Multiple sequence alignment - TraesCS5B01G331400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G331400 chr5B 100.000 3501 0 0 1729 5229 515583202 515586702 0.000000e+00 6466.0
1 TraesCS5B01G331400 chr5B 100.000 1381 0 0 1 1381 515581474 515582854 0.000000e+00 2551.0
2 TraesCS5B01G331400 chr5D 92.483 1490 83 19 3287 4759 426012862 426014339 0.000000e+00 2104.0
3 TraesCS5B01G331400 chr5D 91.782 1229 49 13 196 1381 426009920 426011139 0.000000e+00 1663.0
4 TraesCS5B01G331400 chr5D 92.982 741 27 12 1729 2446 426011255 426011993 0.000000e+00 1057.0
5 TraesCS5B01G331400 chr5D 93.003 586 32 5 2647 3231 426012299 426012876 0.000000e+00 846.0
6 TraesCS5B01G331400 chr5D 89.513 677 34 9 181 828 426009621 426008953 0.000000e+00 822.0
7 TraesCS5B01G331400 chr5D 96.907 97 2 1 5134 5229 426014520 426014616 1.510000e-35 161.0
8 TraesCS5B01G331400 chr5A 89.545 1320 80 27 92 1364 540288639 540289947 0.000000e+00 1620.0
9 TraesCS5B01G331400 chr5A 89.062 1088 82 22 3287 4360 540292017 540293081 0.000000e+00 1315.0
10 TraesCS5B01G331400 chr5A 87.709 1074 85 23 2184 3231 540290979 540292031 0.000000e+00 1208.0
11 TraesCS5B01G331400 chr5A 92.857 742 28 10 1729 2446 540290245 540290985 0.000000e+00 1053.0
12 TraesCS5B01G331400 chr5A 86.742 792 60 18 5 757 540287854 540288639 0.000000e+00 839.0
13 TraesCS5B01G331400 chr5A 86.735 294 38 1 65 358 556690654 556690362 5.050000e-85 326.0
14 TraesCS5B01G331400 chr2B 92.159 1135 81 7 3287 4419 798307701 798308829 0.000000e+00 1596.0
15 TraesCS5B01G331400 chr2B 88.329 1071 80 27 2184 3231 798306667 798307715 0.000000e+00 1243.0
16 TraesCS5B01G331400 chr2B 81.024 332 47 9 4807 5133 530793852 530794172 3.130000e-62 250.0
17 TraesCS5B01G331400 chr2B 81.024 332 47 9 4807 5133 530839745 530840065 3.130000e-62 250.0
18 TraesCS5B01G331400 chr1D 84.539 401 54 8 48 444 99544768 99545164 1.770000e-104 390.0
19 TraesCS5B01G331400 chr6D 80.679 471 83 8 48 516 346270506 346270970 4.980000e-95 359.0
20 TraesCS5B01G331400 chr7A 87.138 311 39 1 48 358 550049442 550049751 8.330000e-93 351.0
21 TraesCS5B01G331400 chr7A 75.911 494 75 21 48 518 232755182 232755654 4.100000e-51 213.0
22 TraesCS5B01G331400 chr7A 100.000 79 0 0 735 813 80581358 80581436 4.220000e-31 147.0
23 TraesCS5B01G331400 chr7A 96.591 88 1 2 737 823 78415926 78415840 1.520000e-30 145.0
24 TraesCS5B01G331400 chr6A 86.174 311 39 4 65 373 485159248 485159556 3.020000e-87 333.0
25 TraesCS5B01G331400 chr6A 87.755 49 4 2 3758 3806 448025007 448024961 7.320000e-04 56.5
26 TraesCS5B01G331400 chr3D 81.446 415 67 9 48 460 467479812 467479406 1.090000e-86 331.0
27 TraesCS5B01G331400 chr3D 86.111 72 9 1 3732 3803 571178383 571178313 5.620000e-10 76.8
28 TraesCS5B01G331400 chr7D 84.570 337 44 7 48 382 483875123 483875453 1.400000e-85 327.0
29 TraesCS5B01G331400 chr7D 96.629 89 1 2 735 823 74399234 74399148 4.220000e-31 147.0
30 TraesCS5B01G331400 chr7D 98.780 82 0 1 735 815 76611373 76611454 1.520000e-30 145.0
31 TraesCS5B01G331400 chrUn 81.024 332 47 9 4807 5133 333410970 333411290 3.130000e-62 250.0
32 TraesCS5B01G331400 chrUn 81.024 332 47 9 4807 5133 373700818 373700498 3.130000e-62 250.0
33 TraesCS5B01G331400 chrUn 81.024 332 47 9 4807 5133 373702684 373702364 3.130000e-62 250.0
34 TraesCS5B01G331400 chr7B 97.674 86 1 1 735 819 17534345 17534260 4.220000e-31 147.0
35 TraesCS5B01G331400 chr7B 98.795 83 0 1 733 814 23097467 23097549 4.220000e-31 147.0
36 TraesCS5B01G331400 chr3B 73.474 475 90 23 52 515 421919596 421919147 4.220000e-31 147.0
37 TraesCS5B01G331400 chr2D 74.231 260 50 8 48 306 491945546 491945303 5.580000e-15 93.5
38 TraesCS5B01G331400 chr6B 93.750 48 3 0 468 515 595230354 595230307 7.260000e-09 73.1
39 TraesCS5B01G331400 chr4D 93.617 47 3 0 467 513 63956907 63956861 2.610000e-08 71.3
40 TraesCS5B01G331400 chr1A 95.349 43 2 0 473 515 261250542 261250500 9.400000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G331400 chr5B 515581474 515586702 5228 False 4508.5 6466 100.0000 1 5229 2 chr5B.!!$F1 5228
1 TraesCS5B01G331400 chr5D 426009920 426014616 4696 False 1166.2 2104 93.4314 196 5229 5 chr5D.!!$F1 5033
2 TraesCS5B01G331400 chr5D 426008953 426009621 668 True 822.0 822 89.5130 181 828 1 chr5D.!!$R1 647
3 TraesCS5B01G331400 chr5A 540287854 540293081 5227 False 1207.0 1620 89.1830 5 4360 5 chr5A.!!$F1 4355
4 TraesCS5B01G331400 chr2B 798306667 798308829 2162 False 1419.5 1596 90.2440 2184 4419 2 chr2B.!!$F3 2235
5 TraesCS5B01G331400 chrUn 373700498 373702684 2186 True 250.0 250 81.0240 4807 5133 2 chrUn.!!$R1 326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 574 0.250467 AGGTGAGCAACTTGTCGCAT 60.250 50.0 0.0 0.0 0.00 4.73 F
2076 2847 0.106819 GCTCAGTGGGGCAGATGATT 60.107 55.0 0.0 0.0 0.00 2.57 F
2365 3434 0.107410 TTTGGACACACGTTGCCTCT 60.107 50.0 0.0 0.0 0.00 3.69 F
3049 4119 0.464036 TCCCGAATGGTTCCTCATCG 59.536 55.0 0.0 0.0 34.77 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2857 0.107456 ATGCTGAAATCCGCCGAGAT 59.893 50.000 0.0 0.0 0.00 2.75 R
3521 4596 0.330604 AGCATCACAAGTGCCTCCAT 59.669 50.000 0.0 0.0 43.50 3.41 R
3829 4905 1.672030 CCATTGCGAGGTGACAGCA 60.672 57.895 7.5 0.0 42.93 4.41 R
4441 5525 0.112412 AGAAAACATTCGCCCCTGGT 59.888 50.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.885644 CGACGACCATGAAGCCGG 60.886 66.667 0.00 0.00 0.00 6.13
164 165 2.892640 CGTTGATGGAGAGGCGGA 59.107 61.111 0.00 0.00 0.00 5.54
178 179 2.262915 CGGACAGCTTCGCTTCCT 59.737 61.111 12.08 0.00 36.40 3.36
179 180 1.511305 CGGACAGCTTCGCTTCCTA 59.489 57.895 12.08 0.00 36.40 2.94
242 243 0.602905 CGAGGCGGAGTTGGAAAAGT 60.603 55.000 0.00 0.00 0.00 2.66
279 280 2.120909 GGTTCATGGCCGGACATGG 61.121 63.158 42.58 27.26 46.33 3.66
356 377 8.499403 TGATGTAAATGTAATGAAATCCGTCA 57.501 30.769 0.00 0.00 0.00 4.35
357 378 9.119418 TGATGTAAATGTAATGAAATCCGTCAT 57.881 29.630 0.00 0.00 40.01 3.06
375 396 8.499403 TCCGTCATTGTTTATATCAATTCACA 57.501 30.769 2.28 0.00 33.92 3.58
377 398 8.180920 CCGTCATTGTTTATATCAATTCACACA 58.819 33.333 2.28 0.00 33.92 3.72
401 422 1.134759 TGATCGAATTTCGGCCGGTTA 60.135 47.619 27.83 11.47 40.88 2.85
533 574 0.250467 AGGTGAGCAACTTGTCGCAT 60.250 50.000 0.00 0.00 0.00 4.73
548 596 4.055360 TGTCGCATCGAGAAAGAGAAAAA 58.945 39.130 0.00 0.00 36.23 1.94
688 739 7.285788 CAAATGCTTTGCTTCTTGTATTCAAC 58.714 34.615 0.00 0.00 33.36 3.18
690 741 4.584325 TGCTTTGCTTCTTGTATTCAACCT 59.416 37.500 0.00 0.00 0.00 3.50
691 742 4.919754 GCTTTGCTTCTTGTATTCAACCTG 59.080 41.667 0.00 0.00 0.00 4.00
692 743 5.278463 GCTTTGCTTCTTGTATTCAACCTGA 60.278 40.000 0.00 0.00 0.00 3.86
819 1580 1.644786 GACCAAACGCCCTTCGATGG 61.645 60.000 10.36 10.36 46.35 3.51
834 1595 4.635769 TGGCAACCTCGGCATAAG 57.364 55.556 0.00 0.00 36.38 1.73
838 1599 2.024414 GGCAACCTCGGCATAAGAAAT 58.976 47.619 0.00 0.00 0.00 2.17
839 1600 3.211045 GGCAACCTCGGCATAAGAAATA 58.789 45.455 0.00 0.00 0.00 1.40
848 1609 9.959721 ACCTCGGCATAAGAAATATTATATTGT 57.040 29.630 0.00 0.00 0.00 2.71
853 1614 9.988350 GGCATAAGAAATATTATATTGTGGACG 57.012 33.333 0.00 0.00 0.00 4.79
881 1642 2.102578 CCATTCGCTTTTCCCTCCAAT 58.897 47.619 0.00 0.00 0.00 3.16
979 1750 3.573967 ACACAGATTCCAATTGTTCCACC 59.426 43.478 4.43 0.00 0.00 4.61
1284 2055 1.079127 CAGCCAAACCCTCGTCGAT 60.079 57.895 0.00 0.00 0.00 3.59
1959 2730 7.176515 TGCTTGCTCACATTTTTCTTTCCTATA 59.823 33.333 0.00 0.00 0.00 1.31
2076 2847 0.106819 GCTCAGTGGGGCAGATGATT 60.107 55.000 0.00 0.00 0.00 2.57
2085 2856 2.108952 GGGGCAGATGATTAAGATGGGT 59.891 50.000 0.00 0.00 0.00 4.51
2086 2857 3.330701 GGGGCAGATGATTAAGATGGGTA 59.669 47.826 0.00 0.00 0.00 3.69
2208 3261 4.098416 GTCTCTGAAAAACTGTTGCACAC 58.902 43.478 0.00 0.00 0.00 3.82
2220 3273 2.293122 TGTTGCACACTGCCAATAAGAC 59.707 45.455 0.00 0.00 44.23 3.01
2228 3281 2.025887 ACTGCCAATAAGACCCAGGAAG 60.026 50.000 0.00 0.00 0.00 3.46
2238 3291 4.828072 AGACCCAGGAAGATGTAGAAAC 57.172 45.455 0.00 0.00 0.00 2.78
2239 3292 4.168101 AGACCCAGGAAGATGTAGAAACA 58.832 43.478 0.00 0.00 40.69 2.83
2254 3314 8.594881 ATGTAGAAACAAGAAACTACTGACTG 57.405 34.615 0.00 0.00 39.58 3.51
2261 3321 6.281405 ACAAGAAACTACTGACTGTACTTGG 58.719 40.000 17.31 2.16 36.28 3.61
2267 3327 4.894114 ACTACTGACTGTACTTGGACACTT 59.106 41.667 0.00 0.00 0.00 3.16
2275 3335 6.465084 ACTGTACTTGGACACTTAGGAAATC 58.535 40.000 0.00 0.00 0.00 2.17
2311 3371 7.608376 TCTCCTCTGAGATATTAACACCTATCG 59.392 40.741 6.17 0.00 42.73 2.92
2318 3378 2.973694 TTAACACCTATCGGGAGTGC 57.026 50.000 0.00 0.00 38.86 4.40
2319 3379 2.154567 TAACACCTATCGGGAGTGCT 57.845 50.000 0.00 0.00 38.86 4.40
2321 3381 2.154567 ACACCTATCGGGAGTGCTAA 57.845 50.000 0.00 0.00 37.51 3.09
2322 3382 2.032620 ACACCTATCGGGAGTGCTAAG 58.967 52.381 0.00 0.00 37.51 2.18
2323 3383 2.307768 CACCTATCGGGAGTGCTAAGA 58.692 52.381 0.00 0.00 38.76 2.10
2324 3384 2.034812 CACCTATCGGGAGTGCTAAGAC 59.965 54.545 0.00 0.00 38.76 3.01
2327 3387 2.145397 ATCGGGAGTGCTAAGACTGA 57.855 50.000 0.00 0.00 0.00 3.41
2332 3400 4.003648 CGGGAGTGCTAAGACTGAAAAAT 58.996 43.478 0.00 0.00 0.00 1.82
2365 3434 0.107410 TTTGGACACACGTTGCCTCT 60.107 50.000 0.00 0.00 0.00 3.69
2368 3437 1.346395 TGGACACACGTTGCCTCTTAT 59.654 47.619 0.00 0.00 0.00 1.73
2381 3450 3.711190 TGCCTCTTATGGACTAATGCTCA 59.289 43.478 0.00 0.00 0.00 4.26
2401 3470 0.472471 GACCCTGGTCAAGGTGTGAA 59.528 55.000 11.45 0.00 45.78 3.18
2427 3496 6.127814 GGTCATGGCAACCATATCATAGATTG 60.128 42.308 0.00 0.00 43.15 2.67
2453 3522 4.142600 GGTATGCACATTGTCTTTCTGGTC 60.143 45.833 0.00 0.00 0.00 4.02
2454 3523 2.929641 TGCACATTGTCTTTCTGGTCA 58.070 42.857 0.00 0.00 0.00 4.02
2456 3525 3.066621 TGCACATTGTCTTTCTGGTCAAC 59.933 43.478 0.00 0.00 0.00 3.18
2490 3559 0.958091 CGCACCAATCAAGGGTTCAA 59.042 50.000 0.00 0.00 36.19 2.69
2491 3560 1.545582 CGCACCAATCAAGGGTTCAAT 59.454 47.619 0.00 0.00 36.19 2.57
2537 3606 8.687242 TCCGATATGATTATCTAGGACATGAAC 58.313 37.037 0.00 0.00 33.39 3.18
2549 3618 2.549754 GGACATGAACTGTGACTTGGTG 59.450 50.000 0.00 0.00 38.54 4.17
2551 3620 3.206150 ACATGAACTGTGACTTGGTGAC 58.794 45.455 0.00 0.00 36.48 3.67
2552 3621 3.205338 CATGAACTGTGACTTGGTGACA 58.795 45.455 0.00 0.00 39.83 3.58
2554 3623 6.323003 ACATGAACTGTGACTTGGTGACAAA 61.323 40.000 0.00 0.00 43.23 2.83
2555 3624 8.277370 ACATGAACTGTGACTTGGTGACAAAC 62.277 42.308 0.00 0.00 43.23 2.93
2569 3638 5.588648 TGGTGACAAACTCCTAAAGAAACAG 59.411 40.000 0.00 0.00 37.44 3.16
2570 3639 5.589050 GGTGACAAACTCCTAAAGAAACAGT 59.411 40.000 0.00 0.00 0.00 3.55
2571 3640 6.458342 GGTGACAAACTCCTAAAGAAACAGTG 60.458 42.308 0.00 0.00 0.00 3.66
2572 3641 5.588648 TGACAAACTCCTAAAGAAACAGTGG 59.411 40.000 0.00 0.00 0.00 4.00
2575 3644 3.477530 ACTCCTAAAGAAACAGTGGCAC 58.522 45.455 10.29 10.29 0.00 5.01
2576 3645 2.814336 CTCCTAAAGAAACAGTGGCACC 59.186 50.000 15.27 0.00 0.00 5.01
2577 3646 1.535462 CCTAAAGAAACAGTGGCACCG 59.465 52.381 15.27 6.67 0.00 4.94
2580 3649 1.589803 AAGAAACAGTGGCACCGTAC 58.410 50.000 15.27 8.36 0.00 3.67
2581 3650 0.466543 AGAAACAGTGGCACCGTACA 59.533 50.000 15.27 0.00 0.00 2.90
2582 3651 1.134340 AGAAACAGTGGCACCGTACAA 60.134 47.619 15.27 0.00 0.00 2.41
2583 3652 1.003223 GAAACAGTGGCACCGTACAAC 60.003 52.381 15.27 0.00 0.00 3.32
2584 3653 0.816421 AACAGTGGCACCGTACAACC 60.816 55.000 15.27 0.00 0.00 3.77
2585 3654 1.070786 CAGTGGCACCGTACAACCT 59.929 57.895 15.27 0.00 0.00 3.50
2587 3656 1.670083 GTGGCACCGTACAACCTCC 60.670 63.158 6.29 0.00 0.00 4.30
2588 3657 1.839747 TGGCACCGTACAACCTCCT 60.840 57.895 0.00 0.00 0.00 3.69
2591 3660 1.002315 GGCACCGTACAACCTCCTAAA 59.998 52.381 0.00 0.00 0.00 1.85
2593 3662 2.028748 GCACCGTACAACCTCCTAAAGA 60.029 50.000 0.00 0.00 0.00 2.52
2594 3663 3.555586 GCACCGTACAACCTCCTAAAGAA 60.556 47.826 0.00 0.00 0.00 2.52
2597 3666 6.400568 CACCGTACAACCTCCTAAAGAAATA 58.599 40.000 0.00 0.00 0.00 1.40
2599 3668 6.212187 ACCGTACAACCTCCTAAAGAAATAGT 59.788 38.462 0.00 0.00 0.00 2.12
2600 3669 6.534079 CCGTACAACCTCCTAAAGAAATAGTG 59.466 42.308 0.00 0.00 0.00 2.74
2601 3670 6.534079 CGTACAACCTCCTAAAGAAATAGTGG 59.466 42.308 0.00 0.00 0.00 4.00
2602 3671 6.449830 ACAACCTCCTAAAGAAATAGTGGT 57.550 37.500 0.00 0.00 32.65 4.16
2603 3672 7.563724 ACAACCTCCTAAAGAAATAGTGGTA 57.436 36.000 0.00 0.00 31.72 3.25
2607 3676 7.054751 ACCTCCTAAAGAAATAGTGGTATTGC 58.945 38.462 0.00 0.00 30.83 3.56
2615 3684 6.913170 AGAAATAGTGGTATTGCTGTTGTTG 58.087 36.000 0.00 0.00 33.68 3.33
2616 3685 4.701956 ATAGTGGTATTGCTGTTGTTGC 57.298 40.909 0.00 0.00 0.00 4.17
2627 3696 2.608506 GCTGTTGTTGCTGCATGATGAA 60.609 45.455 1.84 0.00 34.18 2.57
2638 3707 4.865925 GCTGCATGATGAATGTTGCTTTTA 59.134 37.500 0.00 0.00 38.65 1.52
2643 3713 8.468399 TGCATGATGAATGTTGCTTTTAGATAA 58.532 29.630 0.00 0.00 38.65 1.75
2672 3742 4.734398 TCAACAGTGGAAGCAAATTGTT 57.266 36.364 0.00 0.00 0.00 2.83
2676 3746 6.040278 TCAACAGTGGAAGCAAATTGTTATCA 59.960 34.615 0.00 0.00 0.00 2.15
2742 3812 8.694540 ACAGCATTTCATTTACATTATGGCTAA 58.305 29.630 0.00 0.00 0.00 3.09
2743 3813 8.971321 CAGCATTTCATTTACATTATGGCTAAC 58.029 33.333 0.00 0.00 0.00 2.34
2802 3872 2.227388 CTGTTTCTGACCCTGAACATGC 59.773 50.000 0.00 0.00 0.00 4.06
2847 3917 5.771666 AGGGACCATACTGCAAATATCATTG 59.228 40.000 0.00 0.00 0.00 2.82
2848 3918 5.536161 GGGACCATACTGCAAATATCATTGT 59.464 40.000 0.00 0.00 32.80 2.71
2857 3927 6.070897 TGCAAATATCATTGTTCGGTATGG 57.929 37.500 0.00 0.00 32.80 2.74
2858 3928 5.825151 TGCAAATATCATTGTTCGGTATGGA 59.175 36.000 0.00 0.00 32.80 3.41
2860 3930 6.636850 GCAAATATCATTGTTCGGTATGGAAC 59.363 38.462 0.00 0.00 45.10 3.62
2888 3958 9.693739 TTAATAACTCCCTATTTTGCATCTGAA 57.306 29.630 0.00 0.00 0.00 3.02
2908 3978 7.717351 CTGAAGCAGATAGGCATGCAATGTG 62.717 48.000 21.36 20.03 45.01 3.21
3028 4098 9.507329 AAAAGAACAATCATAGCTTCTCTTGTA 57.493 29.630 0.00 0.00 0.00 2.41
3049 4119 0.464036 TCCCGAATGGTTCCTCATCG 59.536 55.000 0.00 0.00 34.77 3.84
3060 4130 3.261897 GGTTCCTCATCGACCATATCCAT 59.738 47.826 0.00 0.00 33.61 3.41
3069 4139 7.495055 TCATCGACCATATCCATATGATTCTG 58.505 38.462 3.65 0.00 42.05 3.02
3154 4225 0.906756 TGGTCAAGCCTCCCTCAGAG 60.907 60.000 0.00 0.00 42.83 3.35
3157 4228 2.284258 AAGCCTCCCTCAGAGCGT 60.284 61.111 0.00 0.00 41.74 5.07
3166 4237 1.667154 CCTCAGAGCGTTCCGATCCA 61.667 60.000 0.00 0.00 43.62 3.41
3176 4247 3.006940 CGTTCCGATCCAAGAAATCCAA 58.993 45.455 0.00 0.00 0.00 3.53
3181 4252 2.742053 CGATCCAAGAAATCCAACACGT 59.258 45.455 0.00 0.00 0.00 4.49
3191 4262 1.658994 TCCAACACGTCCACTGAAAC 58.341 50.000 0.00 0.00 0.00 2.78
3208 4279 4.503910 TGAAACTAATGTCAGTCGATGGG 58.496 43.478 0.00 0.00 0.00 4.00
3231 4302 7.101054 GGGTTAAAAAGGGCTTTAAGGTATTG 58.899 38.462 0.00 0.00 32.74 1.90
3232 4303 7.256404 GGGTTAAAAAGGGCTTTAAGGTATTGT 60.256 37.037 0.00 0.00 32.74 2.71
3233 4304 8.152246 GGTTAAAAAGGGCTTTAAGGTATTGTT 58.848 33.333 0.00 0.00 32.74 2.83
3234 4305 9.550406 GTTAAAAAGGGCTTTAAGGTATTGTTT 57.450 29.630 0.00 0.00 32.74 2.83
3237 4308 9.772973 AAAAAGGGCTTTAAGGTATTGTTTTAG 57.227 29.630 0.00 0.00 31.63 1.85
3238 4309 7.476540 AAGGGCTTTAAGGTATTGTTTTAGG 57.523 36.000 0.00 0.00 0.00 2.69
3239 4310 6.558498 AGGGCTTTAAGGTATTGTTTTAGGT 58.442 36.000 0.00 0.00 0.00 3.08
3240 4311 6.662234 AGGGCTTTAAGGTATTGTTTTAGGTC 59.338 38.462 0.00 0.00 0.00 3.85
3241 4312 6.434965 GGGCTTTAAGGTATTGTTTTAGGTCA 59.565 38.462 0.00 0.00 0.00 4.02
3242 4313 7.039574 GGGCTTTAAGGTATTGTTTTAGGTCAA 60.040 37.037 0.00 0.00 0.00 3.18
3243 4314 8.361889 GGCTTTAAGGTATTGTTTTAGGTCAAA 58.638 33.333 0.00 0.00 0.00 2.69
3244 4315 9.752961 GCTTTAAGGTATTGTTTTAGGTCAAAA 57.247 29.630 0.00 0.00 33.66 2.44
3281 4352 9.872721 TTCGGTAGATATTATGTGTGTTTACAA 57.127 29.630 0.00 0.00 38.82 2.41
3287 4358 9.342308 AGATATTATGTGTGTTTACAATCAGGG 57.658 33.333 0.00 0.00 38.82 4.45
3288 4359 6.773976 ATTATGTGTGTTTACAATCAGGGG 57.226 37.500 0.00 0.00 38.82 4.79
3289 4360 2.235016 TGTGTGTTTACAATCAGGGGC 58.765 47.619 0.00 0.00 38.82 5.80
3290 4361 2.158534 TGTGTGTTTACAATCAGGGGCT 60.159 45.455 0.00 0.00 38.82 5.19
3291 4362 2.890945 GTGTGTTTACAATCAGGGGCTT 59.109 45.455 0.00 0.00 38.82 4.35
3292 4363 3.320826 GTGTGTTTACAATCAGGGGCTTT 59.679 43.478 0.00 0.00 38.82 3.51
3293 4364 4.521256 GTGTGTTTACAATCAGGGGCTTTA 59.479 41.667 0.00 0.00 38.82 1.85
3294 4365 5.010213 GTGTGTTTACAATCAGGGGCTTTAA 59.990 40.000 0.00 0.00 38.82 1.52
3295 4366 5.242838 TGTGTTTACAATCAGGGGCTTTAAG 59.757 40.000 0.00 0.00 32.88 1.85
3296 4367 4.770010 TGTTTACAATCAGGGGCTTTAAGG 59.230 41.667 0.00 0.00 0.00 2.69
3297 4368 4.668138 TTACAATCAGGGGCTTTAAGGT 57.332 40.909 0.00 0.00 0.00 3.50
3298 4369 2.807676 ACAATCAGGGGCTTTAAGGTG 58.192 47.619 0.00 0.00 0.00 4.00
3299 4370 2.110011 ACAATCAGGGGCTTTAAGGTGT 59.890 45.455 0.00 0.00 0.00 4.16
3300 4371 3.165071 CAATCAGGGGCTTTAAGGTGTT 58.835 45.455 0.00 0.00 0.00 3.32
3301 4372 3.542969 ATCAGGGGCTTTAAGGTGTTT 57.457 42.857 0.00 0.00 0.00 2.83
3302 4373 3.322191 TCAGGGGCTTTAAGGTGTTTT 57.678 42.857 0.00 0.00 0.00 2.43
3306 4377 3.576982 AGGGGCTTTAAGGTGTTTTAAGC 59.423 43.478 0.00 0.00 45.86 3.09
3311 4382 6.510746 GCTTTAAGGTGTTTTAAGCACTTG 57.489 37.500 11.41 0.00 45.87 3.16
3312 4383 6.040247 GCTTTAAGGTGTTTTAAGCACTTGT 58.960 36.000 11.41 1.00 45.87 3.16
3313 4384 6.019881 GCTTTAAGGTGTTTTAAGCACTTGTG 60.020 38.462 11.41 0.00 45.87 3.33
3322 4393 6.870965 TGTTTTAAGCACTTGTGTTTGTTCAT 59.129 30.769 12.01 0.00 0.00 2.57
3330 4402 6.020360 GCACTTGTGTTTGTTCATCTTTTCTC 60.020 38.462 2.61 0.00 0.00 2.87
3331 4403 6.473455 CACTTGTGTTTGTTCATCTTTTCTCC 59.527 38.462 0.00 0.00 0.00 3.71
3342 4414 9.218525 TGTTCATCTTTTCTCCTTATATCCTCT 57.781 33.333 0.00 0.00 0.00 3.69
3362 4434 5.805994 CCTCTGACGAACATAAACTTCTACC 59.194 44.000 0.00 0.00 0.00 3.18
3363 4437 6.335471 TCTGACGAACATAAACTTCTACCA 57.665 37.500 0.00 0.00 0.00 3.25
3366 4440 5.350365 TGACGAACATAAACTTCTACCATGC 59.650 40.000 0.00 0.00 0.00 4.06
3373 4447 7.145323 ACATAAACTTCTACCATGCACAAAAC 58.855 34.615 0.00 0.00 0.00 2.43
3377 4451 5.242434 ACTTCTACCATGCACAAAACGATA 58.758 37.500 0.00 0.00 0.00 2.92
3380 4454 1.472480 ACCATGCACAAAACGATAGCC 59.528 47.619 0.00 0.00 42.67 3.93
3383 4457 2.177394 TGCACAAAACGATAGCCTGA 57.823 45.000 0.00 0.00 42.67 3.86
3395 4469 5.109903 ACGATAGCCTGAACTGTGAAATAC 58.890 41.667 0.00 0.00 42.67 1.89
3396 4470 5.109210 CGATAGCCTGAACTGTGAAATACA 58.891 41.667 0.00 0.00 37.78 2.29
3451 4526 3.646162 TGTACTGTCCAAATGTGAGGTCT 59.354 43.478 0.00 0.00 0.00 3.85
3455 4530 5.690865 ACTGTCCAAATGTGAGGTCTAAAA 58.309 37.500 0.00 0.00 0.00 1.52
3457 4532 5.070001 TGTCCAAATGTGAGGTCTAAAAGG 58.930 41.667 0.00 0.00 0.00 3.11
3458 4533 4.459337 GTCCAAATGTGAGGTCTAAAAGGG 59.541 45.833 0.00 0.00 0.00 3.95
3487 4562 7.436933 TCTAGCATATGTTGACAGACTAATGG 58.563 38.462 4.29 0.00 0.00 3.16
3497 4572 3.077359 ACAGACTAATGGCTGAAAGTGC 58.923 45.455 5.85 0.00 36.07 4.40
3502 4577 4.081406 ACTAATGGCTGAAAGTGCATCAA 58.919 39.130 0.00 0.00 35.30 2.57
3503 4578 4.708421 ACTAATGGCTGAAAGTGCATCAAT 59.292 37.500 0.00 0.00 35.30 2.57
3521 4596 7.068470 TGCATCAATCCTTGTAATAGCATGAAA 59.932 33.333 0.00 0.00 0.00 2.69
3524 4599 7.944061 TCAATCCTTGTAATAGCATGAAATGG 58.056 34.615 0.00 0.00 46.86 3.16
3528 4603 5.278660 CCTTGTAATAGCATGAAATGGAGGC 60.279 44.000 0.00 0.00 46.86 4.70
3529 4604 4.790937 TGTAATAGCATGAAATGGAGGCA 58.209 39.130 0.00 0.00 46.86 4.75
3535 4610 2.673043 GCATGAAATGGAGGCACTTGTG 60.673 50.000 0.00 0.00 46.86 3.33
3543 4618 2.012673 GGAGGCACTTGTGATGCTAAG 58.987 52.381 4.79 0.00 41.55 2.18
3544 4619 2.616510 GGAGGCACTTGTGATGCTAAGT 60.617 50.000 4.79 0.00 41.55 2.24
3545 4620 3.369471 GGAGGCACTTGTGATGCTAAGTA 60.369 47.826 4.79 0.00 41.55 2.24
3546 4621 4.446371 GAGGCACTTGTGATGCTAAGTAT 58.554 43.478 4.79 0.00 41.55 2.12
3550 4625 5.327091 GCACTTGTGATGCTAAGTATGTTG 58.673 41.667 4.79 0.00 40.08 3.33
3553 4628 7.017645 CACTTGTGATGCTAAGTATGTTGTTC 58.982 38.462 0.00 0.00 35.50 3.18
3555 4630 5.804639 TGTGATGCTAAGTATGTTGTTCCT 58.195 37.500 0.00 0.00 0.00 3.36
3561 4636 9.937175 GATGCTAAGTATGTTGTTCCTTAATTC 57.063 33.333 0.00 0.00 0.00 2.17
3562 4637 8.276252 TGCTAAGTATGTTGTTCCTTAATTCC 57.724 34.615 0.00 0.00 0.00 3.01
3566 4641 6.469410 AGTATGTTGTTCCTTAATTCCGACA 58.531 36.000 0.00 0.00 0.00 4.35
3567 4642 7.110155 AGTATGTTGTTCCTTAATTCCGACAT 58.890 34.615 0.00 0.00 0.00 3.06
3569 4644 6.642707 TGTTGTTCCTTAATTCCGACATTT 57.357 33.333 0.00 0.00 0.00 2.32
3570 4645 6.674066 TGTTGTTCCTTAATTCCGACATTTC 58.326 36.000 0.00 0.00 0.00 2.17
3571 4646 5.539582 TGTTCCTTAATTCCGACATTTCG 57.460 39.130 0.00 0.00 45.44 3.46
3584 4659 3.666638 CGACATTTCGTTGCAGTAATGCA 60.667 43.478 14.87 14.87 40.43 3.96
3709 4785 6.631971 TTGATGCAAGTTTCATCTACACAA 57.368 33.333 15.15 0.85 40.59 3.33
4059 5135 4.571919 TCAACCGAACGACCTTGATTTAT 58.428 39.130 0.00 0.00 0.00 1.40
4181 5257 0.109272 GAACACGATCGAGCTGGACA 60.109 55.000 24.34 0.00 0.00 4.02
4245 5321 4.972875 GCTGATGGCCTAGCTTGT 57.027 55.556 16.63 0.00 36.99 3.16
4319 5398 1.143684 ACACCAGAAGGAGCACACAAT 59.856 47.619 0.00 0.00 38.69 2.71
4376 5457 1.409427 GCGACAGCATAGGGAGTAGTT 59.591 52.381 0.00 0.00 44.35 2.24
4467 5551 1.418373 GCGAATGTTTTCTGTTGCCC 58.582 50.000 0.00 0.00 0.00 5.36
4522 5606 1.089920 GATTCAGTGCCTTGCGTGAT 58.910 50.000 0.00 0.00 0.00 3.06
4544 5628 3.588277 GTCAAAGGCTGACGACTGA 57.412 52.632 0.00 0.00 44.95 3.41
4583 5667 2.284331 TAGACCCAGCCTCGGCAA 60.284 61.111 11.02 0.00 44.88 4.52
4602 5686 3.615496 GCAATTCAGCATGTAAAAGGCAG 59.385 43.478 0.00 0.00 38.31 4.85
4640 5724 8.519492 TTTTTACTGCTAGAATCAAAATGCAC 57.481 30.769 0.00 0.00 0.00 4.57
4653 5737 0.689080 AATGCACCCCCACAACAACA 60.689 50.000 0.00 0.00 0.00 3.33
4686 5770 5.070001 TGCCCAGTGTATTATAGCAAATCC 58.930 41.667 0.00 0.00 0.00 3.01
4693 5777 9.687210 CAGTGTATTATAGCAAATCCGTACTAA 57.313 33.333 0.00 0.00 0.00 2.24
4712 5806 7.009631 CGTACTAATGATGACTTGGAGAAACAG 59.990 40.741 0.00 0.00 0.00 3.16
4718 5812 4.753516 TGACTTGGAGAAACAGAAGACA 57.246 40.909 0.00 0.00 0.00 3.41
4732 5826 2.880890 AGAAGACATTGCAGAAACGCTT 59.119 40.909 0.00 0.00 0.00 4.68
4735 5863 4.410492 AGACATTGCAGAAACGCTTTAG 57.590 40.909 0.00 0.00 0.00 1.85
4740 5868 5.468746 ACATTGCAGAAACGCTTTAGACTTA 59.531 36.000 0.00 0.00 0.00 2.24
4743 5871 3.432252 GCAGAAACGCTTTAGACTTAGCA 59.568 43.478 9.20 0.00 37.23 3.49
4753 5881 6.521133 CGCTTTAGACTTAGCAACATCTTTTG 59.479 38.462 9.20 0.00 37.23 2.44
4760 5888 9.890629 AGACTTAGCAACATCTTTTGTGATATA 57.109 29.630 0.00 0.00 38.99 0.86
4761 5889 9.922305 GACTTAGCAACATCTTTTGTGATATAC 57.078 33.333 0.00 0.00 38.99 1.47
4765 5893 7.341805 AGCAACATCTTTTGTGATATACTCCT 58.658 34.615 0.00 0.00 38.99 3.69
4767 5895 8.125448 GCAACATCTTTTGTGATATACTCCTTC 58.875 37.037 0.00 0.00 38.99 3.46
4769 5897 6.986817 ACATCTTTTGTGATATACTCCTTCCG 59.013 38.462 0.00 0.00 37.11 4.30
4771 5899 7.649533 TCTTTTGTGATATACTCCTTCCGTA 57.350 36.000 0.00 0.00 0.00 4.02
4772 5900 7.486647 TCTTTTGTGATATACTCCTTCCGTAC 58.513 38.462 0.00 0.00 0.00 3.67
4773 5901 7.341256 TCTTTTGTGATATACTCCTTCCGTACT 59.659 37.037 0.00 0.00 0.00 2.73
4774 5902 8.523915 TTTTGTGATATACTCCTTCCGTACTA 57.476 34.615 0.00 0.00 0.00 1.82
4775 5903 8.523915 TTTGTGATATACTCCTTCCGTACTAA 57.476 34.615 0.00 0.00 0.00 2.24
4776 5904 8.701908 TTGTGATATACTCCTTCCGTACTAAT 57.298 34.615 0.00 0.00 0.00 1.73
4778 5906 9.139734 TGTGATATACTCCTTCCGTACTAATTT 57.860 33.333 0.00 0.00 0.00 1.82
4781 5909 9.786105 GATATACTCCTTCCGTACTAATTTAGC 57.214 37.037 3.28 0.00 0.00 3.09
4783 5911 4.961099 ACTCCTTCCGTACTAATTTAGCCT 59.039 41.667 3.28 0.00 0.00 4.58
4784 5912 6.131961 ACTCCTTCCGTACTAATTTAGCCTA 58.868 40.000 3.28 0.00 0.00 3.93
4786 5914 7.124750 ACTCCTTCCGTACTAATTTAGCCTAAA 59.875 37.037 0.00 0.00 0.00 1.85
4787 5915 7.850193 TCCTTCCGTACTAATTTAGCCTAAAA 58.150 34.615 0.21 0.00 0.00 1.52
4821 5949 1.541620 GGTGGGAAGAGGGGGAAGT 60.542 63.158 0.00 0.00 0.00 3.01
4877 6005 2.107141 GGGTCGCCGGAGAAGATG 59.893 66.667 10.32 0.00 0.00 2.90
4884 6012 1.832912 CCGGAGAAGATGGGGAAGG 59.167 63.158 0.00 0.00 0.00 3.46
4885 6013 0.983378 CCGGAGAAGATGGGGAAGGT 60.983 60.000 0.00 0.00 0.00 3.50
4914 6042 3.305403 GCGAGTGGATATTTCAGATCCGA 60.305 47.826 0.00 0.00 45.15 4.55
4920 6048 4.585581 TGGATATTTCAGATCCGACGGTTA 59.414 41.667 14.79 0.00 45.15 2.85
4932 6060 1.401931 CGACGGTTAGTGGACATTCGT 60.402 52.381 0.00 0.00 0.00 3.85
4943 6071 3.118454 CATTCGTGCGGGCGAGTT 61.118 61.111 0.00 0.00 42.10 3.01
5005 6135 2.568935 GATGCAGTTCTGTTCGGCGC 62.569 60.000 0.00 0.00 0.00 6.53
5009 6139 4.072088 GTTCTGTTCGGCGCGTGG 62.072 66.667 8.43 0.00 0.00 4.94
5022 6152 2.159435 GGCGCGTGGAGTGATTTTTAAT 60.159 45.455 8.43 0.00 0.00 1.40
5024 6154 3.669557 GCGCGTGGAGTGATTTTTAATGT 60.670 43.478 8.43 0.00 0.00 2.71
5025 6155 3.845775 CGCGTGGAGTGATTTTTAATGTG 59.154 43.478 0.00 0.00 0.00 3.21
5028 6158 3.608073 GTGGAGTGATTTTTAATGTGCGC 59.392 43.478 0.00 0.00 0.00 6.09
5035 6165 5.509972 GTGATTTTTAATGTGCGCGTGATTA 59.490 36.000 8.43 5.27 0.00 1.75
5063 6193 4.704833 GCTGGAGCTGCCGGTTCA 62.705 66.667 1.90 0.00 45.49 3.18
5065 6195 3.241530 TGGAGCTGCCGGTTCAGT 61.242 61.111 1.90 0.00 40.66 3.41
5078 6208 0.947180 GTTCAGTCGGGCACGCTAAA 60.947 55.000 1.67 0.00 40.69 1.85
5099 6229 4.320928 CCGTTTTTCAGGCGCGCA 62.321 61.111 34.42 10.03 0.00 6.09
5118 6250 3.720818 CGCAACTTATTTAGCGCATCTTG 59.279 43.478 11.47 0.28 43.80 3.02
5220 6529 5.015817 ACCAACCCCACTTTCCTCAATATTA 59.984 40.000 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.080093 GGCTTCATGGTCGTCGTGA 60.080 57.895 0.00 0.64 39.45 4.35
2 3 2.444624 CGGCTTCATGGTCGTCGTG 61.445 63.158 0.00 0.00 0.00 4.35
3 4 2.126071 CGGCTTCATGGTCGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
13 14 4.980805 GTGGACGTGCCGGCTTCA 62.981 66.667 29.70 9.96 40.66 3.02
54 55 3.528370 CTAGGACCCCGAGTGGCG 61.528 72.222 0.00 0.00 40.47 5.69
66 67 3.081409 GCGGTGGCCTTCCTAGGA 61.081 66.667 7.62 7.62 45.05 2.94
67 68 3.083997 AGCGGTGGCCTTCCTAGG 61.084 66.667 3.32 0.82 45.02 3.02
69 70 3.081409 GGAGCGGTGGCCTTCCTA 61.081 66.667 3.32 0.00 41.24 2.94
114 115 3.195698 GCCGACGATGTTCAGCCC 61.196 66.667 0.00 0.00 0.00 5.19
150 151 2.725312 GCTGTCCGCCTCTCCATCA 61.725 63.158 0.00 0.00 0.00 3.07
153 154 2.604686 AAGCTGTCCGCCTCTCCA 60.605 61.111 0.00 0.00 40.39 3.86
193 194 0.179124 GCTCTGCCTCTGTAACCTCG 60.179 60.000 0.00 0.00 0.00 4.63
233 234 5.646360 AGAACTGAAGTTTCGACTTTTCCAA 59.354 36.000 0.00 0.00 38.56 3.53
242 243 4.402056 ACCAAGAGAACTGAAGTTTCGA 57.598 40.909 0.00 0.00 38.56 3.71
284 285 2.561549 TAAATGGTCGTCGACGCCCC 62.562 60.000 32.47 30.29 36.41 5.80
373 394 4.165779 GCCGAAATTCGATCAAATTGTGT 58.834 39.130 17.75 0.00 43.74 3.72
375 396 3.730662 CGGCCGAAATTCGATCAAATTGT 60.731 43.478 24.07 0.00 43.74 2.71
377 398 2.223479 CCGGCCGAAATTCGATCAAATT 60.223 45.455 30.73 0.00 43.74 1.82
382 403 1.525619 CTAACCGGCCGAAATTCGATC 59.474 52.381 30.73 7.92 43.74 3.69
401 422 5.560966 ACATTTTGACAACAACTCGAACT 57.439 34.783 0.00 0.00 35.63 3.01
477 518 1.731098 GCAACCCGTAAATTTGCTCCG 60.731 52.381 0.00 0.00 41.98 4.63
489 530 0.606401 CATCTCCAACAGCAACCCGT 60.606 55.000 0.00 0.00 0.00 5.28
533 574 7.265673 TCTTGAACTCTTTTTCTCTTTCTCGA 58.734 34.615 0.00 0.00 0.00 4.04
548 596 6.043243 TGTGGAAGGAAATACTCTTGAACTCT 59.957 38.462 0.00 0.00 0.00 3.24
685 736 1.452110 TCCATTGCGTCATCAGGTTG 58.548 50.000 0.00 0.00 0.00 3.77
686 737 2.086869 CTTCCATTGCGTCATCAGGTT 58.913 47.619 0.00 0.00 0.00 3.50
688 739 1.019673 CCTTCCATTGCGTCATCAGG 58.980 55.000 0.00 0.00 0.00 3.86
690 741 0.322366 TGCCTTCCATTGCGTCATCA 60.322 50.000 0.00 0.00 0.00 3.07
691 742 0.810648 TTGCCTTCCATTGCGTCATC 59.189 50.000 0.00 0.00 0.00 2.92
692 743 1.203052 CTTTGCCTTCCATTGCGTCAT 59.797 47.619 0.00 0.00 0.00 3.06
721 772 7.616313 ACGCCCCATTTTTCTGAAAAATAATA 58.384 30.769 30.13 12.24 46.34 0.98
819 1580 5.438761 AATATTTCTTATGCCGAGGTTGC 57.561 39.130 0.00 0.00 0.00 4.17
834 1595 5.410439 ACGCCCGTCCACAATATAATATTTC 59.590 40.000 0.00 0.00 0.00 2.17
838 1599 4.059511 CAACGCCCGTCCACAATATAATA 58.940 43.478 0.00 0.00 0.00 0.98
839 1600 2.875933 CAACGCCCGTCCACAATATAAT 59.124 45.455 0.00 0.00 0.00 1.28
866 1627 2.683362 GGAAGTATTGGAGGGAAAAGCG 59.317 50.000 0.00 0.00 0.00 4.68
1284 2055 2.194056 CGGAGGCCGGAGTAGGTA 59.806 66.667 5.05 0.00 44.15 3.08
1959 2730 2.381911 GCATCAGTTGATCCACCCAAT 58.618 47.619 0.00 0.00 31.21 3.16
2061 2832 3.181436 CCATCTTAATCATCTGCCCCACT 60.181 47.826 0.00 0.00 0.00 4.00
2076 2847 1.202964 TCCGCCGAGATACCCATCTTA 60.203 52.381 0.00 0.00 41.78 2.10
2085 2856 0.750249 TGCTGAAATCCGCCGAGATA 59.250 50.000 0.00 0.00 0.00 1.98
2086 2857 0.107456 ATGCTGAAATCCGCCGAGAT 59.893 50.000 0.00 0.00 0.00 2.75
2208 3261 2.239654 TCTTCCTGGGTCTTATTGGCAG 59.760 50.000 0.00 0.00 0.00 4.85
2220 3273 5.165961 TCTTGTTTCTACATCTTCCTGGG 57.834 43.478 0.00 0.00 33.44 4.45
2228 3281 8.704234 CAGTCAGTAGTTTCTTGTTTCTACATC 58.296 37.037 0.00 0.00 36.30 3.06
2238 3291 6.421202 GTCCAAGTACAGTCAGTAGTTTCTTG 59.579 42.308 0.00 0.00 42.34 3.02
2239 3292 6.097839 TGTCCAAGTACAGTCAGTAGTTTCTT 59.902 38.462 0.00 0.00 42.34 2.52
2254 3314 5.875359 CAGGATTTCCTAAGTGTCCAAGTAC 59.125 44.000 0.00 0.00 46.65 2.73
2261 3321 4.254492 GACCACAGGATTTCCTAAGTGTC 58.746 47.826 13.21 8.34 46.65 3.67
2267 3327 3.711704 GGAGATGACCACAGGATTTCCTA 59.288 47.826 0.00 0.00 46.65 2.94
2275 3335 1.755959 CTCAGAGGAGATGACCACAGG 59.244 57.143 0.00 0.00 44.26 4.00
2306 3366 3.215151 TCAGTCTTAGCACTCCCGATAG 58.785 50.000 0.00 0.00 0.00 2.08
2311 3371 7.448748 TTTATTTTTCAGTCTTAGCACTCCC 57.551 36.000 0.00 0.00 0.00 4.30
2342 3410 0.665835 GCAACGTGTGTCCAAATGGA 59.334 50.000 0.00 0.00 43.08 3.41
2349 3417 1.732259 CATAAGAGGCAACGTGTGTCC 59.268 52.381 0.00 0.00 46.39 4.02
2365 3434 4.101585 CAGGGTCTGAGCATTAGTCCATAA 59.898 45.833 9.30 0.00 32.44 1.90
2368 3437 1.833630 CAGGGTCTGAGCATTAGTCCA 59.166 52.381 9.30 0.00 32.44 4.02
2401 3470 3.889859 ATGATATGGTTGCCATGACCT 57.110 42.857 10.64 0.00 44.84 3.85
2427 3496 1.094785 AAGACAATGTGCATACCGCC 58.905 50.000 0.00 0.00 41.33 6.13
2453 3522 1.071239 GCGAATCGATCATGGTCGTTG 60.071 52.381 26.55 14.08 42.07 4.10
2454 3523 1.209128 GCGAATCGATCATGGTCGTT 58.791 50.000 26.55 19.39 42.07 3.85
2456 3525 0.504384 GTGCGAATCGATCATGGTCG 59.496 55.000 22.43 22.43 42.74 4.79
2467 3536 1.463674 ACCCTTGATTGGTGCGAATC 58.536 50.000 0.00 0.86 33.94 2.52
2490 3559 6.836527 TCGGAAAATCCATACAAATAACCCAT 59.163 34.615 0.00 0.00 35.91 4.00
2491 3560 6.188407 TCGGAAAATCCATACAAATAACCCA 58.812 36.000 0.00 0.00 35.91 4.51
2532 3601 3.558931 TGTCACCAAGTCACAGTTCAT 57.441 42.857 0.00 0.00 0.00 2.57
2537 3606 2.614057 GGAGTTTGTCACCAAGTCACAG 59.386 50.000 0.00 0.00 0.00 3.66
2549 3618 5.505819 GCCACTGTTTCTTTAGGAGTTTGTC 60.506 44.000 0.00 0.00 0.00 3.18
2551 3620 4.338118 TGCCACTGTTTCTTTAGGAGTTTG 59.662 41.667 0.00 0.00 0.00 2.93
2552 3621 4.338400 GTGCCACTGTTTCTTTAGGAGTTT 59.662 41.667 0.00 0.00 0.00 2.66
2554 3623 3.477530 GTGCCACTGTTTCTTTAGGAGT 58.522 45.455 0.00 0.00 0.00 3.85
2555 3624 2.814336 GGTGCCACTGTTTCTTTAGGAG 59.186 50.000 0.00 0.00 0.00 3.69
2557 3626 1.535462 CGGTGCCACTGTTTCTTTAGG 59.465 52.381 0.00 0.00 0.00 2.69
2558 3627 2.218603 ACGGTGCCACTGTTTCTTTAG 58.781 47.619 2.74 0.00 32.95 1.85
2559 3628 2.335316 ACGGTGCCACTGTTTCTTTA 57.665 45.000 2.74 0.00 32.95 1.85
2560 3629 1.944709 GTACGGTGCCACTGTTTCTTT 59.055 47.619 15.62 0.00 38.84 2.52
2561 3630 1.134340 TGTACGGTGCCACTGTTTCTT 60.134 47.619 15.62 0.00 38.84 2.52
2562 3631 0.466543 TGTACGGTGCCACTGTTTCT 59.533 50.000 15.62 0.00 38.84 2.52
2563 3632 1.003223 GTTGTACGGTGCCACTGTTTC 60.003 52.381 15.62 9.36 38.84 2.78
2564 3633 1.018910 GTTGTACGGTGCCACTGTTT 58.981 50.000 15.62 0.00 38.84 2.83
2565 3634 0.816421 GGTTGTACGGTGCCACTGTT 60.816 55.000 15.62 0.00 38.84 3.16
2567 3636 0.949105 GAGGTTGTACGGTGCCACTG 60.949 60.000 1.10 1.10 0.00 3.66
2569 3638 1.670083 GGAGGTTGTACGGTGCCAC 60.670 63.158 0.00 0.00 0.00 5.01
2570 3639 0.542467 TAGGAGGTTGTACGGTGCCA 60.542 55.000 0.00 0.00 0.00 4.92
2571 3640 0.609662 TTAGGAGGTTGTACGGTGCC 59.390 55.000 0.00 0.00 0.00 5.01
2572 3641 2.028748 TCTTTAGGAGGTTGTACGGTGC 60.029 50.000 0.00 0.00 0.00 5.01
2575 3644 6.534079 CACTATTTCTTTAGGAGGTTGTACGG 59.466 42.308 0.00 0.00 0.00 4.02
2576 3645 6.534079 CCACTATTTCTTTAGGAGGTTGTACG 59.466 42.308 0.00 0.00 0.00 3.67
2577 3646 7.392418 ACCACTATTTCTTTAGGAGGTTGTAC 58.608 38.462 0.00 0.00 31.56 2.90
2580 3649 8.893727 CAATACCACTATTTCTTTAGGAGGTTG 58.106 37.037 0.00 0.00 35.05 3.77
2581 3650 7.556635 GCAATACCACTATTTCTTTAGGAGGTT 59.443 37.037 0.00 0.00 35.05 3.50
2582 3651 7.054751 GCAATACCACTATTTCTTTAGGAGGT 58.945 38.462 0.00 0.00 36.39 3.85
2583 3652 7.227512 CAGCAATACCACTATTTCTTTAGGAGG 59.772 40.741 0.00 0.00 0.00 4.30
2584 3653 7.770897 ACAGCAATACCACTATTTCTTTAGGAG 59.229 37.037 0.00 0.00 0.00 3.69
2585 3654 7.630082 ACAGCAATACCACTATTTCTTTAGGA 58.370 34.615 0.00 0.00 0.00 2.94
2587 3656 8.730680 ACAACAGCAATACCACTATTTCTTTAG 58.269 33.333 0.00 0.00 0.00 1.85
2588 3657 8.630054 ACAACAGCAATACCACTATTTCTTTA 57.370 30.769 0.00 0.00 0.00 1.85
2591 3660 6.570378 GCAACAACAGCAATACCACTATTTCT 60.570 38.462 0.00 0.00 0.00 2.52
2593 3662 5.243730 AGCAACAACAGCAATACCACTATTT 59.756 36.000 0.00 0.00 0.00 1.40
2594 3663 4.766891 AGCAACAACAGCAATACCACTATT 59.233 37.500 0.00 0.00 0.00 1.73
2597 3666 2.294233 CAGCAACAACAGCAATACCACT 59.706 45.455 0.00 0.00 0.00 4.00
2599 3668 1.000385 GCAGCAACAACAGCAATACCA 60.000 47.619 0.00 0.00 0.00 3.25
2600 3669 1.000385 TGCAGCAACAACAGCAATACC 60.000 47.619 0.00 0.00 33.48 2.73
2601 3670 2.420628 TGCAGCAACAACAGCAATAC 57.579 45.000 0.00 0.00 33.48 1.89
2602 3671 2.557490 TCATGCAGCAACAACAGCAATA 59.443 40.909 0.00 0.00 40.76 1.90
2603 3672 1.341852 TCATGCAGCAACAACAGCAAT 59.658 42.857 0.00 0.00 40.76 3.56
2607 3676 3.291809 TTCATCATGCAGCAACAACAG 57.708 42.857 0.00 0.00 0.00 3.16
2615 3684 2.579207 AGCAACATTCATCATGCAGC 57.421 45.000 0.00 0.00 41.18 5.25
2616 3685 6.327154 TCTAAAAGCAACATTCATCATGCAG 58.673 36.000 0.00 0.00 41.18 4.41
2638 3707 8.084684 GCTTCCACTGTTGAAAATTTCTTATCT 58.915 33.333 7.29 0.00 0.00 1.98
2643 3713 5.596836 TGCTTCCACTGTTGAAAATTTCT 57.403 34.783 7.29 0.00 0.00 2.52
2672 3742 5.829391 AGCATAGCACCATGTGAATTTGATA 59.171 36.000 0.00 0.00 35.23 2.15
2676 3746 5.410355 AAAGCATAGCACCATGTGAATTT 57.590 34.783 0.00 0.00 35.23 1.82
2742 3812 3.472652 TGTACATCTGTTCTTTTGGCGT 58.527 40.909 0.00 0.00 0.00 5.68
2743 3813 4.083324 ACATGTACATCTGTTCTTTTGGCG 60.083 41.667 5.07 0.00 0.00 5.69
2802 3872 0.526211 GCGCCTAAAAAGGAACAGGG 59.474 55.000 0.00 0.00 0.00 4.45
2815 3885 0.689745 AGTATGGTCCCTTGCGCCTA 60.690 55.000 4.18 0.00 0.00 3.93
2847 3917 7.041576 GGGAGTTATTAATGTTCCATACCGAAC 60.042 40.741 13.44 0.00 42.10 3.95
2848 3918 6.993902 GGGAGTTATTAATGTTCCATACCGAA 59.006 38.462 13.44 0.00 0.00 4.30
2860 3930 9.903682 CAGATGCAAAATAGGGAGTTATTAATG 57.096 33.333 0.00 0.00 0.00 1.90
2888 3958 1.954382 CACATTGCATGCCTATCTGCT 59.046 47.619 16.68 0.00 39.16 4.24
2908 3978 9.965824 CCAATAGGAAACACACATAATTAATCC 57.034 33.333 0.00 0.00 36.89 3.01
3028 4098 2.485479 CGATGAGGAACCATTCGGGAAT 60.485 50.000 0.00 0.00 41.15 3.01
3049 4119 9.896645 AATGTACAGAATCATATGGATATGGTC 57.103 33.333 0.33 5.40 40.35 4.02
3157 4228 3.756434 GTGTTGGATTTCTTGGATCGGAA 59.244 43.478 0.00 0.00 0.00 4.30
3166 4237 2.878406 CAGTGGACGTGTTGGATTTCTT 59.122 45.455 0.00 0.00 0.00 2.52
3176 4247 4.056050 GACATTAGTTTCAGTGGACGTGT 58.944 43.478 0.00 0.00 0.00 4.49
3191 4262 6.978343 TTTTAACCCATCGACTGACATTAG 57.022 37.500 0.00 0.00 0.00 1.73
3208 4279 9.550406 AAACAATACCTTAAAGCCCTTTTTAAC 57.450 29.630 0.00 0.00 34.23 2.01
3255 4326 9.872721 TTGTAAACACACATAATATCTACCGAA 57.127 29.630 0.00 0.00 0.00 4.30
3261 4332 9.342308 CCCTGATTGTAAACACACATAATATCT 57.658 33.333 0.00 0.00 0.00 1.98
3262 4333 8.567948 CCCCTGATTGTAAACACACATAATATC 58.432 37.037 0.00 0.00 0.00 1.63
3263 4334 7.014230 GCCCCTGATTGTAAACACACATAATAT 59.986 37.037 0.00 0.00 0.00 1.28
3264 4335 6.320164 GCCCCTGATTGTAAACACACATAATA 59.680 38.462 0.00 0.00 0.00 0.98
3265 4336 5.127031 GCCCCTGATTGTAAACACACATAAT 59.873 40.000 0.00 0.00 0.00 1.28
3266 4337 4.461081 GCCCCTGATTGTAAACACACATAA 59.539 41.667 0.00 0.00 0.00 1.90
3267 4338 4.013728 GCCCCTGATTGTAAACACACATA 58.986 43.478 0.00 0.00 0.00 2.29
3268 4339 2.825532 GCCCCTGATTGTAAACACACAT 59.174 45.455 0.00 0.00 0.00 3.21
3269 4340 2.158534 AGCCCCTGATTGTAAACACACA 60.159 45.455 0.00 0.00 0.00 3.72
3270 4341 2.514803 AGCCCCTGATTGTAAACACAC 58.485 47.619 0.00 0.00 0.00 3.82
3271 4342 2.969821 AGCCCCTGATTGTAAACACA 57.030 45.000 0.00 0.00 0.00 3.72
3272 4343 5.336451 CCTTAAAGCCCCTGATTGTAAACAC 60.336 44.000 0.00 0.00 0.00 3.32
3273 4344 4.770010 CCTTAAAGCCCCTGATTGTAAACA 59.230 41.667 0.00 0.00 0.00 2.83
3274 4345 4.770531 ACCTTAAAGCCCCTGATTGTAAAC 59.229 41.667 0.00 0.00 0.00 2.01
3275 4346 4.770010 CACCTTAAAGCCCCTGATTGTAAA 59.230 41.667 0.00 0.00 0.00 2.01
3276 4347 4.202631 ACACCTTAAAGCCCCTGATTGTAA 60.203 41.667 0.00 0.00 0.00 2.41
3277 4348 3.332485 ACACCTTAAAGCCCCTGATTGTA 59.668 43.478 0.00 0.00 0.00 2.41
3278 4349 2.110011 ACACCTTAAAGCCCCTGATTGT 59.890 45.455 0.00 0.00 0.00 2.71
3279 4350 2.807676 ACACCTTAAAGCCCCTGATTG 58.192 47.619 0.00 0.00 0.00 2.67
3280 4351 3.542969 AACACCTTAAAGCCCCTGATT 57.457 42.857 0.00 0.00 0.00 2.57
3281 4352 3.542969 AAACACCTTAAAGCCCCTGAT 57.457 42.857 0.00 0.00 0.00 2.90
3282 4353 3.322191 AAAACACCTTAAAGCCCCTGA 57.678 42.857 0.00 0.00 0.00 3.86
3283 4354 4.560716 GCTTAAAACACCTTAAAGCCCCTG 60.561 45.833 0.00 0.00 0.00 4.45
3284 4355 3.576982 GCTTAAAACACCTTAAAGCCCCT 59.423 43.478 0.00 0.00 0.00 4.79
3285 4356 3.322541 TGCTTAAAACACCTTAAAGCCCC 59.677 43.478 3.19 0.00 0.00 5.80
3286 4357 4.038763 AGTGCTTAAAACACCTTAAAGCCC 59.961 41.667 4.99 0.00 38.87 5.19
3287 4358 5.196341 AGTGCTTAAAACACCTTAAAGCC 57.804 39.130 4.99 0.00 38.87 4.35
3288 4359 6.019881 CACAAGTGCTTAAAACACCTTAAAGC 60.020 38.462 4.99 0.00 38.87 3.51
3289 4360 7.033185 ACACAAGTGCTTAAAACACCTTAAAG 58.967 34.615 0.00 0.00 38.87 1.85
3290 4361 6.926313 ACACAAGTGCTTAAAACACCTTAAA 58.074 32.000 0.00 0.00 38.87 1.52
3291 4362 6.518208 ACACAAGTGCTTAAAACACCTTAA 57.482 33.333 0.00 0.00 38.87 1.85
3292 4363 6.518208 AACACAAGTGCTTAAAACACCTTA 57.482 33.333 0.00 0.00 38.87 2.69
3293 4364 5.400066 AACACAAGTGCTTAAAACACCTT 57.600 34.783 0.00 0.00 38.87 3.50
3294 4365 5.167845 CAAACACAAGTGCTTAAAACACCT 58.832 37.500 0.00 0.00 38.87 4.00
3295 4366 4.926832 ACAAACACAAGTGCTTAAAACACC 59.073 37.500 0.00 0.00 38.87 4.16
3296 4367 6.144724 TGAACAAACACAAGTGCTTAAAACAC 59.855 34.615 0.00 0.96 38.35 3.32
3297 4368 6.216569 TGAACAAACACAAGTGCTTAAAACA 58.783 32.000 0.00 0.00 0.00 2.83
3298 4369 6.698359 TGAACAAACACAAGTGCTTAAAAC 57.302 33.333 0.00 0.00 0.00 2.43
3299 4370 7.319646 AGATGAACAAACACAAGTGCTTAAAA 58.680 30.769 0.00 0.00 0.00 1.52
3300 4371 6.862209 AGATGAACAAACACAAGTGCTTAAA 58.138 32.000 0.00 0.00 0.00 1.52
3301 4372 6.449635 AGATGAACAAACACAAGTGCTTAA 57.550 33.333 0.00 0.00 0.00 1.85
3302 4373 6.449635 AAGATGAACAAACACAAGTGCTTA 57.550 33.333 0.00 0.00 0.00 3.09
3306 4377 6.473455 GGAGAAAAGATGAACAAACACAAGTG 59.527 38.462 0.00 0.00 0.00 3.16
3322 4393 7.061054 TCGTCAGAGGATATAAGGAGAAAAGA 58.939 38.462 0.00 0.00 0.00 2.52
3330 4402 8.361139 AGTTTATGTTCGTCAGAGGATATAAGG 58.639 37.037 0.00 0.00 0.00 2.69
3331 4403 9.751542 AAGTTTATGTTCGTCAGAGGATATAAG 57.248 33.333 0.00 0.00 0.00 1.73
3342 4414 5.350365 GCATGGTAGAAGTTTATGTTCGTCA 59.650 40.000 0.00 0.00 0.00 4.35
3362 4434 2.419673 TCAGGCTATCGTTTTGTGCATG 59.580 45.455 0.00 0.00 36.87 4.06
3363 4437 2.710377 TCAGGCTATCGTTTTGTGCAT 58.290 42.857 0.00 0.00 0.00 3.96
3366 4440 3.498397 ACAGTTCAGGCTATCGTTTTGTG 59.502 43.478 0.00 0.00 0.00 3.33
3373 4447 5.005779 GTGTATTTCACAGTTCAGGCTATCG 59.994 44.000 0.00 0.00 45.51 2.92
3412 4486 9.131791 GGACAGTACAATGGTTTATGGAATAAT 57.868 33.333 0.00 0.00 38.83 1.28
3416 4490 5.882040 TGGACAGTACAATGGTTTATGGAA 58.118 37.500 0.00 0.00 0.00 3.53
3418 4492 6.582677 TTTGGACAGTACAATGGTTTATGG 57.417 37.500 0.00 0.00 0.00 2.74
3420 4494 7.450014 TCACATTTGGACAGTACAATGGTTTAT 59.550 33.333 0.00 0.00 0.00 1.40
3423 4498 5.136828 TCACATTTGGACAGTACAATGGTT 58.863 37.500 0.00 0.00 0.00 3.67
3451 4526 6.385759 TCAACATATGCTAGAGGACCCTTTTA 59.614 38.462 1.58 0.00 0.00 1.52
3455 4530 3.643792 GTCAACATATGCTAGAGGACCCT 59.356 47.826 1.58 0.00 0.00 4.34
3457 4532 4.342378 TCTGTCAACATATGCTAGAGGACC 59.658 45.833 1.58 0.00 0.00 4.46
3458 4533 5.068460 AGTCTGTCAACATATGCTAGAGGAC 59.932 44.000 1.58 9.24 0.00 3.85
3487 4562 3.863142 AAGGATTGATGCACTTTCAGC 57.137 42.857 0.00 0.00 0.00 4.26
3502 4577 6.718454 CCTCCATTTCATGCTATTACAAGGAT 59.282 38.462 0.00 0.00 0.00 3.24
3503 4578 6.064060 CCTCCATTTCATGCTATTACAAGGA 58.936 40.000 0.00 0.00 0.00 3.36
3521 4596 0.330604 AGCATCACAAGTGCCTCCAT 59.669 50.000 0.00 0.00 43.50 3.41
3524 4599 2.704572 ACTTAGCATCACAAGTGCCTC 58.295 47.619 0.00 0.00 43.50 4.70
3528 4603 6.486253 ACAACATACTTAGCATCACAAGTG 57.514 37.500 0.00 0.00 35.79 3.16
3529 4604 6.149474 GGAACAACATACTTAGCATCACAAGT 59.851 38.462 0.00 0.00 38.50 3.16
3535 4610 9.937175 GAATTAAGGAACAACATACTTAGCATC 57.063 33.333 0.00 0.00 0.00 3.91
3543 4618 6.730960 TGTCGGAATTAAGGAACAACATAC 57.269 37.500 0.00 0.00 0.00 2.39
3544 4619 7.931578 AATGTCGGAATTAAGGAACAACATA 57.068 32.000 0.00 0.00 0.00 2.29
3545 4620 6.834168 AATGTCGGAATTAAGGAACAACAT 57.166 33.333 0.00 0.00 0.00 2.71
3546 4621 6.566942 CGAAATGTCGGAATTAAGGAACAACA 60.567 38.462 0.00 0.00 43.81 3.33
3584 4659 7.736893 AGTTGTTCTTAGTGGTCACTTTATCT 58.263 34.615 9.02 0.00 42.54 1.98
3709 4785 3.960571 AGTTGATCTAAGGCAGTTGCAT 58.039 40.909 6.43 0.00 44.36 3.96
3829 4905 1.672030 CCATTGCGAGGTGACAGCA 60.672 57.895 7.50 0.00 42.93 4.41
4059 5135 4.349503 AAGATGCCGGCCTGCACA 62.350 61.111 25.15 3.54 45.48 4.57
4181 5257 2.835705 CGTCGTCCGAGCTGCCTAT 61.836 63.158 0.00 0.00 39.56 2.57
4440 5524 1.353022 AGAAAACATTCGCCCCTGGTA 59.647 47.619 0.00 0.00 0.00 3.25
4441 5525 0.112412 AGAAAACATTCGCCCCTGGT 59.888 50.000 0.00 0.00 0.00 4.00
4467 5551 2.666508 CTCGTCCAACGTCCAATTACAG 59.333 50.000 0.00 0.00 43.14 2.74
4544 5628 2.433436 GGCTTTGGTTATCTCACCGTT 58.567 47.619 0.00 0.00 40.09 4.44
4583 5667 2.827322 TGCTGCCTTTTACATGCTGAAT 59.173 40.909 0.00 0.00 0.00 2.57
4613 5697 9.357652 TGCATTTTGATTCTAGCAGTAAAAATC 57.642 29.630 0.00 0.00 0.00 2.17
4615 5699 7.598493 GGTGCATTTTGATTCTAGCAGTAAAAA 59.402 33.333 0.00 0.00 32.03 1.94
4616 5700 7.090173 GGTGCATTTTGATTCTAGCAGTAAAA 58.910 34.615 0.00 0.00 32.03 1.52
4623 5707 2.101415 GGGGGTGCATTTTGATTCTAGC 59.899 50.000 0.00 0.00 0.00 3.42
4626 5710 1.901833 GTGGGGGTGCATTTTGATTCT 59.098 47.619 0.00 0.00 0.00 2.40
4640 5724 2.499693 ACTTCTTTTGTTGTTGTGGGGG 59.500 45.455 0.00 0.00 0.00 5.40
4653 5737 9.561069 CTATAATACACTGGGCATACTTCTTTT 57.439 33.333 0.00 0.00 0.00 2.27
4686 5770 6.811665 TGTTTCTCCAAGTCATCATTAGTACG 59.188 38.462 0.00 0.00 0.00 3.67
4693 5777 5.936956 GTCTTCTGTTTCTCCAAGTCATCAT 59.063 40.000 0.00 0.00 0.00 2.45
4694 5778 5.163311 TGTCTTCTGTTTCTCCAAGTCATCA 60.163 40.000 0.00 0.00 0.00 3.07
4712 5806 2.977405 AGCGTTTCTGCAATGTCTTC 57.023 45.000 0.00 0.00 37.31 2.87
4718 5812 5.390991 GCTAAGTCTAAAGCGTTTCTGCAAT 60.391 40.000 0.00 0.00 37.31 3.56
4732 5826 8.621532 ATCACAAAAGATGTTGCTAAGTCTAA 57.378 30.769 0.00 0.00 41.46 2.10
4735 5863 9.922305 GTATATCACAAAAGATGTTGCTAAGTC 57.078 33.333 0.00 0.00 41.46 3.01
4740 5868 7.341805 AGGAGTATATCACAAAAGATGTTGCT 58.658 34.615 0.00 0.00 41.46 3.91
4743 5871 7.495934 CGGAAGGAGTATATCACAAAAGATGTT 59.504 37.037 0.00 0.00 41.46 2.71
4760 5888 4.961099 AGGCTAAATTAGTACGGAAGGAGT 59.039 41.667 1.68 0.00 0.00 3.85
4761 5889 5.532664 AGGCTAAATTAGTACGGAAGGAG 57.467 43.478 1.68 0.00 0.00 3.69
4763 5891 8.496707 TTTTTAGGCTAAATTAGTACGGAAGG 57.503 34.615 19.65 0.00 0.00 3.46
4786 5914 8.422566 TCTTCCCACCAAAATATAAAACGTTTT 58.577 29.630 27.65 27.65 0.00 2.43
4787 5915 7.953752 TCTTCCCACCAAAATATAAAACGTTT 58.046 30.769 7.96 7.96 0.00 3.60
4789 5917 6.152154 CCTCTTCCCACCAAAATATAAAACGT 59.848 38.462 0.00 0.00 0.00 3.99
4790 5918 6.405397 CCCTCTTCCCACCAAAATATAAAACG 60.405 42.308 0.00 0.00 0.00 3.60
4791 5919 6.127168 CCCCTCTTCCCACCAAAATATAAAAC 60.127 42.308 0.00 0.00 0.00 2.43
4792 5920 5.961421 CCCCTCTTCCCACCAAAATATAAAA 59.039 40.000 0.00 0.00 0.00 1.52
4793 5921 5.524535 CCCCTCTTCCCACCAAAATATAAA 58.475 41.667 0.00 0.00 0.00 1.40
4794 5922 4.078863 CCCCCTCTTCCCACCAAAATATAA 60.079 45.833 0.00 0.00 0.00 0.98
4795 5923 3.465588 CCCCCTCTTCCCACCAAAATATA 59.534 47.826 0.00 0.00 0.00 0.86
4796 5924 2.247372 CCCCCTCTTCCCACCAAAATAT 59.753 50.000 0.00 0.00 0.00 1.28
4797 5925 1.643811 CCCCCTCTTCCCACCAAAATA 59.356 52.381 0.00 0.00 0.00 1.40
4799 5927 0.703056 TCCCCCTCTTCCCACCAAAA 60.703 55.000 0.00 0.00 0.00 2.44
4800 5928 0.703056 TTCCCCCTCTTCCCACCAAA 60.703 55.000 0.00 0.00 0.00 3.28
4801 5929 1.072538 TTCCCCCTCTTCCCACCAA 60.073 57.895 0.00 0.00 0.00 3.67
4802 5930 1.541368 CTTCCCCCTCTTCCCACCA 60.541 63.158 0.00 0.00 0.00 4.17
4803 5931 1.541620 ACTTCCCCCTCTTCCCACC 60.542 63.158 0.00 0.00 0.00 4.61
4804 5932 1.685820 CACTTCCCCCTCTTCCCAC 59.314 63.158 0.00 0.00 0.00 4.61
4832 5960 3.480133 CCTCCCACCGATCCCCAC 61.480 72.222 0.00 0.00 0.00 4.61
4860 5988 2.107141 CATCTTCTCCGGCGACCC 59.893 66.667 9.30 0.00 0.00 4.46
4873 6001 4.473520 CGCGCACCTTCCCCATCT 62.474 66.667 8.75 0.00 0.00 2.90
4914 6042 1.938016 GCACGAATGTCCACTAACCGT 60.938 52.381 0.00 0.00 0.00 4.83
4920 6048 2.047274 CCCGCACGAATGTCCACT 60.047 61.111 0.00 0.00 0.00 4.00
4932 6060 3.997397 TACAGCAACTCGCCCGCA 61.997 61.111 0.00 0.00 44.04 5.69
4943 6071 1.735198 GCTACCGCGTTGTACAGCA 60.735 57.895 10.49 0.00 0.00 4.41
4982 6112 1.225854 GAACAGAACTGCATCGCGC 60.226 57.895 0.00 0.00 42.89 6.86
4983 6113 1.057822 CGAACAGAACTGCATCGCG 59.942 57.895 0.00 0.00 36.77 5.87
4984 6114 1.421485 CCGAACAGAACTGCATCGC 59.579 57.895 18.41 0.00 39.98 4.58
4985 6115 1.421485 GCCGAACAGAACTGCATCG 59.579 57.895 17.48 17.48 40.57 3.84
4986 6116 1.421485 CGCCGAACAGAACTGCATC 59.579 57.895 1.46 0.73 0.00 3.91
4987 6117 2.680913 GCGCCGAACAGAACTGCAT 61.681 57.895 0.00 0.00 0.00 3.96
4988 6118 3.345808 GCGCCGAACAGAACTGCA 61.346 61.111 0.00 0.00 0.00 4.41
4989 6119 4.430423 CGCGCCGAACAGAACTGC 62.430 66.667 0.00 0.00 0.00 4.40
4990 6120 3.036084 ACGCGCCGAACAGAACTG 61.036 61.111 5.73 0.00 0.00 3.16
4993 6123 4.287781 TCCACGCGCCGAACAGAA 62.288 61.111 5.73 0.00 0.00 3.02
4998 6128 3.583276 AATCACTCCACGCGCCGAA 62.583 57.895 5.73 0.00 0.00 4.30
5005 6135 3.845775 CGCACATTAAAAATCACTCCACG 59.154 43.478 0.00 0.00 0.00 4.94
5009 6139 3.297979 CACGCGCACATTAAAAATCACTC 59.702 43.478 5.73 0.00 0.00 3.51
5014 6144 6.507771 GCAATAATCACGCGCACATTAAAAAT 60.508 34.615 5.73 0.00 0.00 1.82
5022 6152 1.060151 CGCAATAATCACGCGCACA 59.940 52.632 5.73 0.00 42.79 4.57
5028 6158 1.368019 CAGGCGCGCAATAATCACG 60.368 57.895 34.42 5.64 0.00 4.35
5059 6189 0.947180 TTTAGCGTGCCCGACTGAAC 60.947 55.000 0.00 0.00 35.63 3.18
5063 6193 1.574702 GCTTTTTAGCGTGCCCGACT 61.575 55.000 0.00 0.00 35.63 4.18
5065 6195 2.329614 GGCTTTTTAGCGTGCCCGA 61.330 57.895 0.00 0.00 39.49 5.14
5068 6198 0.318360 AAACGGCTTTTTAGCGTGCC 60.318 50.000 0.00 0.00 41.76 5.01
5071 6201 3.368495 CTGAAAAACGGCTTTTTAGCGT 58.632 40.909 1.87 0.00 39.28 5.07
5078 6208 1.299850 GCGCCTGAAAAACGGCTTT 60.300 52.632 0.00 0.00 44.11 3.51
5098 6228 5.294306 TCTCCAAGATGCGCTAAATAAGTTG 59.706 40.000 9.73 1.17 0.00 3.16
5099 6229 5.428253 TCTCCAAGATGCGCTAAATAAGTT 58.572 37.500 9.73 0.00 0.00 2.66
5129 6261 5.640357 CACCAAGCCGTCTTGTTATTACTTA 59.360 40.000 5.37 0.00 46.33 2.24
5131 6263 4.000988 CACCAAGCCGTCTTGTTATTACT 58.999 43.478 5.37 0.00 46.33 2.24
5132 6264 3.126343 CCACCAAGCCGTCTTGTTATTAC 59.874 47.826 5.37 0.00 46.33 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.