Multiple sequence alignment - TraesCS5B01G331300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G331300 chr5B 100.000 6842 0 0 1 6842 515573501 515580342 0.000000e+00 12635
1 TraesCS5B01G331300 chr5A 95.516 3546 108 17 3323 6842 540283186 540286706 0.000000e+00 5620
2 TraesCS5B01G331300 chr5A 93.840 3182 92 33 224 3338 540280029 540283173 0.000000e+00 4695
3 TraesCS5B01G331300 chr5A 92.414 145 9 2 1 145 640161652 640161794 8.990000e-49 206
4 TraesCS5B01G331300 chr5D 95.596 2929 65 16 435 3338 425999527 426002416 0.000000e+00 4636
5 TraesCS5B01G331300 chr5D 96.626 2193 40 11 3323 5486 426002429 426004616 0.000000e+00 3609
6 TraesCS5B01G331300 chr5D 96.719 1219 23 4 5640 6842 426004898 426006115 0.000000e+00 2013
7 TraesCS5B01G331300 chr5D 94.203 138 8 0 1 138 358149983 358149846 1.930000e-50 211
8 TraesCS5B01G331300 chr7B 93.793 145 8 1 1 145 603128657 603128800 4.160000e-52 217
9 TraesCS5B01G331300 chr3A 94.203 138 8 0 1 138 460185385 460185522 1.930000e-50 211
10 TraesCS5B01G331300 chr6B 93.571 140 9 0 1 140 530155046 530154907 6.950000e-50 209
11 TraesCS5B01G331300 chr1B 93.571 140 9 0 1 140 654487333 654487472 6.950000e-50 209
12 TraesCS5B01G331300 chr4A 92.466 146 10 1 1 145 380295690 380295835 2.500000e-49 207
13 TraesCS5B01G331300 chr3D 93.478 138 9 0 1 138 197352185 197352322 8.990000e-49 206
14 TraesCS5B01G331300 chr3D 92.414 145 10 1 1 145 416346957 416347100 8.990000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G331300 chr5B 515573501 515580342 6841 False 12635.000000 12635 100.000000 1 6842 1 chr5B.!!$F1 6841
1 TraesCS5B01G331300 chr5A 540280029 540286706 6677 False 5157.500000 5620 94.678000 224 6842 2 chr5A.!!$F2 6618
2 TraesCS5B01G331300 chr5D 425999527 426006115 6588 False 3419.333333 4636 96.313667 435 6842 3 chr5D.!!$F1 6407

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 192 0.037326 CTCGCATACACACCACCAGT 60.037 55.000 0.00 0.00 0.00 4.00 F
382 388 0.390603 TATGGTTCCTTGACACGGCG 60.391 55.000 4.80 4.80 0.00 6.46 F
440 446 0.637743 GGGGAGAAGACCTAGGGACT 59.362 60.000 14.81 9.31 46.37 3.85 F
1550 1614 0.681887 TGTGGCCAGATGCAGATTGG 60.682 55.000 5.11 9.02 43.89 3.16 F
2275 2357 0.039165 GCTTTTCTGGAAACCCTGCG 60.039 55.000 0.00 0.00 0.00 5.18 F
2571 2653 1.546476 TGTTGCACCCGTCAACTTTTT 59.454 42.857 7.28 0.00 43.00 1.94 F
3453 3564 3.845781 ATCATTCGAGCTATTGGGTGT 57.154 42.857 0.00 0.00 0.00 4.16 F
4924 5059 0.107848 CCTGGTACAAGGTAAGCCGG 60.108 60.000 8.31 0.00 38.70 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 1799 0.036732 CTACCAGGCTCTTGCAACCA 59.963 55.000 7.27 0.0 41.91 3.67 R
1759 1835 4.322049 CGGTCATCTGTCTAAACTCTTGGT 60.322 45.833 0.00 0.0 0.00 3.67 R
2232 2314 5.468746 CGGTTCAACTTTTACAGGATCTCAA 59.531 40.000 0.00 0.0 0.00 3.02 R
3452 3563 0.996583 TTCCCAACCTCATACCCCAC 59.003 55.000 0.00 0.0 0.00 4.61 R
3453 3564 0.996583 GTTCCCAACCTCATACCCCA 59.003 55.000 0.00 0.0 0.00 4.96 R
3474 3585 1.475280 TGCAGAAATGATGGAAGCAGC 59.525 47.619 0.00 0.0 32.93 5.25 R
5391 5534 0.947244 CGTCCCATGGCTTTATCTGC 59.053 55.000 6.09 0.0 0.00 4.26 R
5917 6188 0.029300 ACAAGCGACACACAATGCAC 59.971 50.000 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.107654 AGCCGGACTTAAGGTGATGC 60.108 55.000 5.05 3.05 0.00 3.91
20 21 0.392461 GCCGGACTTAAGGTGATGCA 60.392 55.000 5.05 0.00 0.00 3.96
21 22 1.948611 GCCGGACTTAAGGTGATGCAA 60.949 52.381 5.05 0.00 0.00 4.08
22 23 2.009774 CCGGACTTAAGGTGATGCAAG 58.990 52.381 7.53 0.00 0.00 4.01
23 24 2.354704 CCGGACTTAAGGTGATGCAAGA 60.355 50.000 7.53 0.00 0.00 3.02
24 25 3.334691 CGGACTTAAGGTGATGCAAGAA 58.665 45.455 7.53 0.00 0.00 2.52
25 26 3.372206 CGGACTTAAGGTGATGCAAGAAG 59.628 47.826 7.53 0.00 0.00 2.85
26 27 3.691609 GGACTTAAGGTGATGCAAGAAGG 59.308 47.826 7.53 0.00 0.00 3.46
27 28 3.690460 ACTTAAGGTGATGCAAGAAGGG 58.310 45.455 7.53 0.00 0.00 3.95
28 29 2.806945 TAAGGTGATGCAAGAAGGGG 57.193 50.000 0.00 0.00 0.00 4.79
29 30 0.040204 AAGGTGATGCAAGAAGGGGG 59.960 55.000 0.00 0.00 0.00 5.40
45 46 2.294449 GGGGGCAATAATCCTCTTCC 57.706 55.000 0.00 0.00 0.00 3.46
46 47 1.783365 GGGGGCAATAATCCTCTTCCT 59.217 52.381 0.00 0.00 0.00 3.36
47 48 2.177888 GGGGGCAATAATCCTCTTCCTT 59.822 50.000 0.00 0.00 0.00 3.36
48 49 3.374208 GGGGGCAATAATCCTCTTCCTTT 60.374 47.826 0.00 0.00 0.00 3.11
49 50 4.141018 GGGGGCAATAATCCTCTTCCTTTA 60.141 45.833 0.00 0.00 0.00 1.85
50 51 4.827835 GGGGCAATAATCCTCTTCCTTTAC 59.172 45.833 0.00 0.00 0.00 2.01
51 52 5.399152 GGGGCAATAATCCTCTTCCTTTACT 60.399 44.000 0.00 0.00 0.00 2.24
52 53 6.129874 GGGCAATAATCCTCTTCCTTTACTT 58.870 40.000 0.00 0.00 0.00 2.24
53 54 6.607600 GGGCAATAATCCTCTTCCTTTACTTT 59.392 38.462 0.00 0.00 0.00 2.66
54 55 7.124298 GGGCAATAATCCTCTTCCTTTACTTTT 59.876 37.037 0.00 0.00 0.00 2.27
55 56 8.531982 GGCAATAATCCTCTTCCTTTACTTTTT 58.468 33.333 0.00 0.00 0.00 1.94
71 72 1.616159 TTTTTGCCCTTCTTCTCCCG 58.384 50.000 0.00 0.00 0.00 5.14
72 73 0.893727 TTTTGCCCTTCTTCTCCCGC 60.894 55.000 0.00 0.00 0.00 6.13
73 74 3.605749 TTGCCCTTCTTCTCCCGCG 62.606 63.158 0.00 0.00 0.00 6.46
75 76 4.840005 CCCTTCTTCTCCCGCGCC 62.840 72.222 0.00 0.00 0.00 6.53
76 77 3.775654 CCTTCTTCTCCCGCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
77 78 2.202810 CTTCTTCTCCCGCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
78 79 2.680352 TTCTTCTCCCGCGCCTCT 60.680 61.111 0.00 0.00 0.00 3.69
79 80 2.897641 CTTCTTCTCCCGCGCCTCTG 62.898 65.000 0.00 0.00 0.00 3.35
80 81 3.764466 CTTCTCCCGCGCCTCTGT 61.764 66.667 0.00 0.00 0.00 3.41
81 82 3.708220 CTTCTCCCGCGCCTCTGTC 62.708 68.421 0.00 0.00 0.00 3.51
82 83 4.742649 TCTCCCGCGCCTCTGTCT 62.743 66.667 0.00 0.00 0.00 3.41
83 84 4.200283 CTCCCGCGCCTCTGTCTC 62.200 72.222 0.00 0.00 0.00 3.36
87 88 4.838486 CGCGCCTCTGTCTCCGTC 62.838 72.222 0.00 0.00 0.00 4.79
88 89 3.444805 GCGCCTCTGTCTCCGTCT 61.445 66.667 0.00 0.00 0.00 4.18
89 90 2.795297 CGCCTCTGTCTCCGTCTC 59.205 66.667 0.00 0.00 0.00 3.36
90 91 1.747367 CGCCTCTGTCTCCGTCTCT 60.747 63.158 0.00 0.00 0.00 3.10
91 92 1.806568 GCCTCTGTCTCCGTCTCTG 59.193 63.158 0.00 0.00 0.00 3.35
92 93 0.963355 GCCTCTGTCTCCGTCTCTGT 60.963 60.000 0.00 0.00 0.00 3.41
93 94 1.091537 CCTCTGTCTCCGTCTCTGTC 58.908 60.000 0.00 0.00 0.00 3.51
94 95 1.339631 CCTCTGTCTCCGTCTCTGTCT 60.340 57.143 0.00 0.00 0.00 3.41
95 96 2.006888 CTCTGTCTCCGTCTCTGTCTC 58.993 57.143 0.00 0.00 0.00 3.36
96 97 1.091537 CTGTCTCCGTCTCTGTCTCC 58.908 60.000 0.00 0.00 0.00 3.71
97 98 0.693622 TGTCTCCGTCTCTGTCTCCT 59.306 55.000 0.00 0.00 0.00 3.69
98 99 1.074084 TGTCTCCGTCTCTGTCTCCTT 59.926 52.381 0.00 0.00 0.00 3.36
99 100 2.164338 GTCTCCGTCTCTGTCTCCTTT 58.836 52.381 0.00 0.00 0.00 3.11
100 101 2.094957 GTCTCCGTCTCTGTCTCCTTTG 60.095 54.545 0.00 0.00 0.00 2.77
101 102 2.163509 CTCCGTCTCTGTCTCCTTTGA 58.836 52.381 0.00 0.00 0.00 2.69
102 103 1.887198 TCCGTCTCTGTCTCCTTTGAC 59.113 52.381 0.00 0.00 37.47 3.18
103 104 1.889829 CCGTCTCTGTCTCCTTTGACT 59.110 52.381 0.00 0.00 37.79 3.41
104 105 2.297597 CCGTCTCTGTCTCCTTTGACTT 59.702 50.000 0.00 0.00 37.79 3.01
105 106 3.243907 CCGTCTCTGTCTCCTTTGACTTT 60.244 47.826 0.00 0.00 37.79 2.66
106 107 4.372656 CGTCTCTGTCTCCTTTGACTTTT 58.627 43.478 0.00 0.00 37.79 2.27
107 108 4.811557 CGTCTCTGTCTCCTTTGACTTTTT 59.188 41.667 0.00 0.00 37.79 1.94
108 109 5.983720 CGTCTCTGTCTCCTTTGACTTTTTA 59.016 40.000 0.00 0.00 37.79 1.52
109 110 6.074249 CGTCTCTGTCTCCTTTGACTTTTTAC 60.074 42.308 0.00 0.00 37.79 2.01
110 111 5.983720 TCTCTGTCTCCTTTGACTTTTTACG 59.016 40.000 0.00 0.00 37.79 3.18
111 112 5.054477 TCTGTCTCCTTTGACTTTTTACGG 58.946 41.667 0.00 0.00 37.79 4.02
112 113 4.131596 TGTCTCCTTTGACTTTTTACGGG 58.868 43.478 0.00 0.00 37.79 5.28
113 114 3.501062 GTCTCCTTTGACTTTTTACGGGG 59.499 47.826 0.00 0.00 34.39 5.73
114 115 2.228103 CTCCTTTGACTTTTTACGGGGC 59.772 50.000 0.00 0.00 0.00 5.80
115 116 1.068816 CCTTTGACTTTTTACGGGGCG 60.069 52.381 0.00 0.00 0.00 6.13
116 117 1.874872 CTTTGACTTTTTACGGGGCGA 59.125 47.619 0.00 0.00 0.00 5.54
117 118 1.228533 TTGACTTTTTACGGGGCGAC 58.771 50.000 0.00 0.00 0.00 5.19
118 119 0.106335 TGACTTTTTACGGGGCGACA 59.894 50.000 0.00 0.00 0.00 4.35
119 120 1.270947 TGACTTTTTACGGGGCGACAT 60.271 47.619 0.00 0.00 0.00 3.06
120 121 1.395954 GACTTTTTACGGGGCGACATC 59.604 52.381 0.00 0.00 0.00 3.06
121 122 1.002773 ACTTTTTACGGGGCGACATCT 59.997 47.619 0.00 0.00 0.00 2.90
122 123 1.396996 CTTTTTACGGGGCGACATCTG 59.603 52.381 0.00 0.00 0.00 2.90
123 124 1.022451 TTTTACGGGGCGACATCTGC 61.022 55.000 0.00 0.00 0.00 4.26
124 125 2.173758 TTTACGGGGCGACATCTGCA 62.174 55.000 0.00 0.00 0.00 4.41
125 126 2.173758 TTACGGGGCGACATCTGCAA 62.174 55.000 0.00 0.00 0.00 4.08
126 127 2.173758 TACGGGGCGACATCTGCAAA 62.174 55.000 0.00 0.00 0.00 3.68
127 128 2.331893 CGGGGCGACATCTGCAAAA 61.332 57.895 0.00 0.00 0.00 2.44
128 129 1.212751 GGGGCGACATCTGCAAAAC 59.787 57.895 0.00 0.00 0.00 2.43
129 130 1.244019 GGGGCGACATCTGCAAAACT 61.244 55.000 0.00 0.00 0.00 2.66
130 131 0.109597 GGGCGACATCTGCAAAACTG 60.110 55.000 0.00 0.00 0.00 3.16
131 132 0.730494 GGCGACATCTGCAAAACTGC 60.730 55.000 0.00 0.00 0.00 4.40
132 133 0.730494 GCGACATCTGCAAAACTGCC 60.730 55.000 0.00 0.00 0.00 4.85
133 134 0.109597 CGACATCTGCAAAACTGCCC 60.110 55.000 0.00 0.00 0.00 5.36
134 135 1.251251 GACATCTGCAAAACTGCCCT 58.749 50.000 0.00 0.00 0.00 5.19
135 136 0.963962 ACATCTGCAAAACTGCCCTG 59.036 50.000 0.00 0.00 0.00 4.45
136 137 1.250328 CATCTGCAAAACTGCCCTGA 58.750 50.000 0.00 0.00 0.00 3.86
137 138 1.822990 CATCTGCAAAACTGCCCTGAT 59.177 47.619 0.00 0.00 0.00 2.90
138 139 1.538047 TCTGCAAAACTGCCCTGATC 58.462 50.000 0.00 0.00 0.00 2.92
139 140 1.074405 TCTGCAAAACTGCCCTGATCT 59.926 47.619 0.00 0.00 0.00 2.75
140 141 1.201647 CTGCAAAACTGCCCTGATCTG 59.798 52.381 0.00 0.00 0.00 2.90
141 142 0.108945 GCAAAACTGCCCTGATCTGC 60.109 55.000 0.00 0.00 0.00 4.26
142 143 0.529378 CAAAACTGCCCTGATCTGCC 59.471 55.000 0.00 0.00 0.00 4.85
143 144 0.112995 AAAACTGCCCTGATCTGCCA 59.887 50.000 0.00 0.00 0.00 4.92
144 145 0.112995 AAACTGCCCTGATCTGCCAA 59.887 50.000 0.00 0.00 0.00 4.52
145 146 0.323178 AACTGCCCTGATCTGCCAAG 60.323 55.000 0.00 0.00 0.00 3.61
146 147 1.203441 ACTGCCCTGATCTGCCAAGA 61.203 55.000 0.00 0.00 36.69 3.02
147 148 0.183014 CTGCCCTGATCTGCCAAGAT 59.817 55.000 0.00 0.00 46.23 2.40
148 149 0.106868 TGCCCTGATCTGCCAAGATG 60.107 55.000 0.00 0.00 43.48 2.90
149 150 0.106819 GCCCTGATCTGCCAAGATGT 60.107 55.000 0.00 0.00 43.48 3.06
150 151 1.964552 CCCTGATCTGCCAAGATGTC 58.035 55.000 0.00 0.00 43.48 3.06
151 152 1.579698 CCTGATCTGCCAAGATGTCG 58.420 55.000 0.00 0.00 43.48 4.35
152 153 1.134580 CCTGATCTGCCAAGATGTCGT 60.135 52.381 0.00 0.00 43.48 4.34
153 154 2.625737 CTGATCTGCCAAGATGTCGTT 58.374 47.619 0.00 0.00 43.48 3.85
154 155 2.349590 TGATCTGCCAAGATGTCGTTG 58.650 47.619 0.00 0.00 43.48 4.10
155 156 2.289631 TGATCTGCCAAGATGTCGTTGT 60.290 45.455 0.00 0.00 43.48 3.32
156 157 2.254546 TCTGCCAAGATGTCGTTGTT 57.745 45.000 0.00 0.00 0.00 2.83
157 158 3.394674 TCTGCCAAGATGTCGTTGTTA 57.605 42.857 0.00 0.00 0.00 2.41
158 159 3.937814 TCTGCCAAGATGTCGTTGTTAT 58.062 40.909 0.00 0.00 0.00 1.89
159 160 3.932710 TCTGCCAAGATGTCGTTGTTATC 59.067 43.478 0.00 0.00 0.00 1.75
160 161 3.935203 CTGCCAAGATGTCGTTGTTATCT 59.065 43.478 0.00 0.00 32.80 1.98
161 162 4.323417 TGCCAAGATGTCGTTGTTATCTT 58.677 39.130 0.00 0.00 40.70 2.40
162 163 4.391830 TGCCAAGATGTCGTTGTTATCTTC 59.608 41.667 0.00 0.00 38.68 2.87
163 164 4.391830 GCCAAGATGTCGTTGTTATCTTCA 59.608 41.667 0.00 0.00 38.68 3.02
164 165 5.065218 GCCAAGATGTCGTTGTTATCTTCAT 59.935 40.000 0.00 0.00 38.68 2.57
165 166 6.481134 CCAAGATGTCGTTGTTATCTTCATG 58.519 40.000 0.00 0.00 38.68 3.07
166 167 6.313658 CCAAGATGTCGTTGTTATCTTCATGA 59.686 38.462 0.00 0.00 38.68 3.07
167 168 6.893958 AGATGTCGTTGTTATCTTCATGAC 57.106 37.500 0.00 0.00 0.00 3.06
168 169 5.516696 AGATGTCGTTGTTATCTTCATGACG 59.483 40.000 0.00 0.00 0.00 4.35
169 170 3.924073 TGTCGTTGTTATCTTCATGACGG 59.076 43.478 0.00 0.00 0.00 4.79
170 171 3.924686 GTCGTTGTTATCTTCATGACGGT 59.075 43.478 0.00 0.00 0.00 4.83
171 172 3.924073 TCGTTGTTATCTTCATGACGGTG 59.076 43.478 0.00 0.00 0.00 4.94
172 173 3.483574 CGTTGTTATCTTCATGACGGTGC 60.484 47.826 0.00 0.00 0.00 5.01
173 174 3.610040 TGTTATCTTCATGACGGTGCT 57.390 42.857 0.00 0.00 0.00 4.40
174 175 3.521560 TGTTATCTTCATGACGGTGCTC 58.478 45.455 0.00 0.00 0.00 4.26
175 176 2.492019 TATCTTCATGACGGTGCTCG 57.508 50.000 0.00 0.00 45.88 5.03
176 177 0.807667 ATCTTCATGACGGTGCTCGC 60.808 55.000 0.00 0.00 43.89 5.03
177 178 1.737735 CTTCATGACGGTGCTCGCA 60.738 57.895 0.00 0.00 43.89 5.10
178 179 1.079197 TTCATGACGGTGCTCGCAT 60.079 52.632 0.00 3.07 43.89 4.73
179 180 0.174617 TTCATGACGGTGCTCGCATA 59.825 50.000 0.00 0.00 43.89 3.14
180 181 0.527600 TCATGACGGTGCTCGCATAC 60.528 55.000 0.00 0.00 43.89 2.39
181 182 0.805711 CATGACGGTGCTCGCATACA 60.806 55.000 0.00 0.00 43.89 2.29
182 183 0.806102 ATGACGGTGCTCGCATACAC 60.806 55.000 0.00 0.00 43.89 2.90
183 184 1.445410 GACGGTGCTCGCATACACA 60.445 57.895 0.00 0.00 43.89 3.72
184 185 1.683790 GACGGTGCTCGCATACACAC 61.684 60.000 0.00 0.00 43.89 3.82
185 186 3.486263 GGTGCTCGCATACACACC 58.514 61.111 0.00 0.00 45.22 4.16
186 187 4.277239 GTGCTCGCATACACACCA 57.723 55.556 0.00 0.00 36.77 4.17
187 188 1.787847 GTGCTCGCATACACACCAC 59.212 57.895 0.00 0.00 36.77 4.16
188 189 1.375396 TGCTCGCATACACACCACC 60.375 57.895 0.00 0.00 0.00 4.61
189 190 1.375396 GCTCGCATACACACCACCA 60.375 57.895 0.00 0.00 0.00 4.17
190 191 1.361668 GCTCGCATACACACCACCAG 61.362 60.000 0.00 0.00 0.00 4.00
191 192 0.037326 CTCGCATACACACCACCAGT 60.037 55.000 0.00 0.00 0.00 4.00
192 193 0.394938 TCGCATACACACCACCAGTT 59.605 50.000 0.00 0.00 0.00 3.16
193 194 1.202710 TCGCATACACACCACCAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
194 195 2.037381 TCGCATACACACCACCAGTTTA 59.963 45.455 0.00 0.00 0.00 2.01
195 196 2.158841 CGCATACACACCACCAGTTTAC 59.841 50.000 0.00 0.00 0.00 2.01
196 197 2.486592 GCATACACACCACCAGTTTACC 59.513 50.000 0.00 0.00 0.00 2.85
197 198 2.529780 TACACACCACCAGTTTACCG 57.470 50.000 0.00 0.00 0.00 4.02
198 199 0.831966 ACACACCACCAGTTTACCGA 59.168 50.000 0.00 0.00 0.00 4.69
199 200 1.209990 ACACACCACCAGTTTACCGAA 59.790 47.619 0.00 0.00 0.00 4.30
200 201 2.158726 ACACACCACCAGTTTACCGAAT 60.159 45.455 0.00 0.00 0.00 3.34
201 202 2.225491 CACACCACCAGTTTACCGAATG 59.775 50.000 0.00 0.00 0.00 2.67
202 203 2.105134 ACACCACCAGTTTACCGAATGA 59.895 45.455 0.00 0.00 0.00 2.57
203 204 3.244770 ACACCACCAGTTTACCGAATGAT 60.245 43.478 0.00 0.00 0.00 2.45
204 205 4.020039 ACACCACCAGTTTACCGAATGATA 60.020 41.667 0.00 0.00 0.00 2.15
205 206 5.123227 CACCACCAGTTTACCGAATGATAT 58.877 41.667 0.00 0.00 0.00 1.63
206 207 5.236478 CACCACCAGTTTACCGAATGATATC 59.764 44.000 0.00 0.00 0.00 1.63
207 208 5.104693 ACCACCAGTTTACCGAATGATATCA 60.105 40.000 8.10 8.10 0.00 2.15
208 209 5.997746 CCACCAGTTTACCGAATGATATCAT 59.002 40.000 12.62 12.62 38.41 2.45
209 210 6.073058 CCACCAGTTTACCGAATGATATCATG 60.073 42.308 18.85 9.21 36.56 3.07
210 211 5.997746 ACCAGTTTACCGAATGATATCATGG 59.002 40.000 18.85 17.68 36.56 3.66
211 212 6.183361 ACCAGTTTACCGAATGATATCATGGA 60.183 38.462 22.68 5.85 36.56 3.41
212 213 6.147821 CCAGTTTACCGAATGATATCATGGAC 59.852 42.308 22.68 13.48 36.56 4.02
213 214 6.147821 CAGTTTACCGAATGATATCATGGACC 59.852 42.308 22.68 11.37 36.56 4.46
214 215 5.816955 TTACCGAATGATATCATGGACCA 57.183 39.130 22.68 0.00 36.56 4.02
215 216 4.008074 ACCGAATGATATCATGGACCAC 57.992 45.455 22.68 9.70 36.56 4.16
216 217 2.995939 CCGAATGATATCATGGACCACG 59.004 50.000 18.85 15.39 36.56 4.94
217 218 2.413112 CGAATGATATCATGGACCACGC 59.587 50.000 18.85 1.65 36.56 5.34
218 219 2.479566 ATGATATCATGGACCACGCC 57.520 50.000 17.51 0.00 34.83 5.68
219 220 1.423584 TGATATCATGGACCACGCCT 58.576 50.000 0.00 0.00 0.00 5.52
220 221 1.768275 TGATATCATGGACCACGCCTT 59.232 47.619 0.00 0.00 0.00 4.35
221 222 2.146342 GATATCATGGACCACGCCTTG 58.854 52.381 0.00 0.00 35.14 3.61
222 223 1.199615 TATCATGGACCACGCCTTGA 58.800 50.000 0.00 0.00 43.57 3.02
262 263 2.362736 TCTCAGCATGCCAATGTCTTC 58.637 47.619 15.66 0.00 36.08 2.87
282 284 4.642466 TCAATGTGTGGGGTGTGTAATA 57.358 40.909 0.00 0.00 0.00 0.98
283 285 4.328536 TCAATGTGTGGGGTGTGTAATAC 58.671 43.478 0.00 0.00 0.00 1.89
306 312 5.964477 ACCTAATACCTTGATGACAGAGGAA 59.036 40.000 8.77 0.00 34.61 3.36
331 337 5.645497 CCCAAGAATAGACCTGAAAAGTCTG 59.355 44.000 3.74 0.00 44.25 3.51
333 339 6.148480 CCAAGAATAGACCTGAAAAGTCTGTG 59.852 42.308 3.74 0.00 44.25 3.66
336 342 2.843701 AGACCTGAAAAGTCTGTGCAG 58.156 47.619 0.00 0.00 42.94 4.41
356 362 2.074576 GACCACGCTAAAGAAACCCTC 58.925 52.381 0.00 0.00 0.00 4.30
357 363 1.076332 CCACGCTAAAGAAACCCTCG 58.924 55.000 0.00 0.00 0.00 4.63
358 364 1.607251 CCACGCTAAAGAAACCCTCGT 60.607 52.381 0.00 0.00 0.00 4.18
359 365 2.140717 CACGCTAAAGAAACCCTCGTT 58.859 47.619 0.00 0.00 0.00 3.85
360 366 3.319755 CACGCTAAAGAAACCCTCGTTA 58.680 45.455 0.00 0.00 0.00 3.18
382 388 0.390603 TATGGTTCCTTGACACGGCG 60.391 55.000 4.80 4.80 0.00 6.46
383 389 3.723348 GGTTCCTTGACACGGCGC 61.723 66.667 6.90 0.00 0.00 6.53
387 393 3.055719 CCTTGACACGGCGCCATT 61.056 61.111 28.98 9.97 0.00 3.16
390 396 2.513065 CTTGACACGGCGCCATTGAC 62.513 60.000 28.98 21.93 0.00 3.18
403 409 2.208431 CCATTGACTCTGATCTTCGCC 58.792 52.381 0.00 0.00 0.00 5.54
405 411 3.464907 CATTGACTCTGATCTTCGCCAT 58.535 45.455 0.00 0.00 0.00 4.40
406 412 3.616956 TTGACTCTGATCTTCGCCATT 57.383 42.857 0.00 0.00 0.00 3.16
411 417 3.197766 ACTCTGATCTTCGCCATTACCAA 59.802 43.478 0.00 0.00 0.00 3.67
440 446 0.637743 GGGGAGAAGACCTAGGGACT 59.362 60.000 14.81 9.31 46.37 3.85
503 512 2.751436 CCAACCGGCAGACATGGG 60.751 66.667 0.00 0.00 0.00 4.00
510 519 1.303309 CGGCAGACATGGGAAATCTC 58.697 55.000 0.00 0.00 0.00 2.75
531 540 2.501128 CCGCATGACCCTGTCGAT 59.499 61.111 0.00 0.00 34.95 3.59
580 593 2.093447 CAGGCCAGTCGAATTTAGGACT 60.093 50.000 5.01 0.00 43.99 3.85
582 595 3.009143 AGGCCAGTCGAATTTAGGACTTT 59.991 43.478 5.01 0.00 41.37 2.66
599 612 7.636150 AGGACTTTGGATGAATCACTTATTG 57.364 36.000 0.00 0.00 0.00 1.90
636 649 5.410439 GCTTGGATGTGCATTTTGAAGAAAT 59.590 36.000 0.00 0.00 0.00 2.17
645 661 7.549842 TGTGCATTTTGAAGAAATAATGGGATG 59.450 33.333 0.00 0.00 0.00 3.51
681 697 7.361457 ACACGGAGAATGGAGAGAATATTTA 57.639 36.000 0.00 0.00 0.00 1.40
780 796 3.304057 GGCAGGAGTGAGAAAAACGAAAG 60.304 47.826 0.00 0.00 0.00 2.62
945 979 4.514577 CGGCCCCTCGCTAGTGTG 62.515 72.222 2.66 0.30 37.74 3.82
1143 1177 3.161067 CAGGTACTCCCTCATGATCGAT 58.839 50.000 0.00 0.00 43.86 3.59
1311 1363 2.107343 AAGGTACGCACGCACACA 59.893 55.556 0.00 0.00 0.00 3.72
1369 1433 2.676029 CGTTGCATGCACCGCAGTA 61.676 57.895 24.67 2.94 43.65 2.74
1413 1477 3.063510 TGATCAAGTTCCTCAAGCTGG 57.936 47.619 0.00 0.00 0.00 4.85
1513 1577 8.907222 AATCTGCCAAAATATGTTTCACTTTT 57.093 26.923 0.00 0.00 0.00 2.27
1515 1579 8.810652 TCTGCCAAAATATGTTTCACTTTTAC 57.189 30.769 0.00 0.00 0.00 2.01
1540 1604 9.030452 ACTTTTAATTGTAATAATGTGGCCAGA 57.970 29.630 5.11 4.74 0.00 3.86
1542 1606 9.814899 TTTTAATTGTAATAATGTGGCCAGATG 57.185 29.630 17.44 0.00 0.00 2.90
1543 1607 4.916983 TTGTAATAATGTGGCCAGATGC 57.083 40.909 17.44 0.00 40.16 3.91
1544 1608 3.895998 TGTAATAATGTGGCCAGATGCA 58.104 40.909 17.44 6.14 43.89 3.96
1545 1609 3.884693 TGTAATAATGTGGCCAGATGCAG 59.115 43.478 17.44 0.00 43.89 4.41
1546 1610 3.301794 AATAATGTGGCCAGATGCAGA 57.698 42.857 17.44 2.83 43.89 4.26
1547 1611 3.520691 ATAATGTGGCCAGATGCAGAT 57.479 42.857 17.44 2.40 43.89 2.90
1548 1612 2.154567 AATGTGGCCAGATGCAGATT 57.845 45.000 17.44 0.00 43.89 2.40
1549 1613 1.399714 ATGTGGCCAGATGCAGATTG 58.600 50.000 15.86 0.00 43.89 2.67
1550 1614 0.681887 TGTGGCCAGATGCAGATTGG 60.682 55.000 5.11 9.02 43.89 3.16
1553 1617 4.670199 CCAGATGCAGATTGGCCA 57.330 55.556 0.00 0.00 0.00 5.36
1554 1618 2.890612 CCAGATGCAGATTGGCCAA 58.109 52.632 23.00 23.00 0.00 4.52
1723 1799 5.068198 GGTAATGGCAATCAATCACTCACAT 59.932 40.000 0.00 0.00 0.00 3.21
1759 1835 5.167303 TGGTAGGTGTATGTGCATTTGTA 57.833 39.130 0.00 0.00 0.00 2.41
1901 1978 3.635373 CGTTATTCTAGCCCAGGTCAGTA 59.365 47.826 0.00 0.00 0.00 2.74
2000 2082 8.824781 CAAATTTCACAGATCGAGAATGAGTAT 58.175 33.333 0.00 0.00 0.00 2.12
2232 2314 1.343377 GGCCCCATTTGAGAAGGGAAT 60.343 52.381 0.00 0.00 45.80 3.01
2275 2357 0.039165 GCTTTTCTGGAAACCCTGCG 60.039 55.000 0.00 0.00 0.00 5.18
2307 2389 6.942576 ACAGGCTGTAGATTTGAACAACTATT 59.057 34.615 20.61 0.00 0.00 1.73
2444 2526 4.752661 TGAAAGACGAAAATAAACCCCG 57.247 40.909 0.00 0.00 0.00 5.73
2571 2653 1.546476 TGTTGCACCCGTCAACTTTTT 59.454 42.857 7.28 0.00 43.00 1.94
2879 2962 7.233348 ACTGAACATTTTGGTAGTGGAAATCAT 59.767 33.333 0.00 0.00 0.00 2.45
2880 2963 8.642935 TGAACATTTTGGTAGTGGAAATCATA 57.357 30.769 0.00 0.00 0.00 2.15
3221 3304 7.880195 GCTTCCTATGTGTTGACTGGATATTAT 59.120 37.037 0.00 0.00 0.00 1.28
3452 3563 3.879295 ACAATCATTCGAGCTATTGGGTG 59.121 43.478 15.65 0.00 34.38 4.61
3453 3564 3.845781 ATCATTCGAGCTATTGGGTGT 57.154 42.857 0.00 0.00 0.00 4.16
3474 3585 1.064685 GGGGTATGAGGTTGGGAACAG 60.065 57.143 0.00 0.00 44.54 3.16
3654 3765 3.309121 CCAACAACAATACAGGGGAGGAT 60.309 47.826 0.00 0.00 0.00 3.24
3664 3775 0.916358 AGGGGAGGATGGAACTGTGG 60.916 60.000 0.00 0.00 0.00 4.17
3678 3789 0.321653 CTGTGGTTTTCCGAGGGGAG 60.322 60.000 0.00 0.00 44.98 4.30
3709 3820 2.815647 CGAGCCGCTCAGTTTCCC 60.816 66.667 20.22 0.00 0.00 3.97
4302 4413 8.607459 CATGTCCAACTCTGTAATAATCTTGTC 58.393 37.037 0.00 0.00 0.00 3.18
4337 4448 5.124457 CAGATACCAATTGCAAGCACTAACT 59.876 40.000 4.94 0.00 0.00 2.24
4370 4481 4.494091 AAGAGACCTCATAACCACCATG 57.506 45.455 0.00 0.00 0.00 3.66
4461 4572 1.666553 GGTGTCAACCATGTCGCGA 60.667 57.895 3.71 3.71 46.75 5.87
4555 4680 0.798776 GTTGCACACGGAATCCTGAG 59.201 55.000 0.00 0.00 0.00 3.35
4724 4854 1.670811 GTACATGCTATTGCGCTTGGT 59.329 47.619 9.73 0.00 43.34 3.67
4725 4855 2.036958 ACATGCTATTGCGCTTGGTA 57.963 45.000 9.73 0.00 43.34 3.25
4739 4869 5.414454 TGCGCTTGGTATATTTGAGAAAAGT 59.586 36.000 9.73 0.00 0.00 2.66
4833 4964 1.607801 GCCAAATTGGAGGGTGAGGC 61.608 60.000 17.47 0.00 40.96 4.70
4924 5059 0.107848 CCTGGTACAAGGTAAGCCGG 60.108 60.000 8.31 0.00 38.70 6.13
4984 5124 8.190326 TCAATCTTAGTTTCCAACTCTCAGTA 57.810 34.615 0.00 0.00 41.77 2.74
5013 5153 4.391216 GTCTGTTTCATGTCATGTCAGAGG 59.609 45.833 23.87 10.69 35.87 3.69
5037 5177 4.131088 GACGAGCCAGACGGGGAC 62.131 72.222 0.00 0.00 37.04 4.46
5084 5224 8.435931 ACTTCTATGTGCAAGGGTATGATATA 57.564 34.615 0.00 0.00 0.00 0.86
5094 5234 4.147321 AGGGTATGATATACGTGAACGGT 58.853 43.478 7.86 0.00 44.95 4.83
5194 5337 2.229784 CTGCTGAACAACCCATTCCTTC 59.770 50.000 0.00 0.00 0.00 3.46
5205 5348 2.358090 CCCATTCCTTCATTGGCCTACA 60.358 50.000 3.32 0.00 0.00 2.74
5206 5349 3.364549 CCATTCCTTCATTGGCCTACAA 58.635 45.455 3.32 0.00 44.54 2.41
5263 5406 3.756933 TTAGGTACCATATTCCACGGC 57.243 47.619 15.94 0.00 0.00 5.68
5391 5534 4.680237 TCGGAGCACAACCCTGCG 62.680 66.667 0.00 0.00 44.09 5.18
5514 5657 2.351455 GAGGTAGTCTTTGCCAGCTTC 58.649 52.381 0.00 0.00 33.26 3.86
5548 5691 1.438651 GTCATGCGCCAACTTCACTA 58.561 50.000 4.18 0.00 0.00 2.74
5549 5692 1.128692 GTCATGCGCCAACTTCACTAC 59.871 52.381 4.18 0.00 0.00 2.73
5580 5723 0.620556 ACACTCCCAATGCGAAGGAT 59.379 50.000 0.00 0.00 43.72 3.24
5598 5741 4.066490 AGGATATCGTCGAGAAGGTACAG 58.934 47.826 0.00 0.00 0.00 2.74
5599 5742 3.188873 GGATATCGTCGAGAAGGTACAGG 59.811 52.174 0.00 0.00 0.00 4.00
5627 5770 2.884012 CCCCTTAACAATGCGCATCATA 59.116 45.455 25.53 13.96 34.33 2.15
5665 5936 7.615365 AGCTTATCCTGGATCACATTTTGTTTA 59.385 33.333 13.54 0.00 0.00 2.01
5789 6060 1.899437 ATCAACTGCCCCACGACGAT 61.899 55.000 0.00 0.00 0.00 3.73
5917 6188 2.713894 GGTTTCGAACTCGCGTCGG 61.714 63.158 16.16 6.39 39.60 4.79
6197 6468 6.097915 TGACCGAGTGGATAGAATAATTCC 57.902 41.667 0.00 0.00 39.21 3.01
6284 6568 8.260270 TGATTTGTACATCTCATCTTGACAAG 57.740 34.615 9.03 9.03 0.00 3.16
6285 6569 8.096414 TGATTTGTACATCTCATCTTGACAAGA 58.904 33.333 19.85 19.85 42.69 3.02
6286 6570 7.895975 TTTGTACATCTCATCTTGACAAGAG 57.104 36.000 21.78 14.07 41.61 2.85
6287 6571 6.596309 TGTACATCTCATCTTGACAAGAGT 57.404 37.500 21.78 15.13 41.61 3.24
6288 6572 6.393171 TGTACATCTCATCTTGACAAGAGTG 58.607 40.000 21.78 18.25 41.61 3.51
6289 6573 5.735285 ACATCTCATCTTGACAAGAGTGA 57.265 39.130 21.78 20.68 41.61 3.41
6290 6574 5.477510 ACATCTCATCTTGACAAGAGTGAC 58.522 41.667 21.78 0.00 41.61 3.67
6291 6575 5.011431 ACATCTCATCTTGACAAGAGTGACA 59.989 40.000 21.78 13.42 41.61 3.58
6292 6576 5.535753 TCTCATCTTGACAAGAGTGACAA 57.464 39.130 21.78 11.56 41.61 3.18
6388 6683 0.179084 ACAATGATAGTGGTCGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
6679 6975 7.793927 TGGTTTTTCAGTTTTCAGTGTTTTT 57.206 28.000 0.00 0.00 0.00 1.94
6786 7083 6.147656 CCCATTGCATAAACCTTTCTGTTTTC 59.852 38.462 0.00 0.00 39.15 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107654 GCATCACCTTAAGTCCGGCT 60.108 55.000 0.00 0.00 0.00 5.52
1 2 0.392461 TGCATCACCTTAAGTCCGGC 60.392 55.000 0.00 0.00 0.00 6.13
2 3 2.009774 CTTGCATCACCTTAAGTCCGG 58.990 52.381 0.00 0.00 0.00 5.14
3 4 2.972625 TCTTGCATCACCTTAAGTCCG 58.027 47.619 0.97 0.00 0.00 4.79
4 5 3.691609 CCTTCTTGCATCACCTTAAGTCC 59.308 47.826 0.97 0.00 0.00 3.85
5 6 3.691609 CCCTTCTTGCATCACCTTAAGTC 59.308 47.826 0.97 0.00 0.00 3.01
6 7 3.562176 CCCCTTCTTGCATCACCTTAAGT 60.562 47.826 0.97 0.00 0.00 2.24
7 8 3.019564 CCCCTTCTTGCATCACCTTAAG 58.980 50.000 0.00 0.00 0.00 1.85
8 9 2.291540 CCCCCTTCTTGCATCACCTTAA 60.292 50.000 0.00 0.00 0.00 1.85
9 10 1.284785 CCCCCTTCTTGCATCACCTTA 59.715 52.381 0.00 0.00 0.00 2.69
10 11 0.040204 CCCCCTTCTTGCATCACCTT 59.960 55.000 0.00 0.00 0.00 3.50
11 12 1.693640 CCCCCTTCTTGCATCACCT 59.306 57.895 0.00 0.00 0.00 4.00
12 13 4.344237 CCCCCTTCTTGCATCACC 57.656 61.111 0.00 0.00 0.00 4.02
26 27 1.783365 AGGAAGAGGATTATTGCCCCC 59.217 52.381 0.00 0.00 0.00 5.40
27 28 3.602205 AAGGAAGAGGATTATTGCCCC 57.398 47.619 0.00 0.00 0.00 5.80
28 29 5.696030 AGTAAAGGAAGAGGATTATTGCCC 58.304 41.667 0.00 0.00 0.00 5.36
29 30 7.646548 AAAGTAAAGGAAGAGGATTATTGCC 57.353 36.000 0.00 0.00 0.00 4.52
52 53 1.616159 CGGGAGAAGAAGGGCAAAAA 58.384 50.000 0.00 0.00 0.00 1.94
53 54 0.893727 GCGGGAGAAGAAGGGCAAAA 60.894 55.000 0.00 0.00 0.00 2.44
54 55 1.303317 GCGGGAGAAGAAGGGCAAA 60.303 57.895 0.00 0.00 0.00 3.68
55 56 2.351276 GCGGGAGAAGAAGGGCAA 59.649 61.111 0.00 0.00 0.00 4.52
56 57 4.082523 CGCGGGAGAAGAAGGGCA 62.083 66.667 0.00 0.00 0.00 5.36
58 59 4.840005 GGCGCGGGAGAAGAAGGG 62.840 72.222 8.83 0.00 0.00 3.95
59 60 3.724914 GAGGCGCGGGAGAAGAAGG 62.725 68.421 8.83 0.00 0.00 3.46
60 61 2.202810 GAGGCGCGGGAGAAGAAG 60.203 66.667 8.83 0.00 0.00 2.85
61 62 2.680352 AGAGGCGCGGGAGAAGAA 60.680 61.111 8.83 0.00 0.00 2.52
62 63 3.452786 CAGAGGCGCGGGAGAAGA 61.453 66.667 8.83 0.00 0.00 2.87
63 64 3.708220 GACAGAGGCGCGGGAGAAG 62.708 68.421 8.83 0.00 0.00 2.85
64 65 3.760035 GACAGAGGCGCGGGAGAA 61.760 66.667 8.83 0.00 0.00 2.87
65 66 4.742649 AGACAGAGGCGCGGGAGA 62.743 66.667 8.83 0.00 0.00 3.71
66 67 4.200283 GAGACAGAGGCGCGGGAG 62.200 72.222 8.83 0.00 0.00 4.30
70 71 4.838486 GACGGAGACAGAGGCGCG 62.838 72.222 0.00 0.00 0.00 6.86
71 72 3.404141 GAGACGGAGACAGAGGCGC 62.404 68.421 0.00 0.00 0.00 6.53
72 73 1.747367 AGAGACGGAGACAGAGGCG 60.747 63.158 0.00 0.00 0.00 5.52
73 74 0.963355 ACAGAGACGGAGACAGAGGC 60.963 60.000 0.00 0.00 0.00 4.70
74 75 1.091537 GACAGAGACGGAGACAGAGG 58.908 60.000 0.00 0.00 0.00 3.69
75 76 2.006888 GAGACAGAGACGGAGACAGAG 58.993 57.143 0.00 0.00 0.00 3.35
76 77 1.339247 GGAGACAGAGACGGAGACAGA 60.339 57.143 0.00 0.00 0.00 3.41
77 78 1.091537 GGAGACAGAGACGGAGACAG 58.908 60.000 0.00 0.00 0.00 3.51
78 79 0.693622 AGGAGACAGAGACGGAGACA 59.306 55.000 0.00 0.00 0.00 3.41
79 80 1.828979 AAGGAGACAGAGACGGAGAC 58.171 55.000 0.00 0.00 0.00 3.36
80 81 2.163509 CAAAGGAGACAGAGACGGAGA 58.836 52.381 0.00 0.00 0.00 3.71
81 82 2.094957 GTCAAAGGAGACAGAGACGGAG 60.095 54.545 0.00 0.00 38.40 4.63
82 83 1.887198 GTCAAAGGAGACAGAGACGGA 59.113 52.381 0.00 0.00 38.40 4.69
83 84 1.889829 AGTCAAAGGAGACAGAGACGG 59.110 52.381 0.00 0.00 40.98 4.79
84 85 3.651803 AAGTCAAAGGAGACAGAGACG 57.348 47.619 0.00 0.00 40.98 4.18
85 86 6.074249 CGTAAAAAGTCAAAGGAGACAGAGAC 60.074 42.308 0.00 0.00 40.98 3.36
86 87 5.983720 CGTAAAAAGTCAAAGGAGACAGAGA 59.016 40.000 0.00 0.00 40.98 3.10
87 88 5.177696 CCGTAAAAAGTCAAAGGAGACAGAG 59.822 44.000 0.00 0.00 40.98 3.35
88 89 5.054477 CCGTAAAAAGTCAAAGGAGACAGA 58.946 41.667 0.00 0.00 40.98 3.41
89 90 4.213482 CCCGTAAAAAGTCAAAGGAGACAG 59.787 45.833 0.00 0.00 40.98 3.51
90 91 4.131596 CCCGTAAAAAGTCAAAGGAGACA 58.868 43.478 0.00 0.00 40.98 3.41
91 92 3.501062 CCCCGTAAAAAGTCAAAGGAGAC 59.499 47.826 0.00 0.00 38.81 3.36
92 93 3.746940 CCCCGTAAAAAGTCAAAGGAGA 58.253 45.455 0.00 0.00 0.00 3.71
93 94 2.228103 GCCCCGTAAAAAGTCAAAGGAG 59.772 50.000 0.00 0.00 0.00 3.69
94 95 2.232399 GCCCCGTAAAAAGTCAAAGGA 58.768 47.619 0.00 0.00 0.00 3.36
95 96 1.068816 CGCCCCGTAAAAAGTCAAAGG 60.069 52.381 0.00 0.00 0.00 3.11
96 97 1.874872 TCGCCCCGTAAAAAGTCAAAG 59.125 47.619 0.00 0.00 0.00 2.77
97 98 1.603326 GTCGCCCCGTAAAAAGTCAAA 59.397 47.619 0.00 0.00 0.00 2.69
98 99 1.228533 GTCGCCCCGTAAAAAGTCAA 58.771 50.000 0.00 0.00 0.00 3.18
99 100 0.106335 TGTCGCCCCGTAAAAAGTCA 59.894 50.000 0.00 0.00 0.00 3.41
100 101 1.395954 GATGTCGCCCCGTAAAAAGTC 59.604 52.381 0.00 0.00 0.00 3.01
101 102 1.002773 AGATGTCGCCCCGTAAAAAGT 59.997 47.619 0.00 0.00 0.00 2.66
102 103 1.396996 CAGATGTCGCCCCGTAAAAAG 59.603 52.381 0.00 0.00 0.00 2.27
103 104 1.444836 CAGATGTCGCCCCGTAAAAA 58.555 50.000 0.00 0.00 0.00 1.94
104 105 1.022451 GCAGATGTCGCCCCGTAAAA 61.022 55.000 0.00 0.00 0.00 1.52
105 106 1.448893 GCAGATGTCGCCCCGTAAA 60.449 57.895 0.00 0.00 0.00 2.01
106 107 2.173758 TTGCAGATGTCGCCCCGTAA 62.174 55.000 0.00 0.00 0.00 3.18
107 108 2.173758 TTTGCAGATGTCGCCCCGTA 62.174 55.000 0.00 0.00 0.00 4.02
108 109 3.545124 TTTGCAGATGTCGCCCCGT 62.545 57.895 0.00 0.00 0.00 5.28
109 110 2.331893 TTTTGCAGATGTCGCCCCG 61.332 57.895 0.00 0.00 0.00 5.73
110 111 1.212751 GTTTTGCAGATGTCGCCCC 59.787 57.895 0.00 0.00 0.00 5.80
111 112 0.109597 CAGTTTTGCAGATGTCGCCC 60.110 55.000 0.00 0.00 0.00 6.13
112 113 3.389741 CAGTTTTGCAGATGTCGCC 57.610 52.632 0.00 0.00 0.00 5.54
123 124 0.529378 GGCAGATCAGGGCAGTTTTG 59.471 55.000 6.15 0.00 0.00 2.44
124 125 0.112995 TGGCAGATCAGGGCAGTTTT 59.887 50.000 9.18 0.00 35.74 2.43
125 126 0.112995 TTGGCAGATCAGGGCAGTTT 59.887 50.000 12.27 0.00 42.10 2.66
126 127 0.323178 CTTGGCAGATCAGGGCAGTT 60.323 55.000 12.27 0.00 42.10 3.16
127 128 1.203441 TCTTGGCAGATCAGGGCAGT 61.203 55.000 12.27 0.00 42.10 4.40
128 129 0.183014 ATCTTGGCAGATCAGGGCAG 59.817 55.000 12.27 8.22 42.10 4.85
129 130 0.106868 CATCTTGGCAGATCAGGGCA 60.107 55.000 9.18 9.18 37.71 5.36
130 131 0.106819 ACATCTTGGCAGATCAGGGC 60.107 55.000 0.00 0.00 37.71 5.19
131 132 1.809271 CGACATCTTGGCAGATCAGGG 60.809 57.143 0.00 0.00 37.71 4.45
132 133 1.134580 ACGACATCTTGGCAGATCAGG 60.135 52.381 0.00 0.00 37.71 3.86
133 134 2.306341 ACGACATCTTGGCAGATCAG 57.694 50.000 0.00 0.00 37.71 2.90
134 135 2.289631 ACAACGACATCTTGGCAGATCA 60.290 45.455 0.00 0.00 37.71 2.92
135 136 2.350522 ACAACGACATCTTGGCAGATC 58.649 47.619 0.00 0.00 37.71 2.75
136 137 2.479566 ACAACGACATCTTGGCAGAT 57.520 45.000 0.00 0.00 40.79 2.90
137 138 2.254546 AACAACGACATCTTGGCAGA 57.745 45.000 0.00 0.00 0.00 4.26
138 139 3.935203 AGATAACAACGACATCTTGGCAG 59.065 43.478 0.00 0.00 0.00 4.85
139 140 3.937814 AGATAACAACGACATCTTGGCA 58.062 40.909 0.00 0.00 0.00 4.92
140 141 4.391830 TGAAGATAACAACGACATCTTGGC 59.608 41.667 1.03 0.00 38.74 4.52
141 142 6.313658 TCATGAAGATAACAACGACATCTTGG 59.686 38.462 0.00 0.00 38.74 3.61
142 143 7.176075 GTCATGAAGATAACAACGACATCTTG 58.824 38.462 0.00 0.00 38.74 3.02
143 144 6.035005 CGTCATGAAGATAACAACGACATCTT 59.965 38.462 2.01 0.00 40.76 2.40
144 145 5.516696 CGTCATGAAGATAACAACGACATCT 59.483 40.000 2.01 0.00 0.00 2.90
145 146 5.276395 CCGTCATGAAGATAACAACGACATC 60.276 44.000 10.47 0.00 0.00 3.06
146 147 4.566759 CCGTCATGAAGATAACAACGACAT 59.433 41.667 10.47 0.00 0.00 3.06
147 148 3.924073 CCGTCATGAAGATAACAACGACA 59.076 43.478 10.47 0.00 0.00 4.35
148 149 3.924686 ACCGTCATGAAGATAACAACGAC 59.075 43.478 10.47 0.00 0.00 4.34
149 150 3.924073 CACCGTCATGAAGATAACAACGA 59.076 43.478 10.47 0.00 0.00 3.85
150 151 3.483574 GCACCGTCATGAAGATAACAACG 60.484 47.826 10.47 0.51 0.00 4.10
151 152 3.684788 AGCACCGTCATGAAGATAACAAC 59.315 43.478 10.47 0.00 0.00 3.32
152 153 3.932710 GAGCACCGTCATGAAGATAACAA 59.067 43.478 10.47 0.00 0.00 2.83
153 154 3.521560 GAGCACCGTCATGAAGATAACA 58.478 45.455 10.47 0.00 0.00 2.41
154 155 2.535984 CGAGCACCGTCATGAAGATAAC 59.464 50.000 10.47 0.00 0.00 1.89
155 156 2.809446 CGAGCACCGTCATGAAGATAA 58.191 47.619 10.47 0.00 0.00 1.75
156 157 1.536072 GCGAGCACCGTCATGAAGATA 60.536 52.381 10.47 0.00 41.15 1.98
157 158 0.807667 GCGAGCACCGTCATGAAGAT 60.808 55.000 10.47 0.00 41.15 2.40
158 159 1.446099 GCGAGCACCGTCATGAAGA 60.446 57.895 10.47 0.00 41.15 2.87
159 160 1.086067 ATGCGAGCACCGTCATGAAG 61.086 55.000 0.00 0.00 41.15 3.02
160 161 0.174617 TATGCGAGCACCGTCATGAA 59.825 50.000 0.00 0.00 41.15 2.57
161 162 0.527600 GTATGCGAGCACCGTCATGA 60.528 55.000 0.00 0.00 41.15 3.07
162 163 0.805711 TGTATGCGAGCACCGTCATG 60.806 55.000 0.00 0.00 41.15 3.07
163 164 0.806102 GTGTATGCGAGCACCGTCAT 60.806 55.000 0.00 10.92 41.15 3.06
164 165 1.445410 GTGTATGCGAGCACCGTCA 60.445 57.895 0.00 0.00 41.15 4.35
165 166 1.445410 TGTGTATGCGAGCACCGTC 60.445 57.895 0.00 0.00 41.15 4.79
166 167 1.736645 GTGTGTATGCGAGCACCGT 60.737 57.895 0.00 0.00 41.15 4.83
167 168 2.452813 GGTGTGTATGCGAGCACCG 61.453 63.158 0.00 0.00 41.37 4.94
168 169 3.486263 GGTGTGTATGCGAGCACC 58.514 61.111 0.00 6.33 43.52 5.01
169 170 1.635663 GGTGGTGTGTATGCGAGCAC 61.636 60.000 0.00 6.46 37.37 4.40
170 171 1.375396 GGTGGTGTGTATGCGAGCA 60.375 57.895 0.00 0.00 0.00 4.26
171 172 1.361668 CTGGTGGTGTGTATGCGAGC 61.362 60.000 0.00 0.00 0.00 5.03
172 173 0.037326 ACTGGTGGTGTGTATGCGAG 60.037 55.000 0.00 0.00 0.00 5.03
173 174 0.394938 AACTGGTGGTGTGTATGCGA 59.605 50.000 0.00 0.00 0.00 5.10
174 175 1.234821 AAACTGGTGGTGTGTATGCG 58.765 50.000 0.00 0.00 0.00 4.73
175 176 2.486592 GGTAAACTGGTGGTGTGTATGC 59.513 50.000 0.00 0.00 0.00 3.14
176 177 2.739913 CGGTAAACTGGTGGTGTGTATG 59.260 50.000 0.00 0.00 0.00 2.39
177 178 2.633967 TCGGTAAACTGGTGGTGTGTAT 59.366 45.455 0.00 0.00 0.00 2.29
178 179 2.037901 TCGGTAAACTGGTGGTGTGTA 58.962 47.619 0.00 0.00 0.00 2.90
179 180 0.831966 TCGGTAAACTGGTGGTGTGT 59.168 50.000 0.00 0.00 0.00 3.72
180 181 1.956297 TTCGGTAAACTGGTGGTGTG 58.044 50.000 0.00 0.00 0.00 3.82
181 182 2.105134 TCATTCGGTAAACTGGTGGTGT 59.895 45.455 0.00 0.00 0.00 4.16
182 183 2.773487 TCATTCGGTAAACTGGTGGTG 58.227 47.619 0.00 0.00 0.00 4.17
183 184 3.713826 ATCATTCGGTAAACTGGTGGT 57.286 42.857 0.00 0.00 0.00 4.16
184 185 5.364778 TGATATCATTCGGTAAACTGGTGG 58.635 41.667 0.00 0.00 0.00 4.61
185 186 6.073058 CCATGATATCATTCGGTAAACTGGTG 60.073 42.308 15.74 1.19 33.61 4.17
186 187 5.997746 CCATGATATCATTCGGTAAACTGGT 59.002 40.000 15.74 0.00 33.61 4.00
187 188 6.147821 GTCCATGATATCATTCGGTAAACTGG 59.852 42.308 15.74 11.24 33.61 4.00
188 189 6.147821 GGTCCATGATATCATTCGGTAAACTG 59.852 42.308 15.74 2.32 33.61 3.16
189 190 6.183361 TGGTCCATGATATCATTCGGTAAACT 60.183 38.462 15.74 0.00 33.61 2.66
190 191 5.995282 TGGTCCATGATATCATTCGGTAAAC 59.005 40.000 15.74 9.04 33.61 2.01
191 192 5.995282 GTGGTCCATGATATCATTCGGTAAA 59.005 40.000 15.74 3.19 33.61 2.01
192 193 5.547465 GTGGTCCATGATATCATTCGGTAA 58.453 41.667 15.74 3.49 33.61 2.85
193 194 4.321675 CGTGGTCCATGATATCATTCGGTA 60.322 45.833 15.74 3.48 33.61 4.02
194 195 3.554960 CGTGGTCCATGATATCATTCGGT 60.555 47.826 15.74 0.00 33.61 4.69
195 196 2.995939 CGTGGTCCATGATATCATTCGG 59.004 50.000 15.74 14.49 33.61 4.30
196 197 2.413112 GCGTGGTCCATGATATCATTCG 59.587 50.000 15.74 13.28 33.61 3.34
197 198 2.744202 GGCGTGGTCCATGATATCATTC 59.256 50.000 15.74 9.12 33.61 2.67
198 199 2.373169 AGGCGTGGTCCATGATATCATT 59.627 45.455 15.74 0.00 33.61 2.57
199 200 1.980765 AGGCGTGGTCCATGATATCAT 59.019 47.619 15.72 12.62 36.96 2.45
200 201 1.423584 AGGCGTGGTCCATGATATCA 58.576 50.000 15.72 8.10 0.00 2.15
201 202 2.146342 CAAGGCGTGGTCCATGATATC 58.854 52.381 15.72 0.00 0.00 1.63
202 203 1.768275 TCAAGGCGTGGTCCATGATAT 59.232 47.619 15.72 0.00 29.80 1.63
203 204 1.134521 GTCAAGGCGTGGTCCATGATA 60.135 52.381 15.72 0.00 36.40 2.15
204 205 0.392998 GTCAAGGCGTGGTCCATGAT 60.393 55.000 15.72 0.00 36.40 2.45
205 206 1.003839 GTCAAGGCGTGGTCCATGA 60.004 57.895 15.72 1.34 32.07 3.07
206 207 0.888736 TTGTCAAGGCGTGGTCCATG 60.889 55.000 6.73 6.73 0.00 3.66
207 208 0.179004 TTTGTCAAGGCGTGGTCCAT 60.179 50.000 0.00 0.00 0.00 3.41
208 209 0.817634 CTTTGTCAAGGCGTGGTCCA 60.818 55.000 0.00 0.00 0.00 4.02
209 210 1.949257 CTTTGTCAAGGCGTGGTCC 59.051 57.895 0.00 0.00 0.00 4.46
210 211 1.282875 GCTTTGTCAAGGCGTGGTC 59.717 57.895 3.69 0.00 0.00 4.02
211 212 1.034838 TTGCTTTGTCAAGGCGTGGT 61.035 50.000 14.23 0.00 0.00 4.16
212 213 0.318107 CTTGCTTTGTCAAGGCGTGG 60.318 55.000 14.23 4.08 39.68 4.94
213 214 0.381801 ACTTGCTTTGTCAAGGCGTG 59.618 50.000 14.23 11.44 45.72 5.34
214 215 0.381801 CACTTGCTTTGTCAAGGCGT 59.618 50.000 14.23 5.01 45.72 5.68
215 216 0.936297 GCACTTGCTTTGTCAAGGCG 60.936 55.000 14.23 4.41 45.72 5.52
216 217 0.102844 TGCACTTGCTTTGTCAAGGC 59.897 50.000 12.50 12.50 45.72 4.35
217 218 2.159198 ACTTGCACTTGCTTTGTCAAGG 60.159 45.455 2.33 0.00 45.72 3.61
218 219 2.855963 CACTTGCACTTGCTTTGTCAAG 59.144 45.455 2.33 2.33 46.57 3.02
219 220 2.878580 CACTTGCACTTGCTTTGTCAA 58.121 42.857 2.33 0.00 42.66 3.18
220 221 1.469595 GCACTTGCACTTGCTTTGTCA 60.470 47.619 10.83 0.00 42.66 3.58
221 222 1.203065 GCACTTGCACTTGCTTTGTC 58.797 50.000 10.83 0.00 42.66 3.18
222 223 3.350766 GCACTTGCACTTGCTTTGT 57.649 47.368 10.83 0.00 42.66 2.83
241 242 2.502142 AGACATTGGCATGCTGAGAA 57.498 45.000 18.92 6.07 33.05 2.87
262 263 3.442273 GGTATTACACACCCCACACATTG 59.558 47.826 0.00 0.00 0.00 2.82
282 284 5.529289 TCCTCTGTCATCAAGGTATTAGGT 58.471 41.667 0.00 0.00 0.00 3.08
283 285 6.284459 GTTCCTCTGTCATCAAGGTATTAGG 58.716 44.000 0.00 0.00 0.00 2.69
284 286 6.284459 GGTTCCTCTGTCATCAAGGTATTAG 58.716 44.000 0.00 0.00 0.00 1.73
287 289 3.456277 GGGTTCCTCTGTCATCAAGGTAT 59.544 47.826 0.00 0.00 0.00 2.73
288 290 2.838202 GGGTTCCTCTGTCATCAAGGTA 59.162 50.000 0.00 0.00 0.00 3.08
289 291 1.630878 GGGTTCCTCTGTCATCAAGGT 59.369 52.381 0.00 0.00 0.00 3.50
290 292 1.630369 TGGGTTCCTCTGTCATCAAGG 59.370 52.381 0.00 0.00 0.00 3.61
306 312 5.310857 AGACTTTTCAGGTCTATTCTTGGGT 59.689 40.000 0.00 0.00 41.56 4.51
331 337 1.508632 TTCTTTAGCGTGGTCTGCAC 58.491 50.000 0.00 0.00 33.85 4.57
333 339 1.197036 GGTTTCTTTAGCGTGGTCTGC 59.803 52.381 0.00 0.00 0.00 4.26
336 342 2.074576 GAGGGTTTCTTTAGCGTGGTC 58.925 52.381 0.00 0.00 0.00 4.02
356 362 5.446741 CCGTGTCAAGGAACCATAATTAACG 60.447 44.000 0.00 0.00 0.00 3.18
357 363 5.675323 GCCGTGTCAAGGAACCATAATTAAC 60.675 44.000 9.22 0.00 0.00 2.01
358 364 4.396790 GCCGTGTCAAGGAACCATAATTAA 59.603 41.667 9.22 0.00 0.00 1.40
359 365 3.942748 GCCGTGTCAAGGAACCATAATTA 59.057 43.478 9.22 0.00 0.00 1.40
360 366 2.752903 GCCGTGTCAAGGAACCATAATT 59.247 45.455 9.22 0.00 0.00 1.40
382 388 1.596727 GCGAAGATCAGAGTCAATGGC 59.403 52.381 0.00 0.00 0.00 4.40
383 389 2.208431 GGCGAAGATCAGAGTCAATGG 58.792 52.381 0.00 0.00 0.00 3.16
387 393 3.181475 GGTAATGGCGAAGATCAGAGTCA 60.181 47.826 0.00 0.00 0.00 3.41
390 396 3.459232 TGGTAATGGCGAAGATCAGAG 57.541 47.619 0.00 0.00 0.00 3.35
403 409 0.530288 CCCACCGCCTTTTGGTAATG 59.470 55.000 0.00 0.00 42.99 1.90
405 411 1.228613 CCCCACCGCCTTTTGGTAA 60.229 57.895 0.00 0.00 42.99 2.85
406 412 2.437002 CCCCACCGCCTTTTGGTA 59.563 61.111 0.00 0.00 42.99 3.25
411 417 2.856988 TTCTCCCCCACCGCCTTT 60.857 61.111 0.00 0.00 0.00 3.11
440 446 0.178938 TGCCTGCTTTTCATTCCCCA 60.179 50.000 0.00 0.00 0.00 4.96
503 512 1.523711 TCATGCGGCGGGAGATTTC 60.524 57.895 9.78 0.00 0.00 2.17
531 540 3.286751 GCTTTGACCGCAGCCACA 61.287 61.111 0.00 0.00 0.00 4.17
580 593 8.648698 TCCTTTCAATAAGTGATTCATCCAAA 57.351 30.769 0.00 0.00 35.70 3.28
582 595 8.648698 TTTCCTTTCAATAAGTGATTCATCCA 57.351 30.769 0.00 0.00 35.70 3.41
599 612 6.039717 TGCACATCCAAGCTATATTTCCTTTC 59.960 38.462 0.00 0.00 0.00 2.62
613 626 8.537049 TTATTTCTTCAAAATGCACATCCAAG 57.463 30.769 0.00 0.00 0.00 3.61
636 649 7.148154 CCGTGTTGAAAATAACTCATCCCATTA 60.148 37.037 0.00 0.00 0.00 1.90
645 661 6.148811 TCCATTCTCCGTGTTGAAAATAACTC 59.851 38.462 0.00 0.00 0.00 3.01
702 718 5.065218 CCATTCCCATCTAAAGAAACACTCG 59.935 44.000 0.00 0.00 0.00 4.18
780 796 6.782150 TCTTTTTCTTCCTCTTTTCGTTGAC 58.218 36.000 0.00 0.00 0.00 3.18
1072 1106 1.655114 AAGTTCCACTTGGGCCTGGT 61.655 55.000 4.53 0.00 37.00 4.00
1124 1158 2.232452 CCATCGATCATGAGGGAGTACC 59.768 54.545 0.09 0.00 42.34 3.34
1369 1433 1.535462 CGTTCCTGCCTTCGAAATTGT 59.465 47.619 0.00 0.00 0.00 2.71
1413 1477 0.175760 TACATGCCGAAGCTCTGGAC 59.824 55.000 8.32 1.01 40.80 4.02
1540 1604 4.164604 ACCATAAAATTGGCCAATCTGCAT 59.835 37.500 30.74 17.82 40.68 3.96
1541 1605 3.518705 ACCATAAAATTGGCCAATCTGCA 59.481 39.130 30.74 16.42 40.68 4.41
1542 1606 4.122046 GACCATAAAATTGGCCAATCTGC 58.878 43.478 30.74 10.98 40.68 4.26
1543 1607 5.353938 CAGACCATAAAATTGGCCAATCTG 58.646 41.667 30.74 25.10 40.68 2.90
1544 1608 4.141869 GCAGACCATAAAATTGGCCAATCT 60.142 41.667 30.74 22.05 40.68 2.40
1545 1609 4.122046 GCAGACCATAAAATTGGCCAATC 58.878 43.478 30.74 16.63 40.68 2.67
1546 1610 3.518705 TGCAGACCATAAAATTGGCCAAT 59.481 39.130 25.73 25.73 40.68 3.16
1547 1611 2.902486 TGCAGACCATAAAATTGGCCAA 59.098 40.909 23.00 23.00 40.68 4.52
1548 1612 2.533916 TGCAGACCATAAAATTGGCCA 58.466 42.857 0.00 0.00 40.68 5.36
1549 1613 3.608316 TTGCAGACCATAAAATTGGCC 57.392 42.857 0.00 0.00 40.68 5.36
1550 1614 3.310501 GCATTGCAGACCATAAAATTGGC 59.689 43.478 3.15 0.00 40.68 4.52
1551 1615 4.505808 TGCATTGCAGACCATAAAATTGG 58.494 39.130 7.38 0.00 37.10 3.16
1552 1616 6.482835 CATTGCATTGCAGACCATAAAATTG 58.517 36.000 11.76 0.00 40.61 2.32
1553 1617 5.065474 GCATTGCATTGCAGACCATAAAATT 59.935 36.000 24.71 0.00 40.61 1.82
1554 1618 4.573201 GCATTGCATTGCAGACCATAAAAT 59.427 37.500 24.71 0.00 40.61 1.82
1723 1799 0.036732 CTACCAGGCTCTTGCAACCA 59.963 55.000 7.27 0.00 41.91 3.67
1759 1835 4.322049 CGGTCATCTGTCTAAACTCTTGGT 60.322 45.833 0.00 0.00 0.00 3.67
2232 2314 5.468746 CGGTTCAACTTTTACAGGATCTCAA 59.531 40.000 0.00 0.00 0.00 3.02
2307 2389 7.884877 ACTCTGGATCAAACATTCTCATTTACA 59.115 33.333 0.00 0.00 0.00 2.41
2444 2526 1.072331 TCCAGTTCTCAGTCCAAAGGC 59.928 52.381 0.00 0.00 0.00 4.35
2682 2765 4.927444 TTGACGCGTCAACGGCGA 62.927 61.111 42.01 25.21 46.80 5.54
2837 2920 4.530553 TGTTCAGTATGGTGGTATCACTGT 59.469 41.667 6.00 0.00 43.17 3.55
2879 2962 9.306777 ACTTGATGATAGATAGCATGTCTCTTA 57.693 33.333 0.00 0.00 31.62 2.10
2880 2963 8.192743 ACTTGATGATAGATAGCATGTCTCTT 57.807 34.615 0.00 0.00 31.62 2.85
2933 3016 6.833041 TGAACCTGTGTATTCCAAGAAGTTA 58.167 36.000 0.00 0.00 0.00 2.24
3221 3304 4.589647 TTCATCAATGGGACCTTCATCA 57.410 40.909 0.00 0.00 0.00 3.07
3452 3563 0.996583 TTCCCAACCTCATACCCCAC 59.003 55.000 0.00 0.00 0.00 4.61
3453 3564 0.996583 GTTCCCAACCTCATACCCCA 59.003 55.000 0.00 0.00 0.00 4.96
3474 3585 1.475280 TGCAGAAATGATGGAAGCAGC 59.525 47.619 0.00 0.00 32.93 5.25
3514 3625 7.936454 GTTCAATAACAGAACACTGTCACACAG 60.936 40.741 1.99 1.99 43.00 3.66
3628 3739 3.009033 TCCCCTGTATTGTTGTTGGAGAG 59.991 47.826 0.00 0.00 0.00 3.20
3654 3765 1.476110 CCTCGGAAAACCACAGTTCCA 60.476 52.381 3.54 0.00 43.02 3.53
3664 3775 2.566279 AGTACTTCTCCCCTCGGAAAAC 59.434 50.000 0.00 0.00 37.86 2.43
3678 3789 2.728922 CGGCTCGGAATGTAGTACTTC 58.271 52.381 0.00 0.00 0.00 3.01
3774 3885 9.553064 CTGAAGCAATGTCCTTACTAATTAGAT 57.447 33.333 19.38 6.20 0.00 1.98
4029 4140 9.959749 GATGAAATTAAGAAACAACACCTTGTA 57.040 29.630 0.00 0.00 39.88 2.41
4096 4207 5.913137 TTTGCTACCTGTGGGAAAATATG 57.087 39.130 0.00 0.00 36.25 1.78
4302 4413 5.585390 CAATTGGTATCTGCTTTTGGCTAG 58.415 41.667 0.00 0.00 42.39 3.42
4370 4481 1.684983 CCATGACCATTCCCTGCATTC 59.315 52.381 0.00 0.00 0.00 2.67
4455 4566 2.287608 TGGATGATGACAGTATCGCGAC 60.288 50.000 12.93 0.00 0.00 5.19
4461 4572 5.311385 TCATTCCCATGGATGATGACAGTAT 59.689 40.000 15.22 0.00 33.31 2.12
4555 4680 4.797471 TGTGCAAATTGAACTATGACTGC 58.203 39.130 5.60 0.00 0.00 4.40
4739 4869 3.430374 GCCTTGAGGAGCGAAAGTGTATA 60.430 47.826 0.06 0.00 37.39 1.47
4833 4964 3.777465 TCTCCGTGTAAATCTCCTTCG 57.223 47.619 0.00 0.00 0.00 3.79
4924 5059 1.025041 GATGATCCTTTTCGTGGCCC 58.975 55.000 0.00 0.00 0.00 5.80
4984 5124 5.311265 ACATGACATGAAACAGACAGTGAT 58.689 37.500 22.19 0.00 0.00 3.06
5013 5153 1.337821 CGTCTGGCTCGTCAAAGTAC 58.662 55.000 0.00 0.00 0.00 2.73
5037 5177 2.455674 TGTCAAGGACAACAGGATCG 57.544 50.000 0.00 0.00 39.78 3.69
5084 5224 1.070786 ATGCCTTCACCGTTCACGT 59.929 52.632 0.00 0.00 37.74 4.49
5094 5234 1.220749 GTAGCGACCCATGCCTTCA 59.779 57.895 0.00 0.00 0.00 3.02
5194 5337 7.818930 AGTGAAAATACATTTTGTAGGCCAATG 59.181 33.333 5.01 8.46 39.86 2.82
5263 5406 6.767423 AGGTTGTTCTTGGATTTCAAAAATGG 59.233 34.615 0.00 0.00 34.56 3.16
5391 5534 0.947244 CGTCCCATGGCTTTATCTGC 59.053 55.000 6.09 0.00 0.00 4.26
5486 5629 2.420687 GCAAAGACTACCTCCTGGATGG 60.421 54.545 0.00 3.71 37.04 3.51
5580 5723 1.945394 GCCTGTACCTTCTCGACGATA 59.055 52.381 0.00 0.00 0.00 2.92
5588 5731 0.919710 GGGGAATGCCTGTACCTTCT 59.080 55.000 0.00 0.00 0.00 2.85
5627 5770 8.671987 ATCCAGGATAAGCTACAGTATTACAT 57.328 34.615 0.00 0.00 0.00 2.29
5665 5936 1.392589 CGGCAACCATAGGCAGAAAT 58.607 50.000 0.00 0.00 0.00 2.17
5668 5939 1.847798 AACCGGCAACCATAGGCAGA 61.848 55.000 0.00 0.00 0.00 4.26
5917 6188 0.029300 ACAAGCGACACACAATGCAC 59.971 50.000 0.00 0.00 0.00 4.57
6284 6568 8.986477 AATTTGGCAATATAAACTTGTCACTC 57.014 30.769 0.00 0.00 37.90 3.51
6285 6569 9.423061 GAAATTTGGCAATATAAACTTGTCACT 57.577 29.630 0.00 0.00 37.90 3.41
6286 6570 9.423061 AGAAATTTGGCAATATAAACTTGTCAC 57.577 29.630 0.00 0.00 37.90 3.67
6287 6571 9.421806 CAGAAATTTGGCAATATAAACTTGTCA 57.578 29.630 0.00 0.00 36.49 3.58
6288 6572 9.638239 TCAGAAATTTGGCAATATAAACTTGTC 57.362 29.630 0.00 0.00 0.00 3.18
6291 6575 9.101655 GCATCAGAAATTTGGCAATATAAACTT 57.898 29.630 0.00 0.00 0.00 2.66
6292 6576 8.259411 TGCATCAGAAATTTGGCAATATAAACT 58.741 29.630 0.00 0.00 0.00 2.66
6679 6975 2.064434 TGAAAACCACACTCATGGCA 57.936 45.000 0.00 0.00 44.33 4.92
6786 7083 0.038744 ACATCAAGCAGGGGGAGTTG 59.961 55.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.