Multiple sequence alignment - TraesCS5B01G331600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G331600 chr5B 100.000 4319 0 0 1 4319 515716700 515712382 0.000000e+00 7976.0
1 TraesCS5B01G331600 chr5B 98.678 227 3 0 4093 4319 515704308 515704082 1.870000e-108 403.0
2 TraesCS5B01G331600 chr5B 86.624 314 33 7 1516 1823 11532976 11532666 5.350000e-89 339.0
3 TraesCS5B01G331600 chr5D 92.087 4120 246 32 6 4094 426045063 426040993 0.000000e+00 5729.0
4 TraesCS5B01G331600 chr5D 90.854 2296 181 16 1810 4094 426033986 426031709 0.000000e+00 3049.0
5 TraesCS5B01G331600 chr5D 86.926 1545 139 18 1 1517 426035488 426033979 0.000000e+00 1676.0
6 TraesCS5B01G331600 chr5D 84.507 71 11 0 1088 1158 119659369 119659439 2.150000e-08 71.3
7 TraesCS5B01G331600 chr5A 85.323 913 96 23 2242 3144 540351680 540350796 0.000000e+00 909.0
8 TraesCS5B01G331600 chr5A 85.345 812 90 12 726 1519 540354130 540353330 0.000000e+00 813.0
9 TraesCS5B01G331600 chr5A 86.279 430 57 2 3033 3460 540350784 540350355 2.350000e-127 466.0
10 TraesCS5B01G331600 chr5A 82.891 339 45 4 1 331 540355301 540354968 4.220000e-75 292.0
11 TraesCS5B01G331600 chr1D 95.469 309 8 4 1513 1816 431522428 431522121 5.020000e-134 488.0
12 TraesCS5B01G331600 chr3B 83.260 454 67 7 927 1374 11944271 11943821 4.020000e-110 409.0
13 TraesCS5B01G331600 chr3B 98.667 225 3 0 4095 4319 81746531 81746755 2.420000e-107 399.0
14 TraesCS5B01G331600 chr3B 98.667 225 3 0 4095 4319 715603098 715602874 2.420000e-107 399.0
15 TraesCS5B01G331600 chr3B 87.582 306 29 7 1519 1818 524743835 524743533 3.200000e-91 346.0
16 TraesCS5B01G331600 chr3B 83.033 389 49 9 3352 3738 11934450 11934077 1.920000e-88 337.0
17 TraesCS5B01G331600 chr1B 97.881 236 3 2 4086 4319 334868480 334868715 1.450000e-109 407.0
18 TraesCS5B01G331600 chr1B 98.667 225 3 0 4095 4319 115592432 115592208 2.420000e-107 399.0
19 TraesCS5B01G331600 chr1B 98.238 227 4 0 4093 4319 334885265 334885491 8.700000e-107 398.0
20 TraesCS5B01G331600 chr6B 97.835 231 4 1 4090 4319 520279560 520279790 8.700000e-107 398.0
21 TraesCS5B01G331600 chr4B 98.238 227 4 0 4093 4319 543875981 543875755 8.700000e-107 398.0
22 TraesCS5B01G331600 chr4B 87.582 306 32 5 1516 1816 549200364 549200060 2.470000e-92 350.0
23 TraesCS5B01G331600 chr7B 96.266 241 6 3 4080 4319 173397605 173397367 4.050000e-105 392.0
24 TraesCS5B01G331600 chr7B 87.622 307 26 7 1521 1817 715263037 715262733 3.200000e-91 346.0
25 TraesCS5B01G331600 chr7B 88.158 76 3 1 1311 1380 645437217 645437142 7.700000e-13 86.1
26 TraesCS5B01G331600 chr3D 87.908 306 31 4 1516 1816 420987541 420987237 5.310000e-94 355.0
27 TraesCS5B01G331600 chr3A 87.622 307 34 3 1516 1818 644530228 644530534 1.910000e-93 353.0
28 TraesCS5B01G331600 chr3A 88.158 76 3 1 1308 1377 588384852 588384927 7.700000e-13 86.1
29 TraesCS5B01G331600 chr6A 87.338 308 30 7 1516 1816 351703531 351703226 1.150000e-90 344.0
30 TraesCS5B01G331600 chr6A 86.842 76 4 1 1308 1377 370232857 370232932 3.580000e-11 80.5
31 TraesCS5B01G331600 chr2B 88.158 76 3 1 1308 1377 76549493 76549568 7.700000e-13 86.1
32 TraesCS5B01G331600 chr1A 86.747 83 4 2 1308 1383 439491623 439491705 7.700000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G331600 chr5B 515712382 515716700 4318 True 7976.0 7976 100.0000 1 4319 1 chr5B.!!$R3 4318
1 TraesCS5B01G331600 chr5D 426040993 426045063 4070 True 5729.0 5729 92.0870 6 4094 1 chr5D.!!$R1 4088
2 TraesCS5B01G331600 chr5D 426031709 426035488 3779 True 2362.5 3049 88.8900 1 4094 2 chr5D.!!$R2 4093
3 TraesCS5B01G331600 chr5A 540350355 540355301 4946 True 620.0 909 84.9595 1 3460 4 chr5A.!!$R1 3459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 881 0.036388 GGAAGATGACCTTGGCGACA 60.036 55.0 0.00 0.0 34.68 4.35 F
1117 1609 0.038599 ACAGGCCATCAAGCACATGA 59.961 50.0 5.01 0.0 0.00 3.07 F
1158 1650 0.329831 ACATCATCCCCCTCCCCAAT 60.330 55.0 0.00 0.0 0.00 3.16 F
1161 1653 0.348730 TCATCCCCCTCCCCAATGTA 59.651 55.0 0.00 0.0 0.00 2.29 F
2795 4695 0.746659 GGGTTATCCATGTTGCTGGC 59.253 55.0 0.00 0.0 36.16 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1985 2494 2.747446 AGGATCGCACAACCATGTAAAC 59.253 45.455 0.0 0.0 37.82 2.01 R
3029 4931 1.016653 GTGAGGGAGCAGAACTTCGC 61.017 60.000 0.0 0.0 0.00 4.70 R
3070 4972 3.503748 AGACAGGAGCAACATAAACAAGC 59.496 43.478 0.0 0.0 0.00 4.01 R
3091 5116 9.482627 ACACAAAAGAGACTAAACAGATAAGAG 57.517 33.333 0.0 0.0 0.00 2.85 R
3745 5772 0.443869 CGAGATGCCAGGTTTGAACG 59.556 55.000 0.0 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.916249 GTCGGTAGTAGCTTTATTCATCGG 59.084 45.833 0.00 0.00 0.00 4.18
33 34 4.823442 TCGGTAGTAGCTTTATTCATCGGA 59.177 41.667 0.00 0.00 0.00 4.55
142 143 0.672401 CCTATGTCGTTGGCGGTTGT 60.672 55.000 0.00 0.00 38.89 3.32
143 144 1.153353 CTATGTCGTTGGCGGTTGTT 58.847 50.000 0.00 0.00 38.89 2.83
173 174 1.152756 AAAAGGGTTGCGGCTCTGT 60.153 52.632 0.00 0.00 0.00 3.41
322 331 2.887152 AGTCAGTTCCAGGAAATTGTGC 59.113 45.455 2.45 4.33 0.00 4.57
344 353 5.536161 TGCTGCTGGTTCTAGAAAAAGAATT 59.464 36.000 6.78 0.00 37.78 2.17
416 704 2.964310 AAGAGCTCGCAGCCATGGT 61.964 57.895 14.67 0.00 43.77 3.55
417 705 2.437359 GAGCTCGCAGCCATGGTT 60.437 61.111 14.67 3.81 43.77 3.67
438 726 2.502510 GAATGTTGCACGCAGCCG 60.503 61.111 3.32 0.00 44.83 5.52
482 770 3.834489 TTGGTTGCAACATTTGTGGAT 57.166 38.095 29.55 0.00 0.00 3.41
484 772 4.944619 TGGTTGCAACATTTGTGGATTA 57.055 36.364 29.55 0.00 0.00 1.75
535 825 2.454941 GGAGGGGTGGAGGAGGAA 59.545 66.667 0.00 0.00 0.00 3.36
576 879 1.602237 GGGAAGATGACCTTGGCGA 59.398 57.895 0.00 0.00 34.68 5.54
578 881 0.036388 GGAAGATGACCTTGGCGACA 60.036 55.000 0.00 0.00 34.68 4.35
705 1187 4.807039 GCGCCCTGGCATTTGCAG 62.807 66.667 9.17 0.61 44.36 4.41
706 1188 4.137872 CGCCCTGGCATTTGCAGG 62.138 66.667 9.17 9.00 44.36 4.85
707 1189 2.999063 GCCCTGGCATTTGCAGGT 60.999 61.111 2.58 0.00 44.36 4.00
708 1190 2.975536 CCCTGGCATTTGCAGGTG 59.024 61.111 15.28 0.00 44.36 4.00
709 1191 1.909781 CCCTGGCATTTGCAGGTGT 60.910 57.895 15.28 0.00 44.36 4.16
710 1192 0.611618 CCCTGGCATTTGCAGGTGTA 60.612 55.000 15.28 0.00 44.36 2.90
711 1193 0.813184 CCTGGCATTTGCAGGTGTAG 59.187 55.000 4.74 2.52 44.36 2.74
712 1194 0.171903 CTGGCATTTGCAGGTGTAGC 59.828 55.000 4.74 0.00 44.36 3.58
713 1195 1.137404 GGCATTTGCAGGTGTAGCG 59.863 57.895 4.74 0.00 44.36 4.26
714 1196 1.586154 GGCATTTGCAGGTGTAGCGT 61.586 55.000 4.74 0.00 44.36 5.07
715 1197 0.454957 GCATTTGCAGGTGTAGCGTG 60.455 55.000 0.00 0.00 41.59 5.34
716 1198 0.168788 CATTTGCAGGTGTAGCGTGG 59.831 55.000 0.00 0.00 33.87 4.94
717 1199 1.586154 ATTTGCAGGTGTAGCGTGGC 61.586 55.000 0.00 0.00 33.87 5.01
760 1242 2.753849 GGCGCCCTTGCATTGGTA 60.754 61.111 18.11 0.00 37.32 3.25
790 1272 2.888447 GCGCATGGGAGGGAGCTAT 61.888 63.158 14.90 0.00 0.00 2.97
800 1282 3.537874 GGAGCTATGCGACCGGGT 61.538 66.667 6.32 0.00 0.00 5.28
808 1290 2.668550 GCGACCGGGTGAAGCTTT 60.669 61.111 3.30 0.00 0.00 3.51
933 1425 2.167037 CCCCCAAACTCCCCCTTCA 61.167 63.158 0.00 0.00 0.00 3.02
939 1431 0.400594 AAACTCCCCCTTCACCTTCG 59.599 55.000 0.00 0.00 0.00 3.79
986 1478 2.822643 CTAGCCACCCCAGTCTCCCA 62.823 65.000 0.00 0.00 0.00 4.37
1007 1499 2.671177 CGATCGGATCAATGGCGGC 61.671 63.158 17.53 0.00 0.00 6.53
1082 1574 1.630878 GGAGTTTGTGGTGGAGGAGAT 59.369 52.381 0.00 0.00 0.00 2.75
1102 1594 1.448540 GTGGCGATGGAGTCACAGG 60.449 63.158 0.00 0.00 45.32 4.00
1117 1609 0.038599 ACAGGCCATCAAGCACATGA 59.961 50.000 5.01 0.00 0.00 3.07
1158 1650 0.329831 ACATCATCCCCCTCCCCAAT 60.330 55.000 0.00 0.00 0.00 3.16
1161 1653 0.348730 TCATCCCCCTCCCCAATGTA 59.651 55.000 0.00 0.00 0.00 2.29
1163 1655 1.788915 CATCCCCCTCCCCAATGTAAT 59.211 52.381 0.00 0.00 0.00 1.89
1167 1659 1.780309 CCCCTCCCCAATGTAATAGCA 59.220 52.381 0.00 0.00 0.00 3.49
1191 1683 2.601240 TCCTTGCCATGGTCATCAAA 57.399 45.000 14.67 0.00 0.00 2.69
1243 1735 1.754745 GAAGCCACAGACTCCACCA 59.245 57.895 0.00 0.00 0.00 4.17
1352 1844 0.778078 TTTCCATCCAACCCTCCCCA 60.778 55.000 0.00 0.00 0.00 4.96
1377 1869 4.634883 CGTGCTCCTTCTAGTTAGTACTCA 59.365 45.833 0.00 0.00 35.78 3.41
1385 1880 6.834451 CCTTCTAGTTAGTACTCATCAAGGGA 59.166 42.308 0.00 0.00 35.78 4.20
1415 1910 3.694566 CCTGCTATTTAGAGGCGGTTTTT 59.305 43.478 0.00 0.00 0.00 1.94
1510 2012 3.442625 GGCATTGTTGGGTTAGGAACTAC 59.557 47.826 0.00 0.00 42.67 2.73
1524 2026 3.779738 AGGAACTACGTAGTACTCCCTCT 59.220 47.826 30.14 17.10 45.11 3.69
1559 2061 5.415701 ACAAGGCCACAAACTCATATTACAG 59.584 40.000 5.01 0.00 0.00 2.74
1567 2069 7.556275 CCACAAACTCATATTACAGGTACCAAT 59.444 37.037 15.94 7.92 0.00 3.16
1617 2119 9.454859 AAATCAACTTTTCTCTTCCTATACTGG 57.545 33.333 0.00 0.00 0.00 4.00
1667 2169 3.282885 GAAAGGGTAGGAAGCTGATTGG 58.717 50.000 0.00 0.00 0.00 3.16
1714 2220 7.218204 GCATGTTTTAAATAGGTTGCTAGTTCG 59.782 37.037 0.00 0.00 0.00 3.95
1720 2226 8.836268 TTAAATAGGTTGCTAGTTCGAGAAAA 57.164 30.769 0.00 0.00 0.00 2.29
1755 2261 2.631062 TGTCTCGATTACTGTTGGTGGT 59.369 45.455 0.00 0.00 0.00 4.16
1775 2281 5.643777 GTGGTCTTGTATAGATGCAAAGTGT 59.356 40.000 0.00 0.00 34.79 3.55
1789 2295 9.113838 AGATGCAAAGTGTATTTTCTATAGTGG 57.886 33.333 0.00 0.00 0.00 4.00
1808 2314 6.321821 AGTGGCCTTGTATAAGTAAATGGA 57.678 37.500 3.32 0.00 31.80 3.41
1832 2338 3.057736 GGAGTACTGTAGACTCGTTGCAA 60.058 47.826 0.00 0.00 43.62 4.08
1853 2359 9.591792 TTGCAAGTACTCTGATATATGATATGC 57.408 33.333 0.00 0.00 0.00 3.14
1869 2375 9.750125 ATATGATATGCATTATATGTTCGTCGT 57.250 29.630 3.54 0.00 38.44 4.34
1985 2494 9.903682 CTAATTTCTAGGTTAATTGCCATCATG 57.096 33.333 4.12 0.00 0.00 3.07
2136 4025 7.900782 ACGCTAATATTTTCAGTGTTGTACT 57.099 32.000 0.00 0.00 41.36 2.73
2223 4116 6.030228 GCTTAGTTAAATGCACCTAGCTTTG 58.970 40.000 0.00 0.00 45.94 2.77
2229 4122 1.790755 TGCACCTAGCTTTGTACACG 58.209 50.000 0.00 0.00 45.94 4.49
2326 4224 9.176460 TGATAACATTTGACTATCTGCATTTCA 57.824 29.630 0.00 0.00 0.00 2.69
2329 4227 7.634671 ACATTTGACTATCTGCATTTCATCA 57.365 32.000 0.00 0.00 0.00 3.07
2369 4267 8.886719 TGAACTATCTGACTTGCATTTCATTAG 58.113 33.333 0.00 1.12 0.00 1.73
2437 4335 4.081198 ACATCAACATGGTTTGGTTGTTGT 60.081 37.500 12.76 12.76 46.43 3.32
2453 4351 4.199432 TGTTGTTTTGTGATGGCTTGTT 57.801 36.364 0.00 0.00 0.00 2.83
2487 4385 7.182361 TGATGTCATTTCTATTCGATGCTTC 57.818 36.000 0.00 0.00 0.00 3.86
2585 4483 4.584325 TGTAAGGCATGTGAGCTTTCTTTT 59.416 37.500 0.00 0.00 35.34 2.27
2598 4496 6.264292 TGAGCTTTCTTTTATGCTTTGTGGTA 59.736 34.615 0.00 0.00 35.76 3.25
2648 4546 7.170489 CACATATGAGAATGCTACTGTTAGTGG 59.830 40.741 10.38 0.00 0.00 4.00
2769 4669 7.417570 GCTGGTAGGTCTATTGTTGTACATAGT 60.418 40.741 0.00 0.00 0.00 2.12
2795 4695 0.746659 GGGTTATCCATGTTGCTGGC 59.253 55.000 0.00 0.00 36.16 4.85
2796 4696 1.473258 GGTTATCCATGTTGCTGGCA 58.527 50.000 0.00 0.00 36.16 4.92
2798 4698 2.223876 GGTTATCCATGTTGCTGGCATG 60.224 50.000 0.00 8.17 42.29 4.06
2890 4790 7.604164 CAGTATCATGTAAGACAACTCACCTTT 59.396 37.037 0.00 0.00 0.00 3.11
2946 4847 6.638468 GCTTAATATGAAATTTTGCTCCCTCG 59.362 38.462 0.00 0.00 0.00 4.63
2996 4897 2.405892 ATGAACTTTTGCACGCTCAC 57.594 45.000 0.00 0.00 0.00 3.51
3070 4972 5.698089 CACTATGTGGGTGATGCAACTATAG 59.302 44.000 0.00 0.00 36.89 1.31
3091 5116 3.503748 AGCTTGTTTATGTTGCTCCTGTC 59.496 43.478 0.00 0.00 0.00 3.51
3232 5257 0.947244 CGCTGACATGATAAAGGGGC 59.053 55.000 0.00 0.00 0.00 5.80
3304 5329 4.263243 CCAAAGAGGAAGTGGATGAACTCT 60.263 45.833 0.00 0.00 41.22 3.24
3316 5341 4.533707 TGGATGAACTCTGGATGAAGAACT 59.466 41.667 0.00 0.00 0.00 3.01
3350 5376 2.766828 AGTGAAGATCGAGGGGGTAAAG 59.233 50.000 0.00 0.00 0.00 1.85
3425 5452 4.826274 TTGTTAATGCCTGAGAGTAGCT 57.174 40.909 0.00 0.00 0.00 3.32
3431 5458 5.365021 AATGCCTGAGAGTAGCTGTTAAT 57.635 39.130 0.00 0.00 0.00 1.40
3437 5464 5.517054 CCTGAGAGTAGCTGTTAATCGTTTC 59.483 44.000 0.00 0.00 31.78 2.78
3448 5475 6.474102 GCTGTTAATCGTTTCTGGTTCAAAAA 59.526 34.615 0.00 0.00 0.00 1.94
3478 5505 8.607459 GCTAGTAGTAAGTCGTAAGTACATTGA 58.393 37.037 0.00 0.00 39.48 2.57
3481 5508 8.619546 AGTAGTAAGTCGTAAGTACATTGATCC 58.380 37.037 0.00 0.00 39.48 3.36
3497 5524 2.228059 GATCCGGTTCCAGTCGATCTA 58.772 52.381 0.00 0.00 0.00 1.98
3523 5550 3.118038 GGTTTACCATATGGCTCACTCCA 60.118 47.826 22.18 0.00 39.32 3.86
3575 5602 6.030228 GCACTCTTGAACTTGGTTATTATGC 58.970 40.000 0.00 0.00 0.00 3.14
3581 5608 6.320494 TGAACTTGGTTATTATGCGTTTGT 57.680 33.333 0.00 0.00 0.00 2.83
3584 5611 6.079424 ACTTGGTTATTATGCGTTTGTTGT 57.921 33.333 0.00 0.00 0.00 3.32
3606 5633 5.112686 GTTGGTTGTTGGTTATTCTGCAAA 58.887 37.500 0.00 0.00 0.00 3.68
3611 5638 8.153550 TGGTTGTTGGTTATTCTGCAAATAATT 58.846 29.630 13.50 0.00 0.00 1.40
3663 5690 3.942829 TGATGCGTTGAGATTCTTCCTT 58.057 40.909 0.00 0.00 0.00 3.36
3735 5762 2.527624 TCCAGGTGAGCTGCCACT 60.528 61.111 6.05 0.33 37.24 4.00
3745 5772 1.943340 GAGCTGCCACTATAGGTTTGC 59.057 52.381 4.43 1.76 0.00 3.68
3752 5779 3.189702 GCCACTATAGGTTTGCGTTCAAA 59.810 43.478 4.43 0.00 39.67 2.69
3811 5838 1.956477 GCTTTCCTTCTGCCTTGTTCA 59.044 47.619 0.00 0.00 0.00 3.18
3820 5847 0.546122 TGCCTTGTTCAGTGGTGTCT 59.454 50.000 0.00 0.00 0.00 3.41
3853 5880 4.520111 TGCATGTCACCCTATTCAATATGC 59.480 41.667 0.00 0.00 38.95 3.14
3854 5881 4.763793 GCATGTCACCCTATTCAATATGCT 59.236 41.667 0.00 0.00 36.42 3.79
3855 5882 5.335426 GCATGTCACCCTATTCAATATGCTG 60.335 44.000 0.00 0.00 36.42 4.41
3892 5919 4.051922 GGGCAACTCTAACATAGATCACG 58.948 47.826 0.00 0.00 33.66 4.35
3910 5937 1.065031 CGAAATCGCCCGCAAAAGTG 61.065 55.000 0.00 0.00 0.00 3.16
3949 5976 1.191535 TGGTCATCCAACTAGGGTCG 58.808 55.000 0.00 0.00 41.25 4.79
3966 5993 2.550208 GGTCGTCAAATTGGTCAGGACT 60.550 50.000 0.00 0.00 0.00 3.85
3986 6014 4.180723 ACTGGTCTAAATCCCCCAAACTA 58.819 43.478 0.00 0.00 0.00 2.24
4018 6046 0.889186 GGTGACGTTTGTGGGCATCT 60.889 55.000 0.00 0.00 0.00 2.90
4081 6109 5.536916 TGTATTTTTCCTTGTTCCGTCCATT 59.463 36.000 0.00 0.00 0.00 3.16
4094 6122 5.745312 TCCGTCCATTCTCATATGCTATT 57.255 39.130 0.00 0.00 0.00 1.73
4095 6123 5.482006 TCCGTCCATTCTCATATGCTATTG 58.518 41.667 0.00 0.00 0.00 1.90
4096 6124 5.245977 TCCGTCCATTCTCATATGCTATTGA 59.754 40.000 0.00 0.00 0.00 2.57
4097 6125 5.934043 CCGTCCATTCTCATATGCTATTGAA 59.066 40.000 0.00 0.00 0.00 2.69
4098 6126 6.427853 CCGTCCATTCTCATATGCTATTGAAA 59.572 38.462 0.00 0.00 0.00 2.69
4099 6127 7.360691 CCGTCCATTCTCATATGCTATTGAAAG 60.361 40.741 0.00 0.00 0.00 2.62
4100 6128 7.172190 CGTCCATTCTCATATGCTATTGAAAGT 59.828 37.037 0.00 0.00 0.00 2.66
4101 6129 8.288208 GTCCATTCTCATATGCTATTGAAAGTG 58.712 37.037 0.00 0.00 0.00 3.16
4102 6130 7.040892 TCCATTCTCATATGCTATTGAAAGTGC 60.041 37.037 0.00 0.00 0.00 4.40
4103 6131 7.255346 CCATTCTCATATGCTATTGAAAGTGCA 60.255 37.037 0.00 0.00 39.83 4.57
4104 6132 7.628769 TTCTCATATGCTATTGAAAGTGCAA 57.371 32.000 0.00 0.00 38.96 4.08
4105 6133 7.019774 TCTCATATGCTATTGAAAGTGCAAC 57.980 36.000 0.00 0.00 38.96 4.17
4118 6146 2.622064 GTGCAACTATCCCTAGGTGG 57.378 55.000 8.29 0.00 42.07 4.61
4119 6147 1.838077 GTGCAACTATCCCTAGGTGGT 59.162 52.381 8.29 0.00 42.07 4.16
4120 6148 2.238898 GTGCAACTATCCCTAGGTGGTT 59.761 50.000 8.29 1.46 42.07 3.67
4121 6149 2.916934 TGCAACTATCCCTAGGTGGTTT 59.083 45.455 8.29 0.00 42.07 3.27
4122 6150 3.332485 TGCAACTATCCCTAGGTGGTTTT 59.668 43.478 8.29 0.00 42.07 2.43
4123 6151 3.694566 GCAACTATCCCTAGGTGGTTTTG 59.305 47.826 8.29 6.66 42.07 2.44
4124 6152 4.270008 CAACTATCCCTAGGTGGTTTTGG 58.730 47.826 8.29 0.00 38.75 3.28
4125 6153 3.538387 ACTATCCCTAGGTGGTTTTGGT 58.462 45.455 8.29 0.00 0.00 3.67
4126 6154 4.702196 ACTATCCCTAGGTGGTTTTGGTA 58.298 43.478 8.29 0.00 0.00 3.25
4127 6155 5.102967 ACTATCCCTAGGTGGTTTTGGTAA 58.897 41.667 8.29 0.00 0.00 2.85
4128 6156 5.734634 ACTATCCCTAGGTGGTTTTGGTAAT 59.265 40.000 8.29 0.00 0.00 1.89
4129 6157 5.546035 ATCCCTAGGTGGTTTTGGTAATT 57.454 39.130 8.29 0.00 0.00 1.40
4130 6158 4.925836 TCCCTAGGTGGTTTTGGTAATTC 58.074 43.478 8.29 0.00 0.00 2.17
4131 6159 4.021229 CCCTAGGTGGTTTTGGTAATTCC 58.979 47.826 8.29 0.00 0.00 3.01
4132 6160 4.264217 CCCTAGGTGGTTTTGGTAATTCCT 60.264 45.833 8.29 0.00 37.07 3.36
4133 6161 5.044698 CCCTAGGTGGTTTTGGTAATTCCTA 60.045 44.000 8.29 0.00 37.07 2.94
4134 6162 6.486941 CCTAGGTGGTTTTGGTAATTCCTAA 58.513 40.000 0.00 0.00 37.07 2.69
4135 6163 6.376299 CCTAGGTGGTTTTGGTAATTCCTAAC 59.624 42.308 0.00 0.00 37.07 2.34
4136 6164 5.707495 AGGTGGTTTTGGTAATTCCTAACA 58.293 37.500 0.00 0.00 35.06 2.41
4137 6165 6.137559 AGGTGGTTTTGGTAATTCCTAACAA 58.862 36.000 0.00 0.00 35.31 2.83
4138 6166 6.041182 AGGTGGTTTTGGTAATTCCTAACAAC 59.959 38.462 0.00 0.00 36.92 3.32
4139 6167 6.183360 GGTGGTTTTGGTAATTCCTAACAACA 60.183 38.462 14.34 0.00 36.92 3.33
4140 6168 7.438564 GTGGTTTTGGTAATTCCTAACAACAT 58.561 34.615 0.00 0.00 36.92 2.71
4141 6169 8.578151 GTGGTTTTGGTAATTCCTAACAACATA 58.422 33.333 0.00 0.00 36.92 2.29
4142 6170 9.315363 TGGTTTTGGTAATTCCTAACAACATAT 57.685 29.630 0.00 0.00 36.92 1.78
4146 6174 9.914834 TTTGGTAATTCCTAACAACATATAGCT 57.085 29.630 0.00 0.00 36.92 3.32
4147 6175 9.555727 TTGGTAATTCCTAACAACATATAGCTC 57.444 33.333 0.00 0.00 31.99 4.09
4148 6176 8.710239 TGGTAATTCCTAACAACATATAGCTCA 58.290 33.333 0.00 0.00 37.07 4.26
4149 6177 9.726438 GGTAATTCCTAACAACATATAGCTCAT 57.274 33.333 0.00 0.00 0.00 2.90
4152 6180 9.851686 AATTCCTAACAACATATAGCTCATTGA 57.148 29.630 0.00 0.00 0.00 2.57
4153 6181 8.893219 TTCCTAACAACATATAGCTCATTGAG 57.107 34.615 9.40 9.40 0.00 3.02
4170 6198 8.442632 CTCATTGAGCTAACATATTTCCAAGA 57.557 34.615 0.00 0.00 0.00 3.02
4171 6199 8.213518 TCATTGAGCTAACATATTTCCAAGAC 57.786 34.615 0.00 0.00 0.00 3.01
4172 6200 7.828717 TCATTGAGCTAACATATTTCCAAGACA 59.171 33.333 0.00 0.00 0.00 3.41
4173 6201 7.994425 TTGAGCTAACATATTTCCAAGACAA 57.006 32.000 0.00 0.00 0.00 3.18
4174 6202 7.994425 TGAGCTAACATATTTCCAAGACAAA 57.006 32.000 0.00 0.00 0.00 2.83
4175 6203 7.816640 TGAGCTAACATATTTCCAAGACAAAC 58.183 34.615 0.00 0.00 0.00 2.93
4176 6204 7.665559 TGAGCTAACATATTTCCAAGACAAACT 59.334 33.333 0.00 0.00 0.00 2.66
4177 6205 8.409358 AGCTAACATATTTCCAAGACAAACTT 57.591 30.769 0.00 0.00 39.70 2.66
4178 6206 8.860088 AGCTAACATATTTCCAAGACAAACTTT 58.140 29.630 0.00 0.00 36.61 2.66
4179 6207 9.476202 GCTAACATATTTCCAAGACAAACTTTT 57.524 29.630 0.00 0.00 36.61 2.27
4182 6210 9.533253 AACATATTTCCAAGACAAACTTTTCAG 57.467 29.630 0.00 0.00 36.61 3.02
4183 6211 8.143835 ACATATTTCCAAGACAAACTTTTCAGG 58.856 33.333 0.00 0.00 36.61 3.86
4184 6212 6.790232 ATTTCCAAGACAAACTTTTCAGGA 57.210 33.333 0.00 0.00 36.61 3.86
4185 6213 6.597832 TTTCCAAGACAAACTTTTCAGGAA 57.402 33.333 0.00 0.00 36.12 3.36
4186 6214 6.597832 TTCCAAGACAAACTTTTCAGGAAA 57.402 33.333 0.00 0.00 35.47 3.13
4187 6215 6.597832 TCCAAGACAAACTTTTCAGGAAAA 57.402 33.333 6.97 6.97 36.61 2.29
4200 6228 5.395682 TTCAGGAAAAGCTCAATGAATGG 57.604 39.130 0.00 0.00 30.44 3.16
4201 6229 3.194116 TCAGGAAAAGCTCAATGAATGGC 59.806 43.478 0.00 0.00 0.00 4.40
4202 6230 3.056393 CAGGAAAAGCTCAATGAATGGCA 60.056 43.478 0.00 0.00 0.00 4.92
4203 6231 3.773119 AGGAAAAGCTCAATGAATGGCAT 59.227 39.130 0.00 0.00 39.43 4.40
4204 6232 3.869246 GGAAAAGCTCAATGAATGGCATG 59.131 43.478 0.00 0.00 37.28 4.06
4205 6233 3.536956 AAAGCTCAATGAATGGCATGG 57.463 42.857 0.00 0.00 37.28 3.66
4206 6234 0.750850 AGCTCAATGAATGGCATGGC 59.249 50.000 13.29 13.29 37.28 4.40
4207 6235 0.462375 GCTCAATGAATGGCATGGCA 59.538 50.000 25.52 25.52 37.28 4.92
4208 6236 1.070134 GCTCAATGAATGGCATGGCAT 59.930 47.619 27.75 27.75 37.28 4.40
4209 6237 2.754472 CTCAATGAATGGCATGGCATG 58.246 47.619 32.77 22.99 37.28 4.06
4210 6238 1.414550 TCAATGAATGGCATGGCATGG 59.585 47.619 32.77 19.71 37.28 3.66
4211 6239 1.414550 CAATGAATGGCATGGCATGGA 59.585 47.619 32.77 22.53 37.28 3.41
4212 6240 2.024176 ATGAATGGCATGGCATGGAT 57.976 45.000 32.77 23.60 35.42 3.41
4213 6241 1.044611 TGAATGGCATGGCATGGATG 58.955 50.000 32.77 5.48 0.00 3.51
4214 6242 1.334160 GAATGGCATGGCATGGATGA 58.666 50.000 32.77 5.54 0.00 2.92
4215 6243 1.272490 GAATGGCATGGCATGGATGAG 59.728 52.381 32.77 2.65 0.00 2.90
4216 6244 0.541998 ATGGCATGGCATGGATGAGG 60.542 55.000 31.78 1.89 0.00 3.86
4217 6245 1.152138 GGCATGGCATGGATGAGGA 59.848 57.895 27.48 0.00 0.00 3.71
4218 6246 0.468585 GGCATGGCATGGATGAGGAA 60.469 55.000 27.48 0.00 0.00 3.36
4219 6247 1.405872 GCATGGCATGGATGAGGAAA 58.594 50.000 27.48 0.00 0.00 3.13
4220 6248 1.340248 GCATGGCATGGATGAGGAAAG 59.660 52.381 27.48 0.00 0.00 2.62
4221 6249 2.662866 CATGGCATGGATGAGGAAAGT 58.337 47.619 19.80 0.00 0.00 2.66
4222 6250 2.133281 TGGCATGGATGAGGAAAGTG 57.867 50.000 0.00 0.00 0.00 3.16
4223 6251 1.341285 TGGCATGGATGAGGAAAGTGG 60.341 52.381 0.00 0.00 0.00 4.00
4224 6252 1.064463 GGCATGGATGAGGAAAGTGGA 60.064 52.381 0.00 0.00 0.00 4.02
4225 6253 2.423947 GGCATGGATGAGGAAAGTGGAT 60.424 50.000 0.00 0.00 0.00 3.41
4226 6254 2.883386 GCATGGATGAGGAAAGTGGATC 59.117 50.000 0.00 0.00 0.00 3.36
4227 6255 3.484407 CATGGATGAGGAAAGTGGATCC 58.516 50.000 4.20 4.20 37.22 3.36
4228 6256 1.846439 TGGATGAGGAAAGTGGATCCC 59.154 52.381 9.90 0.11 37.71 3.85
4229 6257 2.131023 GGATGAGGAAAGTGGATCCCT 58.869 52.381 9.90 2.84 37.71 4.20
4230 6258 2.105649 GGATGAGGAAAGTGGATCCCTC 59.894 54.545 9.90 7.87 44.08 4.30
4233 6261 3.721087 GAGGAAAGTGGATCCCTCAAA 57.279 47.619 9.90 0.00 43.47 2.69
4234 6262 4.034285 GAGGAAAGTGGATCCCTCAAAA 57.966 45.455 9.90 0.00 43.47 2.44
4235 6263 4.604156 GAGGAAAGTGGATCCCTCAAAAT 58.396 43.478 9.90 0.00 43.47 1.82
4236 6264 5.755849 GAGGAAAGTGGATCCCTCAAAATA 58.244 41.667 9.90 0.00 43.47 1.40
4237 6265 5.510430 AGGAAAGTGGATCCCTCAAAATAC 58.490 41.667 9.90 0.00 37.71 1.89
4238 6266 5.254032 AGGAAAGTGGATCCCTCAAAATACT 59.746 40.000 9.90 0.00 37.71 2.12
4239 6267 6.447084 AGGAAAGTGGATCCCTCAAAATACTA 59.553 38.462 9.90 0.00 37.71 1.82
4240 6268 7.036863 AGGAAAGTGGATCCCTCAAAATACTAA 60.037 37.037 9.90 0.00 37.71 2.24
4241 6269 7.283354 GGAAAGTGGATCCCTCAAAATACTAAG 59.717 40.741 9.90 0.00 0.00 2.18
4242 6270 6.253946 AGTGGATCCCTCAAAATACTAAGG 57.746 41.667 9.90 0.00 0.00 2.69
4243 6271 5.970640 AGTGGATCCCTCAAAATACTAAGGA 59.029 40.000 9.90 0.00 0.00 3.36
4244 6272 6.621514 AGTGGATCCCTCAAAATACTAAGGAT 59.378 38.462 9.90 0.00 35.37 3.24
4245 6273 7.794683 AGTGGATCCCTCAAAATACTAAGGATA 59.205 37.037 9.90 0.00 32.86 2.59
4246 6274 8.437575 GTGGATCCCTCAAAATACTAAGGATAA 58.562 37.037 9.90 0.00 32.86 1.75
4247 6275 9.009675 TGGATCCCTCAAAATACTAAGGATAAA 57.990 33.333 9.90 0.00 32.86 1.40
4248 6276 9.862149 GGATCCCTCAAAATACTAAGGATAAAA 57.138 33.333 0.00 0.00 32.86 1.52
4250 6278 9.868160 ATCCCTCAAAATACTAAGGATAAAAGG 57.132 33.333 0.00 0.00 30.94 3.11
4251 6279 9.064602 TCCCTCAAAATACTAAGGATAAAAGGA 57.935 33.333 0.00 0.00 0.00 3.36
4252 6280 9.868160 CCCTCAAAATACTAAGGATAAAAGGAT 57.132 33.333 0.00 0.00 0.00 3.24
4256 6284 9.750125 CAAAATACTAAGGATAAAAGGATTGGC 57.250 33.333 0.00 0.00 0.00 4.52
4257 6285 9.715119 AAAATACTAAGGATAAAAGGATTGGCT 57.285 29.630 0.00 0.00 0.00 4.75
4258 6286 8.926092 AATACTAAGGATAAAAGGATTGGCTC 57.074 34.615 0.00 0.00 0.00 4.70
4259 6287 6.327386 ACTAAGGATAAAAGGATTGGCTCA 57.673 37.500 0.00 0.00 0.00 4.26
4260 6288 6.731467 ACTAAGGATAAAAGGATTGGCTCAA 58.269 36.000 0.00 0.00 0.00 3.02
4261 6289 6.830838 ACTAAGGATAAAAGGATTGGCTCAAG 59.169 38.462 0.00 0.00 0.00 3.02
4262 6290 3.956848 AGGATAAAAGGATTGGCTCAAGC 59.043 43.478 0.00 0.00 41.14 4.01
4263 6291 3.956848 GGATAAAAGGATTGGCTCAAGCT 59.043 43.478 1.46 0.00 41.70 3.74
4264 6292 4.037327 GGATAAAAGGATTGGCTCAAGCTC 59.963 45.833 1.46 0.00 41.70 4.09
4265 6293 2.592102 AAAGGATTGGCTCAAGCTCA 57.408 45.000 1.46 0.00 41.70 4.26
4266 6294 2.592102 AAGGATTGGCTCAAGCTCAA 57.408 45.000 1.46 5.34 41.70 3.02
4267 6295 2.592102 AGGATTGGCTCAAGCTCAAA 57.408 45.000 1.46 0.00 41.70 2.69
4268 6296 2.880443 AGGATTGGCTCAAGCTCAAAA 58.120 42.857 1.46 0.00 41.70 2.44
4269 6297 2.824341 AGGATTGGCTCAAGCTCAAAAG 59.176 45.455 1.46 0.00 41.70 2.27
4282 6310 4.919677 GCTCAAAAGCTCAAGACTCTAC 57.080 45.455 0.00 0.00 45.55 2.59
4283 6311 4.310769 GCTCAAAAGCTCAAGACTCTACA 58.689 43.478 0.00 0.00 45.55 2.74
4284 6312 4.934602 GCTCAAAAGCTCAAGACTCTACAT 59.065 41.667 0.00 0.00 45.55 2.29
4285 6313 5.411053 GCTCAAAAGCTCAAGACTCTACATT 59.589 40.000 0.00 0.00 45.55 2.71
4286 6314 6.072783 GCTCAAAAGCTCAAGACTCTACATTT 60.073 38.462 0.00 0.00 45.55 2.32
4287 6315 7.521261 GCTCAAAAGCTCAAGACTCTACATTTT 60.521 37.037 0.00 0.00 45.55 1.82
4288 6316 8.902540 TCAAAAGCTCAAGACTCTACATTTTA 57.097 30.769 0.00 0.00 0.00 1.52
4289 6317 8.774586 TCAAAAGCTCAAGACTCTACATTTTAC 58.225 33.333 0.00 0.00 0.00 2.01
4290 6318 8.559536 CAAAAGCTCAAGACTCTACATTTTACA 58.440 33.333 0.00 0.00 0.00 2.41
4291 6319 8.854614 AAAGCTCAAGACTCTACATTTTACAT 57.145 30.769 0.00 0.00 0.00 2.29
4292 6320 8.854614 AAGCTCAAGACTCTACATTTTACATT 57.145 30.769 0.00 0.00 0.00 2.71
4293 6321 8.854614 AGCTCAAGACTCTACATTTTACATTT 57.145 30.769 0.00 0.00 0.00 2.32
4294 6322 9.289782 AGCTCAAGACTCTACATTTTACATTTT 57.710 29.630 0.00 0.00 0.00 1.82
4318 6346 5.731599 GTGATCCAAGATCACATTGAGTC 57.268 43.478 25.48 3.18 45.61 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.422223 CAGCGAATATGGATGTTGTAGTTTC 58.578 40.000 0.00 0.00 0.00 2.78
33 34 5.296780 CCAGCGAATATGGATGTTGTAGTTT 59.703 40.000 0.00 0.00 40.51 2.66
142 143 1.770061 ACCCTTTTCACGTGGGAGTAA 59.230 47.619 17.00 0.00 43.47 2.24
143 144 1.426751 ACCCTTTTCACGTGGGAGTA 58.573 50.000 17.00 0.00 43.47 2.59
173 174 4.465632 AAGCTATACATCCACGTTCACA 57.534 40.909 0.00 0.00 0.00 3.58
322 331 8.512800 GAAAATTCTTTTTCTAGAACCAGCAG 57.487 34.615 4.18 0.00 44.78 4.24
344 353 1.729470 AACCGCGTGTTGCCATGAAA 61.729 50.000 4.92 0.00 42.08 2.69
392 401 2.734673 GCTGCGAGCTCTTGTTCGG 61.735 63.158 12.85 2.16 45.02 4.30
416 704 0.030504 CTGCGTGCAACATTCCACAA 59.969 50.000 0.00 0.00 35.74 3.33
417 705 1.653667 CTGCGTGCAACATTCCACA 59.346 52.632 0.00 0.00 35.74 4.17
482 770 3.486383 CAGTGAGCTTTTTCCCCACTAA 58.514 45.455 2.04 0.00 36.44 2.24
484 772 1.479389 CCAGTGAGCTTTTTCCCCACT 60.479 52.381 0.00 0.00 38.48 4.00
520 808 1.229658 CACTTCCTCCTCCACCCCT 60.230 63.158 0.00 0.00 0.00 4.79
565 855 0.955428 GATGCTTGTCGCCAAGGTCA 60.955 55.000 8.46 0.00 46.72 4.02
576 879 0.252881 TCCTCTCCCCAGATGCTTGT 60.253 55.000 0.00 0.00 0.00 3.16
578 881 1.344191 GCTCCTCTCCCCAGATGCTT 61.344 60.000 0.00 0.00 0.00 3.91
585 888 2.364842 GCTCTGCTCCTCTCCCCA 60.365 66.667 0.00 0.00 0.00 4.96
612 916 0.177141 CTCTCGTCGGACTCCTCTCT 59.823 60.000 6.57 0.00 0.00 3.10
712 1194 3.202001 CAATGGTAGGGCGCCACG 61.202 66.667 30.85 1.74 39.03 4.94
713 1195 2.828549 CCAATGGTAGGGCGCCAC 60.829 66.667 30.85 19.13 39.03 5.01
714 1196 3.334891 ACCAATGGTAGGGCGCCA 61.335 61.111 30.85 7.48 40.68 5.69
715 1197 2.828549 CACCAATGGTAGGGCGCC 60.829 66.667 21.18 21.18 32.11 6.53
716 1198 2.828549 CCACCAATGGTAGGGCGC 60.829 66.667 3.85 0.00 41.64 6.53
717 1199 2.124320 CCCACCAATGGTAGGGCG 60.124 66.667 21.28 3.74 45.66 6.13
718 1200 0.252057 AAACCCACCAATGGTAGGGC 60.252 55.000 28.26 0.00 45.66 5.19
719 1201 2.948600 GCTAAACCCACCAATGGTAGGG 60.949 54.545 27.32 27.32 45.66 3.53
720 1202 2.375146 GCTAAACCCACCAATGGTAGG 58.625 52.381 15.38 15.38 45.66 3.18
721 1203 2.014128 CGCTAAACCCACCAATGGTAG 58.986 52.381 3.85 1.88 45.66 3.18
722 1204 1.351683 ACGCTAAACCCACCAATGGTA 59.648 47.619 3.85 0.00 45.66 3.25
723 1205 0.111639 ACGCTAAACCCACCAATGGT 59.888 50.000 0.00 0.00 45.66 3.55
724 1206 0.525761 CACGCTAAACCCACCAATGG 59.474 55.000 0.00 0.00 46.81 3.16
725 1207 0.525761 CCACGCTAAACCCACCAATG 59.474 55.000 0.00 0.00 0.00 2.82
726 1208 1.248101 GCCACGCTAAACCCACCAAT 61.248 55.000 0.00 0.00 0.00 3.16
727 1209 1.899534 GCCACGCTAAACCCACCAA 60.900 57.895 0.00 0.00 0.00 3.67
728 1210 2.281900 GCCACGCTAAACCCACCA 60.282 61.111 0.00 0.00 0.00 4.17
790 1272 3.469863 AAAGCTTCACCCGGTCGCA 62.470 57.895 0.00 0.00 0.00 5.10
800 1282 0.467290 AGGGAAACGCCAAAGCTTCA 60.467 50.000 0.00 0.00 38.95 3.02
808 1290 4.582656 CCATTATCATTTAGGGAAACGCCA 59.417 41.667 0.00 0.00 38.95 5.69
847 1329 8.100164 GGTGGATTTTCTTTATGGAATGGAAAA 58.900 33.333 0.00 0.00 39.23 2.29
939 1431 0.537653 AGGCGAGAAACCTTAGGAGC 59.462 55.000 4.77 0.41 31.87 4.70
986 1478 1.302033 GCCATTGATCCGATCGCCT 60.302 57.895 10.32 0.00 0.00 5.52
1017 1509 1.674057 CTTCTTCTCCGGTGCCACT 59.326 57.895 0.00 0.00 0.00 4.00
1021 1513 1.016653 GTGAGCTTCTTCTCCGGTGC 61.017 60.000 0.00 0.00 32.22 5.01
1082 1574 2.171209 CTGTGACTCCATCGCCACCA 62.171 60.000 0.00 0.00 36.98 4.17
1102 1594 1.263484 CTCGATCATGTGCTTGATGGC 59.737 52.381 5.47 0.00 36.48 4.40
1117 1609 2.419198 GGCGCAGTCATCCTCGAT 59.581 61.111 10.83 0.00 0.00 3.59
1158 1650 3.711190 TGGCAAGGATCTCTGCTATTACA 59.289 43.478 15.92 5.77 0.00 2.41
1161 1653 3.498121 CCATGGCAAGGATCTCTGCTATT 60.498 47.826 1.66 3.05 0.00 1.73
1163 1655 1.419012 CCATGGCAAGGATCTCTGCTA 59.581 52.381 1.66 12.04 0.00 3.49
1167 1659 1.588239 TGACCATGGCAAGGATCTCT 58.412 50.000 16.88 0.00 0.00 3.10
1210 1702 1.807573 CTTCGGCTCCGTGCTTCTC 60.808 63.158 8.28 0.00 42.39 2.87
1261 1753 2.561419 CCTTGTCGAAGGTCTTGAGGTA 59.439 50.000 0.00 0.00 43.63 3.08
1352 1844 5.438833 AGTACTAACTAGAAGGAGCACGAT 58.561 41.667 0.00 0.00 32.84 3.73
1385 1880 5.372373 GCCTCTAAATAGCAGGAACAAGAT 58.628 41.667 8.99 0.00 0.00 2.40
1416 1911 9.703892 CCAATACTAACCATTCAAAATCACAAA 57.296 29.630 0.00 0.00 0.00 2.83
1597 2099 6.903534 TGATCCCAGTATAGGAAGAGAAAAGT 59.096 38.462 0.00 0.00 36.85 2.66
1617 2119 8.575589 TGCATGTATTTGGTGTATTAATGATCC 58.424 33.333 0.00 0.00 0.00 3.36
1629 2131 4.497300 CCTTTCCTTGCATGTATTTGGTG 58.503 43.478 0.00 0.00 0.00 4.17
1685 2187 9.184523 ACTAGCAACCTATTTAAAACATGCATA 57.815 29.630 0.00 0.00 35.11 3.14
1789 2295 5.937111 TCCCTCCATTTACTTATACAAGGC 58.063 41.667 0.00 0.00 35.97 4.35
1808 2314 3.345414 CAACGAGTCTACAGTACTCCCT 58.655 50.000 0.00 0.00 40.24 4.20
1853 2359 9.062674 CAGAATACCTACGACGAACATATAATG 57.937 37.037 0.00 0.00 0.00 1.90
1857 2363 5.009310 TGCAGAATACCTACGACGAACATAT 59.991 40.000 0.00 0.00 0.00 1.78
1867 2373 7.490962 TCCAATATTTTGCAGAATACCTACG 57.509 36.000 11.55 0.40 0.00 3.51
1869 2375 8.859090 CCATTCCAATATTTTGCAGAATACCTA 58.141 33.333 11.55 0.00 28.66 3.08
1968 2477 6.849085 TGTAAACATGATGGCAATTAACCT 57.151 33.333 0.00 0.00 0.00 3.50
1985 2494 2.747446 AGGATCGCACAACCATGTAAAC 59.253 45.455 0.00 0.00 37.82 2.01
2071 3960 9.942850 ATTTAGCAAATAAGGCAATACACTTTT 57.057 25.926 0.00 0.00 0.00 2.27
2113 4002 9.084164 AGTAGTACAACACTGAAAATATTAGCG 57.916 33.333 2.52 0.00 38.24 4.26
2125 4014 5.751509 TGCAACTTACAGTAGTACAACACTG 59.248 40.000 16.36 16.36 46.15 3.66
2187 4078 9.389755 TGCATTTAACTAAGCACAATACTGATA 57.610 29.630 0.00 0.00 31.05 2.15
2223 4116 4.468095 AACAGAAATCAGCAACGTGTAC 57.532 40.909 0.00 0.00 0.00 2.90
2229 4122 4.276926 ACTCAGGAAACAGAAATCAGCAAC 59.723 41.667 0.00 0.00 0.00 4.17
2326 4224 7.778853 AGATAGTTCAGATTTCCAGCAAATGAT 59.221 33.333 0.00 0.00 34.60 2.45
2329 4227 7.066766 GTCAGATAGTTCAGATTTCCAGCAAAT 59.933 37.037 0.00 0.00 37.41 2.32
2437 4335 3.030291 AGTCCAACAAGCCATCACAAAA 58.970 40.909 0.00 0.00 0.00 2.44
2453 4351 8.868522 AATAGAAATGACATCAAAGAAGTCCA 57.131 30.769 0.64 0.00 30.44 4.02
2487 4385 4.096532 AGCATTCTTGACTGATGATGCAAG 59.903 41.667 8.58 0.00 39.17 4.01
2585 4483 6.485313 CCGGAATAAAGATACCACAAAGCATA 59.515 38.462 0.00 0.00 0.00 3.14
2621 4519 7.708322 CACTAACAGTAGCATTCTCATATGTGT 59.292 37.037 1.90 0.00 0.00 3.72
2755 4655 7.354751 ACCCAAAACAACTATGTACAACAAT 57.645 32.000 0.00 0.00 39.40 2.71
2795 4695 5.758924 CCAATACAGTGCAGATGAATCATG 58.241 41.667 0.00 0.00 0.00 3.07
2796 4696 4.277672 GCCAATACAGTGCAGATGAATCAT 59.722 41.667 5.87 0.00 0.00 2.45
2798 4698 3.628942 TGCCAATACAGTGCAGATGAATC 59.371 43.478 5.87 0.00 0.00 2.52
2946 4847 6.634436 GCAAAATAGTAGCAATACAGCATGAC 59.366 38.462 0.00 0.00 39.69 3.06
3022 4924 2.157863 GGAGCAGAACTTCGCACTTAAC 59.842 50.000 7.88 0.00 0.00 2.01
3029 4931 1.016653 GTGAGGGAGCAGAACTTCGC 61.017 60.000 0.00 0.00 0.00 4.70
3070 4972 3.503748 AGACAGGAGCAACATAAACAAGC 59.496 43.478 0.00 0.00 0.00 4.01
3091 5116 9.482627 ACACAAAAGAGACTAAACAGATAAGAG 57.517 33.333 0.00 0.00 0.00 2.85
3164 5189 3.521937 CCCCTTGATGTCCAGGTAGTTTA 59.478 47.826 0.14 0.00 0.00 2.01
3212 5237 1.597742 CCCCTTTATCATGTCAGCGG 58.402 55.000 0.00 0.00 0.00 5.52
3254 5279 3.186613 GTCGTTCTTGATGTTGAAGGTCC 59.813 47.826 0.00 0.00 32.15 4.46
3304 5329 1.559682 GGCCCACTAGTTCTTCATCCA 59.440 52.381 0.00 0.00 0.00 3.41
3316 5341 2.859165 CTTCACTTGAAGGCCCACTA 57.141 50.000 10.65 0.00 45.79 2.74
3350 5376 9.282247 TCGATTACGAGATAGTTGTTTCTTTAC 57.718 33.333 0.00 0.00 43.81 2.01
3431 5458 6.325919 AGCATATTTTTGAACCAGAAACGA 57.674 33.333 0.00 0.00 0.00 3.85
3448 5475 9.770097 TGTACTTACGACTTACTACTAGCATAT 57.230 33.333 0.00 0.00 0.00 1.78
3478 5505 2.231529 CTAGATCGACTGGAACCGGAT 58.768 52.381 9.46 0.00 0.00 4.18
3481 5508 1.604755 CTCCTAGATCGACTGGAACCG 59.395 57.143 0.00 0.00 0.00 4.44
3497 5524 3.136626 GTGAGCCATATGGTAAACCTCCT 59.863 47.826 22.79 8.66 37.57 3.69
3523 5550 8.034804 GCAAAAGACCACCAACATAAAGATAAT 58.965 33.333 0.00 0.00 0.00 1.28
3575 5602 2.678324 ACCAACAACCAACAACAAACG 58.322 42.857 0.00 0.00 0.00 3.60
3581 5608 4.160439 TGCAGAATAACCAACAACCAACAA 59.840 37.500 0.00 0.00 0.00 2.83
3584 5611 5.344743 TTTGCAGAATAACCAACAACCAA 57.655 34.783 0.00 0.00 0.00 3.67
3637 5664 4.944619 AGAATCTCAACGCATCATAGGA 57.055 40.909 0.00 0.00 0.00 2.94
3663 5690 3.130869 ACTCAAACTTGAAGCACATGCAA 59.869 39.130 6.64 0.00 37.62 4.08
3745 5772 0.443869 CGAGATGCCAGGTTTGAACG 59.556 55.000 0.00 0.00 0.00 3.95
3752 5779 2.589610 TAGCTCCCGAGATGCCAGGT 62.590 60.000 0.00 0.00 0.00 4.00
3811 5838 2.554032 GCAAATTGCACTAGACACCACT 59.446 45.455 13.73 0.00 44.26 4.00
3892 5919 1.344226 GCACTTTTGCGGGCGATTTC 61.344 55.000 0.00 0.00 39.50 2.17
3910 5937 2.086054 AAAGTGAGTGTCCGATCTGC 57.914 50.000 0.00 0.00 0.00 4.26
3949 5976 2.814336 GACCAGTCCTGACCAATTTGAC 59.186 50.000 0.00 0.00 0.00 3.18
3966 5993 4.354387 TGTTAGTTTGGGGGATTTAGACCA 59.646 41.667 0.00 0.00 0.00 4.02
4004 6032 2.609459 GACATCTAGATGCCCACAAACG 59.391 50.000 28.86 5.36 42.39 3.60
4018 6046 4.097437 GGAGTCATGTGTTACGGACATCTA 59.903 45.833 0.00 0.00 41.10 1.98
4081 6109 6.825213 AGTTGCACTTTCAATAGCATATGAGA 59.175 34.615 6.97 0.00 36.80 3.27
4094 6122 3.844211 ACCTAGGGATAGTTGCACTTTCA 59.156 43.478 14.81 0.00 29.36 2.69
4095 6123 4.192317 CACCTAGGGATAGTTGCACTTTC 58.808 47.826 14.81 0.00 0.00 2.62
4096 6124 3.054361 CCACCTAGGGATAGTTGCACTTT 60.054 47.826 14.81 0.00 0.00 2.66
4097 6125 2.505819 CCACCTAGGGATAGTTGCACTT 59.494 50.000 14.81 0.00 0.00 3.16
4098 6126 2.119495 CCACCTAGGGATAGTTGCACT 58.881 52.381 14.81 0.00 0.00 4.40
4099 6127 1.838077 ACCACCTAGGGATAGTTGCAC 59.162 52.381 14.81 0.00 43.89 4.57
4100 6128 2.263895 ACCACCTAGGGATAGTTGCA 57.736 50.000 14.81 0.00 43.89 4.08
4101 6129 3.646736 AAACCACCTAGGGATAGTTGC 57.353 47.619 14.81 0.00 43.89 4.17
4102 6130 4.263771 ACCAAAACCACCTAGGGATAGTTG 60.264 45.833 14.81 11.15 43.89 3.16
4103 6131 3.920841 ACCAAAACCACCTAGGGATAGTT 59.079 43.478 14.81 7.87 43.89 2.24
4104 6132 3.538387 ACCAAAACCACCTAGGGATAGT 58.462 45.455 14.81 1.38 43.89 2.12
4105 6133 5.703730 TTACCAAAACCACCTAGGGATAG 57.296 43.478 14.81 0.69 43.89 2.08
4106 6134 6.354126 GGAATTACCAAAACCACCTAGGGATA 60.354 42.308 14.81 0.00 39.31 2.59
4107 6135 5.516044 GAATTACCAAAACCACCTAGGGAT 58.484 41.667 14.81 0.00 43.89 3.85
4108 6136 4.264038 GGAATTACCAAAACCACCTAGGGA 60.264 45.833 14.81 0.00 39.31 4.20
4109 6137 4.021229 GGAATTACCAAAACCACCTAGGG 58.979 47.826 14.81 1.73 39.31 3.53
4110 6138 4.930696 AGGAATTACCAAAACCACCTAGG 58.069 43.478 7.41 7.41 42.06 3.02
4111 6139 6.943718 TGTTAGGAATTACCAAAACCACCTAG 59.056 38.462 0.00 0.00 42.04 3.02
4112 6140 6.850234 TGTTAGGAATTACCAAAACCACCTA 58.150 36.000 0.00 0.00 42.04 3.08
4113 6141 5.707495 TGTTAGGAATTACCAAAACCACCT 58.293 37.500 0.00 0.00 42.04 4.00
4114 6142 6.183360 TGTTGTTAGGAATTACCAAAACCACC 60.183 38.462 0.00 0.00 42.04 4.61
4115 6143 6.807789 TGTTGTTAGGAATTACCAAAACCAC 58.192 36.000 0.00 0.00 42.04 4.16
4116 6144 7.604657 ATGTTGTTAGGAATTACCAAAACCA 57.395 32.000 0.00 0.00 42.04 3.67
4120 6148 9.914834 AGCTATATGTTGTTAGGAATTACCAAA 57.085 29.630 0.00 0.00 42.04 3.28
4121 6149 9.555727 GAGCTATATGTTGTTAGGAATTACCAA 57.444 33.333 0.00 0.00 42.04 3.67
4122 6150 8.710239 TGAGCTATATGTTGTTAGGAATTACCA 58.290 33.333 0.00 0.00 42.04 3.25
4123 6151 9.726438 ATGAGCTATATGTTGTTAGGAATTACC 57.274 33.333 0.00 0.00 39.35 2.85
4126 6154 9.851686 TCAATGAGCTATATGTTGTTAGGAATT 57.148 29.630 0.00 0.00 0.00 2.17
4127 6155 9.499479 CTCAATGAGCTATATGTTGTTAGGAAT 57.501 33.333 0.00 0.00 0.00 3.01
4128 6156 8.893219 CTCAATGAGCTATATGTTGTTAGGAA 57.107 34.615 0.00 0.00 0.00 3.36
4145 6173 8.341173 GTCTTGGAAATATGTTAGCTCAATGAG 58.659 37.037 5.78 5.78 0.00 2.90
4146 6174 7.828717 TGTCTTGGAAATATGTTAGCTCAATGA 59.171 33.333 0.00 0.00 0.00 2.57
4147 6175 7.988737 TGTCTTGGAAATATGTTAGCTCAATG 58.011 34.615 0.00 0.00 0.00 2.82
4148 6176 8.579850 TTGTCTTGGAAATATGTTAGCTCAAT 57.420 30.769 0.00 0.00 0.00 2.57
4149 6177 7.994425 TTGTCTTGGAAATATGTTAGCTCAA 57.006 32.000 0.00 0.00 0.00 3.02
4150 6178 7.665559 AGTTTGTCTTGGAAATATGTTAGCTCA 59.334 33.333 0.00 0.00 0.00 4.26
4151 6179 8.045176 AGTTTGTCTTGGAAATATGTTAGCTC 57.955 34.615 0.00 0.00 0.00 4.09
4152 6180 8.409358 AAGTTTGTCTTGGAAATATGTTAGCT 57.591 30.769 0.00 0.00 34.77 3.32
4153 6181 9.476202 AAAAGTTTGTCTTGGAAATATGTTAGC 57.524 29.630 0.00 0.00 36.40 3.09
4156 6184 9.533253 CTGAAAAGTTTGTCTTGGAAATATGTT 57.467 29.630 0.00 0.00 36.40 2.71
4157 6185 8.143835 CCTGAAAAGTTTGTCTTGGAAATATGT 58.856 33.333 0.00 0.00 36.40 2.29
4158 6186 8.359642 TCCTGAAAAGTTTGTCTTGGAAATATG 58.640 33.333 0.00 0.00 36.40 1.78
4159 6187 8.477419 TCCTGAAAAGTTTGTCTTGGAAATAT 57.523 30.769 0.00 0.00 36.40 1.28
4160 6188 7.889873 TCCTGAAAAGTTTGTCTTGGAAATA 57.110 32.000 0.00 0.00 36.40 1.40
4161 6189 6.790232 TCCTGAAAAGTTTGTCTTGGAAAT 57.210 33.333 0.00 0.00 36.40 2.17
4162 6190 6.597832 TTCCTGAAAAGTTTGTCTTGGAAA 57.402 33.333 14.81 0.00 34.06 3.13
4163 6191 6.597832 TTTCCTGAAAAGTTTGTCTTGGAA 57.402 33.333 14.04 14.04 34.70 3.53
4164 6192 6.597832 TTTTCCTGAAAAGTTTGTCTTGGA 57.402 33.333 1.04 0.43 35.57 3.53
4176 6204 6.225318 CCATTCATTGAGCTTTTCCTGAAAA 58.775 36.000 5.07 5.07 37.90 2.29
4177 6205 5.786311 CCATTCATTGAGCTTTTCCTGAAA 58.214 37.500 0.00 0.00 33.11 2.69
4178 6206 4.322198 GCCATTCATTGAGCTTTTCCTGAA 60.322 41.667 0.00 0.00 33.58 3.02
4179 6207 3.194116 GCCATTCATTGAGCTTTTCCTGA 59.806 43.478 0.00 0.00 0.00 3.86
4180 6208 3.056393 TGCCATTCATTGAGCTTTTCCTG 60.056 43.478 0.00 0.00 0.00 3.86
4181 6209 3.167485 TGCCATTCATTGAGCTTTTCCT 58.833 40.909 0.00 0.00 0.00 3.36
4182 6210 3.598019 TGCCATTCATTGAGCTTTTCC 57.402 42.857 0.00 0.00 0.00 3.13
4183 6211 3.869246 CCATGCCATTCATTGAGCTTTTC 59.131 43.478 0.00 0.00 31.79 2.29
4184 6212 3.869065 CCATGCCATTCATTGAGCTTTT 58.131 40.909 0.00 0.00 31.79 2.27
4185 6213 2.419574 GCCATGCCATTCATTGAGCTTT 60.420 45.455 0.00 0.00 31.79 3.51
4186 6214 1.138266 GCCATGCCATTCATTGAGCTT 59.862 47.619 0.00 0.00 31.79 3.74
4187 6215 0.750850 GCCATGCCATTCATTGAGCT 59.249 50.000 0.00 0.00 31.79 4.09
4188 6216 0.462375 TGCCATGCCATTCATTGAGC 59.538 50.000 0.00 0.00 31.79 4.26
4189 6217 2.547855 CCATGCCATGCCATTCATTGAG 60.548 50.000 0.00 0.00 31.79 3.02
4190 6218 1.414550 CCATGCCATGCCATTCATTGA 59.585 47.619 0.00 0.00 31.79 2.57
4191 6219 1.414550 TCCATGCCATGCCATTCATTG 59.585 47.619 0.00 0.00 31.79 2.82
4192 6220 1.796017 TCCATGCCATGCCATTCATT 58.204 45.000 0.00 0.00 31.79 2.57
4193 6221 1.623311 CATCCATGCCATGCCATTCAT 59.377 47.619 0.00 0.00 35.31 2.57
4194 6222 1.044611 CATCCATGCCATGCCATTCA 58.955 50.000 0.00 0.00 0.00 2.57
4195 6223 1.272490 CTCATCCATGCCATGCCATTC 59.728 52.381 0.00 0.00 0.00 2.67
4196 6224 1.338107 CTCATCCATGCCATGCCATT 58.662 50.000 0.00 0.00 0.00 3.16
4197 6225 0.541998 CCTCATCCATGCCATGCCAT 60.542 55.000 0.00 0.00 0.00 4.40
4198 6226 1.152631 CCTCATCCATGCCATGCCA 60.153 57.895 0.00 0.00 0.00 4.92
4199 6227 0.468585 TTCCTCATCCATGCCATGCC 60.469 55.000 0.00 0.00 0.00 4.40
4200 6228 1.340248 CTTTCCTCATCCATGCCATGC 59.660 52.381 0.00 0.00 0.00 4.06
4201 6229 2.361119 CACTTTCCTCATCCATGCCATG 59.639 50.000 0.00 0.00 0.00 3.66
4202 6230 2.662866 CACTTTCCTCATCCATGCCAT 58.337 47.619 0.00 0.00 0.00 4.40
4203 6231 1.341285 CCACTTTCCTCATCCATGCCA 60.341 52.381 0.00 0.00 0.00 4.92
4204 6232 1.064463 TCCACTTTCCTCATCCATGCC 60.064 52.381 0.00 0.00 0.00 4.40
4205 6233 2.425143 TCCACTTTCCTCATCCATGC 57.575 50.000 0.00 0.00 0.00 4.06
4206 6234 3.484407 GGATCCACTTTCCTCATCCATG 58.516 50.000 6.95 0.00 34.27 3.66
4207 6235 2.444766 GGGATCCACTTTCCTCATCCAT 59.555 50.000 15.23 0.00 35.60 3.41
4208 6236 1.846439 GGGATCCACTTTCCTCATCCA 59.154 52.381 15.23 0.00 35.60 3.41
4209 6237 2.105649 GAGGGATCCACTTTCCTCATCC 59.894 54.545 15.23 0.00 43.78 3.51
4210 6238 3.483808 GAGGGATCCACTTTCCTCATC 57.516 52.381 15.23 0.00 43.78 2.92
4213 6241 3.721087 TTTGAGGGATCCACTTTCCTC 57.279 47.619 15.23 10.12 44.39 3.71
4214 6242 4.682021 ATTTTGAGGGATCCACTTTCCT 57.318 40.909 15.23 0.00 33.53 3.36
4215 6243 5.510430 AGTATTTTGAGGGATCCACTTTCC 58.490 41.667 15.23 0.00 0.00 3.13
4216 6244 7.283354 CCTTAGTATTTTGAGGGATCCACTTTC 59.717 40.741 15.23 6.00 0.00 2.62
4217 6245 7.036863 TCCTTAGTATTTTGAGGGATCCACTTT 60.037 37.037 15.23 0.00 0.00 2.66
4218 6246 6.447084 TCCTTAGTATTTTGAGGGATCCACTT 59.553 38.462 15.23 0.00 0.00 3.16
4219 6247 5.970640 TCCTTAGTATTTTGAGGGATCCACT 59.029 40.000 15.23 8.33 0.00 4.00
4220 6248 6.248569 TCCTTAGTATTTTGAGGGATCCAC 57.751 41.667 15.23 7.66 0.00 4.02
4221 6249 8.575736 TTATCCTTAGTATTTTGAGGGATCCA 57.424 34.615 15.23 0.00 34.48 3.41
4222 6250 9.862149 TTTTATCCTTAGTATTTTGAGGGATCC 57.138 33.333 1.92 1.92 34.48 3.36
4224 6252 9.868160 CCTTTTATCCTTAGTATTTTGAGGGAT 57.132 33.333 0.00 0.00 36.31 3.85
4225 6253 9.064602 TCCTTTTATCCTTAGTATTTTGAGGGA 57.935 33.333 0.00 0.00 0.00 4.20
4226 6254 9.868160 ATCCTTTTATCCTTAGTATTTTGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
4230 6258 9.750125 GCCAATCCTTTTATCCTTAGTATTTTG 57.250 33.333 0.00 0.00 0.00 2.44
4231 6259 9.715119 AGCCAATCCTTTTATCCTTAGTATTTT 57.285 29.630 0.00 0.00 0.00 1.82
4232 6260 9.355916 GAGCCAATCCTTTTATCCTTAGTATTT 57.644 33.333 0.00 0.00 0.00 1.40
4233 6261 8.502738 TGAGCCAATCCTTTTATCCTTAGTATT 58.497 33.333 0.00 0.00 0.00 1.89
4234 6262 8.045720 TGAGCCAATCCTTTTATCCTTAGTAT 57.954 34.615 0.00 0.00 0.00 2.12
4235 6263 7.446106 TGAGCCAATCCTTTTATCCTTAGTA 57.554 36.000 0.00 0.00 0.00 1.82
4236 6264 6.327386 TGAGCCAATCCTTTTATCCTTAGT 57.673 37.500 0.00 0.00 0.00 2.24
4237 6265 6.238869 GCTTGAGCCAATCCTTTTATCCTTAG 60.239 42.308 0.00 0.00 34.31 2.18
4238 6266 5.594317 GCTTGAGCCAATCCTTTTATCCTTA 59.406 40.000 0.00 0.00 34.31 2.69
4239 6267 4.403752 GCTTGAGCCAATCCTTTTATCCTT 59.596 41.667 0.00 0.00 34.31 3.36
4240 6268 3.956848 GCTTGAGCCAATCCTTTTATCCT 59.043 43.478 0.00 0.00 34.31 3.24
4241 6269 3.956848 AGCTTGAGCCAATCCTTTTATCC 59.043 43.478 0.00 0.00 43.38 2.59
4242 6270 4.641989 TGAGCTTGAGCCAATCCTTTTATC 59.358 41.667 0.00 0.00 43.38 1.75
4243 6271 4.603131 TGAGCTTGAGCCAATCCTTTTAT 58.397 39.130 0.00 0.00 43.38 1.40
4244 6272 4.032960 TGAGCTTGAGCCAATCCTTTTA 57.967 40.909 0.00 0.00 43.38 1.52
4245 6273 2.880443 TGAGCTTGAGCCAATCCTTTT 58.120 42.857 0.00 0.00 43.38 2.27
4246 6274 2.592102 TGAGCTTGAGCCAATCCTTT 57.408 45.000 0.00 0.00 43.38 3.11
4247 6275 2.592102 TTGAGCTTGAGCCAATCCTT 57.408 45.000 0.00 0.00 43.38 3.36
4248 6276 2.592102 TTTGAGCTTGAGCCAATCCT 57.408 45.000 0.00 0.00 43.38 3.24
4249 6277 2.673326 GCTTTTGAGCTTGAGCCAATCC 60.673 50.000 0.00 0.00 43.38 3.01
4250 6278 2.230750 AGCTTTTGAGCTTGAGCCAATC 59.769 45.455 0.00 0.00 43.52 2.67
4251 6279 2.230750 GAGCTTTTGAGCTTGAGCCAAT 59.769 45.455 2.06 0.00 46.36 3.16
4252 6280 1.610522 GAGCTTTTGAGCTTGAGCCAA 59.389 47.619 2.06 1.54 46.36 4.52
4253 6281 1.242076 GAGCTTTTGAGCTTGAGCCA 58.758 50.000 2.06 0.00 46.36 4.75
4254 6282 1.242076 TGAGCTTTTGAGCTTGAGCC 58.758 50.000 2.06 0.00 46.36 4.70
4255 6283 2.551459 TCTTGAGCTTTTGAGCTTGAGC 59.449 45.455 2.06 0.00 46.36 4.26
4256 6284 3.814283 AGTCTTGAGCTTTTGAGCTTGAG 59.186 43.478 2.06 4.43 46.36 3.02
4257 6285 3.812053 GAGTCTTGAGCTTTTGAGCTTGA 59.188 43.478 2.06 0.05 46.36 3.02
4258 6286 3.814283 AGAGTCTTGAGCTTTTGAGCTTG 59.186 43.478 2.06 0.00 46.36 4.01
4259 6287 4.084011 AGAGTCTTGAGCTTTTGAGCTT 57.916 40.909 2.06 0.00 46.36 3.74
4261 6289 4.310769 TGTAGAGTCTTGAGCTTTTGAGC 58.689 43.478 0.00 0.00 0.00 4.26
4262 6290 7.432350 AAATGTAGAGTCTTGAGCTTTTGAG 57.568 36.000 0.00 0.00 0.00 3.02
4263 6291 7.807977 AAAATGTAGAGTCTTGAGCTTTTGA 57.192 32.000 0.00 0.00 0.00 2.69
4264 6292 8.559536 TGTAAAATGTAGAGTCTTGAGCTTTTG 58.440 33.333 0.00 0.00 0.00 2.44
4265 6293 8.677148 TGTAAAATGTAGAGTCTTGAGCTTTT 57.323 30.769 0.00 1.59 0.00 2.27
4266 6294 8.854614 ATGTAAAATGTAGAGTCTTGAGCTTT 57.145 30.769 0.00 0.00 0.00 3.51
4267 6295 8.854614 AATGTAAAATGTAGAGTCTTGAGCTT 57.145 30.769 0.00 0.00 0.00 3.74
4268 6296 8.854614 AAATGTAAAATGTAGAGTCTTGAGCT 57.145 30.769 0.00 0.00 0.00 4.09
4285 6313 9.513906 TGTGATCTTGGATCACTAAAATGTAAA 57.486 29.630 28.84 11.63 46.25 2.01
4286 6314 9.685276 ATGTGATCTTGGATCACTAAAATGTAA 57.315 29.630 28.84 14.21 46.25 2.41
4287 6315 9.685276 AATGTGATCTTGGATCACTAAAATGTA 57.315 29.630 28.84 14.73 46.25 2.29
4288 6316 8.464404 CAATGTGATCTTGGATCACTAAAATGT 58.536 33.333 28.84 12.26 46.25 2.71
4289 6317 8.680001 TCAATGTGATCTTGGATCACTAAAATG 58.320 33.333 28.84 21.65 46.25 2.32
4290 6318 8.812513 TCAATGTGATCTTGGATCACTAAAAT 57.187 30.769 28.84 17.65 46.25 1.82
4291 6319 7.884877 ACTCAATGTGATCTTGGATCACTAAAA 59.115 33.333 28.84 16.57 46.25 1.52
4292 6320 7.397221 ACTCAATGTGATCTTGGATCACTAAA 58.603 34.615 28.84 16.83 46.25 1.85
4293 6321 6.950842 ACTCAATGTGATCTTGGATCACTAA 58.049 36.000 28.84 17.35 46.25 2.24
4294 6322 6.550938 ACTCAATGTGATCTTGGATCACTA 57.449 37.500 28.84 20.13 46.25 2.74
4295 6323 5.426504 GACTCAATGTGATCTTGGATCACT 58.573 41.667 28.84 17.82 46.25 3.41
4296 6324 5.731599 GACTCAATGTGATCTTGGATCAC 57.268 43.478 24.99 24.99 46.28 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.