Multiple sequence alignment - TraesCS5B01G331500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G331500 chr5B 100.000 2550 0 0 1 2550 515586038 515588587 0.000000e+00 4710.0
1 TraesCS5B01G331500 chr5B 100.000 641 0 0 2830 3470 515588867 515589507 0.000000e+00 1184.0
2 TraesCS5B01G331500 chr5B 91.736 121 10 0 1099 1219 684448960 684448840 5.960000e-38 169.0
3 TraesCS5B01G331500 chr5B 92.035 113 8 1 3315 3427 498251274 498251163 1.290000e-34 158.0
4 TraesCS5B01G331500 chr5D 94.628 968 47 4 1585 2550 426015690 426016654 0.000000e+00 1495.0
5 TraesCS5B01G331500 chr5D 94.609 946 31 6 570 1495 426014520 426015465 0.000000e+00 1447.0
6 TraesCS5B01G331500 chr5D 91.146 960 72 10 1596 2550 426036555 426037506 0.000000e+00 1290.0
7 TraesCS5B01G331500 chr5D 92.323 495 22 4 2830 3308 426037531 426038025 0.000000e+00 689.0
8 TraesCS5B01G331500 chr5D 90.726 496 35 2 2830 3314 426016679 426017174 0.000000e+00 651.0
9 TraesCS5B01G331500 chr5D 89.530 468 17 9 1005 1450 426035871 426036328 6.500000e-157 564.0
10 TraesCS5B01G331500 chr5D 86.829 205 14 5 1 195 426014138 426014339 2.100000e-52 217.0
11 TraesCS5B01G331500 chr5D 87.755 147 9 5 3314 3460 404380647 404380510 2.770000e-36 163.0
12 TraesCS5B01G331500 chr5A 91.400 1000 63 13 1558 2550 540320777 540321760 0.000000e+00 1349.0
13 TraesCS5B01G331500 chr5A 86.008 729 62 19 797 1495 540319910 540320628 0.000000e+00 745.0
14 TraesCS5B01G331500 chr5A 87.525 497 50 5 2830 3314 540321773 540322269 6.500000e-157 564.0
15 TraesCS5B01G331500 chrUn 81.024 332 47 9 243 569 333410970 333411290 2.070000e-62 250.0
16 TraesCS5B01G331500 chrUn 81.024 332 47 9 243 569 373700818 373700498 2.070000e-62 250.0
17 TraesCS5B01G331500 chrUn 81.024 332 47 9 243 569 373702684 373702364 2.070000e-62 250.0
18 TraesCS5B01G331500 chr2B 81.024 332 47 9 243 569 530793852 530794172 2.070000e-62 250.0
19 TraesCS5B01G331500 chr2B 81.024 332 47 9 243 569 530839745 530840065 2.070000e-62 250.0
20 TraesCS5B01G331500 chr2B 94.355 124 7 0 1096 1219 406098849 406098972 1.270000e-44 191.0
21 TraesCS5B01G331500 chr2B 82.464 211 20 9 1026 1219 508215113 508214903 5.960000e-38 169.0
22 TraesCS5B01G331500 chr2B 82.143 84 11 4 1889 1970 507911660 507911579 6.210000e-08 69.4
23 TraesCS5B01G331500 chr2B 85.965 57 6 2 1889 1945 508214147 508214093 3.740000e-05 60.2
24 TraesCS5B01G331500 chr6D 77.570 428 54 28 1033 1422 91842651 91843074 1.620000e-53 220.0
25 TraesCS5B01G331500 chr2A 95.041 121 6 0 1099 1219 451013541 451013421 1.270000e-44 191.0
26 TraesCS5B01G331500 chr2A 83.568 213 16 11 1026 1219 555883349 555883561 7.650000e-42 182.0
27 TraesCS5B01G331500 chr2A 83.099 213 17 11 1026 1219 555887445 555887657 3.560000e-40 176.0
28 TraesCS5B01G331500 chr2A 90.323 124 11 1 1097 1219 450997116 450996993 9.970000e-36 161.0
29 TraesCS5B01G331500 chr2D 93.548 124 7 1 1097 1219 340510972 340511095 2.130000e-42 183.0
30 TraesCS5B01G331500 chr2D 83.568 213 16 11 1026 1219 430434162 430433950 7.650000e-42 182.0
31 TraesCS5B01G331500 chr2D 83.568 213 16 11 1026 1219 430441955 430441743 7.650000e-42 182.0
32 TraesCS5B01G331500 chr2D 91.129 124 11 0 1096 1219 340270466 340270589 5.960000e-38 169.0
33 TraesCS5B01G331500 chr2D 79.245 106 18 3 1894 1997 430021983 430021880 1.730000e-08 71.3
34 TraesCS5B01G331500 chr3D 87.671 146 9 5 3315 3460 446093590 446093726 9.970000e-36 161.0
35 TraesCS5B01G331500 chr3D 90.351 114 10 1 3315 3428 552623559 552623671 7.760000e-32 148.0
36 TraesCS5B01G331500 chr7B 92.035 113 8 1 3315 3427 522081807 522081696 1.290000e-34 158.0
37 TraesCS5B01G331500 chr7B 91.150 113 9 1 3315 3427 546547264 546547153 6.000000e-33 152.0
38 TraesCS5B01G331500 chr6A 92.035 113 8 1 3315 3427 382844091 382843980 1.290000e-34 158.0
39 TraesCS5B01G331500 chr1B 91.150 113 9 1 3315 3427 449248792 449248903 6.000000e-33 152.0
40 TraesCS5B01G331500 chr7A 90.351 114 9 2 3314 3427 693407739 693407628 7.760000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G331500 chr5B 515586038 515589507 3469 False 2947.000000 4710 100.000000 1 3470 2 chr5B.!!$F1 3469
1 TraesCS5B01G331500 chr5D 426014138 426017174 3036 False 952.500000 1495 91.698000 1 3314 4 chr5D.!!$F1 3313
2 TraesCS5B01G331500 chr5D 426035871 426038025 2154 False 847.666667 1290 90.999667 1005 3308 3 chr5D.!!$F2 2303
3 TraesCS5B01G331500 chr5A 540319910 540322269 2359 False 886.000000 1349 88.311000 797 3314 3 chr5A.!!$F1 2517
4 TraesCS5B01G331500 chrUn 373700498 373702684 2186 True 250.000000 250 81.024000 243 569 2 chrUn.!!$R1 326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 368 0.106967 GGAGAAGATGGGGAAGGTGC 60.107 60.0 0.00 0.0 0.00 5.01 F
517 562 0.165944 CAGTCGGGCACGCTAAAAAG 59.834 55.0 1.67 0.0 40.69 2.27 F
1528 1822 0.110104 CGTATACTCCCTCCCTCCGT 59.890 60.0 0.56 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1803 0.110104 ACGGAGGGAGGGAGTATACG 59.890 60.0 0.00 0.0 0.00 3.06 R
2345 4043 0.105964 AAGCTCGGCCATCTCCTCTA 60.106 55.0 2.24 0.0 0.00 2.43 R
3390 5125 0.261696 ACAGGGAGTGTTTTGGGCTT 59.738 50.0 0.00 0.0 34.94 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.284331 TAGACCCAGCCTCGGCAA 60.284 61.111 11.02 0.00 44.88 4.52
38 39 3.615496 GCAATTCAGCATGTAAAAGGCAG 59.385 43.478 0.00 0.00 38.31 4.85
76 77 8.519492 TTTTTACTGCTAGAATCAAAATGCAC 57.481 30.769 0.00 0.00 0.00 4.57
89 90 0.689080 AATGCACCCCCACAACAACA 60.689 50.000 0.00 0.00 0.00 3.33
122 123 5.070001 TGCCCAGTGTATTATAGCAAATCC 58.930 41.667 0.00 0.00 0.00 3.01
129 130 9.687210 CAGTGTATTATAGCAAATCCGTACTAA 57.313 33.333 0.00 0.00 0.00 2.24
148 159 7.009631 CGTACTAATGATGACTTGGAGAAACAG 59.990 40.741 0.00 0.00 0.00 3.16
154 165 4.753516 TGACTTGGAGAAACAGAAGACA 57.246 40.909 0.00 0.00 0.00 3.41
168 179 2.880890 AGAAGACATTGCAGAAACGCTT 59.119 40.909 0.00 0.00 0.00 4.68
171 216 4.410492 AGACATTGCAGAAACGCTTTAG 57.590 40.909 0.00 0.00 0.00 1.85
176 221 5.468746 ACATTGCAGAAACGCTTTAGACTTA 59.531 36.000 0.00 0.00 0.00 2.24
179 224 3.432252 GCAGAAACGCTTTAGACTTAGCA 59.568 43.478 9.20 0.00 37.23 3.49
189 234 6.521133 CGCTTTAGACTTAGCAACATCTTTTG 59.479 38.462 9.20 0.00 37.23 2.44
196 241 9.890629 AGACTTAGCAACATCTTTTGTGATATA 57.109 29.630 0.00 0.00 38.99 0.86
197 242 9.922305 GACTTAGCAACATCTTTTGTGATATAC 57.078 33.333 0.00 0.00 38.99 1.47
201 246 7.341805 AGCAACATCTTTTGTGATATACTCCT 58.658 34.615 0.00 0.00 38.99 3.69
203 248 8.125448 GCAACATCTTTTGTGATATACTCCTTC 58.875 37.037 0.00 0.00 38.99 3.46
205 250 6.986817 ACATCTTTTGTGATATACTCCTTCCG 59.013 38.462 0.00 0.00 37.11 4.30
207 252 7.649533 TCTTTTGTGATATACTCCTTCCGTA 57.350 36.000 0.00 0.00 0.00 4.02
208 253 7.486647 TCTTTTGTGATATACTCCTTCCGTAC 58.513 38.462 0.00 0.00 0.00 3.67
209 254 7.341256 TCTTTTGTGATATACTCCTTCCGTACT 59.659 37.037 0.00 0.00 0.00 2.73
210 255 8.523915 TTTTGTGATATACTCCTTCCGTACTA 57.476 34.615 0.00 0.00 0.00 1.82
211 256 8.523915 TTTGTGATATACTCCTTCCGTACTAA 57.476 34.615 0.00 0.00 0.00 2.24
212 257 8.701908 TTGTGATATACTCCTTCCGTACTAAT 57.298 34.615 0.00 0.00 0.00 1.73
214 259 9.139734 TGTGATATACTCCTTCCGTACTAATTT 57.860 33.333 0.00 0.00 0.00 1.82
217 262 9.786105 GATATACTCCTTCCGTACTAATTTAGC 57.214 37.037 3.28 0.00 0.00 3.09
219 264 4.961099 ACTCCTTCCGTACTAATTTAGCCT 59.039 41.667 3.28 0.00 0.00 4.58
220 265 6.131961 ACTCCTTCCGTACTAATTTAGCCTA 58.868 40.000 3.28 0.00 0.00 3.93
222 267 7.124750 ACTCCTTCCGTACTAATTTAGCCTAAA 59.875 37.037 0.00 0.00 0.00 1.85
223 268 7.850193 TCCTTCCGTACTAATTTAGCCTAAAA 58.150 34.615 0.21 0.00 0.00 1.52
247 292 8.596271 AAAACGTTTTATATTTTGGTGGGAAG 57.404 30.769 24.13 0.00 0.00 3.46
248 293 7.527568 AACGTTTTATATTTTGGTGGGAAGA 57.472 32.000 0.00 0.00 0.00 2.87
249 294 7.153217 ACGTTTTATATTTTGGTGGGAAGAG 57.847 36.000 0.00 0.00 0.00 2.85
252 297 3.688049 ATATTTTGGTGGGAAGAGGGG 57.312 47.619 0.00 0.00 0.00 4.79
253 298 0.413434 ATTTTGGTGGGAAGAGGGGG 59.587 55.000 0.00 0.00 0.00 5.40
254 299 0.703056 TTTTGGTGGGAAGAGGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
256 301 1.140134 TTGGTGGGAAGAGGGGGAAG 61.140 60.000 0.00 0.00 0.00 3.46
257 302 1.541620 GGTGGGAAGAGGGGGAAGT 60.542 63.158 0.00 0.00 0.00 3.01
258 303 1.685820 GTGGGAAGAGGGGGAAGTG 59.314 63.158 0.00 0.00 0.00 3.16
259 304 1.541368 TGGGAAGAGGGGGAAGTGG 60.541 63.158 0.00 0.00 0.00 4.00
261 306 2.269241 GAAGAGGGGGAAGTGGCG 59.731 66.667 0.00 0.00 0.00 5.69
262 307 3.978571 GAAGAGGGGGAAGTGGCGC 62.979 68.421 0.00 0.00 0.00 6.53
284 329 3.480133 GGTGGGGATCGGTGGGAG 61.480 72.222 0.00 0.00 0.00 4.30
285 330 3.480133 GTGGGGATCGGTGGGAGG 61.480 72.222 0.00 0.00 0.00 4.30
287 332 2.366435 GGGGATCGGTGGGAGGAA 60.366 66.667 0.00 0.00 0.00 3.36
289 334 2.506472 GGATCGGTGGGAGGAAGC 59.494 66.667 0.00 0.00 0.00 3.86
290 335 2.107141 GATCGGTGGGAGGAAGCG 59.893 66.667 0.00 0.00 39.78 4.68
291 336 4.162690 ATCGGTGGGAGGAAGCGC 62.163 66.667 0.00 0.00 38.37 5.92
310 355 4.493747 GACGGGTCGCCGGAGAAG 62.494 72.222 10.32 7.25 37.53 2.85
312 357 3.528370 CGGGTCGCCGGAGAAGAT 61.528 66.667 10.32 0.00 0.00 2.40
314 359 2.107141 GGTCGCCGGAGAAGATGG 59.893 66.667 10.32 0.00 0.00 3.51
316 361 3.154473 TCGCCGGAGAAGATGGGG 61.154 66.667 5.05 0.00 37.08 4.96
317 362 3.154473 CGCCGGAGAAGATGGGGA 61.154 66.667 5.05 0.00 37.89 4.81
318 363 2.731571 CGCCGGAGAAGATGGGGAA 61.732 63.158 5.05 0.00 37.89 3.97
319 364 1.147153 GCCGGAGAAGATGGGGAAG 59.853 63.158 5.05 0.00 0.00 3.46
321 366 0.983378 CCGGAGAAGATGGGGAAGGT 60.983 60.000 0.00 0.00 0.00 3.50
322 367 0.179000 CGGAGAAGATGGGGAAGGTG 59.821 60.000 0.00 0.00 0.00 4.00
323 368 0.106967 GGAGAAGATGGGGAAGGTGC 60.107 60.000 0.00 0.00 0.00 5.01
325 370 2.044946 AAGATGGGGAAGGTGCGC 60.045 61.111 0.00 0.00 0.00 6.09
326 371 3.976701 AAGATGGGGAAGGTGCGCG 62.977 63.158 0.00 0.00 0.00 6.86
341 386 3.319904 GCGCGCGAGTGGATATTT 58.680 55.556 37.18 0.00 43.14 1.40
342 387 1.201825 GCGCGCGAGTGGATATTTC 59.798 57.895 37.18 6.98 43.14 2.17
343 388 1.487452 GCGCGCGAGTGGATATTTCA 61.487 55.000 37.18 0.00 43.14 2.69
344 389 0.504384 CGCGCGAGTGGATATTTCAG 59.496 55.000 28.94 0.00 38.12 3.02
345 390 1.852942 GCGCGAGTGGATATTTCAGA 58.147 50.000 12.10 0.00 0.00 3.27
346 391 2.408050 GCGCGAGTGGATATTTCAGAT 58.592 47.619 12.10 0.00 0.00 2.90
347 392 2.410053 GCGCGAGTGGATATTTCAGATC 59.590 50.000 12.10 0.00 0.00 2.75
348 393 2.989840 CGCGAGTGGATATTTCAGATCC 59.010 50.000 0.00 0.00 42.90 3.36
349 394 2.989840 GCGAGTGGATATTTCAGATCCG 59.010 50.000 0.00 0.00 45.15 4.18
350 395 3.305403 GCGAGTGGATATTTCAGATCCGA 60.305 47.826 0.00 0.00 45.15 4.55
351 396 4.230657 CGAGTGGATATTTCAGATCCGAC 58.769 47.826 0.00 0.00 45.15 4.79
352 397 4.230657 GAGTGGATATTTCAGATCCGACG 58.769 47.826 0.00 0.00 45.15 5.12
353 398 3.005897 AGTGGATATTTCAGATCCGACGG 59.994 47.826 7.84 7.84 45.15 4.79
354 399 2.963101 TGGATATTTCAGATCCGACGGT 59.037 45.455 14.79 0.67 45.15 4.83
355 400 3.386726 TGGATATTTCAGATCCGACGGTT 59.613 43.478 14.79 5.25 45.15 4.44
356 401 4.585581 TGGATATTTCAGATCCGACGGTTA 59.414 41.667 14.79 0.00 45.15 2.85
357 402 5.162075 GGATATTTCAGATCCGACGGTTAG 58.838 45.833 14.79 2.26 33.85 2.34
358 403 5.278858 GGATATTTCAGATCCGACGGTTAGT 60.279 44.000 14.79 0.00 33.85 2.24
359 404 2.933495 TTCAGATCCGACGGTTAGTG 57.067 50.000 14.79 7.08 0.00 2.74
360 405 1.100510 TCAGATCCGACGGTTAGTGG 58.899 55.000 14.79 0.42 0.00 4.00
361 406 1.100510 CAGATCCGACGGTTAGTGGA 58.899 55.000 14.79 0.00 35.55 4.02
362 407 1.101331 AGATCCGACGGTTAGTGGAC 58.899 55.000 14.79 0.00 34.50 4.02
363 408 0.813184 GATCCGACGGTTAGTGGACA 59.187 55.000 14.79 0.00 34.50 4.02
364 409 1.407979 GATCCGACGGTTAGTGGACAT 59.592 52.381 14.79 0.00 34.50 3.06
365 410 1.259609 TCCGACGGTTAGTGGACATT 58.740 50.000 14.79 0.00 0.00 2.71
366 411 1.203052 TCCGACGGTTAGTGGACATTC 59.797 52.381 14.79 0.00 0.00 2.67
367 412 1.265568 CGACGGTTAGTGGACATTCG 58.734 55.000 0.00 0.00 0.00 3.34
368 413 1.401931 CGACGGTTAGTGGACATTCGT 60.402 52.381 0.00 0.00 0.00 3.85
369 414 1.990563 GACGGTTAGTGGACATTCGTG 59.009 52.381 0.00 0.00 0.00 4.35
370 415 0.719465 CGGTTAGTGGACATTCGTGC 59.281 55.000 0.00 0.00 0.00 5.34
371 416 0.719465 GGTTAGTGGACATTCGTGCG 59.281 55.000 0.00 0.00 35.97 5.34
372 417 0.719465 GTTAGTGGACATTCGTGCGG 59.281 55.000 0.00 0.00 35.97 5.69
373 418 0.390603 TTAGTGGACATTCGTGCGGG 60.391 55.000 0.00 0.00 35.97 6.13
374 419 2.845752 TAGTGGACATTCGTGCGGGC 62.846 60.000 0.00 0.00 35.97 6.13
377 422 3.554692 GACATTCGTGCGGGCGAG 61.555 66.667 0.00 0.00 42.10 5.03
378 423 4.373116 ACATTCGTGCGGGCGAGT 62.373 61.111 0.00 0.00 42.10 4.18
379 424 3.118454 CATTCGTGCGGGCGAGTT 61.118 61.111 0.00 0.00 42.10 3.01
380 425 3.118454 ATTCGTGCGGGCGAGTTG 61.118 61.111 0.00 0.00 42.10 3.16
385 430 3.997397 TGCGGGCGAGTTGCTGTA 61.997 61.111 1.51 0.00 45.43 2.74
386 431 3.488090 GCGGGCGAGTTGCTGTAC 61.488 66.667 1.51 0.00 45.43 2.90
387 432 2.048597 CGGGCGAGTTGCTGTACA 60.049 61.111 1.51 0.00 45.43 2.90
388 433 1.666553 CGGGCGAGTTGCTGTACAA 60.667 57.895 1.51 0.00 45.43 2.41
396 441 2.817035 TTGCTGTACAACGCGGTAG 58.183 52.632 12.47 0.00 31.73 3.18
397 442 1.286354 TTGCTGTACAACGCGGTAGC 61.286 55.000 12.47 10.88 34.75 3.58
407 452 2.180017 GCGGTAGCGGAAACTCGA 59.820 61.111 17.08 0.00 0.00 4.04
408 453 1.444895 GCGGTAGCGGAAACTCGAA 60.445 57.895 17.08 0.00 0.00 3.71
409 454 1.010419 GCGGTAGCGGAAACTCGAAA 61.010 55.000 17.08 0.00 0.00 3.46
410 455 1.421382 CGGTAGCGGAAACTCGAAAA 58.579 50.000 6.39 0.00 0.00 2.29
411 456 1.794116 CGGTAGCGGAAACTCGAAAAA 59.206 47.619 6.39 0.00 0.00 1.94
435 480 2.863153 GCGCGATGCAGTTCTGTT 59.137 55.556 12.10 0.00 45.45 3.16
436 481 1.225854 GCGCGATGCAGTTCTGTTC 60.226 57.895 12.10 0.00 45.45 3.18
437 482 1.057822 CGCGATGCAGTTCTGTTCG 59.942 57.895 0.00 16.62 0.00 3.95
438 483 1.421485 GCGATGCAGTTCTGTTCGG 59.579 57.895 19.83 9.09 0.00 4.30
439 484 1.421485 CGATGCAGTTCTGTTCGGC 59.579 57.895 14.57 0.00 0.00 5.54
440 485 1.421485 GATGCAGTTCTGTTCGGCG 59.579 57.895 0.00 0.00 0.00 6.46
441 486 2.568935 GATGCAGTTCTGTTCGGCGC 62.569 60.000 0.00 0.00 0.00 6.53
442 487 4.430423 GCAGTTCTGTTCGGCGCG 62.430 66.667 0.00 0.00 0.00 6.86
443 488 3.036084 CAGTTCTGTTCGGCGCGT 61.036 61.111 8.43 0.00 0.00 6.01
444 489 3.036084 AGTTCTGTTCGGCGCGTG 61.036 61.111 8.43 0.00 0.00 5.34
445 490 4.072088 GTTCTGTTCGGCGCGTGG 62.072 66.667 8.43 0.00 0.00 4.94
446 491 4.287781 TTCTGTTCGGCGCGTGGA 62.288 61.111 8.43 1.91 0.00 4.02
447 492 4.717629 TCTGTTCGGCGCGTGGAG 62.718 66.667 8.43 0.00 0.00 3.86
451 496 4.063967 TTCGGCGCGTGGAGTGAT 62.064 61.111 8.43 0.00 0.00 3.06
452 497 3.583276 TTCGGCGCGTGGAGTGATT 62.583 57.895 8.43 0.00 0.00 2.57
453 498 3.118454 CGGCGCGTGGAGTGATTT 61.118 61.111 8.43 0.00 0.00 2.17
454 499 2.677003 CGGCGCGTGGAGTGATTTT 61.677 57.895 8.43 0.00 0.00 1.82
455 500 1.579429 GGCGCGTGGAGTGATTTTT 59.421 52.632 8.43 0.00 0.00 1.94
456 501 0.800012 GGCGCGTGGAGTGATTTTTA 59.200 50.000 8.43 0.00 0.00 1.52
457 502 1.198178 GGCGCGTGGAGTGATTTTTAA 59.802 47.619 8.43 0.00 0.00 1.52
458 503 2.159435 GGCGCGTGGAGTGATTTTTAAT 60.159 45.455 8.43 0.00 0.00 1.40
459 504 2.845967 GCGCGTGGAGTGATTTTTAATG 59.154 45.455 8.43 0.00 0.00 1.90
460 505 3.669557 GCGCGTGGAGTGATTTTTAATGT 60.670 43.478 8.43 0.00 0.00 2.71
461 506 3.845775 CGCGTGGAGTGATTTTTAATGTG 59.154 43.478 0.00 0.00 0.00 3.21
462 507 3.608073 GCGTGGAGTGATTTTTAATGTGC 59.392 43.478 0.00 0.00 0.00 4.57
463 508 3.845775 CGTGGAGTGATTTTTAATGTGCG 59.154 43.478 0.00 0.00 0.00 5.34
464 509 3.608073 GTGGAGTGATTTTTAATGTGCGC 59.392 43.478 0.00 0.00 0.00 6.09
465 510 2.845967 GGAGTGATTTTTAATGTGCGCG 59.154 45.455 0.00 0.00 0.00 6.86
466 511 3.488489 GAGTGATTTTTAATGTGCGCGT 58.512 40.909 8.43 0.00 0.00 6.01
467 512 3.233578 AGTGATTTTTAATGTGCGCGTG 58.766 40.909 8.43 0.00 0.00 5.34
468 513 3.058570 AGTGATTTTTAATGTGCGCGTGA 60.059 39.130 8.43 0.00 0.00 4.35
469 514 3.851403 GTGATTTTTAATGTGCGCGTGAT 59.149 39.130 8.43 0.00 0.00 3.06
470 515 4.323336 GTGATTTTTAATGTGCGCGTGATT 59.677 37.500 8.43 6.30 0.00 2.57
471 516 5.509972 GTGATTTTTAATGTGCGCGTGATTA 59.490 36.000 8.43 5.27 0.00 1.75
472 517 6.196353 GTGATTTTTAATGTGCGCGTGATTAT 59.804 34.615 8.43 0.00 0.00 1.28
473 518 6.749578 TGATTTTTAATGTGCGCGTGATTATT 59.250 30.769 8.43 4.83 0.00 1.40
474 519 5.923486 TTTTAATGTGCGCGTGATTATTG 57.077 34.783 8.43 0.00 0.00 1.90
475 520 1.826327 AATGTGCGCGTGATTATTGC 58.174 45.000 8.43 0.00 0.00 3.56
481 526 3.014036 CGTGATTATTGCGCGCCT 58.986 55.556 30.77 18.71 32.27 5.52
482 527 1.368019 CGTGATTATTGCGCGCCTG 60.368 57.895 30.77 4.97 32.27 4.85
483 528 1.655350 GTGATTATTGCGCGCCTGC 60.655 57.895 30.77 12.33 37.91 4.85
484 529 1.819208 TGATTATTGCGCGCCTGCT 60.819 52.632 30.77 12.78 39.65 4.24
485 530 1.369689 GATTATTGCGCGCCTGCTG 60.370 57.895 30.77 0.00 39.65 4.41
486 531 2.722130 GATTATTGCGCGCCTGCTGG 62.722 60.000 30.77 5.03 39.65 4.85
487 532 3.967393 TTATTGCGCGCCTGCTGGA 62.967 57.895 30.77 4.37 39.65 3.86
497 542 4.711949 CTGCTGGAGCTGCCGGTT 62.712 66.667 1.90 0.00 45.49 4.44
498 543 4.704833 TGCTGGAGCTGCCGGTTC 62.705 66.667 1.90 0.00 45.49 3.62
499 544 4.704833 GCTGGAGCTGCCGGTTCA 62.705 66.667 1.90 0.00 45.49 3.18
500 545 2.435586 CTGGAGCTGCCGGTTCAG 60.436 66.667 1.90 3.65 37.87 3.02
501 546 3.241530 TGGAGCTGCCGGTTCAGT 61.242 61.111 1.90 0.00 40.66 3.41
502 547 2.435059 GGAGCTGCCGGTTCAGTC 60.435 66.667 1.90 3.56 36.49 3.51
503 548 2.811317 GAGCTGCCGGTTCAGTCG 60.811 66.667 1.90 0.00 36.49 4.18
511 556 4.681978 GGTTCAGTCGGGCACGCT 62.682 66.667 1.67 0.19 40.69 5.07
512 557 2.260434 GTTCAGTCGGGCACGCTA 59.740 61.111 1.67 0.00 40.69 4.26
513 558 1.373748 GTTCAGTCGGGCACGCTAA 60.374 57.895 1.67 0.00 40.69 3.09
514 559 0.947180 GTTCAGTCGGGCACGCTAAA 60.947 55.000 1.67 0.00 40.69 1.85
515 560 0.249953 TTCAGTCGGGCACGCTAAAA 60.250 50.000 1.67 0.00 40.69 1.52
516 561 0.249953 TCAGTCGGGCACGCTAAAAA 60.250 50.000 1.67 0.00 40.69 1.94
517 562 0.165944 CAGTCGGGCACGCTAAAAAG 59.834 55.000 1.67 0.00 40.69 2.27
518 563 1.154282 GTCGGGCACGCTAAAAAGC 60.154 57.895 1.67 0.00 40.69 3.51
519 564 2.178273 CGGGCACGCTAAAAAGCC 59.822 61.111 0.00 0.00 46.28 4.35
521 566 2.951458 GGCACGCTAAAAAGCCGT 59.049 55.556 0.00 0.00 37.41 5.68
522 567 1.284715 GGCACGCTAAAAAGCCGTT 59.715 52.632 0.00 0.00 37.41 4.44
523 568 0.318360 GGCACGCTAAAAAGCCGTTT 60.318 50.000 0.00 0.00 37.41 3.60
524 569 1.483316 GCACGCTAAAAAGCCGTTTT 58.517 45.000 1.75 1.75 42.24 2.43
525 570 1.855978 GCACGCTAAAAAGCCGTTTTT 59.144 42.857 1.43 1.97 45.75 1.94
526 571 2.097589 GCACGCTAAAAAGCCGTTTTTC 60.098 45.455 0.13 0.00 43.42 2.29
527 572 3.109619 CACGCTAAAAAGCCGTTTTTCA 58.890 40.909 0.13 0.00 43.42 2.69
528 573 3.179599 CACGCTAAAAAGCCGTTTTTCAG 59.820 43.478 0.13 0.00 43.42 3.02
529 574 2.724174 CGCTAAAAAGCCGTTTTTCAGG 59.276 45.455 0.13 0.00 43.42 3.86
535 580 4.320928 CCGTTTTTCAGGCGCGCA 62.321 61.111 34.42 10.03 0.00 6.09
536 581 2.352915 CGTTTTTCAGGCGCGCAA 60.353 55.556 34.42 16.51 0.00 4.85
537 582 2.635305 CGTTTTTCAGGCGCGCAAC 61.635 57.895 34.42 24.49 0.00 4.17
538 583 1.299089 GTTTTTCAGGCGCGCAACT 60.299 52.632 34.42 19.33 0.00 3.16
539 584 0.869880 GTTTTTCAGGCGCGCAACTT 60.870 50.000 34.42 12.32 0.00 2.66
540 585 0.663688 TTTTTCAGGCGCGCAACTTA 59.336 45.000 34.42 10.48 0.00 2.24
541 586 0.878416 TTTTCAGGCGCGCAACTTAT 59.122 45.000 34.42 7.92 0.00 1.73
542 587 0.878416 TTTCAGGCGCGCAACTTATT 59.122 45.000 34.42 5.62 0.00 1.40
543 588 0.878416 TTCAGGCGCGCAACTTATTT 59.122 45.000 34.42 4.09 0.00 1.40
544 589 1.728068 TCAGGCGCGCAACTTATTTA 58.272 45.000 34.42 3.93 0.00 1.40
545 590 1.663643 TCAGGCGCGCAACTTATTTAG 59.336 47.619 34.42 8.51 0.00 1.85
546 591 0.377203 AGGCGCGCAACTTATTTAGC 59.623 50.000 34.42 10.63 0.00 3.09
552 597 3.592381 CGCAACTTATTTAGCGCATCT 57.408 42.857 11.47 0.00 43.80 2.90
553 598 3.940303 CGCAACTTATTTAGCGCATCTT 58.060 40.909 11.47 0.00 43.80 2.40
554 599 3.720818 CGCAACTTATTTAGCGCATCTTG 59.279 43.478 11.47 0.28 43.80 3.02
555 600 4.037690 GCAACTTATTTAGCGCATCTTGG 58.962 43.478 11.47 0.00 0.00 3.61
556 601 4.201910 GCAACTTATTTAGCGCATCTTGGA 60.202 41.667 11.47 0.00 0.00 3.53
557 602 5.505286 CAACTTATTTAGCGCATCTTGGAG 58.495 41.667 11.47 1.35 0.00 3.86
558 603 5.023533 ACTTATTTAGCGCATCTTGGAGA 57.976 39.130 11.47 0.00 0.00 3.71
559 604 5.615289 ACTTATTTAGCGCATCTTGGAGAT 58.385 37.500 11.47 0.00 34.74 2.75
650 696 0.184933 CACCAACCCCACTTTCCTCA 59.815 55.000 0.00 0.00 0.00 3.86
656 702 5.015817 ACCAACCCCACTTTCCTCAATATTA 59.984 40.000 0.00 0.00 0.00 0.98
718 764 2.985406 ACACTCGAACTTCTCCGTAC 57.015 50.000 0.00 0.00 0.00 3.67
766 812 0.744414 ACGATGGGGAGCGAACAATG 60.744 55.000 0.00 0.00 0.00 2.82
825 871 5.050091 CCTGCGGCACAAATAGTTAAGATAG 60.050 44.000 0.00 0.00 0.00 2.08
868 914 3.366739 GACCTAACCCCTGACGCCG 62.367 68.421 0.00 0.00 0.00 6.46
1389 1493 0.377554 CGACCTCTACTACCAGCACG 59.622 60.000 0.00 0.00 0.00 5.34
1438 1542 0.389391 ACGGTGAGTGAGTCAACCTG 59.611 55.000 10.13 6.78 40.15 4.00
1467 1761 2.418746 CCCAATCCCGTTGACTAGTCAG 60.419 54.545 23.97 14.36 41.13 3.51
1495 1789 1.877443 AGCGTTGACCAAATACACCAC 59.123 47.619 0.00 0.00 0.00 4.16
1496 1790 1.399215 GCGTTGACCAAATACACCACG 60.399 52.381 0.00 0.00 0.00 4.94
1497 1791 1.195900 CGTTGACCAAATACACCACGG 59.804 52.381 0.00 0.00 0.00 4.94
1515 1809 2.047679 GGTGACGCTCATCCGTATAC 57.952 55.000 0.00 0.00 42.24 1.47
1516 1810 1.607628 GGTGACGCTCATCCGTATACT 59.392 52.381 0.56 0.00 42.24 2.12
1517 1811 2.350580 GGTGACGCTCATCCGTATACTC 60.351 54.545 0.56 0.00 42.24 2.59
1518 1812 1.878088 TGACGCTCATCCGTATACTCC 59.122 52.381 0.56 0.00 42.24 3.85
1519 1813 1.199558 GACGCTCATCCGTATACTCCC 59.800 57.143 0.56 0.00 42.24 4.30
1520 1814 1.202903 ACGCTCATCCGTATACTCCCT 60.203 52.381 0.56 0.00 40.08 4.20
1521 1815 1.469308 CGCTCATCCGTATACTCCCTC 59.531 57.143 0.56 0.00 0.00 4.30
1522 1816 1.819903 GCTCATCCGTATACTCCCTCC 59.180 57.143 0.56 0.00 0.00 4.30
1523 1817 2.448453 CTCATCCGTATACTCCCTCCC 58.552 57.143 0.56 0.00 0.00 4.30
1526 1820 0.776176 TCCGTATACTCCCTCCCTCC 59.224 60.000 0.56 0.00 0.00 4.30
1527 1821 0.608582 CCGTATACTCCCTCCCTCCG 60.609 65.000 0.56 0.00 0.00 4.63
1528 1822 0.110104 CGTATACTCCCTCCCTCCGT 59.890 60.000 0.56 0.00 0.00 4.69
1529 1823 1.881498 CGTATACTCCCTCCCTCCGTC 60.881 61.905 0.56 0.00 0.00 4.79
1530 1824 0.776176 TATACTCCCTCCCTCCGTCC 59.224 60.000 0.00 0.00 0.00 4.79
1535 1942 2.123854 CCTCCCTCCGTCCGATGA 60.124 66.667 0.00 0.00 0.00 2.92
1545 1952 2.418976 TCCGTCCGATGATATAAGAGCG 59.581 50.000 0.00 0.00 0.00 5.03
1547 1954 3.366070 CCGTCCGATGATATAAGAGCGTT 60.366 47.826 0.00 0.00 0.00 4.84
1551 1958 3.604198 CCGATGATATAAGAGCGTTGTCG 59.396 47.826 0.00 0.00 40.37 4.35
1569 2067 8.227731 CGTTGTCGCTCTTTATATTATGATGA 57.772 34.615 0.00 0.00 0.00 2.92
1570 2068 8.368857 CGTTGTCGCTCTTTATATTATGATGAG 58.631 37.037 6.87 6.87 0.00 2.90
1584 2082 1.564818 TGATGAGACGGAGGGAGTACT 59.435 52.381 0.00 0.00 0.00 2.73
1585 2083 2.775960 TGATGAGACGGAGGGAGTACTA 59.224 50.000 0.00 0.00 0.00 1.82
1586 2084 2.706339 TGAGACGGAGGGAGTACTAC 57.294 55.000 0.00 0.00 0.00 2.73
1587 2085 1.911357 TGAGACGGAGGGAGTACTACA 59.089 52.381 7.57 0.00 0.00 2.74
1597 2095 5.655532 GGAGGGAGTACTACAAACACTATCA 59.344 44.000 7.57 0.00 0.00 2.15
1616 2114 8.873830 CACTATCAATGAGAGAAATTTACACGT 58.126 33.333 12.24 0.00 0.00 4.49
1648 2147 6.125029 CCATAGATGGGTGAACTCAAGAAAT 58.875 40.000 0.10 0.00 44.31 2.17
1671 2280 5.592587 TGGTTGAAGAGGGGAAGATAAAA 57.407 39.130 0.00 0.00 0.00 1.52
2026 3063 3.442996 GCATGTCTGCCTACTTCGT 57.557 52.632 0.00 0.00 42.88 3.85
2057 3096 7.327032 GTGTATTTGACAAATCCTTCTCTTTGC 59.673 37.037 16.57 0.00 40.66 3.68
2223 3262 4.329545 GCGAGGAAGGGGTGCACA 62.330 66.667 20.43 0.00 0.00 4.57
2341 4039 1.300931 GTGCTGTCCGTGAAGCTCA 60.301 57.895 0.00 0.00 40.21 4.26
2345 4043 1.821061 CTGTCCGTGAAGCTCACCCT 61.821 60.000 9.71 0.00 44.20 4.34
2378 4076 1.469940 CGAGCTTGAGTCCTATGCGTT 60.470 52.381 0.00 0.00 0.00 4.84
2413 4118 0.807275 CGATCGCTGCCATGACTTCA 60.807 55.000 0.26 0.00 0.00 3.02
2448 4153 0.327576 ATTCCGAGACCCCTCCCATT 60.328 55.000 0.00 0.00 36.04 3.16
2527 4234 7.174253 TGCTTGTTTCTTAATTTCTCGTACCAT 59.826 33.333 0.00 0.00 0.00 3.55
2533 4240 8.801882 TTCTTAATTTCTCGTACCATTGGAAT 57.198 30.769 10.37 0.00 0.00 3.01
2864 4583 3.722908 TTCATGTTGTATCCCGGGAAA 57.277 42.857 30.84 15.53 0.00 3.13
2868 4587 3.564053 TGTTGTATCCCGGGAAATACC 57.436 47.619 30.84 16.20 38.08 2.73
3013 4736 8.995027 ATGCAAAATAACTCCCAACTCATATA 57.005 30.769 0.00 0.00 0.00 0.86
3014 4737 8.815565 TGCAAAATAACTCCCAACTCATATAA 57.184 30.769 0.00 0.00 0.00 0.98
3067 4790 7.872993 TCCGAGATTGTTGAAGATATTGGTATC 59.127 37.037 0.00 0.00 37.55 2.24
3096 4819 4.407365 TGTAGTCTCTCATCCACTTCACA 58.593 43.478 0.00 0.00 0.00 3.58
3170 4894 6.533730 AGTGAAGATGGTTGATACAACTGAA 58.466 36.000 13.05 2.37 0.00 3.02
3314 5049 2.594592 GCACCCTTCACGCTTGGT 60.595 61.111 0.00 0.00 0.00 3.67
3315 5050 1.302192 GCACCCTTCACGCTTGGTA 60.302 57.895 0.00 0.00 0.00 3.25
3316 5051 0.887387 GCACCCTTCACGCTTGGTAA 60.887 55.000 0.00 0.00 0.00 2.85
3317 5052 1.600023 CACCCTTCACGCTTGGTAAA 58.400 50.000 0.00 0.00 0.00 2.01
3318 5053 1.265905 CACCCTTCACGCTTGGTAAAC 59.734 52.381 0.00 0.00 0.00 2.01
3319 5054 0.879090 CCCTTCACGCTTGGTAAACC 59.121 55.000 0.00 0.00 0.00 3.27
3320 5055 0.879090 CCTTCACGCTTGGTAAACCC 59.121 55.000 0.00 0.00 34.29 4.11
3322 5057 1.535462 CTTCACGCTTGGTAAACCCAG 59.465 52.381 0.00 0.00 46.31 4.45
3323 5058 0.250553 TCACGCTTGGTAAACCCAGG 60.251 55.000 2.71 0.00 46.31 4.45
3324 5059 0.250553 CACGCTTGGTAAACCCAGGA 60.251 55.000 2.71 0.00 46.31 3.86
3325 5060 0.475044 ACGCTTGGTAAACCCAGGAA 59.525 50.000 2.71 0.00 46.31 3.36
3326 5061 1.133730 ACGCTTGGTAAACCCAGGAAA 60.134 47.619 2.71 0.00 46.31 3.13
3327 5062 1.957877 CGCTTGGTAAACCCAGGAAAA 59.042 47.619 2.71 0.00 46.31 2.29
3330 5065 2.732844 TGGTAAACCCAGGAAAACGT 57.267 45.000 0.00 0.00 38.72 3.99
3331 5066 2.574450 TGGTAAACCCAGGAAAACGTC 58.426 47.619 0.00 0.00 38.72 4.34
3332 5067 1.532437 GGTAAACCCAGGAAAACGTCG 59.468 52.381 0.00 0.00 0.00 5.12
3333 5068 1.532437 GTAAACCCAGGAAAACGTCGG 59.468 52.381 0.00 0.00 0.00 4.79
3334 5069 0.820482 AAACCCAGGAAAACGTCGGG 60.820 55.000 0.00 0.00 43.02 5.14
3335 5070 3.053896 CCCAGGAAAACGTCGGGC 61.054 66.667 0.00 0.00 0.00 6.13
3337 5072 3.419759 CAGGAAAACGTCGGGCCG 61.420 66.667 22.51 22.51 0.00 6.13
3352 5087 4.726304 CCGGGCCGGGCTTGTAAA 62.726 66.667 37.27 0.00 44.15 2.01
3353 5088 2.673687 CGGGCCGGGCTTGTAAAA 60.674 61.111 28.80 0.00 0.00 1.52
3354 5089 2.696759 CGGGCCGGGCTTGTAAAAG 61.697 63.158 28.80 5.53 0.00 2.27
3364 5099 3.406728 GCTTGTAAAAGCCCGATCTTC 57.593 47.619 6.34 0.00 39.81 2.87
3366 5101 3.378427 GCTTGTAAAAGCCCGATCTTCAT 59.622 43.478 6.34 0.00 39.81 2.57
3367 5102 4.142381 GCTTGTAAAAGCCCGATCTTCATT 60.142 41.667 6.34 0.00 39.81 2.57
3368 5103 5.622233 GCTTGTAAAAGCCCGATCTTCATTT 60.622 40.000 6.34 0.00 39.81 2.32
3369 5104 5.560966 TGTAAAAGCCCGATCTTCATTTC 57.439 39.130 0.00 0.00 0.00 2.17
3370 5105 5.253330 TGTAAAAGCCCGATCTTCATTTCT 58.747 37.500 0.00 0.00 0.00 2.52
3372 5107 3.634397 AAGCCCGATCTTCATTTCTCA 57.366 42.857 0.00 0.00 0.00 3.27
3373 5108 3.634397 AGCCCGATCTTCATTTCTCAA 57.366 42.857 0.00 0.00 0.00 3.02
3374 5109 3.539604 AGCCCGATCTTCATTTCTCAAG 58.460 45.455 0.00 0.00 0.00 3.02
3375 5110 2.032675 GCCCGATCTTCATTTCTCAAGC 59.967 50.000 0.00 0.00 0.00 4.01
3376 5111 2.615912 CCCGATCTTCATTTCTCAAGCC 59.384 50.000 0.00 0.00 0.00 4.35
3377 5112 2.615912 CCGATCTTCATTTCTCAAGCCC 59.384 50.000 0.00 0.00 0.00 5.19
3378 5113 2.286294 CGATCTTCATTTCTCAAGCCCG 59.714 50.000 0.00 0.00 0.00 6.13
3379 5114 3.535561 GATCTTCATTTCTCAAGCCCGA 58.464 45.455 0.00 0.00 0.00 5.14
3380 5115 2.977914 TCTTCATTTCTCAAGCCCGAG 58.022 47.619 0.00 0.00 0.00 4.63
3381 5116 1.399791 CTTCATTTCTCAAGCCCGAGC 59.600 52.381 0.00 0.00 40.32 5.03
3382 5117 0.392998 TCATTTCTCAAGCCCGAGCC 60.393 55.000 0.00 0.00 41.25 4.70
3383 5118 0.393537 CATTTCTCAAGCCCGAGCCT 60.394 55.000 0.00 0.00 41.25 4.58
3384 5119 0.393537 ATTTCTCAAGCCCGAGCCTG 60.394 55.000 0.00 0.00 41.25 4.85
3385 5120 2.469465 TTTCTCAAGCCCGAGCCTGG 62.469 60.000 0.00 0.00 41.25 4.45
3404 5139 1.956802 CCCGAAGCCCAAAACACTC 59.043 57.895 0.00 0.00 0.00 3.51
3405 5140 1.524008 CCCGAAGCCCAAAACACTCC 61.524 60.000 0.00 0.00 0.00 3.85
3406 5141 1.524008 CCGAAGCCCAAAACACTCCC 61.524 60.000 0.00 0.00 0.00 4.30
3408 5143 0.961753 GAAGCCCAAAACACTCCCTG 59.038 55.000 0.00 0.00 0.00 4.45
3409 5144 0.261696 AAGCCCAAAACACTCCCTGT 59.738 50.000 0.00 0.00 32.89 4.00
3410 5145 0.261696 AGCCCAAAACACTCCCTGTT 59.738 50.000 0.00 0.00 45.68 3.16
3419 5154 0.961753 CACTCCCTGTTTTCAAGCCC 59.038 55.000 0.00 0.00 0.00 5.19
3420 5155 0.537371 ACTCCCTGTTTTCAAGCCCG 60.537 55.000 0.00 0.00 0.00 6.13
3423 5158 1.244019 CCCTGTTTTCAAGCCCGAGG 61.244 60.000 0.00 0.00 0.00 4.63
3433 5168 4.678743 GCCCGAGGCCCAAAAGGT 62.679 66.667 0.00 0.00 44.06 3.50
3434 5169 2.361230 CCCGAGGCCCAAAAGGTC 60.361 66.667 0.00 0.00 42.50 3.85
3441 5176 3.083386 CCCAAAAGGTCGGCCCTA 58.917 61.111 0.08 0.00 45.47 3.53
3442 5177 1.381076 CCCAAAAGGTCGGCCCTAA 59.619 57.895 0.08 0.00 45.47 2.69
3443 5178 0.251430 CCCAAAAGGTCGGCCCTAAA 60.251 55.000 0.08 0.00 45.47 1.85
3444 5179 1.618616 CCCAAAAGGTCGGCCCTAAAT 60.619 52.381 0.08 0.00 45.47 1.40
3445 5180 1.749063 CCAAAAGGTCGGCCCTAAATC 59.251 52.381 0.08 0.00 45.47 2.17
3446 5181 2.442413 CAAAAGGTCGGCCCTAAATCA 58.558 47.619 0.08 0.00 45.47 2.57
3447 5182 2.823154 CAAAAGGTCGGCCCTAAATCAA 59.177 45.455 0.08 0.00 45.47 2.57
3448 5183 2.420058 AAGGTCGGCCCTAAATCAAG 57.580 50.000 0.08 0.00 45.47 3.02
3449 5184 0.107165 AGGTCGGCCCTAAATCAAGC 60.107 55.000 0.08 0.00 43.87 4.01
3450 5185 1.101635 GGTCGGCCCTAAATCAAGCC 61.102 60.000 0.00 0.00 42.18 4.35
3451 5186 1.101635 GTCGGCCCTAAATCAAGCCC 61.102 60.000 0.00 0.00 42.66 5.19
3452 5187 2.186826 CGGCCCTAAATCAAGCCCG 61.187 63.158 0.00 0.00 42.66 6.13
3453 5188 1.226262 GGCCCTAAATCAAGCCCGA 59.774 57.895 0.00 0.00 39.60 5.14
3454 5189 0.395173 GGCCCTAAATCAAGCCCGAA 60.395 55.000 0.00 0.00 39.60 4.30
3455 5190 1.025041 GCCCTAAATCAAGCCCGAAG 58.975 55.000 0.00 0.00 0.00 3.79
3456 5191 1.025041 CCCTAAATCAAGCCCGAAGC 58.975 55.000 0.00 0.00 44.25 3.86
3457 5192 1.025041 CCTAAATCAAGCCCGAAGCC 58.975 55.000 0.00 0.00 45.47 4.35
3458 5193 1.025041 CTAAATCAAGCCCGAAGCCC 58.975 55.000 0.00 0.00 45.47 5.19
3459 5194 0.746563 TAAATCAAGCCCGAAGCCCG 60.747 55.000 0.00 0.00 45.47 6.13
3468 5203 2.890474 CGAAGCCCGGTCCGAATG 60.890 66.667 14.39 1.67 33.91 2.67
3469 5204 3.202706 GAAGCCCGGTCCGAATGC 61.203 66.667 14.39 12.38 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.827322 TGCTGCCTTTTACATGCTGAAT 59.173 40.909 0.00 0.00 0.00 2.57
48 49 9.578439 GCATTTTGATTCTAGCAGTAAAAATCT 57.422 29.630 0.00 0.00 0.00 2.40
49 50 9.357652 TGCATTTTGATTCTAGCAGTAAAAATC 57.642 29.630 0.00 0.00 0.00 2.17
52 53 7.090173 GGTGCATTTTGATTCTAGCAGTAAAA 58.910 34.615 0.00 0.00 32.03 1.52
59 60 2.101415 GGGGGTGCATTTTGATTCTAGC 59.899 50.000 0.00 0.00 0.00 3.42
62 63 1.901833 GTGGGGGTGCATTTTGATTCT 59.098 47.619 0.00 0.00 0.00 2.40
76 77 2.499693 ACTTCTTTTGTTGTTGTGGGGG 59.500 45.455 0.00 0.00 0.00 5.40
89 90 9.561069 CTATAATACACTGGGCATACTTCTTTT 57.439 33.333 0.00 0.00 0.00 2.27
122 123 6.811665 TGTTTCTCCAAGTCATCATTAGTACG 59.188 38.462 0.00 0.00 0.00 3.67
129 130 5.936956 GTCTTCTGTTTCTCCAAGTCATCAT 59.063 40.000 0.00 0.00 0.00 2.45
130 131 5.163311 TGTCTTCTGTTTCTCCAAGTCATCA 60.163 40.000 0.00 0.00 0.00 3.07
148 159 2.977405 AGCGTTTCTGCAATGTCTTC 57.023 45.000 0.00 0.00 37.31 2.87
154 165 5.390991 GCTAAGTCTAAAGCGTTTCTGCAAT 60.391 40.000 0.00 0.00 37.31 3.56
168 179 8.621532 ATCACAAAAGATGTTGCTAAGTCTAA 57.378 30.769 0.00 0.00 41.46 2.10
171 216 9.922305 GTATATCACAAAAGATGTTGCTAAGTC 57.078 33.333 0.00 0.00 41.46 3.01
176 221 7.341805 AGGAGTATATCACAAAAGATGTTGCT 58.658 34.615 0.00 0.00 41.46 3.91
179 224 7.495934 CGGAAGGAGTATATCACAAAAGATGTT 59.504 37.037 0.00 0.00 41.46 2.71
196 241 4.961099 AGGCTAAATTAGTACGGAAGGAGT 59.039 41.667 1.68 0.00 0.00 3.85
197 242 5.532664 AGGCTAAATTAGTACGGAAGGAG 57.467 43.478 1.68 0.00 0.00 3.69
199 244 8.496707 TTTTTAGGCTAAATTAGTACGGAAGG 57.503 34.615 19.65 0.00 0.00 3.46
222 267 8.422566 TCTTCCCACCAAAATATAAAACGTTTT 58.577 29.630 27.65 27.65 0.00 2.43
223 268 7.953752 TCTTCCCACCAAAATATAAAACGTTT 58.046 30.769 7.96 7.96 0.00 3.60
225 270 6.152154 CCTCTTCCCACCAAAATATAAAACGT 59.848 38.462 0.00 0.00 0.00 3.99
226 271 6.405397 CCCTCTTCCCACCAAAATATAAAACG 60.405 42.308 0.00 0.00 0.00 3.60
227 272 6.127168 CCCCTCTTCCCACCAAAATATAAAAC 60.127 42.308 0.00 0.00 0.00 2.43
228 273 5.961421 CCCCTCTTCCCACCAAAATATAAAA 59.039 40.000 0.00 0.00 0.00 1.52
229 274 5.524535 CCCCTCTTCCCACCAAAATATAAA 58.475 41.667 0.00 0.00 0.00 1.40
230 275 4.078863 CCCCCTCTTCCCACCAAAATATAA 60.079 45.833 0.00 0.00 0.00 0.98
231 276 3.465588 CCCCCTCTTCCCACCAAAATATA 59.534 47.826 0.00 0.00 0.00 0.86
232 277 2.247372 CCCCCTCTTCCCACCAAAATAT 59.753 50.000 0.00 0.00 0.00 1.28
233 278 1.643811 CCCCCTCTTCCCACCAAAATA 59.356 52.381 0.00 0.00 0.00 1.40
235 280 0.703056 TCCCCCTCTTCCCACCAAAA 60.703 55.000 0.00 0.00 0.00 2.44
236 281 0.703056 TTCCCCCTCTTCCCACCAAA 60.703 55.000 0.00 0.00 0.00 3.28
237 282 1.072538 TTCCCCCTCTTCCCACCAA 60.073 57.895 0.00 0.00 0.00 3.67
238 283 1.541368 CTTCCCCCTCTTCCCACCA 60.541 63.158 0.00 0.00 0.00 4.17
239 284 1.541620 ACTTCCCCCTCTTCCCACC 60.542 63.158 0.00 0.00 0.00 4.61
240 285 1.685820 CACTTCCCCCTCTTCCCAC 59.314 63.158 0.00 0.00 0.00 4.61
243 288 2.677848 GCCACTTCCCCCTCTTCC 59.322 66.667 0.00 0.00 0.00 3.46
244 289 2.269241 CGCCACTTCCCCCTCTTC 59.731 66.667 0.00 0.00 0.00 2.87
245 290 4.035102 GCGCCACTTCCCCCTCTT 62.035 66.667 0.00 0.00 0.00 2.85
267 312 3.480133 CTCCCACCGATCCCCACC 61.480 72.222 0.00 0.00 0.00 4.61
268 313 3.480133 CCTCCCACCGATCCCCAC 61.480 72.222 0.00 0.00 0.00 4.61
270 315 2.366435 TTCCTCCCACCGATCCCC 60.366 66.667 0.00 0.00 0.00 4.81
271 316 3.108288 GCTTCCTCCCACCGATCCC 62.108 68.421 0.00 0.00 0.00 3.85
272 317 2.506472 GCTTCCTCCCACCGATCC 59.494 66.667 0.00 0.00 0.00 3.36
273 318 2.107141 CGCTTCCTCCCACCGATC 59.893 66.667 0.00 0.00 0.00 3.69
274 319 4.162690 GCGCTTCCTCCCACCGAT 62.163 66.667 0.00 0.00 0.00 4.18
296 341 2.107141 CATCTTCTCCGGCGACCC 59.893 66.667 9.30 0.00 0.00 4.46
297 342 2.107141 CCATCTTCTCCGGCGACC 59.893 66.667 9.30 0.00 0.00 4.79
298 343 2.107141 CCCATCTTCTCCGGCGAC 59.893 66.667 9.30 0.00 0.00 5.19
299 344 3.154473 CCCCATCTTCTCCGGCGA 61.154 66.667 9.30 0.00 0.00 5.54
301 346 1.147153 CTTCCCCATCTTCTCCGGC 59.853 63.158 0.00 0.00 0.00 6.13
302 347 0.983378 ACCTTCCCCATCTTCTCCGG 60.983 60.000 0.00 0.00 0.00 5.14
303 348 0.179000 CACCTTCCCCATCTTCTCCG 59.821 60.000 0.00 0.00 0.00 4.63
304 349 0.106967 GCACCTTCCCCATCTTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
305 350 0.462759 CGCACCTTCCCCATCTTCTC 60.463 60.000 0.00 0.00 0.00 2.87
306 351 1.604378 CGCACCTTCCCCATCTTCT 59.396 57.895 0.00 0.00 0.00 2.85
308 353 2.044946 GCGCACCTTCCCCATCTT 60.045 61.111 0.30 0.00 0.00 2.40
309 354 4.473520 CGCGCACCTTCCCCATCT 62.474 66.667 8.75 0.00 0.00 2.90
323 368 2.466518 GAAATATCCACTCGCGCGCG 62.467 60.000 44.84 44.84 41.35 6.86
325 370 0.504384 CTGAAATATCCACTCGCGCG 59.496 55.000 26.76 26.76 0.00 6.86
326 371 1.852942 TCTGAAATATCCACTCGCGC 58.147 50.000 0.00 0.00 0.00 6.86
327 372 2.989840 GGATCTGAAATATCCACTCGCG 59.010 50.000 0.00 0.00 42.21 5.87
328 373 2.989840 CGGATCTGAAATATCCACTCGC 59.010 50.000 0.00 0.00 42.69 5.03
329 374 4.230657 GTCGGATCTGAAATATCCACTCG 58.769 47.826 5.62 0.00 42.69 4.18
331 376 3.005897 CCGTCGGATCTGAAATATCCACT 59.994 47.826 4.91 0.00 42.69 4.00
332 377 3.243771 ACCGTCGGATCTGAAATATCCAC 60.244 47.826 20.51 0.00 42.69 4.02
333 378 2.963101 ACCGTCGGATCTGAAATATCCA 59.037 45.455 20.51 0.00 42.69 3.41
334 379 3.662247 ACCGTCGGATCTGAAATATCC 57.338 47.619 20.51 0.00 39.71 2.59
335 380 5.629849 CACTAACCGTCGGATCTGAAATATC 59.370 44.000 20.51 0.00 0.00 1.63
337 382 4.202080 CCACTAACCGTCGGATCTGAAATA 60.202 45.833 20.51 0.00 0.00 1.40
338 383 3.430374 CCACTAACCGTCGGATCTGAAAT 60.430 47.826 20.51 0.00 0.00 2.17
339 384 2.094390 CCACTAACCGTCGGATCTGAAA 60.094 50.000 20.51 0.00 0.00 2.69
341 386 1.100510 CCACTAACCGTCGGATCTGA 58.899 55.000 20.51 0.00 0.00 3.27
342 387 1.100510 TCCACTAACCGTCGGATCTG 58.899 55.000 20.51 5.25 0.00 2.90
343 388 1.101331 GTCCACTAACCGTCGGATCT 58.899 55.000 20.51 4.35 0.00 2.75
344 389 0.813184 TGTCCACTAACCGTCGGATC 59.187 55.000 20.51 0.00 0.00 3.36
345 390 1.481871 ATGTCCACTAACCGTCGGAT 58.518 50.000 20.51 9.18 0.00 4.18
346 391 1.203052 GAATGTCCACTAACCGTCGGA 59.797 52.381 20.51 0.00 0.00 4.55
347 392 1.636988 GAATGTCCACTAACCGTCGG 58.363 55.000 10.48 10.48 0.00 4.79
348 393 1.265568 CGAATGTCCACTAACCGTCG 58.734 55.000 0.00 0.00 0.00 5.12
349 394 1.990563 CACGAATGTCCACTAACCGTC 59.009 52.381 0.00 0.00 0.00 4.79
350 395 1.938016 GCACGAATGTCCACTAACCGT 60.938 52.381 0.00 0.00 0.00 4.83
351 396 0.719465 GCACGAATGTCCACTAACCG 59.281 55.000 0.00 0.00 0.00 4.44
352 397 0.719465 CGCACGAATGTCCACTAACC 59.281 55.000 0.00 0.00 0.00 2.85
353 398 0.719465 CCGCACGAATGTCCACTAAC 59.281 55.000 0.00 0.00 0.00 2.34
354 399 0.390603 CCCGCACGAATGTCCACTAA 60.391 55.000 0.00 0.00 0.00 2.24
355 400 1.216977 CCCGCACGAATGTCCACTA 59.783 57.895 0.00 0.00 0.00 2.74
356 401 2.047274 CCCGCACGAATGTCCACT 60.047 61.111 0.00 0.00 0.00 4.00
357 402 3.799755 GCCCGCACGAATGTCCAC 61.800 66.667 0.00 0.00 0.00 4.02
360 405 3.554692 CTCGCCCGCACGAATGTC 61.555 66.667 0.00 0.00 42.39 3.06
361 406 3.876589 AACTCGCCCGCACGAATGT 62.877 57.895 0.00 0.00 42.39 2.71
362 407 3.118454 AACTCGCCCGCACGAATG 61.118 61.111 0.00 0.00 42.39 2.67
363 408 3.118454 CAACTCGCCCGCACGAAT 61.118 61.111 0.00 0.00 42.39 3.34
368 413 3.997397 TACAGCAACTCGCCCGCA 61.997 61.111 0.00 0.00 44.04 5.69
369 414 3.488090 GTACAGCAACTCGCCCGC 61.488 66.667 0.00 0.00 44.04 6.13
370 415 1.666553 TTGTACAGCAACTCGCCCG 60.667 57.895 0.00 0.00 44.04 6.13
371 416 4.371975 TTGTACAGCAACTCGCCC 57.628 55.556 0.00 0.00 44.04 6.13
378 423 1.286354 GCTACCGCGTTGTACAGCAA 61.286 55.000 10.49 0.00 34.16 3.91
379 424 1.735198 GCTACCGCGTTGTACAGCA 60.735 57.895 10.49 0.00 0.00 4.41
380 425 3.078560 GCTACCGCGTTGTACAGC 58.921 61.111 4.92 0.00 0.00 4.40
390 435 1.010419 TTTCGAGTTTCCGCTACCGC 61.010 55.000 0.00 0.00 0.00 5.68
391 436 1.421382 TTTTCGAGTTTCCGCTACCG 58.579 50.000 0.00 0.00 0.00 4.02
408 453 1.730547 GCATCGCGCACTGCTTTTT 60.731 52.632 20.44 0.00 43.27 1.94
409 454 2.126734 GCATCGCGCACTGCTTTT 60.127 55.556 20.44 0.00 43.27 2.27
418 463 1.225854 GAACAGAACTGCATCGCGC 60.226 57.895 0.00 0.00 42.89 6.86
419 464 1.057822 CGAACAGAACTGCATCGCG 59.942 57.895 0.00 0.00 36.77 5.87
420 465 1.421485 CCGAACAGAACTGCATCGC 59.579 57.895 18.41 0.00 39.98 4.58
421 466 1.421485 GCCGAACAGAACTGCATCG 59.579 57.895 17.48 17.48 40.57 3.84
422 467 1.421485 CGCCGAACAGAACTGCATC 59.579 57.895 1.46 0.73 0.00 3.91
423 468 2.680913 GCGCCGAACAGAACTGCAT 61.681 57.895 0.00 0.00 0.00 3.96
424 469 3.345808 GCGCCGAACAGAACTGCA 61.346 61.111 0.00 0.00 0.00 4.41
425 470 4.430423 CGCGCCGAACAGAACTGC 62.430 66.667 0.00 0.00 0.00 4.40
426 471 3.036084 ACGCGCCGAACAGAACTG 61.036 61.111 5.73 0.00 0.00 3.16
427 472 3.036084 CACGCGCCGAACAGAACT 61.036 61.111 5.73 0.00 0.00 3.01
428 473 4.072088 CCACGCGCCGAACAGAAC 62.072 66.667 5.73 0.00 0.00 3.01
429 474 4.287781 TCCACGCGCCGAACAGAA 62.288 61.111 5.73 0.00 0.00 3.02
430 475 4.717629 CTCCACGCGCCGAACAGA 62.718 66.667 5.73 0.00 0.00 3.41
434 479 3.583276 AATCACTCCACGCGCCGAA 62.583 57.895 5.73 0.00 0.00 4.30
435 480 3.583276 AAATCACTCCACGCGCCGA 62.583 57.895 5.73 0.00 0.00 5.54
436 481 2.182614 AAAAATCACTCCACGCGCCG 62.183 55.000 5.73 0.00 0.00 6.46
437 482 0.800012 TAAAAATCACTCCACGCGCC 59.200 50.000 5.73 0.00 0.00 6.53
438 483 2.604969 TTAAAAATCACTCCACGCGC 57.395 45.000 5.73 0.00 0.00 6.86
439 484 3.845775 CACATTAAAAATCACTCCACGCG 59.154 43.478 3.53 3.53 0.00 6.01
440 485 3.608073 GCACATTAAAAATCACTCCACGC 59.392 43.478 0.00 0.00 0.00 5.34
441 486 3.845775 CGCACATTAAAAATCACTCCACG 59.154 43.478 0.00 0.00 0.00 4.94
442 487 3.608073 GCGCACATTAAAAATCACTCCAC 59.392 43.478 0.30 0.00 0.00 4.02
443 488 3.669290 CGCGCACATTAAAAATCACTCCA 60.669 43.478 8.75 0.00 0.00 3.86
444 489 2.845967 CGCGCACATTAAAAATCACTCC 59.154 45.455 8.75 0.00 0.00 3.85
445 490 3.297979 CACGCGCACATTAAAAATCACTC 59.702 43.478 5.73 0.00 0.00 3.51
446 491 3.058570 TCACGCGCACATTAAAAATCACT 60.059 39.130 5.73 0.00 0.00 3.41
447 492 3.230355 TCACGCGCACATTAAAAATCAC 58.770 40.909 5.73 0.00 0.00 3.06
448 493 3.544356 TCACGCGCACATTAAAAATCA 57.456 38.095 5.73 0.00 0.00 2.57
449 494 6.732181 ATAATCACGCGCACATTAAAAATC 57.268 33.333 5.73 0.00 0.00 2.17
450 495 6.507771 GCAATAATCACGCGCACATTAAAAAT 60.508 34.615 5.73 0.00 0.00 1.82
451 496 5.220117 GCAATAATCACGCGCACATTAAAAA 60.220 36.000 5.73 0.00 0.00 1.94
452 497 4.264145 GCAATAATCACGCGCACATTAAAA 59.736 37.500 5.73 0.00 0.00 1.52
453 498 3.788694 GCAATAATCACGCGCACATTAAA 59.211 39.130 5.73 0.00 0.00 1.52
454 499 3.358775 GCAATAATCACGCGCACATTAA 58.641 40.909 5.73 0.00 0.00 1.40
455 500 2.598673 CGCAATAATCACGCGCACATTA 60.599 45.455 5.73 6.74 42.79 1.90
456 501 1.826327 GCAATAATCACGCGCACATT 58.174 45.000 5.73 4.36 0.00 2.71
457 502 0.316114 CGCAATAATCACGCGCACAT 60.316 50.000 5.73 0.00 42.79 3.21
458 503 1.060151 CGCAATAATCACGCGCACA 59.940 52.632 5.73 0.00 42.79 4.57
459 504 3.874394 CGCAATAATCACGCGCAC 58.126 55.556 5.73 0.00 42.79 5.34
464 509 1.368019 CAGGCGCGCAATAATCACG 60.368 57.895 34.42 5.64 0.00 4.35
465 510 1.655350 GCAGGCGCGCAATAATCAC 60.655 57.895 34.42 12.85 0.00 3.06
466 511 1.819208 AGCAGGCGCGCAATAATCA 60.819 52.632 34.42 0.00 45.49 2.57
467 512 1.369689 CAGCAGGCGCGCAATAATC 60.370 57.895 34.42 14.51 45.49 1.75
468 513 2.717485 CAGCAGGCGCGCAATAAT 59.283 55.556 34.42 11.54 45.49 1.28
469 514 3.507924 CCAGCAGGCGCGCAATAA 61.508 61.111 34.42 0.00 45.49 1.40
470 515 4.465480 TCCAGCAGGCGCGCAATA 62.465 61.111 34.42 7.44 45.49 1.90
480 525 4.711949 AACCGGCAGCTCCAGCAG 62.712 66.667 0.00 0.00 45.16 4.24
481 526 4.704833 GAACCGGCAGCTCCAGCA 62.705 66.667 0.00 0.00 45.16 4.41
482 527 4.704833 TGAACCGGCAGCTCCAGC 62.705 66.667 0.00 0.00 42.49 4.85
483 528 2.435586 CTGAACCGGCAGCTCCAG 60.436 66.667 0.00 0.00 34.01 3.86
484 529 3.240134 GACTGAACCGGCAGCTCCA 62.240 63.158 0.00 0.00 39.51 3.86
485 530 2.435059 GACTGAACCGGCAGCTCC 60.435 66.667 0.00 0.00 39.51 4.70
486 531 2.811317 CGACTGAACCGGCAGCTC 60.811 66.667 0.00 1.84 39.51 4.09
487 532 4.379243 CCGACTGAACCGGCAGCT 62.379 66.667 0.00 0.00 40.54 4.24
494 539 2.775032 TTAGCGTGCCCGACTGAACC 62.775 60.000 0.00 0.00 35.63 3.62
495 540 0.947180 TTTAGCGTGCCCGACTGAAC 60.947 55.000 0.00 0.00 35.63 3.18
496 541 0.249953 TTTTAGCGTGCCCGACTGAA 60.250 50.000 0.00 0.00 35.63 3.02
497 542 0.249953 TTTTTAGCGTGCCCGACTGA 60.250 50.000 0.00 0.00 35.63 3.41
498 543 0.165944 CTTTTTAGCGTGCCCGACTG 59.834 55.000 0.00 0.00 35.63 3.51
499 544 1.574702 GCTTTTTAGCGTGCCCGACT 61.575 55.000 0.00 0.00 35.63 4.18
500 545 1.154282 GCTTTTTAGCGTGCCCGAC 60.154 57.895 0.00 0.00 35.63 4.79
501 546 2.329614 GGCTTTTTAGCGTGCCCGA 61.330 57.895 0.00 0.00 39.49 5.14
502 547 2.178273 GGCTTTTTAGCGTGCCCG 59.822 61.111 0.00 0.00 39.49 6.13
503 548 2.137425 AACGGCTTTTTAGCGTGCCC 62.137 55.000 0.00 0.00 42.15 5.36
504 549 0.318360 AAACGGCTTTTTAGCGTGCC 60.318 50.000 0.00 0.00 41.76 5.01
505 550 1.483316 AAAACGGCTTTTTAGCGTGC 58.517 45.000 0.00 0.00 35.52 5.34
506 551 3.109619 TGAAAAACGGCTTTTTAGCGTG 58.890 40.909 1.87 0.00 39.28 5.34
507 552 3.368495 CTGAAAAACGGCTTTTTAGCGT 58.632 40.909 1.87 0.00 39.28 5.07
508 553 2.724174 CCTGAAAAACGGCTTTTTAGCG 59.276 45.455 1.87 0.00 39.28 4.26
509 554 2.475111 GCCTGAAAAACGGCTTTTTAGC 59.525 45.455 1.87 5.59 39.28 3.09
510 555 2.724174 CGCCTGAAAAACGGCTTTTTAG 59.276 45.455 1.87 8.78 44.11 1.85
511 556 2.733517 CGCCTGAAAAACGGCTTTTTA 58.266 42.857 1.87 0.00 44.11 1.52
512 557 1.566404 CGCCTGAAAAACGGCTTTTT 58.434 45.000 0.00 0.00 44.11 1.94
513 558 0.874175 GCGCCTGAAAAACGGCTTTT 60.874 50.000 0.00 0.00 44.11 2.27
514 559 1.299850 GCGCCTGAAAAACGGCTTT 60.300 52.632 0.00 0.00 44.11 3.51
515 560 2.335011 GCGCCTGAAAAACGGCTT 59.665 55.556 0.00 0.00 44.11 4.35
516 561 4.025401 CGCGCCTGAAAAACGGCT 62.025 61.111 0.00 0.00 44.11 5.52
518 563 3.815569 TTGCGCGCCTGAAAAACGG 62.816 57.895 30.77 0.00 0.00 4.44
519 564 2.352915 TTGCGCGCCTGAAAAACG 60.353 55.556 30.77 0.00 0.00 3.60
520 565 0.869880 AAGTTGCGCGCCTGAAAAAC 60.870 50.000 30.77 23.75 0.00 2.43
521 566 0.663688 TAAGTTGCGCGCCTGAAAAA 59.336 45.000 30.77 12.43 0.00 1.94
522 567 0.878416 ATAAGTTGCGCGCCTGAAAA 59.122 45.000 30.77 13.28 0.00 2.29
523 568 0.878416 AATAAGTTGCGCGCCTGAAA 59.122 45.000 30.77 13.72 0.00 2.69
524 569 0.878416 AAATAAGTTGCGCGCCTGAA 59.122 45.000 30.77 14.15 0.00 3.02
525 570 1.663643 CTAAATAAGTTGCGCGCCTGA 59.336 47.619 30.77 13.23 0.00 3.86
526 571 1.856014 GCTAAATAAGTTGCGCGCCTG 60.856 52.381 30.77 7.17 0.00 4.85
527 572 0.377203 GCTAAATAAGTTGCGCGCCT 59.623 50.000 30.77 17.11 0.00 5.52
528 573 0.923911 CGCTAAATAAGTTGCGCGCC 60.924 55.000 30.77 14.69 41.85 6.53
529 574 2.470013 CGCTAAATAAGTTGCGCGC 58.530 52.632 27.26 27.26 41.85 6.86
533 578 4.037690 CCAAGATGCGCTAAATAAGTTGC 58.962 43.478 9.73 0.00 0.00 4.17
534 579 5.294306 TCTCCAAGATGCGCTAAATAAGTTG 59.706 40.000 9.73 1.17 0.00 3.16
535 580 5.428253 TCTCCAAGATGCGCTAAATAAGTT 58.572 37.500 9.73 0.00 0.00 2.66
536 581 5.023533 TCTCCAAGATGCGCTAAATAAGT 57.976 39.130 9.73 0.00 0.00 2.24
537 582 5.924786 CATCTCCAAGATGCGCTAAATAAG 58.075 41.667 9.73 0.00 44.69 1.73
538 583 5.929697 CATCTCCAAGATGCGCTAAATAA 57.070 39.130 9.73 0.00 44.69 1.40
557 602 7.516943 GCCGTCTTGTTATTACTTAAGAGCATC 60.517 40.741 10.09 0.00 30.51 3.91
558 603 6.258068 GCCGTCTTGTTATTACTTAAGAGCAT 59.742 38.462 10.09 0.52 30.51 3.79
559 604 5.579511 GCCGTCTTGTTATTACTTAAGAGCA 59.420 40.000 10.09 0.00 30.51 4.26
560 605 5.811100 AGCCGTCTTGTTATTACTTAAGAGC 59.189 40.000 10.09 0.00 30.51 4.09
561 606 7.201530 CCAAGCCGTCTTGTTATTACTTAAGAG 60.202 40.741 10.09 0.00 46.33 2.85
562 607 6.592607 CCAAGCCGTCTTGTTATTACTTAAGA 59.407 38.462 10.09 0.00 46.33 2.10
563 608 6.370718 ACCAAGCCGTCTTGTTATTACTTAAG 59.629 38.462 5.37 0.00 46.33 1.85
564 609 6.148150 CACCAAGCCGTCTTGTTATTACTTAA 59.852 38.462 5.37 0.00 46.33 1.85
565 610 5.640357 CACCAAGCCGTCTTGTTATTACTTA 59.360 40.000 5.37 0.00 46.33 2.24
566 611 4.454504 CACCAAGCCGTCTTGTTATTACTT 59.545 41.667 5.37 0.00 46.33 2.24
567 612 4.000988 CACCAAGCCGTCTTGTTATTACT 58.999 43.478 5.37 0.00 46.33 2.24
568 613 3.126343 CCACCAAGCCGTCTTGTTATTAC 59.874 47.826 5.37 0.00 46.33 1.89
650 696 8.514504 AGTTCTCCTGATTGGGGATTTAATATT 58.485 33.333 0.00 0.00 46.45 1.28
656 702 3.309410 CCAGTTCTCCTGATTGGGGATTT 60.309 47.826 0.00 0.00 46.45 2.17
704 750 2.157085 GCAAAAGGTACGGAGAAGTTCG 59.843 50.000 0.00 0.00 0.00 3.95
930 980 5.454966 TCAGCCACTGTACTGGATTAGATA 58.545 41.667 5.35 0.00 34.57 1.98
1363 1467 1.001158 GGTAGTAGAGGTCGATGCAGC 60.001 57.143 0.00 0.00 0.00 5.25
1364 1468 2.292016 CTGGTAGTAGAGGTCGATGCAG 59.708 54.545 0.00 0.00 0.00 4.41
1438 1542 1.539827 CAACGGGATTGGGTTGAACTC 59.460 52.381 0.00 0.00 44.80 3.01
1495 1789 0.589708 TATACGGATGAGCGTCACCG 59.410 55.000 17.88 17.88 42.50 4.94
1496 1790 1.607628 AGTATACGGATGAGCGTCACC 59.392 52.381 0.00 0.00 0.00 4.02
1497 1791 2.350580 GGAGTATACGGATGAGCGTCAC 60.351 54.545 0.00 0.00 0.00 3.67
1501 1795 1.469308 GAGGGAGTATACGGATGAGCG 59.531 57.143 0.00 0.00 0.00 5.03
1502 1796 1.819903 GGAGGGAGTATACGGATGAGC 59.180 57.143 0.00 0.00 0.00 4.26
1504 1798 2.041350 GAGGGAGGGAGTATACGGATGA 59.959 54.545 0.00 0.00 0.00 2.92
1506 1800 1.358445 GGAGGGAGGGAGTATACGGAT 59.642 57.143 0.00 0.00 0.00 4.18
1507 1801 0.776176 GGAGGGAGGGAGTATACGGA 59.224 60.000 0.00 0.00 0.00 4.69
1509 1803 0.110104 ACGGAGGGAGGGAGTATACG 59.890 60.000 0.00 0.00 0.00 3.06
1512 1806 1.542679 GGACGGAGGGAGGGAGTAT 59.457 63.158 0.00 0.00 0.00 2.12
1513 1807 3.013631 GGACGGAGGGAGGGAGTA 58.986 66.667 0.00 0.00 0.00 2.59
1515 1809 3.438615 ATCGGACGGAGGGAGGGAG 62.439 68.421 0.00 0.00 0.00 4.30
1516 1810 3.426836 ATCGGACGGAGGGAGGGA 61.427 66.667 0.00 0.00 0.00 4.20
1517 1811 3.227276 CATCGGACGGAGGGAGGG 61.227 72.222 0.00 0.00 0.00 4.30
1518 1812 0.251209 TATCATCGGACGGAGGGAGG 60.251 60.000 0.00 0.00 0.00 4.30
1519 1813 1.840737 ATATCATCGGACGGAGGGAG 58.159 55.000 0.00 0.00 0.00 4.30
1520 1814 3.009805 TCTTATATCATCGGACGGAGGGA 59.990 47.826 0.00 0.00 0.00 4.20
1521 1815 3.353557 TCTTATATCATCGGACGGAGGG 58.646 50.000 0.00 0.00 0.00 4.30
1522 1816 3.181495 GCTCTTATATCATCGGACGGAGG 60.181 52.174 0.00 0.00 0.00 4.30
1523 1817 3.486043 CGCTCTTATATCATCGGACGGAG 60.486 52.174 0.00 0.00 0.00 4.63
1526 1820 3.473093 ACGCTCTTATATCATCGGACG 57.527 47.619 0.00 0.00 0.00 4.79
1527 1821 4.547532 ACAACGCTCTTATATCATCGGAC 58.452 43.478 0.00 0.00 0.00 4.79
1528 1822 4.612939 CGACAACGCTCTTATATCATCGGA 60.613 45.833 0.00 0.00 0.00 4.55
1529 1823 3.604198 CGACAACGCTCTTATATCATCGG 59.396 47.826 0.00 0.00 0.00 4.18
1530 1824 4.790854 CGACAACGCTCTTATATCATCG 57.209 45.455 0.00 0.00 0.00 3.84
1545 1952 9.411801 TCTCATCATAATATAAAGAGCGACAAC 57.588 33.333 0.00 0.00 0.00 3.32
1547 1954 7.750903 CGTCTCATCATAATATAAAGAGCGACA 59.249 37.037 0.00 0.00 0.00 4.35
1551 1958 7.704472 CCTCCGTCTCATCATAATATAAAGAGC 59.296 40.741 0.00 0.00 0.00 4.09
1552 1959 8.194104 CCCTCCGTCTCATCATAATATAAAGAG 58.806 40.741 0.00 0.00 0.00 2.85
1565 2063 2.351706 AGTACTCCCTCCGTCTCATC 57.648 55.000 0.00 0.00 0.00 2.92
1569 2067 3.087781 GTTTGTAGTACTCCCTCCGTCT 58.912 50.000 0.00 0.00 0.00 4.18
1570 2068 2.821969 TGTTTGTAGTACTCCCTCCGTC 59.178 50.000 0.00 0.00 0.00 4.79
1597 2095 6.149633 GCCAAACGTGTAAATTTCTCTCATT 58.850 36.000 0.00 0.00 0.00 2.57
1648 2147 5.592587 TTTATCTTCCCCTCTTCAACCAA 57.407 39.130 0.00 0.00 0.00 3.67
1671 2280 1.747206 GCTTCGGACAGCCCAATGTAT 60.747 52.381 2.10 0.00 33.21 2.29
1708 2317 4.961511 AACCGCGTGCGCTCTTCA 62.962 61.111 9.73 0.00 39.32 3.02
1773 2385 2.623889 AGGGATTATGTCTTCCTCGACG 59.376 50.000 0.00 0.00 36.71 5.12
1849 2882 6.987386 ACAAAATTCATACGATTGGGAAACA 58.013 32.000 0.00 0.00 0.00 2.83
2026 3063 6.934645 AGAAGGATTTGTCAAATACACGAGAA 59.065 34.615 20.37 0.00 38.00 2.87
2324 4022 1.300931 GTGAGCTTCACGGACAGCA 60.301 57.895 4.99 0.00 37.67 4.41
2341 4039 1.152440 CGGCCATCTCCTCTAGGGT 60.152 63.158 2.24 0.00 36.25 4.34
2345 4043 0.105964 AAGCTCGGCCATCTCCTCTA 60.106 55.000 2.24 0.00 0.00 2.43
2409 4114 5.947443 GAATCCTTCCAAGTGTTCATGAAG 58.053 41.667 8.80 0.00 33.80 3.02
2433 4138 0.839946 ATGAAATGGGAGGGGTCTCG 59.160 55.000 0.00 0.00 40.85 4.04
2448 4153 0.909610 ACTCGGCCTTCCAGGATGAA 60.910 55.000 0.00 0.00 39.69 2.57
2498 4203 6.791303 ACGAGAAATTAAGAAACAAGCAACA 58.209 32.000 0.00 0.00 0.00 3.33
2527 4234 2.163211 CACACACACACACACATTCCAA 59.837 45.455 0.00 0.00 0.00 3.53
2844 4563 3.722908 TTTCCCGGGATACAACATGAA 57.277 42.857 27.48 9.47 39.74 2.57
2864 4583 5.410924 CATTCATACATCGGATCACGGTAT 58.589 41.667 0.00 0.00 44.45 2.73
2868 4587 3.675225 GTCCATTCATACATCGGATCACG 59.325 47.826 0.00 0.00 46.11 4.35
2927 4646 4.082354 ACAGATGGACGTAACTTACTCACC 60.082 45.833 0.00 0.00 0.00 4.02
3013 4736 1.005097 GGTGGTTCGGATAAAGGGGTT 59.995 52.381 0.00 0.00 0.00 4.11
3014 4737 0.622136 GGTGGTTCGGATAAAGGGGT 59.378 55.000 0.00 0.00 0.00 4.95
3067 4790 6.119536 AGTGGATGAGAGACTACAAGTAGAG 58.880 44.000 13.79 0.00 36.97 2.43
3071 4794 5.047660 GTGAAGTGGATGAGAGACTACAAGT 60.048 44.000 0.00 0.00 0.00 3.16
3170 4894 1.344114 GGTGTGATGTTGGGCATTGTT 59.656 47.619 0.00 0.00 38.06 2.83
3314 5049 1.542987 CCCGACGTTTTCCTGGGTTTA 60.543 52.381 0.00 0.00 35.05 2.01
3315 5050 0.820482 CCCGACGTTTTCCTGGGTTT 60.820 55.000 0.00 0.00 35.05 3.27
3316 5051 1.228033 CCCGACGTTTTCCTGGGTT 60.228 57.895 0.00 0.00 35.05 4.11
3317 5052 2.428622 CCCGACGTTTTCCTGGGT 59.571 61.111 0.00 0.00 35.05 4.51
3318 5053 3.053896 GCCCGACGTTTTCCTGGG 61.054 66.667 0.00 0.00 43.02 4.45
3319 5054 3.053896 GGCCCGACGTTTTCCTGG 61.054 66.667 0.00 0.00 0.00 4.45
3320 5055 3.419759 CGGCCCGACGTTTTCCTG 61.420 66.667 0.00 0.00 0.00 3.86
3337 5072 3.284336 CTTTTACAAGCCCGGCCC 58.716 61.111 5.55 0.00 0.00 5.80
3346 5081 5.710099 AGAAATGAAGATCGGGCTTTTACAA 59.290 36.000 0.00 0.00 0.00 2.41
3347 5082 5.253330 AGAAATGAAGATCGGGCTTTTACA 58.747 37.500 0.00 0.00 0.00 2.41
3348 5083 5.354234 TGAGAAATGAAGATCGGGCTTTTAC 59.646 40.000 0.00 0.00 0.00 2.01
3350 5085 4.335416 TGAGAAATGAAGATCGGGCTTTT 58.665 39.130 0.00 0.00 0.00 2.27
3351 5086 3.955471 TGAGAAATGAAGATCGGGCTTT 58.045 40.909 0.00 0.00 0.00 3.51
3352 5087 3.634397 TGAGAAATGAAGATCGGGCTT 57.366 42.857 0.00 0.00 0.00 4.35
3353 5088 3.539604 CTTGAGAAATGAAGATCGGGCT 58.460 45.455 0.00 0.00 0.00 5.19
3354 5089 2.032675 GCTTGAGAAATGAAGATCGGGC 59.967 50.000 0.00 0.00 0.00 6.13
3356 5091 2.615912 GGGCTTGAGAAATGAAGATCGG 59.384 50.000 0.00 0.00 0.00 4.18
3359 5094 3.539604 CTCGGGCTTGAGAAATGAAGAT 58.460 45.455 1.75 0.00 38.28 2.40
3360 5095 2.936993 GCTCGGGCTTGAGAAATGAAGA 60.937 50.000 0.00 0.00 38.28 2.87
3362 5097 1.453155 GCTCGGGCTTGAGAAATGAA 58.547 50.000 0.00 0.00 38.28 2.57
3363 5098 0.392998 GGCTCGGGCTTGAGAAATGA 60.393 55.000 7.48 0.00 38.28 2.57
3364 5099 0.393537 AGGCTCGGGCTTGAGAAATG 60.394 55.000 7.48 0.00 38.28 2.32
3366 5101 1.003355 CAGGCTCGGGCTTGAGAAA 60.003 57.895 15.39 0.00 46.58 2.52
3367 5102 2.665000 CAGGCTCGGGCTTGAGAA 59.335 61.111 15.39 0.00 46.58 2.87
3368 5103 3.393970 CCAGGCTCGGGCTTGAGA 61.394 66.667 22.62 0.00 46.58 3.27
3385 5120 2.142357 GAGTGTTTTGGGCTTCGGGC 62.142 60.000 0.00 0.00 40.90 6.13
3386 5121 1.524008 GGAGTGTTTTGGGCTTCGGG 61.524 60.000 0.00 0.00 0.00 5.14
3387 5122 1.524008 GGGAGTGTTTTGGGCTTCGG 61.524 60.000 0.00 0.00 0.00 4.30
3388 5123 0.537371 AGGGAGTGTTTTGGGCTTCG 60.537 55.000 0.00 0.00 0.00 3.79
3389 5124 0.961753 CAGGGAGTGTTTTGGGCTTC 59.038 55.000 0.00 0.00 0.00 3.86
3390 5125 0.261696 ACAGGGAGTGTTTTGGGCTT 59.738 50.000 0.00 0.00 34.94 4.35
3391 5126 1.930520 ACAGGGAGTGTTTTGGGCT 59.069 52.632 0.00 0.00 34.94 5.19
3392 5127 4.599036 ACAGGGAGTGTTTTGGGC 57.401 55.556 0.00 0.00 34.94 5.36
3399 5134 1.692411 GGCTTGAAAACAGGGAGTGT 58.308 50.000 0.00 0.00 43.24 3.55
3400 5135 0.961753 GGGCTTGAAAACAGGGAGTG 59.038 55.000 0.00 0.00 0.00 3.51
3401 5136 0.537371 CGGGCTTGAAAACAGGGAGT 60.537 55.000 0.00 0.00 0.00 3.85
3404 5139 1.244019 CCTCGGGCTTGAAAACAGGG 61.244 60.000 0.00 0.00 0.00 4.45
3405 5140 1.866853 GCCTCGGGCTTGAAAACAGG 61.867 60.000 7.58 0.00 46.69 4.00
3406 5141 1.581447 GCCTCGGGCTTGAAAACAG 59.419 57.895 7.58 0.00 46.69 3.16
3417 5152 2.361230 GACCTTTTGGGCCTCGGG 60.361 66.667 4.53 4.45 43.63 5.14
3431 5166 1.101635 GGCTTGATTTAGGGCCGACC 61.102 60.000 0.00 0.00 40.67 4.79
3432 5167 1.101635 GGGCTTGATTTAGGGCCGAC 61.102 60.000 0.00 0.00 44.91 4.79
3433 5168 1.226262 GGGCTTGATTTAGGGCCGA 59.774 57.895 0.00 0.00 44.91 5.54
3434 5169 3.841870 GGGCTTGATTTAGGGCCG 58.158 61.111 0.00 0.00 44.91 6.13
3435 5170 0.395173 TTCGGGCTTGATTTAGGGCC 60.395 55.000 0.00 0.00 46.30 5.80
3436 5171 1.025041 CTTCGGGCTTGATTTAGGGC 58.975 55.000 0.00 0.00 0.00 5.19
3437 5172 1.025041 GCTTCGGGCTTGATTTAGGG 58.975 55.000 0.00 0.00 38.06 3.53
3438 5173 1.025041 GGCTTCGGGCTTGATTTAGG 58.975 55.000 1.83 0.00 41.46 2.69
3439 5174 1.025041 GGGCTTCGGGCTTGATTTAG 58.975 55.000 1.83 0.00 41.46 1.85
3440 5175 0.746563 CGGGCTTCGGGCTTGATTTA 60.747 55.000 1.83 0.00 41.46 1.40
3441 5176 2.046285 CGGGCTTCGGGCTTGATTT 61.046 57.895 1.83 0.00 41.46 2.17
3442 5177 2.438434 CGGGCTTCGGGCTTGATT 60.438 61.111 1.83 0.00 41.46 2.57
3451 5186 2.890474 CATTCGGACCGGGCTTCG 60.890 66.667 15.25 2.51 38.88 3.79
3452 5187 3.202706 GCATTCGGACCGGGCTTC 61.203 66.667 15.25 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.