60.971 57.895 0.00 0.00 46.21 3.27
203 204 3.427193 GCGCGTGTGGTTAATTTTTGAAT 59.573 39.130 8.43 0.00 0.00 2.57
333 504 0.179062 GGCCCAGCAGTCAGATACAG 60.179 60.000 0.00 0.00 0.00 2.74
406 577 2.299013 TGAGTTGGTACTGAACTGCGAT 59.701 45.455 13.45 0.00 33.71 4.58
410 581 2.821546 TGGTACTGAACTGCGATATGC 58.178 47.619 0.00 0.00 46.70 3.14
431 602 2.096980 CACGAGTAGCGGTACTGATTCA 59.903 50.000 30.44 0.00 46.49 2.57
473 644 5.048364 GTGGTACCAACATGCAATTAACTCA 60.048 40.000 18.31 0.00 0.00 3.41
474 645 5.536538 TGGTACCAACATGCAATTAACTCAA 59.463 36.000 13.60 0.00 0.00 3.02
475 646 6.040955 TGGTACCAACATGCAATTAACTCAAA 59.959 34.615 13.60 0.00 0.00 2.69
476 647 6.926272 GGTACCAACATGCAATTAACTCAAAA 59.074 34.615 7.15 0.00 0.00 2.44
498 669 7.692460 AAAAATACACATGAGAATCTGCAGA 57.308 32.000 20.79 20.79 34.92 4.26
499 670 6.674694 AAATACACATGAGAATCTGCAGAC 57.325 37.500 20.97 7.48 34.92 3.51
503 674 4.708909 ACACATGAGAATCTGCAGACTCTA 59.291 41.667 26.47 15.32 29.91 2.43
510 681 6.264292 TGAGAATCTGCAGACTCTAGGATAAC 59.736 42.308 26.47 13.25 29.91 1.89
516 687 4.575236 TGCAGACTCTAGGATAACAGTACG 59.425 45.833 0.00 0.00 0.00 3.67
517 688 4.815308 GCAGACTCTAGGATAACAGTACGA 59.185 45.833 0.00 0.00 0.00 3.43
518 689 5.049954 GCAGACTCTAGGATAACAGTACGAG 60.050 48.000 0.00 0.00 0.00 4.18
519 690 6.050432 CAGACTCTAGGATAACAGTACGAGT 58.950 44.000 0.00 0.00 33.60 4.18
522 693 6.593807 ACTCTAGGATAACAGTACGAGTCAT 58.406 40.000 0.00 0.00 0.00 3.06
523 694 6.483974 ACTCTAGGATAACAGTACGAGTCATG 59.516 42.308 0.00 0.00 0.00 3.07
550 721 1.806542 GACATGGCACGACAAGAATGT 59.193 47.619 0.00 0.00 44.25 2.71
572 743 6.155691 GTGTGTGCACATTCCAATAAAATG 57.844 37.500 24.69 0.00 43.97 2.32
575 746 6.098679 GTGTGCACATTCCAATAAAATGCTA 58.901 36.000 24.69 0.00 37.58 3.49
596 767 5.295292 GCTACTCATGTGCACTGAAACATAT 59.705 40.000 19.41 0.00 35.28 1.78
597 768 6.479990 GCTACTCATGTGCACTGAAACATATA 59.520 38.462 19.41 0.00 35.28 0.86
615 786 6.634805 ACATATATTCTTGGAGGCATCGTAG 58.365 40.000 0.00 0.00 0.00 3.51
638 809 9.076596 GTAGCAGTATTTGAAATCCATTTGAAC 57.923 33.333 0.00 0.00 0.00 3.18
639 810 7.669427 AGCAGTATTTGAAATCCATTTGAACA 58.331 30.769 0.00 0.00 0.00 3.18
640 811 7.599998 AGCAGTATTTGAAATCCATTTGAACAC 59.400 33.333 0.00 0.00 0.00 3.32
798 971 4.729918 CAGCCCAGAAAGCCCGCT 62.730 66.667 0.00 0.00 0.00 5.52
817 990 1.415659 CTACATCTCCAAGGCCCAGAG 59.584 57.143 0.00 3.11 0.00 3.35
891 1064 1.663379 GCCGGAAATAAAAGGCGCCT 61.663 55.000 27.08 27.08 40.17 5.52
900 1243 2.155197 AAAAGGCGCCTCCCTTCCAT 62.155 55.000 32.93 8.64 44.28 3.41
1003 1351 2.967076 CGGCGATCGGACCAATGG 60.967 66.667 18.30 0.00 34.75 3.16
1004 1352 3.279875 GGCGATCGGACCAATGGC 61.280 66.667 18.30 0.00 0.00 4.40
1283 1658 1.490574 GAGGAGAAGCTCAAGGCCTA 58.509 55.000 5.16 0.00 43.05 3.93
1289 1664 1.533469 AAGCTCAAGGCCTACGACGT 61.533 55.000 5.16 5.52 43.05 4.34
1344 1719 1.326213 ACCTCATCCTGGTGAGCGAG 61.326 60.000 16.20 8.89 43.36 5.03
1463 1926 3.810896 GTTGGTGCCCGGATTCGC 61.811 66.667 0.73 0.00 34.56 4.70
1484 1947 1.535462 GGTTCGATTGTGGACACCAAG 59.465 52.381 0.00 0.00 34.18 3.61
1487 1950 1.691976 TCGATTGTGGACACCAAGTCT 59.308 47.619 0.00 0.00 46.72 3.24
1515 1978 3.965470 AGGGTTTAGGGTTTTGTGTCT 57.035 42.857 0.00 0.00 0.00 3.41
1537 2000 3.443145 TGTTGGGTTACGAAATGGGAT 57.557 42.857 0.00 0.00 0.00 3.85
1545 2008 1.184431 ACGAAATGGGATGCATTGCA 58.816 45.000 14.72 14.72 44.86 4.08
1549 2012 0.828022 AATGGGATGCATTGCAGGTG 59.172 50.000 17.52 0.00 43.65 4.00
1584 2047 7.279981 CCGTTATGATTGGAGATTTGAAGTGTA 59.720 37.037 0.00 0.00 0.00 2.90
1643 2106 8.330302 CCGTACTGTATATTTTTAGGTTTTCCG 58.670 37.037 0.00 0.00 46.35 4.30
1659 2123 5.384787 GTTTTCCGTTAAGGGTATTTGTCG 58.615 41.667 13.68 0.00 41.52 4.35
1663 2127 5.350633 TCCGTTAAGGGTATTTGTCGTATG 58.649 41.667 13.68 0.00 41.52 2.39
1741 2275 8.764524 AGTGTCTGATGTTTGTAGATTTAGTC 57.235 34.615 0.00 0.00 0.00 2.59
1742 2276 7.819900 AGTGTCTGATGTTTGTAGATTTAGTCC 59.180 37.037 0.00 0.00 0.00 3.85
1743 2277 7.064728 GTGTCTGATGTTTGTAGATTTAGTCCC 59.935 40.741 0.00 0.00 0.00 4.46
1748 2333 7.942341 TGATGTTTGTAGATTTAGTCCCTGTTT 59.058 33.333 0.00 0.00 0.00 2.83
1764 2363 8.211629 AGTCCCTGTTTAATACTAGCATTTAGG 58.788 37.037 0.00 0.00 0.00 2.69
1767 2366 7.773690 CCCTGTTTAATACTAGCATTTAGGTGT 59.226 37.037 0.00 0.00 0.00 4.16
1771 2370 9.595823 GTTTAATACTAGCATTTAGGTGTCTGA 57.404 33.333 0.00 0.00 0.00 3.27
1781 2380 7.831193 AGCATTTAGGTGTCTGATGTTTAGATT 59.169 33.333 0.00 0.00 0.00 2.40
2120 2792 3.211045 GGTCCTAGTTGTTGCTTTGTGA 58.789 45.455 0.00 0.00 0.00 3.58
2123 2795 4.515191 GTCCTAGTTGTTGCTTTGTGATGA 59.485 41.667 0.00 0.00 0.00 2.92
2128 2800 4.160252 AGTTGTTGCTTTGTGATGACCTTT 59.840 37.500 0.00 0.00 0.00 3.11
2145 2818 0.818445 TTTTCGGGCGTTAGTGGCAA 60.818 50.000 0.00 0.00 35.84 4.52
2146 2819 1.508808 TTTCGGGCGTTAGTGGCAAC 61.509 55.000 0.00 0.00 35.84 4.17
2161 2834 4.439305 TGGCAACACTATTCAATGCTTC 57.561 40.909 0.00 0.00 46.17 3.86
2180 2853 4.201832 GCTTCTTGCATGATCTGACAAGAG 60.202 45.833 17.98 14.70 42.96 2.85
2295 2978 5.853572 TTCTTGGGGATTAGTACCTTTGT 57.146 39.130 0.00 0.00 0.00 2.83
2299 2982 5.106876 TGGGGATTAGTACCTTTGTAAGC 57.893 43.478 0.00 0.00 0.00 3.09
2331 3015 5.804639 TGGACACATTAGAATGCTACTGTT 58.195 37.500 0.92 0.00 38.12 3.16
2333 3017 5.447818 GGACACATTAGAATGCTACTGTTGC 60.448 44.000 7.29 7.29 38.12 4.17
2342 3026 6.351711 AGAATGCTACTGTTGCTGATTCATA 58.648 36.000 20.48 1.25 30.26 2.15
2343 3027 5.998454 ATGCTACTGTTGCTGATTCATAC 57.002 39.130 14.81 0.00 0.00 2.39
2375 3059 6.291377 AGCTTTGTAGTATGTGTATCCCATG 58.709 40.000 0.00 0.00 0.00 3.66
2380 3064 6.588204 TGTAGTATGTGTATCCCATGGTTTC 58.412 40.000 11.73 0.00 0.00 2.78
2385 3069 7.884877 AGTATGTGTATCCCATGGTTTCATATG 59.115 37.037 11.73 0.00 31.33 1.78
2477 3161 7.617041 AATATGTCTTCCTTTACTGCTCAAC 57.383 36.000 0.00 0.00 0.00 3.18
2543 3274 4.153958 TGCTGAATTTTAATTCGTGCGT 57.846 36.364 18.76 0.00 46.01 5.24
2544 3275 3.911365 TGCTGAATTTTAATTCGTGCGTG 59.089 39.130 18.76 6.33 46.01 5.34
2623 3608 4.785511 TGTCTCTAGTAGCACAACCTTC 57.214 45.455 0.00 0.00 0.00 3.46
2761 3901 8.934023 TCTAATGGTTGATATATTTTGGGGAC 57.066 34.615 0.00 0.00 0.00 4.46
2762 3902 8.506921 TCTAATGGTTGATATATTTTGGGGACA 58.493 33.333 0.00 0.00 39.83 4.02
2763 3903 7.601705 AATGGTTGATATATTTTGGGGACAG 57.398 36.000 0.00 0.00 44.54 3.51
2764 3904 6.334378 TGGTTGATATATTTTGGGGACAGA 57.666 37.500 0.00 0.00 44.54 3.41
2765 3905 6.364701 TGGTTGATATATTTTGGGGACAGAG 58.635 40.000 0.00 0.00 44.54 3.35
2766 3906 6.069088 TGGTTGATATATTTTGGGGACAGAGT 60.069 38.462 0.00 0.00 44.54 3.24
2767 3907 7.128109 TGGTTGATATATTTTGGGGACAGAGTA 59.872 37.037 0.00 0.00 44.54 2.59
2768 3908 8.164070 GGTTGATATATTTTGGGGACAGAGTAT 58.836 37.037 0.00 0.00 44.54 2.12
2769 3909 9.220767 GTTGATATATTTTGGGGACAGAGTATC 57.779 37.037 0.00 0.00 44.54 2.24
2793 3933 9.950496 ATCTAATGGTGGATATATCAACAACTC 57.050 33.333 19.75 5.21 35.30 3.01
2794 3934 9.159254 TCTAATGGTGGATATATCAACAACTCT 57.841 33.333 19.75 2.66 35.30 3.24
2795 3935 9.212641 CTAATGGTGGATATATCAACAACTCTG 57.787 37.037 19.75 4.03 35.30 3.35
2796 3936 6.560003 TGGTGGATATATCAACAACTCTGT 57.440 37.500 19.75 0.00 37.39 3.41
2797 3937 6.582636 TGGTGGATATATCAACAACTCTGTC 58.417 40.000 19.75 3.02 33.45 3.51
2798 3938 5.992217 GGTGGATATATCAACAACTCTGTCC 59.008 44.000 19.75 0.00 33.45 4.02
2799 3939 5.992217 GTGGATATATCAACAACTCTGTCCC 59.008 44.000 14.41 0.00 33.45 4.46
2800 3940 5.071788 TGGATATATCAACAACTCTGTCCCC 59.928 44.000 14.60 0.00 33.45 4.81
2801 3941 5.071788 GGATATATCAACAACTCTGTCCCCA 59.928 44.000 14.60 0.00 33.45 4.96
2802 3942 4.927267 ATATCAACAACTCTGTCCCCAA 57.073 40.909 0.00 0.00 33.45 4.12
2803 3943 3.593442 ATCAACAACTCTGTCCCCAAA 57.407 42.857 0.00 0.00 33.45 3.28
2804 3944 3.374042 TCAACAACTCTGTCCCCAAAA 57.626 42.857 0.00 0.00 33.45 2.44
2805 3945 3.909732 TCAACAACTCTGTCCCCAAAAT 58.090 40.909 0.00 0.00 33.45 1.82
2806 3946 5.055265 TCAACAACTCTGTCCCCAAAATA 57.945 39.130 0.00 0.00 33.45 1.40
2807 3947 5.640147 TCAACAACTCTGTCCCCAAAATAT 58.360 37.500 0.00 0.00 33.45 1.28
2808 3948 6.785076 TCAACAACTCTGTCCCCAAAATATA 58.215 36.000 0.00 0.00 33.45 0.86
2809 3949 7.410174 TCAACAACTCTGTCCCCAAAATATAT 58.590 34.615 0.00 0.00 33.45 0.86
2810 3950 7.556275 TCAACAACTCTGTCCCCAAAATATATC 59.444 37.037 0.00 0.00 33.45 1.63
2811 3951 7.213178 ACAACTCTGTCCCCAAAATATATCT 57.787 36.000 0.00 0.00 0.00 1.98
2812 3952 8.331931 ACAACTCTGTCCCCAAAATATATCTA 57.668 34.615 0.00 0.00 0.00 1.98
2813 3953 8.778059 ACAACTCTGTCCCCAAAATATATCTAA 58.222 33.333 0.00 0.00 0.00 2.10
2814 3954 9.799106 CAACTCTGTCCCCAAAATATATCTAAT 57.201 33.333 0.00 0.00 0.00 1.73
2815 3955 9.799106 AACTCTGTCCCCAAAATATATCTAATG 57.201 33.333 0.00 0.00 0.00 1.90
2816 3956 8.386264 ACTCTGTCCCCAAAATATATCTAATGG 58.614 37.037 0.00 0.00 0.00 3.16
2817 3957 8.287904 TCTGTCCCCAAAATATATCTAATGGT 57.712 34.615 0.00 0.00 0.00 3.55
2937 4372 7.273164 TGAAGTTTGCTTACATGATTTATTGCG 59.727 33.333 0.00 0.00 34.61 4.85
2989 4424 4.746729 TCTTTCATTATGTGCATGTTGCC 58.253 39.130 0.00 0.00 44.23 4.52
3114 4978 3.068560 GGTTTCCGTGTGTGTAAGCATA 58.931 45.455 0.00 0.00 0.00 3.14
3121 4985 5.126545 TCCGTGTGTGTAAGCATAGAGTATT 59.873 40.000 0.00 0.00 0.00 1.89
3122 4986 5.810587 CCGTGTGTGTAAGCATAGAGTATTT 59.189 40.000 0.00 0.00 0.00 1.40
3174 5038 5.308497 TCATGGACAACTTAACCTTGGTAGA 59.692 40.000 0.00 0.00 32.26 2.59
3210 5095 2.407562 TGCTCCCTCACCTATATTGCA 58.592 47.619 0.00 0.00 0.00 4.08
3213 5098 3.744660 CTCCCTCACCTATATTGCAACC 58.255 50.000 0.00 0.00 0.00 3.77
3216 5101 3.070446 CCCTCACCTATATTGCAACCGTA 59.930 47.826 0.00 0.00 0.00 4.02
3224 5109 8.832521 CACCTATATTGCAACCGTATTTCTTAA 58.167 33.333 0.00 0.00 0.00 1.85
3225 5110 9.569122 ACCTATATTGCAACCGTATTTCTTAAT 57.431 29.630 0.00 0.00 0.00 1.40
3234 5119 5.624292 ACCGTATTTCTTAATTGTGAACGC 58.376 37.500 0.00 0.00 0.00 4.84
3246 5131 0.993746 GTGAACGCTTGCTTTGCTCG 60.994 55.000 0.00 0.00 0.00 5.03
3256 5141 1.605232 TGCTTTGCTCGCCATGATATG 59.395 47.619 0.00 0.00 0.00 1.78
3267 5152 3.059120 CGCCATGATATGAACTGAAGCTG 60.059 47.826 0.00 0.00 0.00 4.24
3269 5154 4.337555 GCCATGATATGAACTGAAGCTGTT 59.662 41.667 0.00 0.00 0.00 3.16
3289 5233 6.037610 GCTGTTTCCTGTAGATGATTAACTGG 59.962 42.308 0.00 0.00 34.52 4.00
3290 5234 5.880332 TGTTTCCTGTAGATGATTAACTGGC 59.120 40.000 0.00 0.00 33.57 4.85
3389 5335 1.676014 GCTGCGAACTACCTGGACATT 60.676 52.381 0.00 0.00 0.00 2.71
3548 5494 2.948386 GGCCTTTGAGTGAAGGTCC 58.052 57.895 0.00 4.08 43.98 4.46
3550 5496 0.034896 GCCTTTGAGTGAAGGTCCGA 59.965 55.000 5.64 0.00 46.43 4.55
3616 5562 3.318384 TGCCTGGGAGCAGCGTTA 61.318 61.111 0.00 0.00 38.00 3.18
3618 5564 2.399356 GCCTGGGAGCAGCGTTAAC 61.399 63.158 0.00 0.00 0.00 2.01
3620 5566 2.047655 TGGGAGCAGCGTTAACCG 60.048 61.111 0.00 0.00 40.40 4.44
3621 5567 2.047560 GGGAGCAGCGTTAACCGT 60.048 61.111 0.00 0.00 39.32 4.83
3643 5589 2.971660 TTGTGGTTCTGAGACAACGA 57.028 45.000 0.00 0.00 0.00 3.85
3645 5591 3.026630 TGTGGTTCTGAGACAACGATC 57.973 47.619 0.00 0.00 0.00 3.69
3679 5625 2.610438 AGTAGGTTCTGGTTCCGGTA 57.390 50.000 0.00 0.00 0.00 4.02
3712 5658 1.457346 CTCACCATTTGGCTGACTCC 58.543 55.000 0.00 0.00 39.32 3.85
3803 5749 6.094881 GGTATGCTGGTTATTCTGCACTAAAA 59.905 38.462 0.00 0.00 42.68 1.52
3813 5759 6.910536 ATTCTGCACTAAAATTCTACGGAG 57.089 37.500 0.00 0.00 0.00 4.63
3931 5877 1.729586 TGCTAGGTTGGTGAACTCCT 58.270 50.000 0.00 0.00 32.15 3.69
3932 5878 1.347707 TGCTAGGTTGGTGAACTCCTG 59.652 52.381 0.00 0.00 32.15 3.86
3933 5879 1.946283 GCTAGGTTGGTGAACTCCTGC 60.946 57.143 0.00 0.00 32.15 4.85
3934 5880 1.625818 CTAGGTTGGTGAACTCCTGCT 59.374 52.381 0.00 0.00 32.15 4.24
3935 5881 0.846693 AGGTTGGTGAACTCCTGCTT 59.153 50.000 0.00 0.00 32.15 3.91
3936 5882 1.215423 AGGTTGGTGAACTCCTGCTTT 59.785 47.619 0.00 0.00 32.15 3.51
3937 5883 2.031870 GGTTGGTGAACTCCTGCTTTT 58.968 47.619 0.00 0.00 32.15 2.27
3938 5884 2.430694 GGTTGGTGAACTCCTGCTTTTT 59.569 45.455 0.00 0.00 32.15 1.94
3939 5885 3.447742 GTTGGTGAACTCCTGCTTTTTG 58.552 45.455 0.00 0.00 0.00 2.44
3940 5886 2.031120 TGGTGAACTCCTGCTTTTTGG 58.969 47.619 0.00 0.00 0.00 3.28
3941 5887 2.031870 GGTGAACTCCTGCTTTTTGGT 58.968 47.619 0.00 0.00 0.00 3.67
3942 5888 2.223805 GGTGAACTCCTGCTTTTTGGTG 60.224 50.000 0.00 0.00 0.00 4.17
3946 5892 1.342975 ACTCCTGCTTTTTGGTGGGTT 60.343 47.619 0.00 0.00 0.00 4.11
4005 5972 4.526650 TGTTGGTATCTTGTGCAGTCTCTA 59.473 41.667 0.00 0.00 0.00 2.43
4021 5988 6.908284 GCAGTCTCTAGTTTCTTCTGTATACG 59.092 42.308 0.00 0.00 0.00 3.06
4025 5992 8.667463 GTCTCTAGTTTCTTCTGTATACGTCTT 58.333 37.037 0.00 0.00 0.00 3.01
4026 5993 9.228949 TCTCTAGTTTCTTCTGTATACGTCTTT 57.771 33.333 0.00 0.00 0.00 2.52
4027 5994 9.843334 CTCTAGTTTCTTCTGTATACGTCTTTT 57.157 33.333 0.00 0.00 0.00 2.27
4028 5995 9.837525 TCTAGTTTCTTCTGTATACGTCTTTTC 57.162 33.333 0.00 0.00 0.00 2.29
4029 5996 9.622004 CTAGTTTCTTCTGTATACGTCTTTTCA 57.378 33.333 0.00 0.00 0.00 2.69
4030 5997 8.522178 AGTTTCTTCTGTATACGTCTTTTCAG 57.478 34.615 0.00 0.00 0.00 3.02
4031 5998 7.599245 AGTTTCTTCTGTATACGTCTTTTCAGG 59.401 37.037 0.00 0.00 0.00 3.86
4032 5999 5.408356 TCTTCTGTATACGTCTTTTCAGGC 58.592 41.667 0.00 0.00 0.00 4.85
4033 6000 5.185249 TCTTCTGTATACGTCTTTTCAGGCT 59.815 40.000 0.00 0.00 0.00 4.58
4034 6001 4.995124 TCTGTATACGTCTTTTCAGGCTC 58.005 43.478 0.00 0.00 0.00 4.70
4035 6002 4.705507 TCTGTATACGTCTTTTCAGGCTCT 59.294 41.667 0.00 0.00 0.00 4.09
4045 6012 0.951558 TTCAGGCTCTTGTTTTCGGC 59.048 50.000 0.00 0.00 0.00 5.54
4083 6457 9.485206 TGTTTAGTCACTTTTATGGTAGAGTTC 57.515 33.333 0.00 0.00 0.00 3.01
4120 6494 2.542907 AACCGTGAGCTTTGTGCCG 61.543 57.895 0.00 0.00 44.23 5.69
4135 6509 3.623993 CCGTTTTTGGCCTTTGCG 58.376 55.556 3.32 2.15 38.85 4.85
4136 6510 1.227118 CCGTTTTTGGCCTTTGCGT 60.227 52.632 3.32 0.00 38.85 5.24
4137 6511 0.808060 CCGTTTTTGGCCTTTGCGTT 60.808 50.000 3.32 0.00 38.85 4.84
4138 6512 1.003108 CGTTTTTGGCCTTTGCGTTT 58.997 45.000 3.32 0.00 38.85 3.60
4139 6513 1.395262 CGTTTTTGGCCTTTGCGTTTT 59.605 42.857 3.32 0.00 38.85 2.43
4140 6514 2.159639 CGTTTTTGGCCTTTGCGTTTTT 60.160 40.909 3.32 0.00 38.85 1.94
4141 6515 3.167425 GTTTTTGGCCTTTGCGTTTTTG 58.833 40.909 3.32 0.00 38.85 2.44
4142 6516 1.373570 TTTGGCCTTTGCGTTTTTGG 58.626 45.000 3.32 0.00 38.85 3.28
4143 6517 1.092345 TTGGCCTTTGCGTTTTTGGC 61.092 50.000 3.32 0.00 42.56 4.52
4144 6518 3.329231 GCCTTTGCGTTTTTGGCC 58.671 55.556 0.00 0.00 37.81 5.36
4145 6519 1.227527 GCCTTTGCGTTTTTGGCCT 60.228 52.632 3.32 0.00 37.81 5.19
4146 6520 0.813610 GCCTTTGCGTTTTTGGCCTT 60.814 50.000 3.32 0.00 37.81 4.35
4147 6521 1.662517 CCTTTGCGTTTTTGGCCTTT 58.337 45.000 3.32 0.00 0.00 3.11
4148 6522 1.330213 CCTTTGCGTTTTTGGCCTTTG 59.670 47.619 3.32 0.00 0.00 2.77
4149 6523 0.729690 TTTGCGTTTTTGGCCTTTGC 59.270 45.000 3.32 0.00 0.00 3.68
4166 6540 1.348064 TGCTACACTTGTAGGGTGCT 58.652 50.000 16.38 0.00 46.07 4.40
4184 6558 5.185828 GGGTGCTTTCCAACTCTAATCAAAT 59.814 40.000 0.00 0.00 0.00 2.32
4224 6598 2.233271 CGATACTACCTTCGGGGCTTA 58.767 52.381 0.00 0.00 40.03 3.09
4225 6599 2.624838 CGATACTACCTTCGGGGCTTAA 59.375 50.000 0.00 0.00 40.03 1.85
4226 6600 3.068590 CGATACTACCTTCGGGGCTTAAA 59.931 47.826 0.00 0.00 40.03 1.52
4227 6601 4.262335 CGATACTACCTTCGGGGCTTAAAT 60.262 45.833 0.00 0.00 40.03 1.40
4228 6602 5.047802 CGATACTACCTTCGGGGCTTAAATA 60.048 44.000 0.00 0.00 40.03 1.40
4229 6603 4.684484 ACTACCTTCGGGGCTTAAATAG 57.316 45.455 0.00 0.00 40.03 1.73
4230 6604 4.292643 ACTACCTTCGGGGCTTAAATAGA 58.707 43.478 0.00 0.00 40.03 1.98
4231 6605 3.555527 ACCTTCGGGGCTTAAATAGAC 57.444 47.619 0.00 0.00 40.03 2.59
4232 6606 2.841881 ACCTTCGGGGCTTAAATAGACA 59.158 45.455 0.00 0.00 40.03 3.41
4233 6607 3.264964 ACCTTCGGGGCTTAAATAGACAA 59.735 43.478 0.00 0.00 40.03 3.18
4234 6608 3.877508 CCTTCGGGGCTTAAATAGACAAG 59.122 47.826 0.00 0.00 31.29 3.16
4235 6609 2.914059 TCGGGGCTTAAATAGACAAGC 58.086 47.619 0.00 0.00 45.15 4.01
4244 6618 7.088589 GCTTAAATAGACAAGCAAGGAATCA 57.911 36.000 1.62 0.00 45.20 2.57
4245 6619 7.710896 GCTTAAATAGACAAGCAAGGAATCAT 58.289 34.615 1.62 0.00 45.20 2.45
4246 6620 8.840321 GCTTAAATAGACAAGCAAGGAATCATA 58.160 33.333 1.62 0.00 45.20 2.15
4248 6622 7.814264 AAATAGACAAGCAAGGAATCATAGG 57.186 36.000 0.00 0.00 0.00 2.57
4249 6623 6.753913 ATAGACAAGCAAGGAATCATAGGA 57.246 37.500 0.00 0.00 0.00 2.94
4250 6624 4.775236 AGACAAGCAAGGAATCATAGGAC 58.225 43.478 0.00 0.00 0.00 3.85
4251 6625 4.225942 AGACAAGCAAGGAATCATAGGACA 59.774 41.667 0.00 0.00 0.00 4.02
4252 6626 4.922206 ACAAGCAAGGAATCATAGGACAA 58.078 39.130 0.00 0.00 0.00 3.18
4276 6650 4.637483 TTTTGTCTTCTCTTGTTGCCTG 57.363 40.909 0.00 0.00 0.00 4.85
4277 6651 3.281727 TTGTCTTCTCTTGTTGCCTGT 57.718 42.857 0.00 0.00 0.00 4.00
4278 6652 3.281727 TGTCTTCTCTTGTTGCCTGTT 57.718 42.857 0.00 0.00 0.00 3.16
4279 6653 4.415881 TGTCTTCTCTTGTTGCCTGTTA 57.584 40.909 0.00 0.00 0.00 2.41
4280 6654 4.127171 TGTCTTCTCTTGTTGCCTGTTAC 58.873 43.478 0.00 0.00 0.00 2.50
4281 6655 4.141711 TGTCTTCTCTTGTTGCCTGTTACT 60.142 41.667 0.00 0.00 0.00 2.24
4282 6656 4.212214 GTCTTCTCTTGTTGCCTGTTACTG 59.788 45.833 0.00 0.00 0.00 2.74
4283 6657 3.838244 TCTCTTGTTGCCTGTTACTGT 57.162 42.857 0.00 0.00 0.00 3.55
4284 6658 3.728845 TCTCTTGTTGCCTGTTACTGTC 58.271 45.455 0.00 0.00 0.00 3.51
4285 6659 3.388024 TCTCTTGTTGCCTGTTACTGTCT 59.612 43.478 0.00 0.00 0.00 3.41
4318 6692 2.488153 GCCTGTTAACCACAAAGGCTAG 59.512 50.000 20.99 1.93 41.56 3.42
4361 6735 2.091102 CTTGTGGCAGGCAGGTTTGG 62.091 60.000 0.00 0.00 0.00 3.28
4400 6774 5.801531 TGGAAGCAGAAGACAGTAACTTA 57.198 39.130 0.00 0.00 0.00 2.24
4401 6775 6.169557 TGGAAGCAGAAGACAGTAACTTAA 57.830 37.500 0.00 0.00 0.00 1.85
4403 6777 5.639931 GGAAGCAGAAGACAGTAACTTAAGG 59.360 44.000 7.53 0.00 0.00 2.69
4404 6778 5.153950 AGCAGAAGACAGTAACTTAAGGG 57.846 43.478 7.53 0.00 0.00 3.95
4457 6866 1.305201 AGCAAGTGTGTTGTAACGGG 58.695 50.000 0.00 0.00 0.00 5.28
4460 6869 2.286772 GCAAGTGTGTTGTAACGGGAAG 60.287 50.000 0.00 0.00 0.00 3.46
4495 6904 2.069273 GTTGTCATGGGAGAACACTCG 58.931 52.381 0.00 0.00 44.39 4.18
4504 6913 1.135489 GGAGAACACTCGCGTATGTGA 60.135 52.381 26.20 0.00 37.59 3.58
4505 6914 2.479730 GGAGAACACTCGCGTATGTGAT 60.480 50.000 26.20 18.79 37.59 3.06
4506 6915 2.530177 AGAACACTCGCGTATGTGATG 58.470 47.619 26.20 11.22 37.59 3.07
4507 6916 0.999406 AACACTCGCGTATGTGATGC 59.001 50.000 26.20 0.00 37.59 3.91
4508 6917 0.173481 ACACTCGCGTATGTGATGCT 59.827 50.000 26.20 9.44 37.99 3.79
4509 6918 0.848942 CACTCGCGTATGTGATGCTC 59.151 55.000 18.99 0.00 37.99 4.26
4510 6919 0.455815 ACTCGCGTATGTGATGCTCA 59.544 50.000 5.77 0.00 37.99 4.26
4511 6920 1.135112 ACTCGCGTATGTGATGCTCAA 60.135 47.619 5.77 0.00 37.99 3.02
4512 6921 1.520174 CTCGCGTATGTGATGCTCAAG 59.480 52.381 5.77 0.00 37.99 3.02
4513 6922 1.134175 TCGCGTATGTGATGCTCAAGA 59.866 47.619 5.77 0.00 37.99 3.02
4514 6923 2.130395 CGCGTATGTGATGCTCAAGAT 58.870 47.619 0.00 0.00 37.99 2.40
4515 6924 2.541346 CGCGTATGTGATGCTCAAGATT 59.459 45.455 0.00 0.00 37.99 2.40
4516 6925 3.362401 CGCGTATGTGATGCTCAAGATTC 60.362 47.826 0.00 0.00 37.99 2.52
4517 6926 3.362401 GCGTATGTGATGCTCAAGATTCG 60.362 47.826 0.00 0.00 37.09 3.34
4518 6927 3.798878 CGTATGTGATGCTCAAGATTCGT 59.201 43.478 0.00 0.00 0.00 3.85
4519 6928 4.085363 CGTATGTGATGCTCAAGATTCGTC 60.085 45.833 0.00 0.00 0.00 4.20
4520 6929 3.599730 TGTGATGCTCAAGATTCGTCT 57.400 42.857 0.00 0.00 0.00 4.18
4521 6930 3.256558 TGTGATGCTCAAGATTCGTCTG 58.743 45.455 0.00 0.00 0.00 3.51
4522 6931 3.056607 TGTGATGCTCAAGATTCGTCTGA 60.057 43.478 0.00 0.00 0.00 3.27
4523 6932 3.928992 GTGATGCTCAAGATTCGTCTGAA 59.071 43.478 0.00 0.00 38.76 3.02
4524 6933 3.928992 TGATGCTCAAGATTCGTCTGAAC 59.071 43.478 0.00 0.00 36.81 3.18
4541 6950 8.944212 CGTCTGAACGGAAAATTAAATTTACT 57.056 30.769 0.00 0.00 45.21 2.24
4542 6951 9.047871 CGTCTGAACGGAAAATTAAATTTACTC 57.952 33.333 0.00 0.00 45.21 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.746787 ACCTTGCGACTTTCGGTTTTT 59.253 42.857 0.00 0.00 40.84 1.94
96 97 3.055094 ACTGGTACCATTACTTCAGCAGG 60.055 47.826 16.75 0.90 38.67 4.85
97 98 4.207891 ACTGGTACCATTACTTCAGCAG 57.792 45.455 16.75 1.12 39.86 4.24
100 101 4.360563 CGCTACTGGTACCATTACTTCAG 58.639 47.826 16.75 4.84 0.00 3.02
133 134 2.004808 GCCGTTGGAAGCATTAGCCC 62.005 60.000 0.00 0.00 43.56 5.19
352 523 4.091424 GTTGCAAAATAGTCTAAGCTGCG 58.909 43.478 0.00 0.00 0.00 5.18
406 577 1.332686 CAGTACCGCTACTCGTGCATA 59.667 52.381 0.00 0.00 36.19 3.14
410 581 2.096980 TGAATCAGTACCGCTACTCGTG 59.903 50.000 0.00 0.00 36.19 4.35
431 602 2.094182 CCACACTTACGCACCTACTCAT 60.094 50.000 0.00 0.00 0.00 2.90
474 645 7.392673 AGTCTGCAGATTCTCATGTGTATTTTT 59.607 33.333 21.47 0.00 0.00 1.94
475 646 6.883217 AGTCTGCAGATTCTCATGTGTATTTT 59.117 34.615 21.47 0.00 0.00 1.82
476 647 6.413052 AGTCTGCAGATTCTCATGTGTATTT 58.587 36.000 21.47 0.00 0.00 1.40
478 649 5.363292 AGAGTCTGCAGATTCTCATGTGTAT 59.637 40.000 30.13 10.29 36.56 2.29
482 653 4.341806 CCTAGAGTCTGCAGATTCTCATGT 59.658 45.833 36.40 20.27 39.83 3.21
483 654 4.583907 TCCTAGAGTCTGCAGATTCTCATG 59.416 45.833 36.40 27.03 39.83 3.07
485 656 4.242336 TCCTAGAGTCTGCAGATTCTCA 57.758 45.455 36.40 23.62 39.83 3.27
487 658 6.132658 TGTTATCCTAGAGTCTGCAGATTCT 58.867 40.000 35.13 35.13 42.61 2.40
489 660 5.896678 ACTGTTATCCTAGAGTCTGCAGATT 59.103 40.000 21.47 16.77 0.00 2.40
490 661 5.454062 ACTGTTATCCTAGAGTCTGCAGAT 58.546 41.667 21.47 9.05 0.00 2.90
492 663 5.277586 CGTACTGTTATCCTAGAGTCTGCAG 60.278 48.000 7.63 7.63 0.00 4.41
493 664 4.575236 CGTACTGTTATCCTAGAGTCTGCA 59.425 45.833 1.86 0.00 0.00 4.41
494 665 4.815308 TCGTACTGTTATCCTAGAGTCTGC 59.185 45.833 1.86 0.00 0.00 4.26
495 666 6.050432 ACTCGTACTGTTATCCTAGAGTCTG 58.950 44.000 1.86 0.00 33.01 3.51
496 667 6.237887 ACTCGTACTGTTATCCTAGAGTCT 57.762 41.667 0.00 0.00 33.01 3.24
497 668 6.529463 GACTCGTACTGTTATCCTAGAGTC 57.471 45.833 6.53 6.53 43.93 3.36
498 669 5.987098 TGACTCGTACTGTTATCCTAGAGT 58.013 41.667 0.00 0.00 39.98 3.24
499 670 6.706716 TCATGACTCGTACTGTTATCCTAGAG 59.293 42.308 0.00 0.00 0.00 2.43
503 674 5.194432 ACTCATGACTCGTACTGTTATCCT 58.806 41.667 0.00 0.00 0.00 3.24
510 681 4.622701 TCATGACTCATGACTCGTACTG 57.377 45.455 16.44 0.00 44.60 2.74
519 690 2.635714 GTGCCATGTCATGACTCATGA 58.364 47.619 25.55 16.44 46.84 3.07
522 693 0.607620 TCGTGCCATGTCATGACTCA 59.392 50.000 25.55 14.95 0.00 3.41
523 694 1.002366 GTCGTGCCATGTCATGACTC 58.998 55.000 25.55 12.78 45.08 3.36
550 721 4.689812 GCATTTTATTGGAATGTGCACACA 59.310 37.500 24.37 13.47 46.44 3.72
562 733 5.745294 GTGCACATGAGTAGCATTTTATTGG 59.255 40.000 13.17 0.00 40.78 3.16
572 743 2.807967 TGTTTCAGTGCACATGAGTAGC 59.192 45.455 21.04 8.36 0.00 3.58
575 746 7.772292 AGAATATATGTTTCAGTGCACATGAGT 59.228 33.333 21.04 9.31 35.24 3.41
596 767 2.698274 TGCTACGATGCCTCCAAGAATA 59.302 45.455 0.00 0.00 0.00 1.75
597 768 1.486310 TGCTACGATGCCTCCAAGAAT 59.514 47.619 0.00 0.00 0.00 2.40
615 786 7.384660 TGTGTTCAAATGGATTTCAAATACTGC 59.615 33.333 0.00 0.00 0.00 4.40
638 809 7.350110 ACTTTTTGTGTGACTTTTGATTGTG 57.650 32.000 0.00 0.00 0.00 3.33
639 810 7.095271 CCAACTTTTTGTGTGACTTTTGATTGT 60.095 33.333 0.00 0.00 0.00 2.71
640 811 7.117523 TCCAACTTTTTGTGTGACTTTTGATTG 59.882 33.333 0.00 0.00 0.00 2.67
722 893 1.406614 CCCGCTGAGCATTTCTCTCTT 60.407 52.381 4.88 0.00 42.38 2.85
723 894 0.177604 CCCGCTGAGCATTTCTCTCT 59.822 55.000 4.88 0.00 42.38 3.10
798 971 1.273838 ACTCTGGGCCTTGGAGATGTA 60.274 52.381 21.71 0.00 0.00 2.29
891 1064 1.151474 TGGGGTGGAATGGAAGGGA 60.151 57.895 0.00 0.00 0.00 4.20
900 1243 3.503839 GGTGGTGGTGGGGTGGAA 61.504 66.667 0.00 0.00 0.00 3.53
960 1308 1.228459 GGGGAGCGAGGGTTTTTGT 60.228 57.895 0.00 0.00 0.00 2.83
962 1310 1.228459 GTGGGGAGCGAGGGTTTTT 60.228 57.895 0.00 0.00 0.00 1.94
1289 1664 0.516001 CTCGACCTTGACGAACTCGA 59.484 55.000 6.05 0.00 43.02 4.04
1344 1719 1.116536 GGGAGAGGGGATCGGAAGTC 61.117 65.000 0.00 0.00 0.00 3.01
1431 1888 0.673437 CCAACCGCTCAAAACCACAT 59.327 50.000 0.00 0.00 0.00 3.21
1463 1926 0.601576 TGGTGTCCACAATCGAACCG 60.602 55.000 0.00 0.00 0.00 4.44
1484 1947 3.586174 ACCCTAAACCCTAGAACCAAGAC 59.414 47.826 0.00 0.00 0.00 3.01
1487 1950 5.141910 CAAAACCCTAAACCCTAGAACCAA 58.858 41.667 0.00 0.00 0.00 3.67
1515 1978 3.563223 TCCCATTTCGTAACCCAACAAA 58.437 40.909 0.00 0.00 0.00 2.83
1537 2000 1.108132 TGAACAGCACCTGCAATGCA 61.108 50.000 21.23 7.99 45.92 3.96
1545 2008 2.236146 TCATAACGGATGAACAGCACCT 59.764 45.455 0.15 0.00 41.80 4.00
1643 2106 7.225145 TGCATACATACGACAAATACCCTTAAC 59.775 37.037 0.00 0.00 0.00 2.01
1659 2123 8.454106 GTTCCATCCAATAGATTGCATACATAC 58.546 37.037 0.00 0.00 36.48 2.39
1663 2127 6.882610 TGTTCCATCCAATAGATTGCATAC 57.117 37.500 0.00 0.00 36.48 2.39
1741 2275 7.773690 ACACCTAAATGCTAGTATTAAACAGGG 59.226 37.037 18.76 12.41 0.00 4.45
1742 2276 8.732746 ACACCTAAATGCTAGTATTAAACAGG 57.267 34.615 6.48 12.34 0.00 4.00
1743 2277 9.601217 AGACACCTAAATGCTAGTATTAAACAG 57.399 33.333 6.48 2.77 0.00 3.16
1748 2333 8.924303 ACATCAGACACCTAAATGCTAGTATTA 58.076 33.333 6.48 0.00 0.00 0.98
1753 2338 6.992063 AAACATCAGACACCTAAATGCTAG 57.008 37.500 0.00 0.00 0.00 3.42
1764 2363 7.746475 GCAGTGTTAAATCTAAACATCAGACAC 59.254 37.037 0.00 0.00 38.95 3.67
1767 2366 7.977789 TGCAGTGTTAAATCTAAACATCAGA 57.022 32.000 0.00 0.00 38.95 3.27
1771 2370 9.630098 CAGAATTGCAGTGTTAAATCTAAACAT 57.370 29.630 0.00 0.00 38.95 2.71
1781 2380 8.574251 ACATAATACCAGAATTGCAGTGTTAA 57.426 30.769 0.00 0.00 0.00 2.01
1854 2455 3.441572 GCATGCCTTCACTTACACAGAAT 59.558 43.478 6.36 0.00 0.00 2.40
1967 2631 9.602568 TTTAACAATGCAATGCAGATAATCATT 57.397 25.926 14.98 0.00 43.65 2.57
1968 2632 9.772973 ATTTAACAATGCAATGCAGATAATCAT 57.227 25.926 14.98 0.00 43.65 2.45
2054 2726 1.885887 GCAGACCACCACAAAGCATTA 59.114 47.619 0.00 0.00 0.00 1.90
2111 2783 2.293122 CCGAAAAGGTCATCACAAAGCA 59.707 45.455 0.00 0.00 34.51 3.91
2120 2792 1.002773 ACTAACGCCCGAAAAGGTCAT 59.997 47.619 0.00 0.00 38.74 3.06
2123 2795 0.604511 CCACTAACGCCCGAAAAGGT 60.605 55.000 0.00 0.00 38.74 3.50
2128 2800 1.962306 GTTGCCACTAACGCCCGAA 60.962 57.895 0.00 0.00 0.00 4.30
2161 2834 3.181509 GCACTCTTGTCAGATCATGCAAG 60.182 47.826 13.51 13.51 40.97 4.01
2180 2853 8.030106 AGTTTAACAGACAGATTCTAGTAGCAC 58.970 37.037 0.00 0.00 31.12 4.40
2223 2906 3.011818 CACATGCTTTACAGCCTGATGA 58.988 45.455 12.37 0.00 46.74 2.92
2295 2978 4.568072 ATGTGTCCATGTACAAGGCTTA 57.432 40.909 12.38 0.00 0.00 3.09
2299 2982 6.458751 GCATTCTAATGTGTCCATGTACAAGG 60.459 42.308 10.98 10.98 38.65 3.61
2331 3015 4.935205 AGCTAAACAACGTATGAATCAGCA 59.065 37.500 0.00 0.00 0.00 4.41
2333 3017 7.298122 ACAAAGCTAAACAACGTATGAATCAG 58.702 34.615 0.00 0.00 0.00 2.90
2342 3026 6.480981 ACACATACTACAAAGCTAAACAACGT 59.519 34.615 0.00 0.00 0.00 3.99
2343 3027 6.884187 ACACATACTACAAAGCTAAACAACG 58.116 36.000 0.00 0.00 0.00 4.10
2440 3124 5.486526 GAAGACATATTATGCTCCCTCCTG 58.513 45.833 3.52 0.00 0.00 3.86
2477 3161 8.161699 ACTATTTACAACAAACCTACCAACTG 57.838 34.615 0.00 0.00 0.00 3.16
2579 3406 8.079211 ACAAGACCACAACTGACATAGTATAT 57.921 34.615 0.00 0.00 39.18 0.86
2580 3407 7.396339 AGACAAGACCACAACTGACATAGTATA 59.604 37.037 0.00 0.00 39.18 1.47
2581 3408 6.211584 AGACAAGACCACAACTGACATAGTAT 59.788 38.462 0.00 0.00 39.18 2.12
2623 3608 7.848223 TGACTGAATTTATACACCATGTCTG 57.152 36.000 0.00 0.00 0.00 3.51
2745 3885 8.742125 AGATACTCTGTCCCCAAAATATATCA 57.258 34.615 0.00 0.00 0.00 2.15
2753 3893 5.036916 ACCATTAGATACTCTGTCCCCAAA 58.963 41.667 0.00 0.00 0.00 3.28
2754 3894 4.408921 CACCATTAGATACTCTGTCCCCAA 59.591 45.833 0.00 0.00 0.00 4.12
2755 3895 3.967326 CACCATTAGATACTCTGTCCCCA 59.033 47.826 0.00 0.00 0.00 4.96
2756 3896 3.325135 CCACCATTAGATACTCTGTCCCC 59.675 52.174 0.00 0.00 0.00 4.81
2757 3897 4.223953 TCCACCATTAGATACTCTGTCCC 58.776 47.826 0.00 0.00 0.00 4.46
2758 3898 7.726033 ATATCCACCATTAGATACTCTGTCC 57.274 40.000 0.00 0.00 0.00 4.02
2760 3900 9.997172 TGATATATCCACCATTAGATACTCTGT 57.003 33.333 10.25 0.00 0.00 3.41
2767 3907 9.950496 GAGTTGTTGATATATCCACCATTAGAT 57.050 33.333 12.97 0.00 0.00 1.98
2768 3908 9.159254 AGAGTTGTTGATATATCCACCATTAGA 57.841 33.333 12.97 0.00 0.00 2.10
2769 3909 9.212641 CAGAGTTGTTGATATATCCACCATTAG 57.787 37.037 12.97 0.00 0.00 1.73
2770 3910 8.713971 ACAGAGTTGTTGATATATCCACCATTA 58.286 33.333 12.97 0.00 32.28 1.90
2771 3911 7.577303 ACAGAGTTGTTGATATATCCACCATT 58.423 34.615 12.97 1.10 32.28 3.16
2772 3912 7.141758 ACAGAGTTGTTGATATATCCACCAT 57.858 36.000 12.97 1.24 32.28 3.55
2773 3913 6.408092 GGACAGAGTTGTTGATATATCCACCA 60.408 42.308 12.97 1.29 37.76 4.17
2774 3914 5.992217 GGACAGAGTTGTTGATATATCCACC 59.008 44.000 12.97 1.08 37.76 4.61
2775 3915 5.992217 GGGACAGAGTTGTTGATATATCCAC 59.008 44.000 10.25 9.84 37.76 4.02
2776 3916 5.071788 GGGGACAGAGTTGTTGATATATCCA 59.928 44.000 10.25 0.00 37.76 3.41
2777 3917 5.071788 TGGGGACAGAGTTGTTGATATATCC 59.928 44.000 10.25 0.00 37.76 2.59
2778 3918 6.174720 TGGGGACAGAGTTGTTGATATATC 57.825 41.667 5.73 5.73 37.76 1.63
2779 3919 6.575244 TTGGGGACAGAGTTGTTGATATAT 57.425 37.500 0.00 0.00 44.54 0.86
2780 3920 6.381498 TTTGGGGACAGAGTTGTTGATATA 57.619 37.500 0.00 0.00 44.54 0.86
2781 3921 4.927267 TTGGGGACAGAGTTGTTGATAT 57.073 40.909 0.00 0.00 44.54 1.63
2782 3922 4.715534 TTTGGGGACAGAGTTGTTGATA 57.284 40.909 0.00 0.00 44.54 2.15
2783 3923 3.593442 TTTGGGGACAGAGTTGTTGAT 57.407 42.857 0.00 0.00 44.54 2.57
2784 3924 3.374042 TTTTGGGGACAGAGTTGTTGA 57.626 42.857 0.00 0.00 44.54 3.18
2785 3925 5.982890 ATATTTTGGGGACAGAGTTGTTG 57.017 39.130 0.00 0.00 44.54 3.33
2786 3926 7.643123 AGATATATTTTGGGGACAGAGTTGTT 58.357 34.615 0.00 0.00 44.54 2.83
2787 3927 7.213178 AGATATATTTTGGGGACAGAGTTGT 57.787 36.000 0.00 0.00 44.54 3.32
2788 3928 9.799106 ATTAGATATATTTTGGGGACAGAGTTG 57.201 33.333 0.00 0.00 44.54 3.16
2789 3929 9.799106 CATTAGATATATTTTGGGGACAGAGTT 57.201 33.333 0.00 0.00 44.54 3.01
2790 3930 8.386264 CCATTAGATATATTTTGGGGACAGAGT 58.614 37.037 0.00 0.00 44.54 3.24
2791 3931 8.386264 ACCATTAGATATATTTTGGGGACAGAG 58.614 37.037 4.02 0.00 44.54 3.35
2792 3932 8.287904 ACCATTAGATATATTTTGGGGACAGA 57.712 34.615 4.02 0.00 44.54 3.41
2793 3933 8.796475 CAACCATTAGATATATTTTGGGGACAG 58.204 37.037 4.02 0.00 44.54 3.51
2794 3934 8.506921 TCAACCATTAGATATATTTTGGGGACA 58.493 33.333 4.02 0.00 39.83 4.02
2795 3935 8.934023 TCAACCATTAGATATATTTTGGGGAC 57.066 34.615 4.02 0.00 0.00 4.46
2807 3947 9.913310 TGTCAAACCAATATCAACCATTAGATA 57.087 29.630 0.00 0.00 0.00 1.98
2808 3948 8.821686 TGTCAAACCAATATCAACCATTAGAT 57.178 30.769 0.00 0.00 0.00 1.98
2809 3949 8.821686 ATGTCAAACCAATATCAACCATTAGA 57.178 30.769 0.00 0.00 0.00 2.10
2937 4372 6.457528 GCAGTTCATATTTAAGCAGGACAGTC 60.458 42.308 0.00 0.00 0.00 3.51
2989 4424 6.404708 ACAGGAGCATATACAGCAGATTATG 58.595 40.000 2.26 0.00 0.00 1.90
3096 4958 3.257375 ACTCTATGCTTACACACACGGAA 59.743 43.478 0.00 0.00 0.00 4.30
3114 4978 3.490348 AGCACAACTGCCAAAATACTCT 58.510 40.909 0.00 0.00 45.53 3.24
3121 4985 0.459489 GGACAAGCACAACTGCCAAA 59.541 50.000 0.00 0.00 45.53 3.28
3122 4986 0.395586 AGGACAAGCACAACTGCCAA 60.396 50.000 0.00 0.00 45.53 4.52
3134 4998 3.054434 TCCATGATGGTACCAAGGACAAG 60.054 47.826 20.76 13.00 39.03 3.16
3174 5038 8.523658 GTGAGGGAGCAAAAACTCTTATTTAAT 58.476 33.333 0.00 0.00 36.87 1.40
3182 5063 1.777272 AGGTGAGGGAGCAAAAACTCT 59.223 47.619 0.00 0.00 36.87 3.24
3210 5095 6.072893 AGCGTTCACAATTAAGAAATACGGTT 60.073 34.615 0.00 0.00 32.04 4.44
3213 5098 6.236941 GCAAGCGTTCACAATTAAGAAATACG 60.237 38.462 0.00 0.00 0.00 3.06
3216 5101 5.772521 AGCAAGCGTTCACAATTAAGAAAT 58.227 33.333 0.00 0.00 0.00 2.17
3224 5109 1.067516 AGCAAAGCAAGCGTTCACAAT 59.932 42.857 0.00 0.00 37.01 2.71
3225 5110 0.455410 AGCAAAGCAAGCGTTCACAA 59.545 45.000 0.00 0.00 37.01 3.33
3226 5111 0.029300 GAGCAAAGCAAGCGTTCACA 59.971 50.000 0.00 0.00 37.01 3.58
3227 5112 0.993746 CGAGCAAAGCAAGCGTTCAC 60.994 55.000 0.00 0.00 37.01 3.18
3234 5119 0.454600 ATCATGGCGAGCAAAGCAAG 59.545 50.000 0.00 0.00 36.08 4.01
3246 5131 3.881688 ACAGCTTCAGTTCATATCATGGC 59.118 43.478 0.00 0.00 0.00 4.40
3256 5141 4.632153 TCTACAGGAAACAGCTTCAGTTC 58.368 43.478 0.00 0.00 35.55 3.01
3267 5152 5.297029 GGCCAGTTAATCATCTACAGGAAAC 59.703 44.000 0.00 0.00 0.00 2.78
3269 5154 4.721776 AGGCCAGTTAATCATCTACAGGAA 59.278 41.667 5.01 0.00 0.00 3.36
3289 5233 1.002544 GGGGCATCAGATACAGTAGGC 59.997 57.143 0.00 0.00 0.00 3.93
3290 5234 2.301296 CAGGGGCATCAGATACAGTAGG 59.699 54.545 0.00 0.00 0.00 3.18
3374 5320 3.684697 GCCCCTTAATGTCCAGGTAGTTC 60.685 52.174 0.00 0.00 0.00 3.01
3389 5335 1.306997 CAGGTCCAGGAGCCCCTTA 60.307 63.158 15.46 0.00 42.02 2.69
3548 5494 1.909532 GTTATTCGTGTCACGGACTCG 59.090 52.381 24.33 16.93 46.38 4.18
3550 5496 1.614903 TGGTTATTCGTGTCACGGACT 59.385 47.619 24.33 12.01 42.81 3.85
3613 5559 4.984205 TCAGAACCACAAAAACGGTTAAC 58.016 39.130 0.00 0.00 45.54 2.01
3614 5560 4.942483 TCTCAGAACCACAAAAACGGTTAA 59.058 37.500 0.00 0.00 45.54 2.01
3618 5564 2.680841 TGTCTCAGAACCACAAAAACGG 59.319 45.455 0.00 0.00 0.00 4.44
3620 5566 4.095610 CGTTGTCTCAGAACCACAAAAAC 58.904 43.478 0.00 0.00 31.95 2.43
3621 5567 4.004314 TCGTTGTCTCAGAACCACAAAAA 58.996 39.130 0.00 0.00 31.95 1.94
3643 5589 5.703310 ACCTACTTACATCTTCCCTACGAT 58.297 41.667 0.00 0.00 0.00 3.73
3645 5591 5.593502 AGAACCTACTTACATCTTCCCTACG 59.406 44.000 0.00 0.00 0.00 3.51
3803 5749 3.830755 ACAACACACCTACTCCGTAGAAT 59.169 43.478 2.74 0.00 38.29 2.40
3813 5759 3.188460 CACAGGCATAACAACACACCTAC 59.812 47.826 0.00 0.00 0.00 3.18
3817 5763 3.825308 CATCACAGGCATAACAACACAC 58.175 45.455 0.00 0.00 0.00 3.82
3827 5773 1.201424 TCTCAGAGCATCACAGGCAT 58.799 50.000 0.00 0.00 37.82 4.40
3931 5877 2.622436 CGAAAAACCCACCAAAAAGCA 58.378 42.857 0.00 0.00 0.00 3.91
3932 5878 1.937223 CCGAAAAACCCACCAAAAAGC 59.063 47.619 0.00 0.00 0.00 3.51
3933 5879 2.556257 CCCGAAAAACCCACCAAAAAG 58.444 47.619 0.00 0.00 0.00 2.27
3934 5880 1.209747 CCCCGAAAAACCCACCAAAAA 59.790 47.619 0.00 0.00 0.00 1.94
3935 5881 0.831307 CCCCGAAAAACCCACCAAAA 59.169 50.000 0.00 0.00 0.00 2.44
3936 5882 0.325390 ACCCCGAAAAACCCACCAAA 60.325 50.000 0.00 0.00 0.00 3.28
3937 5883 1.043673 CACCCCGAAAAACCCACCAA 61.044 55.000 0.00 0.00 0.00 3.67
3938 5884 1.455959 CACCCCGAAAAACCCACCA 60.456 57.895 0.00 0.00 0.00 4.17
3939 5885 2.204461 CCACCCCGAAAAACCCACC 61.204 63.158 0.00 0.00 0.00 4.61
3940 5886 1.044231 AACCACCCCGAAAAACCCAC 61.044 55.000 0.00 0.00 0.00 4.61
3941 5887 0.325390 AAACCACCCCGAAAAACCCA 60.325 50.000 0.00 0.00 0.00 4.51
3942 5888 0.831966 AAAACCACCCCGAAAAACCC 59.168 50.000 0.00 0.00 0.00 4.11
3946 5892 0.976073 TGGCAAAACCACCCCGAAAA 60.976 50.000 0.00 0.00 46.36 2.29
3971 5917 6.207417 CACAAGATACCAACACTGGAAAGAAT 59.793 38.462 0.00 0.00 46.92 2.40
3975 5921 3.568007 GCACAAGATACCAACACTGGAAA 59.432 43.478 0.00 0.00 46.92 3.13
4005 5972 7.599245 CCTGAAAAGACGTATACAGAAGAAACT 59.401 37.037 3.32 0.00 0.00 2.66
4021 5988 4.282873 CGAAAACAAGAGCCTGAAAAGAC 58.717 43.478 0.00 0.00 0.00 3.01
4025 5992 1.336755 GCCGAAAACAAGAGCCTGAAA 59.663 47.619 0.00 0.00 0.00 2.69
4026 5993 0.951558 GCCGAAAACAAGAGCCTGAA 59.048 50.000 0.00 0.00 0.00 3.02
4027 5994 1.227999 CGCCGAAAACAAGAGCCTGA 61.228 55.000 0.00 0.00 0.00 3.86
4028 5995 1.207593 CGCCGAAAACAAGAGCCTG 59.792 57.895 0.00 0.00 0.00 4.85
4029 5996 1.966451 CCGCCGAAAACAAGAGCCT 60.966 57.895 0.00 0.00 0.00 4.58
4030 5997 2.258726 ACCGCCGAAAACAAGAGCC 61.259 57.895 0.00 0.00 0.00 4.70
4031 5998 1.082104 CACCGCCGAAAACAAGAGC 60.082 57.895 0.00 0.00 0.00 4.09
4032 5999 1.574428 CCACCGCCGAAAACAAGAG 59.426 57.895 0.00 0.00 0.00 2.85
4033 6000 2.548295 GCCACCGCCGAAAACAAGA 61.548 57.895 0.00 0.00 0.00 3.02
4034 6001 2.050442 GCCACCGCCGAAAACAAG 60.050 61.111 0.00 0.00 0.00 3.16
4035 6002 2.517402 AGCCACCGCCGAAAACAA 60.517 55.556 0.00 0.00 34.57 2.83
4045 6012 2.811431 TGACTAAACAAATCAGCCACCG 59.189 45.455 0.00 0.00 0.00 4.94
4120 6494 3.167425 CAAAAACGCAAAGGCCAAAAAC 58.833 40.909 5.01 0.00 36.38 2.43
4134 6508 2.124122 GTGTAGCAAAGGCCAAAAACG 58.876 47.619 5.01 0.00 42.56 3.60
4135 6509 3.452755 AGTGTAGCAAAGGCCAAAAAC 57.547 42.857 5.01 0.00 42.56 2.43
4136 6510 3.196685 ACAAGTGTAGCAAAGGCCAAAAA 59.803 39.130 5.01 0.00 42.56 1.94
4137 6511 2.763448 ACAAGTGTAGCAAAGGCCAAAA 59.237 40.909 5.01 0.00 42.56 2.44
4138 6512 2.383855 ACAAGTGTAGCAAAGGCCAAA 58.616 42.857 5.01 0.00 42.56 3.28
4139 6513 2.065899 ACAAGTGTAGCAAAGGCCAA 57.934 45.000 5.01 0.00 42.56 4.52
4140 6514 2.552155 CCTACAAGTGTAGCAAAGGCCA 60.552 50.000 5.01 0.00 44.97 5.36
4141 6515 2.084546 CCTACAAGTGTAGCAAAGGCC 58.915 52.381 12.19 0.00 44.97 5.19
4142 6516 2.084546 CCCTACAAGTGTAGCAAAGGC 58.915 52.381 12.19 0.00 44.97 4.35
4143 6517 3.074412 CACCCTACAAGTGTAGCAAAGG 58.926 50.000 12.19 10.36 44.97 3.11
4144 6518 2.484264 GCACCCTACAAGTGTAGCAAAG 59.516 50.000 12.19 4.38 44.97 2.77
4145 6519 2.105821 AGCACCCTACAAGTGTAGCAAA 59.894 45.455 12.19 0.00 44.97 3.68
4146 6520 1.697432 AGCACCCTACAAGTGTAGCAA 59.303 47.619 12.19 0.00 44.97 3.91
4147 6521 1.348064 AGCACCCTACAAGTGTAGCA 58.652 50.000 12.19 0.00 44.97 3.49
4148 6522 2.474410 AAGCACCCTACAAGTGTAGC 57.526 50.000 12.19 3.18 44.97 3.58
4149 6523 3.244422 TGGAAAGCACCCTACAAGTGTAG 60.244 47.826 10.91 10.91 45.68 2.74
4224 6598 7.500559 GTCCTATGATTCCTTGCTTGTCTATTT 59.499 37.037 0.00 0.00 0.00 1.40
4225 6599 6.995091 GTCCTATGATTCCTTGCTTGTCTATT 59.005 38.462 0.00 0.00 0.00 1.73
4226 6600 6.100279 TGTCCTATGATTCCTTGCTTGTCTAT 59.900 38.462 0.00 0.00 0.00 1.98
4227 6601 5.425217 TGTCCTATGATTCCTTGCTTGTCTA 59.575 40.000 0.00 0.00 0.00 2.59
4228 6602 4.225942 TGTCCTATGATTCCTTGCTTGTCT 59.774 41.667 0.00 0.00 0.00 3.41
4229 6603 4.517285 TGTCCTATGATTCCTTGCTTGTC 58.483 43.478 0.00 0.00 0.00 3.18
4230 6604 4.574674 TGTCCTATGATTCCTTGCTTGT 57.425 40.909 0.00 0.00 0.00 3.16
4231 6605 5.188434 TCTTGTCCTATGATTCCTTGCTTG 58.812 41.667 0.00 0.00 0.00 4.01
4232 6606 5.441718 TCTTGTCCTATGATTCCTTGCTT 57.558 39.130 0.00 0.00 0.00 3.91
4233 6607 5.643421 ATCTTGTCCTATGATTCCTTGCT 57.357 39.130 0.00 0.00 0.00 3.91
4234 6608 6.705863 AAATCTTGTCCTATGATTCCTTGC 57.294 37.500 0.00 0.00 33.45 4.01
4235 6609 8.059798 ACAAAATCTTGTCCTATGATTCCTTG 57.940 34.615 0.00 0.00 42.25 3.61
4251 6625 5.595952 AGGCAACAAGAGAAGACAAAATCTT 59.404 36.000 0.00 0.00 46.18 2.40
4252 6626 5.009410 CAGGCAACAAGAGAAGACAAAATCT 59.991 40.000 0.00 0.00 38.33 2.40
4276 6650 6.092807 CAGGCTAAAATCCAGAAGACAGTAAC 59.907 42.308 0.00 0.00 0.00 2.50
4277 6651 6.173339 CAGGCTAAAATCCAGAAGACAGTAA 58.827 40.000 0.00 0.00 0.00 2.24
4278 6652 5.248477 ACAGGCTAAAATCCAGAAGACAGTA 59.752 40.000 0.00 0.00 0.00 2.74
4279 6653 4.042187 ACAGGCTAAAATCCAGAAGACAGT 59.958 41.667 0.00 0.00 0.00 3.55
4280 6654 4.583871 ACAGGCTAAAATCCAGAAGACAG 58.416 43.478 0.00 0.00 0.00 3.51
4281 6655 4.640771 ACAGGCTAAAATCCAGAAGACA 57.359 40.909 0.00 0.00 0.00 3.41
4282 6656 6.127980 GGTTAACAGGCTAAAATCCAGAAGAC 60.128 42.308 8.10 0.00 0.00 3.01
4283 6657 5.944007 GGTTAACAGGCTAAAATCCAGAAGA 59.056 40.000 8.10 0.00 0.00 2.87
4284 6658 5.710099 TGGTTAACAGGCTAAAATCCAGAAG 59.290 40.000 8.10 0.00 0.00 2.85
4285 6659 5.475564 GTGGTTAACAGGCTAAAATCCAGAA 59.524 40.000 8.10 0.00 0.00 3.02
4318 6692 4.948847 AGGCCATTGTGTTTTTCTTCTTC 58.051 39.130 5.01 0.00 0.00 2.87
4347 6721 2.203480 TGACCAAACCTGCCTGCC 60.203 61.111 0.00 0.00 0.00 4.85
4361 6735 4.083271 GCTTCCATTAACTTGTGGACTGAC 60.083 45.833 0.00 0.00 43.85 3.51
4457 6866 4.916870 ACAACGCACTAACCTTTTTCTTC 58.083 39.130 0.00 0.00 0.00 2.87
4460 6869 4.281525 TGACAACGCACTAACCTTTTTC 57.718 40.909 0.00 0.00 0.00 2.29
4514 6923 9.384682 GTAAATTTAATTTTCCGTTCAGACGAA 57.615 29.630 8.28 0.00 41.29 3.85
4515 6924 8.776470 AGTAAATTTAATTTTCCGTTCAGACGA 58.224 29.630 8.28 0.00 41.29 4.20
4516 6925 8.944212 AGTAAATTTAATTTTCCGTTCAGACG 57.056 30.769 8.28 0.00 39.94 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.