Multiple sequence alignment - TraesCS5B01G330800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G330800 chr5B 100.000 3206 0 0 1 3206 515187810 515184605 0.000000e+00 5921.0
1 TraesCS5B01G330800 chr5B 76.248 741 148 21 1270 1987 6918245 6918980 5.050000e-98 368.0
2 TraesCS5B01G330800 chr5A 92.864 2971 146 35 293 3203 540055456 540052492 0.000000e+00 4252.0
3 TraesCS5B01G330800 chr5D 94.605 2521 106 7 714 3206 425841946 425839428 0.000000e+00 3875.0
4 TraesCS5B01G330800 chr3A 90.839 775 63 4 2430 3200 44640775 44640005 0.000000e+00 1031.0
5 TraesCS5B01G330800 chr3A 87.840 773 80 9 2434 3200 44711101 44710337 0.000000e+00 894.0
6 TraesCS5B01G330800 chr3A 81.481 891 151 11 1272 2152 186040258 186041144 0.000000e+00 719.0
7 TraesCS5B01G330800 chr3B 89.548 775 73 4 2430 3200 54795573 54794803 0.000000e+00 976.0
8 TraesCS5B01G330800 chr3B 87.133 715 88 4 2488 3200 54786037 54785325 0.000000e+00 808.0
9 TraesCS5B01G330800 chr3B 81.236 890 155 10 1272 2152 236495569 236496455 0.000000e+00 708.0
10 TraesCS5B01G330800 chr3D 86.434 774 99 5 2430 3200 32280168 32279398 0.000000e+00 843.0
11 TraesCS5B01G330800 chr3D 86.494 770 90 7 2441 3200 32300864 32300099 0.000000e+00 833.0
12 TraesCS5B01G330800 chr3D 81.124 890 156 9 1272 2152 159785905 159786791 0.000000e+00 702.0
13 TraesCS5B01G330800 chr4D 83.784 814 125 6 1272 2080 631000 630189 0.000000e+00 765.0
14 TraesCS5B01G330800 chr4D 84.665 776 104 10 2433 3199 1996614 1995845 0.000000e+00 760.0
15 TraesCS5B01G330800 chr4B 83.744 812 123 8 1272 2077 1243723 1244531 0.000000e+00 760.0
16 TraesCS5B01G330800 chr4B 82.609 299 40 11 1713 2005 638987921 638987629 1.480000e-63 254.0
17 TraesCS5B01G330800 chr4A 83.456 816 127 6 1272 2080 901533 900719 0.000000e+00 752.0
18 TraesCS5B01G330800 chr4A 78.077 780 149 19 1271 2036 709977088 709977859 1.040000e-129 473.0
19 TraesCS5B01G330800 chr7D 78.718 780 144 19 1271 2036 25522236 25523007 4.770000e-138 501.0
20 TraesCS5B01G330800 chr1D 75.534 1030 235 15 1061 2080 316859386 316858364 1.030000e-134 490.0
21 TraesCS5B01G330800 chr7A 78.205 780 148 19 1271 2036 26448533 26449304 2.240000e-131 479.0
22 TraesCS5B01G330800 chr1B 74.662 1034 234 24 1061 2080 429004840 429003821 1.770000e-117 433.0
23 TraesCS5B01G330800 chrUn 81.818 209 31 1 5 213 2181941 2182142 5.500000e-38 169.0
24 TraesCS5B01G330800 chr1A 81.818 209 31 1 5 213 587769693 587769492 5.500000e-38 169.0
25 TraesCS5B01G330800 chr1A 87.692 65 8 0 5 69 587739946 587739882 3.430000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G330800 chr5B 515184605 515187810 3205 True 5921 5921 100.000 1 3206 1 chr5B.!!$R1 3205
1 TraesCS5B01G330800 chr5B 6918245 6918980 735 False 368 368 76.248 1270 1987 1 chr5B.!!$F1 717
2 TraesCS5B01G330800 chr5A 540052492 540055456 2964 True 4252 4252 92.864 293 3203 1 chr5A.!!$R1 2910
3 TraesCS5B01G330800 chr5D 425839428 425841946 2518 True 3875 3875 94.605 714 3206 1 chr5D.!!$R1 2492
4 TraesCS5B01G330800 chr3A 44640005 44640775 770 True 1031 1031 90.839 2430 3200 1 chr3A.!!$R1 770
5 TraesCS5B01G330800 chr3A 44710337 44711101 764 True 894 894 87.840 2434 3200 1 chr3A.!!$R2 766
6 TraesCS5B01G330800 chr3A 186040258 186041144 886 False 719 719 81.481 1272 2152 1 chr3A.!!$F1 880
7 TraesCS5B01G330800 chr3B 54794803 54795573 770 True 976 976 89.548 2430 3200 1 chr3B.!!$R2 770
8 TraesCS5B01G330800 chr3B 54785325 54786037 712 True 808 808 87.133 2488 3200 1 chr3B.!!$R1 712
9 TraesCS5B01G330800 chr3B 236495569 236496455 886 False 708 708 81.236 1272 2152 1 chr3B.!!$F1 880
10 TraesCS5B01G330800 chr3D 32279398 32280168 770 True 843 843 86.434 2430 3200 1 chr3D.!!$R1 770
11 TraesCS5B01G330800 chr3D 32300099 32300864 765 True 833 833 86.494 2441 3200 1 chr3D.!!$R2 759
12 TraesCS5B01G330800 chr3D 159785905 159786791 886 False 702 702 81.124 1272 2152 1 chr3D.!!$F1 880
13 TraesCS5B01G330800 chr4D 630189 631000 811 True 765 765 83.784 1272 2080 1 chr4D.!!$R1 808
14 TraesCS5B01G330800 chr4D 1995845 1996614 769 True 760 760 84.665 2433 3199 1 chr4D.!!$R2 766
15 TraesCS5B01G330800 chr4B 1243723 1244531 808 False 760 760 83.744 1272 2077 1 chr4B.!!$F1 805
16 TraesCS5B01G330800 chr4A 900719 901533 814 True 752 752 83.456 1272 2080 1 chr4A.!!$R1 808
17 TraesCS5B01G330800 chr4A 709977088 709977859 771 False 473 473 78.077 1271 2036 1 chr4A.!!$F1 765
18 TraesCS5B01G330800 chr7D 25522236 25523007 771 False 501 501 78.718 1271 2036 1 chr7D.!!$F1 765
19 TraesCS5B01G330800 chr1D 316858364 316859386 1022 True 490 490 75.534 1061 2080 1 chr1D.!!$R1 1019
20 TraesCS5B01G330800 chr7A 26448533 26449304 771 False 479 479 78.205 1271 2036 1 chr7A.!!$F1 765
21 TraesCS5B01G330800 chr1B 429003821 429004840 1019 True 433 433 74.662 1061 2080 1 chr1B.!!$R1 1019

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.035630 AGCAGCACCACCATTCTCTC 60.036 55.0 0.00 0.0 0.0 3.20 F
416 434 0.099436 GCAAATGTGATCACGAGGCC 59.901 55.0 20.54 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2211 0.400213 TTCAGACCGCCACCAAGAAT 59.600 50.000 0.0 0.0 0.0 2.4 R
2348 2455 1.282875 GAGCTGTTGGTGGTTTCGC 59.717 57.895 0.0 0.0 0.0 4.7 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.006672 GTATGTCATCCCGGCTTGG 57.993 57.895 0.00 0.00 37.55 3.61
19 20 0.468226 GTATGTCATCCCGGCTTGGA 59.532 55.000 0.00 0.00 42.00 3.53
20 21 0.758734 TATGTCATCCCGGCTTGGAG 59.241 55.000 0.00 0.00 42.00 3.86
21 22 2.514824 GTCATCCCGGCTTGGAGC 60.515 66.667 0.00 0.00 42.00 4.70
22 23 3.008517 TCATCCCGGCTTGGAGCA 61.009 61.111 0.00 0.00 44.75 4.26
23 24 2.194056 CATCCCGGCTTGGAGCAT 59.806 61.111 0.00 0.00 44.75 3.79
24 25 2.191513 CATCCCGGCTTGGAGCATG 61.192 63.158 0.00 0.00 44.75 4.06
25 26 3.426309 ATCCCGGCTTGGAGCATGG 62.426 63.158 0.00 3.22 44.75 3.66
26 27 4.431131 CCCGGCTTGGAGCATGGT 62.431 66.667 0.00 0.00 44.75 3.55
27 28 3.136123 CCGGCTTGGAGCATGGTG 61.136 66.667 0.00 0.00 44.75 4.17
28 29 2.046023 CGGCTTGGAGCATGGTGA 60.046 61.111 0.00 0.00 44.75 4.02
29 30 2.401766 CGGCTTGGAGCATGGTGAC 61.402 63.158 0.00 0.00 44.75 3.67
30 31 2.401766 GGCTTGGAGCATGGTGACG 61.402 63.158 0.00 0.00 44.75 4.35
31 32 1.672356 GCTTGGAGCATGGTGACGT 60.672 57.895 0.00 0.00 41.89 4.34
32 33 1.639298 GCTTGGAGCATGGTGACGTC 61.639 60.000 9.11 9.11 41.89 4.34
33 34 1.003839 TTGGAGCATGGTGACGTCC 60.004 57.895 14.12 4.20 0.00 4.79
34 35 2.509336 GGAGCATGGTGACGTCCG 60.509 66.667 14.12 0.00 0.00 4.79
35 36 2.571757 GAGCATGGTGACGTCCGA 59.428 61.111 14.12 2.02 0.00 4.55
36 37 1.805945 GAGCATGGTGACGTCCGAC 60.806 63.158 14.12 5.19 0.00 4.79
46 47 3.755628 CGTCCGACGTCCATGGGT 61.756 66.667 13.02 1.93 36.74 4.51
47 48 2.183555 GTCCGACGTCCATGGGTC 59.816 66.667 13.02 11.39 0.00 4.46
50 51 3.189921 CGACGTCCATGGGTCGTA 58.810 61.111 26.31 0.90 45.99 3.43
51 52 1.226491 CGACGTCCATGGGTCGTAC 60.226 63.158 26.31 20.02 45.99 3.67
52 53 1.885157 GACGTCCATGGGTCGTACA 59.115 57.895 26.56 0.00 45.99 2.90
53 54 0.458669 GACGTCCATGGGTCGTACAT 59.541 55.000 26.56 11.51 45.99 2.29
54 55 0.458669 ACGTCCATGGGTCGTACATC 59.541 55.000 25.78 2.76 44.45 3.06
55 56 0.458260 CGTCCATGGGTCGTACATCA 59.542 55.000 13.02 0.00 30.36 3.07
56 57 1.068588 CGTCCATGGGTCGTACATCAT 59.931 52.381 13.02 0.00 30.36 2.45
57 58 2.483876 GTCCATGGGTCGTACATCATG 58.516 52.381 13.02 1.20 37.37 3.07
58 59 2.102420 GTCCATGGGTCGTACATCATGA 59.898 50.000 13.02 0.00 39.27 3.07
59 60 2.365293 TCCATGGGTCGTACATCATGAG 59.635 50.000 13.02 0.00 39.27 2.90
60 61 2.548707 CCATGGGTCGTACATCATGAGG 60.549 54.545 5.68 5.68 39.27 3.86
61 62 0.464036 TGGGTCGTACATCATGAGGC 59.536 55.000 7.40 0.00 0.00 4.70
62 63 0.597637 GGGTCGTACATCATGAGGCG 60.598 60.000 7.40 4.12 0.00 5.52
63 64 0.597637 GGTCGTACATCATGAGGCGG 60.598 60.000 7.40 0.00 0.00 6.13
64 65 1.067416 TCGTACATCATGAGGCGGC 59.933 57.895 7.40 0.00 0.00 6.53
65 66 1.956170 CGTACATCATGAGGCGGCC 60.956 63.158 12.11 12.11 0.00 6.13
66 67 1.598130 GTACATCATGAGGCGGCCC 60.598 63.158 17.02 8.02 0.00 5.80
67 68 3.163832 TACATCATGAGGCGGCCCG 62.164 63.158 17.02 0.00 35.76 6.13
68 69 4.552365 CATCATGAGGCGGCCCGT 62.552 66.667 17.02 5.87 35.76 5.28
69 70 4.241555 ATCATGAGGCGGCCCGTC 62.242 66.667 17.02 0.00 35.76 4.79
79 80 4.547367 GGCCCGTCGAATCCCCTG 62.547 72.222 0.00 0.00 0.00 4.45
80 81 3.782443 GCCCGTCGAATCCCCTGT 61.782 66.667 0.00 0.00 0.00 4.00
81 82 2.499685 CCCGTCGAATCCCCTGTC 59.500 66.667 0.00 0.00 0.00 3.51
82 83 2.058595 CCCGTCGAATCCCCTGTCT 61.059 63.158 0.00 0.00 0.00 3.41
83 84 1.614241 CCCGTCGAATCCCCTGTCTT 61.614 60.000 0.00 0.00 0.00 3.01
84 85 0.460284 CCGTCGAATCCCCTGTCTTG 60.460 60.000 0.00 0.00 0.00 3.02
85 86 0.460284 CGTCGAATCCCCTGTCTTGG 60.460 60.000 0.00 0.00 0.00 3.61
86 87 0.613777 GTCGAATCCCCTGTCTTGGT 59.386 55.000 0.00 0.00 0.00 3.67
87 88 0.613260 TCGAATCCCCTGTCTTGGTG 59.387 55.000 0.00 0.00 0.00 4.17
88 89 0.613260 CGAATCCCCTGTCTTGGTGA 59.387 55.000 0.00 0.00 0.00 4.02
89 90 1.406069 CGAATCCCCTGTCTTGGTGAG 60.406 57.143 0.00 0.00 0.00 3.51
90 91 1.630878 GAATCCCCTGTCTTGGTGAGT 59.369 52.381 0.00 0.00 0.00 3.41
91 92 0.987294 ATCCCCTGTCTTGGTGAGTG 59.013 55.000 0.00 0.00 0.00 3.51
92 93 1.127567 TCCCCTGTCTTGGTGAGTGG 61.128 60.000 0.00 0.00 0.00 4.00
93 94 1.418908 CCCCTGTCTTGGTGAGTGGT 61.419 60.000 0.00 0.00 0.00 4.16
94 95 0.250467 CCCTGTCTTGGTGAGTGGTG 60.250 60.000 0.00 0.00 0.00 4.17
95 96 0.758734 CCTGTCTTGGTGAGTGGTGA 59.241 55.000 0.00 0.00 0.00 4.02
96 97 1.541233 CCTGTCTTGGTGAGTGGTGAC 60.541 57.143 0.00 0.00 0.00 3.67
97 98 0.468226 TGTCTTGGTGAGTGGTGACC 59.532 55.000 0.00 0.00 0.00 4.02
98 99 0.468226 GTCTTGGTGAGTGGTGACCA 59.532 55.000 0.00 0.00 40.61 4.02
99 100 1.072331 GTCTTGGTGAGTGGTGACCAT 59.928 52.381 7.94 0.00 41.92 3.55
100 101 1.347707 TCTTGGTGAGTGGTGACCATC 59.652 52.381 7.94 7.33 41.92 3.51
101 102 1.349026 CTTGGTGAGTGGTGACCATCT 59.651 52.381 7.94 7.03 41.92 2.90
102 103 0.976641 TGGTGAGTGGTGACCATCTC 59.023 55.000 20.23 20.23 37.32 2.75
103 104 0.976641 GGTGAGTGGTGACCATCTCA 59.023 55.000 23.63 23.63 38.40 3.27
104 105 1.556911 GGTGAGTGGTGACCATCTCAT 59.443 52.381 27.35 7.74 40.66 2.90
105 106 2.625737 GTGAGTGGTGACCATCTCATG 58.374 52.381 27.35 0.00 40.66 3.07
106 107 1.065926 TGAGTGGTGACCATCTCATGC 60.066 52.381 23.63 5.61 37.04 4.06
107 108 1.209019 GAGTGGTGACCATCTCATGCT 59.791 52.381 21.38 8.44 35.28 3.79
108 109 1.065636 AGTGGTGACCATCTCATGCTG 60.066 52.381 7.94 0.00 35.28 4.41
109 110 0.393402 TGGTGACCATCTCATGCTGC 60.393 55.000 0.00 0.00 0.00 5.25
110 111 1.434622 GGTGACCATCTCATGCTGCG 61.435 60.000 0.00 0.00 0.00 5.18
111 112 0.460811 GTGACCATCTCATGCTGCGA 60.461 55.000 0.00 0.00 0.00 5.10
112 113 0.460811 TGACCATCTCATGCTGCGAC 60.461 55.000 0.00 0.00 0.00 5.19
113 114 1.153289 ACCATCTCATGCTGCGACC 60.153 57.895 0.00 0.00 0.00 4.79
114 115 1.145598 CCATCTCATGCTGCGACCT 59.854 57.895 0.00 0.00 0.00 3.85
115 116 0.879400 CCATCTCATGCTGCGACCTC 60.879 60.000 0.00 0.00 0.00 3.85
116 117 0.104487 CATCTCATGCTGCGACCTCT 59.896 55.000 0.00 0.00 0.00 3.69
117 118 0.829333 ATCTCATGCTGCGACCTCTT 59.171 50.000 0.00 0.00 0.00 2.85
118 119 0.108472 TCTCATGCTGCGACCTCTTG 60.108 55.000 0.00 0.00 0.00 3.02
119 120 0.390866 CTCATGCTGCGACCTCTTGT 60.391 55.000 0.00 0.00 0.00 3.16
120 121 0.894835 TCATGCTGCGACCTCTTGTA 59.105 50.000 0.00 0.00 0.00 2.41
121 122 1.002366 CATGCTGCGACCTCTTGTAC 58.998 55.000 0.00 0.00 0.00 2.90
122 123 0.898320 ATGCTGCGACCTCTTGTACT 59.102 50.000 0.00 0.00 0.00 2.73
123 124 0.038251 TGCTGCGACCTCTTGTACTG 60.038 55.000 0.00 0.00 0.00 2.74
124 125 1.355066 GCTGCGACCTCTTGTACTGC 61.355 60.000 0.00 0.00 0.00 4.40
125 126 0.038251 CTGCGACCTCTTGTACTGCA 60.038 55.000 0.00 0.00 0.00 4.41
126 127 0.608130 TGCGACCTCTTGTACTGCAT 59.392 50.000 0.00 0.00 0.00 3.96
127 128 1.281899 GCGACCTCTTGTACTGCATC 58.718 55.000 0.00 0.00 0.00 3.91
128 129 1.550065 CGACCTCTTGTACTGCATCG 58.450 55.000 0.00 0.00 0.00 3.84
129 130 1.132453 CGACCTCTTGTACTGCATCGA 59.868 52.381 0.00 0.00 29.07 3.59
130 131 2.792890 CGACCTCTTGTACTGCATCGAG 60.793 54.545 0.00 0.00 29.07 4.04
131 132 1.134965 ACCTCTTGTACTGCATCGAGC 60.135 52.381 0.00 0.00 45.96 5.03
132 133 1.135915 CCTCTTGTACTGCATCGAGCT 59.864 52.381 8.07 0.00 45.94 4.09
133 134 2.191802 CTCTTGTACTGCATCGAGCTG 58.808 52.381 0.00 10.57 45.94 4.24
138 139 2.182791 CTGCATCGAGCTGTCGGT 59.817 61.111 0.00 0.00 46.80 4.69
145 146 2.561733 TCGAGCTGTCGGTGAAATAG 57.438 50.000 0.00 0.00 46.80 1.73
146 147 2.089201 TCGAGCTGTCGGTGAAATAGA 58.911 47.619 0.00 0.00 46.80 1.98
147 148 2.159421 TCGAGCTGTCGGTGAAATAGAC 60.159 50.000 0.00 0.00 46.80 2.59
148 149 2.159366 CGAGCTGTCGGTGAAATAGACT 60.159 50.000 0.00 0.00 42.87 3.24
149 150 3.673594 CGAGCTGTCGGTGAAATAGACTT 60.674 47.826 0.00 0.00 42.87 3.01
150 151 3.589988 AGCTGTCGGTGAAATAGACTTG 58.410 45.455 0.00 0.00 36.01 3.16
151 152 2.673368 GCTGTCGGTGAAATAGACTTGG 59.327 50.000 0.00 0.00 36.01 3.61
152 153 2.673368 CTGTCGGTGAAATAGACTTGGC 59.327 50.000 0.00 0.00 36.01 4.52
153 154 2.007608 GTCGGTGAAATAGACTTGGCC 58.992 52.381 0.00 0.00 32.58 5.36
154 155 1.006832 CGGTGAAATAGACTTGGCCG 58.993 55.000 0.00 0.00 0.00 6.13
155 156 1.379527 GGTGAAATAGACTTGGCCGG 58.620 55.000 0.00 0.00 0.00 6.13
156 157 1.339727 GGTGAAATAGACTTGGCCGGT 60.340 52.381 1.90 0.00 0.00 5.28
157 158 2.093341 GGTGAAATAGACTTGGCCGGTA 60.093 50.000 1.90 0.00 0.00 4.02
158 159 3.602483 GTGAAATAGACTTGGCCGGTAA 58.398 45.455 1.90 0.00 0.00 2.85
159 160 3.373130 GTGAAATAGACTTGGCCGGTAAC 59.627 47.826 1.90 0.00 0.00 2.50
160 161 3.262405 TGAAATAGACTTGGCCGGTAACT 59.738 43.478 1.90 0.00 0.00 2.24
161 162 3.994931 AATAGACTTGGCCGGTAACTT 57.005 42.857 1.90 0.00 0.00 2.66
162 163 2.754946 TAGACTTGGCCGGTAACTTG 57.245 50.000 1.90 0.00 0.00 3.16
163 164 1.053424 AGACTTGGCCGGTAACTTGA 58.947 50.000 1.90 0.00 0.00 3.02
164 165 1.628846 AGACTTGGCCGGTAACTTGAT 59.371 47.619 1.90 0.00 0.00 2.57
165 166 2.007608 GACTTGGCCGGTAACTTGATC 58.992 52.381 1.90 0.00 0.00 2.92
166 167 1.349688 ACTTGGCCGGTAACTTGATCA 59.650 47.619 1.90 0.00 0.00 2.92
167 168 2.224670 ACTTGGCCGGTAACTTGATCAA 60.225 45.455 8.12 8.12 0.00 2.57
168 169 2.570415 TGGCCGGTAACTTGATCAAA 57.430 45.000 9.88 0.00 0.00 2.69
169 170 2.432444 TGGCCGGTAACTTGATCAAAG 58.568 47.619 9.88 6.49 42.07 2.77
179 180 4.170468 ACTTGATCAAAGTCAACCCTGT 57.830 40.909 9.88 0.00 46.60 4.00
180 181 4.536765 ACTTGATCAAAGTCAACCCTGTT 58.463 39.130 9.88 0.00 46.60 3.16
181 182 4.339247 ACTTGATCAAAGTCAACCCTGTTG 59.661 41.667 9.88 0.55 46.60 3.33
182 183 3.221771 TGATCAAAGTCAACCCTGTTGG 58.778 45.455 7.08 0.00 41.37 3.77
191 192 2.594303 CCCTGTTGGTGAAGCGCA 60.594 61.111 11.47 0.00 0.00 6.09
192 193 2.620112 CCCTGTTGGTGAAGCGCAG 61.620 63.158 11.47 0.00 0.00 5.18
193 194 1.597854 CCTGTTGGTGAAGCGCAGA 60.598 57.895 11.47 0.00 0.00 4.26
194 195 1.572085 CCTGTTGGTGAAGCGCAGAG 61.572 60.000 11.47 0.00 0.00 3.35
195 196 1.572085 CTGTTGGTGAAGCGCAGAGG 61.572 60.000 11.47 0.00 0.00 3.69
196 197 2.669569 TTGGTGAAGCGCAGAGGC 60.670 61.111 11.47 0.00 0.00 4.70
197 198 3.474486 TTGGTGAAGCGCAGAGGCA 62.474 57.895 11.47 0.00 41.24 4.75
198 199 3.426568 GGTGAAGCGCAGAGGCAC 61.427 66.667 11.47 9.77 41.24 5.01
199 200 2.666190 GTGAAGCGCAGAGGCACA 60.666 61.111 11.47 0.00 41.24 4.57
200 201 2.666190 TGAAGCGCAGAGGCACAC 60.666 61.111 11.47 0.00 41.24 3.82
201 202 3.426568 GAAGCGCAGAGGCACACC 61.427 66.667 11.47 0.00 41.24 4.16
202 203 4.254709 AAGCGCAGAGGCACACCA 62.255 61.111 11.47 0.00 41.24 4.17
203 204 3.557903 AAGCGCAGAGGCACACCAT 62.558 57.895 11.47 0.00 41.24 3.55
204 205 3.503363 GCGCAGAGGCACACCATC 61.503 66.667 0.30 0.00 41.24 3.51
205 206 2.046988 CGCAGAGGCACACCATCA 60.047 61.111 0.00 0.00 41.24 3.07
206 207 1.672030 CGCAGAGGCACACCATCAA 60.672 57.895 0.00 0.00 41.24 2.57
207 208 1.878775 GCAGAGGCACACCATCAAC 59.121 57.895 0.00 0.00 40.72 3.18
208 209 1.589716 GCAGAGGCACACCATCAACC 61.590 60.000 0.00 0.00 40.72 3.77
209 210 0.962356 CAGAGGCACACCATCAACCC 60.962 60.000 0.00 0.00 39.06 4.11
210 211 2.034066 AGGCACACCATCAACCCG 59.966 61.111 0.00 0.00 39.06 5.28
211 212 3.061848 GGCACACCATCAACCCGG 61.062 66.667 0.00 0.00 35.26 5.73
212 213 2.282180 GCACACCATCAACCCGGT 60.282 61.111 0.00 0.00 35.27 5.28
213 214 2.332654 GCACACCATCAACCCGGTC 61.333 63.158 0.00 0.00 31.41 4.79
214 215 1.072332 CACACCATCAACCCGGTCA 59.928 57.895 0.00 0.00 31.41 4.02
215 216 0.536233 CACACCATCAACCCGGTCAA 60.536 55.000 0.00 0.00 31.41 3.18
216 217 0.536460 ACACCATCAACCCGGTCAAC 60.536 55.000 0.00 0.00 31.41 3.18
217 218 1.302192 ACCATCAACCCGGTCAACG 60.302 57.895 0.00 0.00 43.80 4.10
218 219 1.302192 CCATCAACCCGGTCAACGT 60.302 57.895 0.00 0.00 42.24 3.99
219 220 1.296056 CCATCAACCCGGTCAACGTC 61.296 60.000 0.00 0.00 42.24 4.34
220 221 1.004200 ATCAACCCGGTCAACGTCC 60.004 57.895 0.00 0.00 42.24 4.79
221 222 1.477685 ATCAACCCGGTCAACGTCCT 61.478 55.000 0.00 0.00 42.24 3.85
222 223 1.959226 CAACCCGGTCAACGTCCTG 60.959 63.158 0.00 0.00 42.24 3.86
223 224 3.819877 AACCCGGTCAACGTCCTGC 62.820 63.158 0.00 0.00 42.24 4.85
225 226 4.308458 CCGGTCAACGTCCTGCCA 62.308 66.667 0.00 0.00 42.24 4.92
226 227 2.738521 CGGTCAACGTCCTGCCAG 60.739 66.667 0.00 0.00 37.93 4.85
227 228 2.741092 GGTCAACGTCCTGCCAGA 59.259 61.111 0.00 0.00 0.00 3.86
228 229 1.374758 GGTCAACGTCCTGCCAGAG 60.375 63.158 0.00 0.00 0.00 3.35
229 230 1.374758 GTCAACGTCCTGCCAGAGG 60.375 63.158 0.00 0.00 44.45 3.69
235 236 2.203983 TCCTGCCAGAGGAGCCAA 60.204 61.111 0.00 0.00 46.96 4.52
236 237 1.847506 TCCTGCCAGAGGAGCCAAA 60.848 57.895 0.00 0.00 46.96 3.28
237 238 1.378250 CCTGCCAGAGGAGCCAAAG 60.378 63.158 0.00 0.00 46.33 2.77
238 239 2.034687 TGCCAGAGGAGCCAAAGC 59.965 61.111 0.00 0.00 40.32 3.51
239 240 2.034687 GCCAGAGGAGCCAAAGCA 59.965 61.111 0.00 0.00 43.56 3.91
240 241 2.045131 GCCAGAGGAGCCAAAGCAG 61.045 63.158 0.00 0.00 43.56 4.24
241 242 2.045131 CCAGAGGAGCCAAAGCAGC 61.045 63.158 0.00 0.00 43.56 5.25
242 243 1.303074 CAGAGGAGCCAAAGCAGCA 60.303 57.895 0.00 0.00 43.56 4.41
243 244 1.002379 AGAGGAGCCAAAGCAGCAG 60.002 57.895 0.00 0.00 43.56 4.24
244 245 2.675772 AGGAGCCAAAGCAGCAGC 60.676 61.111 0.00 0.00 43.56 5.25
245 246 2.987547 GGAGCCAAAGCAGCAGCA 60.988 61.111 3.17 0.00 45.49 4.41
246 247 2.257676 GAGCCAAAGCAGCAGCAC 59.742 61.111 3.17 0.00 45.49 4.40
247 248 3.278592 GAGCCAAAGCAGCAGCACC 62.279 63.158 3.17 0.00 45.49 5.01
248 249 3.608662 GCCAAAGCAGCAGCACCA 61.609 61.111 3.17 0.00 45.49 4.17
249 250 2.337532 CCAAAGCAGCAGCACCAC 59.662 61.111 3.17 0.00 45.49 4.16
250 251 2.337532 CAAAGCAGCAGCACCACC 59.662 61.111 3.17 0.00 45.49 4.61
251 252 2.123769 AAAGCAGCAGCACCACCA 60.124 55.556 3.17 0.00 45.49 4.17
252 253 1.532316 AAAGCAGCAGCACCACCAT 60.532 52.632 3.17 0.00 45.49 3.55
253 254 1.117142 AAAGCAGCAGCACCACCATT 61.117 50.000 3.17 0.00 45.49 3.16
254 255 1.530013 AAGCAGCAGCACCACCATTC 61.530 55.000 3.17 0.00 45.49 2.67
255 256 1.975407 GCAGCAGCACCACCATTCT 60.975 57.895 0.00 0.00 41.58 2.40
256 257 1.930908 GCAGCAGCACCACCATTCTC 61.931 60.000 0.00 0.00 41.58 2.87
257 258 0.322277 CAGCAGCACCACCATTCTCT 60.322 55.000 0.00 0.00 0.00 3.10
258 259 0.035630 AGCAGCACCACCATTCTCTC 60.036 55.000 0.00 0.00 0.00 3.20
259 260 1.028868 GCAGCACCACCATTCTCTCC 61.029 60.000 0.00 0.00 0.00 3.71
260 261 0.617413 CAGCACCACCATTCTCTCCT 59.383 55.000 0.00 0.00 0.00 3.69
261 262 1.004044 CAGCACCACCATTCTCTCCTT 59.996 52.381 0.00 0.00 0.00 3.36
262 263 1.707427 AGCACCACCATTCTCTCCTTT 59.293 47.619 0.00 0.00 0.00 3.11
263 264 2.108952 AGCACCACCATTCTCTCCTTTT 59.891 45.455 0.00 0.00 0.00 2.27
264 265 2.489722 GCACCACCATTCTCTCCTTTTC 59.510 50.000 0.00 0.00 0.00 2.29
265 266 2.744202 CACCACCATTCTCTCCTTTTCG 59.256 50.000 0.00 0.00 0.00 3.46
266 267 2.290323 ACCACCATTCTCTCCTTTTCGG 60.290 50.000 0.00 0.00 0.00 4.30
267 268 2.027192 CCACCATTCTCTCCTTTTCGGA 60.027 50.000 0.00 0.00 40.30 4.55
268 269 3.559171 CCACCATTCTCTCCTTTTCGGAA 60.559 47.826 0.00 0.00 42.53 4.30
269 270 3.686726 CACCATTCTCTCCTTTTCGGAAG 59.313 47.826 0.00 0.00 42.53 3.46
270 271 3.583086 ACCATTCTCTCCTTTTCGGAAGA 59.417 43.478 1.68 0.00 42.53 2.87
285 286 4.956085 TCGGAAGAAAGAAAGACATGACA 58.044 39.130 0.00 0.00 37.03 3.58
286 287 4.750098 TCGGAAGAAAGAAAGACATGACAC 59.250 41.667 0.00 0.00 37.03 3.67
287 288 4.752101 CGGAAGAAAGAAAGACATGACACT 59.248 41.667 0.00 0.00 0.00 3.55
288 289 5.333645 CGGAAGAAAGAAAGACATGACACTG 60.334 44.000 0.00 0.00 0.00 3.66
289 290 5.529060 GGAAGAAAGAAAGACATGACACTGT 59.471 40.000 0.00 0.00 0.00 3.55
290 291 5.998454 AGAAAGAAAGACATGACACTGTG 57.002 39.130 6.19 6.19 0.00 3.66
291 292 5.431765 AGAAAGAAAGACATGACACTGTGT 58.568 37.500 14.23 14.23 0.00 3.72
330 334 8.824159 ACAATATCAGTTATGTAGTGATGAGC 57.176 34.615 9.18 0.00 44.74 4.26
347 351 1.865970 GAGCCTGAAAGCTGATCATCG 59.134 52.381 0.00 0.00 45.15 3.84
348 352 1.209019 AGCCTGAAAGCTGATCATCGT 59.791 47.619 0.00 0.00 42.95 3.73
349 353 1.596727 GCCTGAAAGCTGATCATCGTC 59.403 52.381 0.00 0.00 0.00 4.20
350 354 1.857217 CCTGAAAGCTGATCATCGTCG 59.143 52.381 0.00 0.00 0.00 5.12
352 356 2.530177 TGAAAGCTGATCATCGTCGAC 58.470 47.619 5.18 5.18 0.00 4.20
353 357 2.094752 TGAAAGCTGATCATCGTCGACA 60.095 45.455 17.16 3.13 0.00 4.35
356 360 1.211818 GCTGATCATCGTCGACAGCC 61.212 60.000 19.50 6.73 45.19 4.85
359 363 0.318275 GATCATCGTCGACAGCCTCC 60.318 60.000 17.16 0.00 0.00 4.30
360 364 1.739338 ATCATCGTCGACAGCCTCCC 61.739 60.000 17.16 0.00 0.00 4.30
361 365 3.148279 ATCGTCGACAGCCTCCCC 61.148 66.667 17.16 0.00 0.00 4.81
363 367 3.382832 CGTCGACAGCCTCCCCTT 61.383 66.667 17.16 0.00 0.00 3.95
380 398 5.445069 TCCCCTTAAATCATACACCACATG 58.555 41.667 0.00 0.00 0.00 3.21
383 401 5.302568 CCCTTAAATCATACACCACATGCAT 59.697 40.000 0.00 0.00 0.00 3.96
384 402 6.183360 CCCTTAAATCATACACCACATGCATT 60.183 38.462 0.00 0.00 0.00 3.56
386 404 3.720949 ATCATACACCACATGCATTGC 57.279 42.857 0.00 0.46 0.00 3.56
388 406 2.424246 TCATACACCACATGCATTGCAG 59.576 45.455 17.52 11.28 43.65 4.41
389 407 0.527113 TACACCACATGCATTGCAGC 59.473 50.000 17.52 0.00 43.65 5.25
391 409 2.270257 ACCACATGCATTGCAGCGT 61.270 52.632 17.52 13.35 43.65 5.07
393 411 0.170784 CCACATGCATTGCAGCGTAA 59.829 50.000 17.52 0.00 43.65 3.18
406 424 3.266541 CAGCGTAAGTTGCAAATGTGA 57.733 42.857 0.00 0.00 43.00 3.58
410 428 3.603770 GCGTAAGTTGCAAATGTGATCAC 59.396 43.478 19.27 19.27 41.68 3.06
416 434 0.099436 GCAAATGTGATCACGAGGCC 59.901 55.000 20.54 0.00 0.00 5.19
460 496 5.922053 GGTAACTCCCTAATTGAATACGGT 58.078 41.667 0.00 0.00 0.00 4.83
461 497 7.054491 GGTAACTCCCTAATTGAATACGGTA 57.946 40.000 0.00 0.00 0.00 4.02
462 498 7.500141 GGTAACTCCCTAATTGAATACGGTAA 58.500 38.462 0.00 0.00 0.00 2.85
463 499 7.654923 GGTAACTCCCTAATTGAATACGGTAAG 59.345 40.741 0.00 0.00 0.00 2.34
464 500 5.608449 ACTCCCTAATTGAATACGGTAAGC 58.392 41.667 0.00 0.00 0.00 3.09
465 501 5.365895 ACTCCCTAATTGAATACGGTAAGCT 59.634 40.000 0.00 0.00 0.00 3.74
466 502 6.552350 ACTCCCTAATTGAATACGGTAAGCTA 59.448 38.462 0.00 0.00 0.00 3.32
467 503 7.234988 ACTCCCTAATTGAATACGGTAAGCTAT 59.765 37.037 0.00 0.00 0.00 2.97
468 504 8.654485 TCCCTAATTGAATACGGTAAGCTATA 57.346 34.615 0.00 0.00 0.00 1.31
528 564 4.706476 TCCATTTCCAGGTGATGAAACATC 59.294 41.667 4.98 4.98 33.64 3.06
529 565 4.439153 CCATTTCCAGGTGATGAAACATCG 60.439 45.833 7.14 0.00 33.64 3.84
531 567 3.417069 TCCAGGTGATGAAACATCGTT 57.583 42.857 7.14 0.00 0.00 3.85
537 573 4.929808 AGGTGATGAAACATCGTTACTCAC 59.070 41.667 7.14 0.00 0.00 3.51
549 585 1.001633 GTTACTCACGGCCTCAAGGAA 59.998 52.381 0.00 0.00 37.39 3.36
584 621 9.566432 ACTGGGCACAAATTTTATTTGAAAATA 57.434 25.926 16.58 0.00 33.83 1.40
644 685 7.711339 AGCAACCAAACAAGCTCTATATACTAC 59.289 37.037 0.00 0.00 30.05 2.73
645 686 7.494625 GCAACCAAACAAGCTCTATATACTACA 59.505 37.037 0.00 0.00 0.00 2.74
646 687 9.035607 CAACCAAACAAGCTCTATATACTACAG 57.964 37.037 0.00 0.00 0.00 2.74
653 697 8.852135 ACAAGCTCTATATACTACAGGAAAGAC 58.148 37.037 0.00 0.00 0.00 3.01
660 704 9.843334 CTATATACTACAGGAAAGACGAAATCC 57.157 37.037 0.00 0.00 0.00 3.01
663 707 6.210287 ACTACAGGAAAGACGAAATCCTAG 57.790 41.667 0.00 0.00 41.63 3.02
682 726 8.613922 ATCCTAGGAATGAAATCCAACAAAAT 57.386 30.769 17.30 0.00 42.27 1.82
683 727 8.066612 TCCTAGGAATGAAATCCAACAAAATC 57.933 34.615 9.71 0.00 42.27 2.17
703 747 3.686016 TCATTTTGAGTTACAGGCCCTC 58.314 45.455 0.00 0.00 0.00 4.30
711 755 1.072266 TTACAGGCCCTCACCAATGT 58.928 50.000 0.00 0.00 0.00 2.71
712 756 1.959710 TACAGGCCCTCACCAATGTA 58.040 50.000 0.00 0.00 0.00 2.29
751 795 3.753797 AGAGAGGCATTTTTCTTTCGGTC 59.246 43.478 0.00 0.00 0.00 4.79
755 799 3.004734 AGGCATTTTTCTTTCGGTCACAG 59.995 43.478 0.00 0.00 0.00 3.66
758 802 4.497340 GCATTTTTCTTTCGGTCACAGACA 60.497 41.667 0.00 0.00 33.68 3.41
812 876 9.912634 TTCCATTCACAAAATTCAGATAAGAAC 57.087 29.630 0.00 0.00 0.00 3.01
884 948 5.761003 TGTCCGGTACATACAATACATACG 58.239 41.667 0.00 0.00 31.43 3.06
885 949 5.530543 TGTCCGGTACATACAATACATACGA 59.469 40.000 0.00 0.00 31.43 3.43
917 985 5.934402 AAGTGACTCCGTACCTGAATTAT 57.066 39.130 0.00 0.00 0.00 1.28
984 1055 4.935808 AGTAATTACTAGCACCTGCAACAC 59.064 41.667 16.60 0.00 45.16 3.32
1010 1081 2.955660 GTGGACCAAGAATGTTGTCCAA 59.044 45.455 11.46 0.00 41.82 3.53
1024 1095 1.980765 TGTCCAAGAATCTGCAGAGGT 59.019 47.619 22.96 12.55 0.00 3.85
1107 1178 4.436998 CAGCCCGTCCGAGTCCAC 62.437 72.222 0.00 0.00 0.00 4.02
1210 1284 0.528017 GCAGTCTGGTCATGACGAGA 59.472 55.000 29.99 29.99 42.55 4.04
1243 1320 2.265904 CGACGACAGTGTCCCCTCA 61.266 63.158 17.57 0.00 35.40 3.86
1815 1907 2.025767 ATGCAGATCTCGAGCCGCTT 62.026 55.000 7.81 2.94 0.00 4.68
2107 2211 3.900888 AGGAAGGCCTGGTCGAAA 58.099 55.556 5.69 0.00 44.90 3.46
2167 2271 2.413142 GCAGAGGTTGGATGGCAGC 61.413 63.158 0.00 0.00 0.00 5.25
2206 2310 2.000447 GTGTTTCCCGACATAGCTGAC 59.000 52.381 0.00 0.00 0.00 3.51
2218 2322 0.464916 TAGCTGACCGTGATCCGCTA 60.465 55.000 0.00 0.00 39.54 4.26
2287 2391 6.935771 CAGGATCCTTGGATATCTTCTTCTTG 59.064 42.308 13.00 0.00 0.00 3.02
2348 2455 0.887836 ACATGTGACCAGCAGCACTG 60.888 55.000 0.00 0.00 46.77 3.66
2404 2511 4.161333 CGACAGATTTCATTTTGCCAGAC 58.839 43.478 0.00 0.00 0.00 3.51
2677 2784 2.381838 TTTGCTCCTGCGCTGTCTGA 62.382 55.000 9.73 0.00 43.34 3.27
2703 2810 4.655762 TGATGTAGATGAAGAAGGACCG 57.344 45.455 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.468226 TCCAAGCCGGGATGACATAC 59.532 55.000 2.18 0.00 34.36 2.39
1 2 0.758734 CTCCAAGCCGGGATGACATA 59.241 55.000 2.18 0.00 36.09 2.29
2 3 1.528824 CTCCAAGCCGGGATGACAT 59.471 57.895 2.18 0.00 36.09 3.06
3 4 2.989639 CTCCAAGCCGGGATGACA 59.010 61.111 2.18 0.00 36.09 3.58
4 5 2.514824 GCTCCAAGCCGGGATGAC 60.515 66.667 2.18 0.00 36.09 3.06
5 6 2.377810 ATGCTCCAAGCCGGGATGA 61.378 57.895 2.18 0.00 41.51 2.92
6 7 2.191513 CATGCTCCAAGCCGGGATG 61.192 63.158 2.18 0.00 41.51 3.51
7 8 2.194056 CATGCTCCAAGCCGGGAT 59.806 61.111 2.18 0.00 41.51 3.85
8 9 4.113815 CCATGCTCCAAGCCGGGA 62.114 66.667 2.18 0.00 41.51 5.14
9 10 4.431131 ACCATGCTCCAAGCCGGG 62.431 66.667 2.18 6.87 41.51 5.73
10 11 3.136123 CACCATGCTCCAAGCCGG 61.136 66.667 0.00 0.00 41.51 6.13
11 12 2.046023 TCACCATGCTCCAAGCCG 60.046 61.111 0.00 0.00 41.51 5.52
12 13 2.401766 CGTCACCATGCTCCAAGCC 61.402 63.158 0.00 0.00 41.51 4.35
13 14 1.639298 GACGTCACCATGCTCCAAGC 61.639 60.000 11.55 0.00 42.82 4.01
14 15 1.021390 GGACGTCACCATGCTCCAAG 61.021 60.000 18.91 0.00 0.00 3.61
15 16 1.003839 GGACGTCACCATGCTCCAA 60.004 57.895 18.91 0.00 0.00 3.53
16 17 2.662596 GGACGTCACCATGCTCCA 59.337 61.111 18.91 0.00 0.00 3.86
17 18 2.509336 CGGACGTCACCATGCTCC 60.509 66.667 18.91 0.00 0.00 4.70
18 19 1.805945 GTCGGACGTCACCATGCTC 60.806 63.158 18.91 0.00 0.00 4.26
19 20 2.261671 GTCGGACGTCACCATGCT 59.738 61.111 18.91 0.00 0.00 3.79
20 21 3.179265 CGTCGGACGTCACCATGC 61.179 66.667 21.68 0.00 36.74 4.06
30 31 2.183555 GACCCATGGACGTCGGAC 59.816 66.667 15.22 4.36 0.00 4.79
31 32 3.445687 CGACCCATGGACGTCGGA 61.446 66.667 26.72 1.36 46.21 4.55
36 37 0.458260 TGATGTACGACCCATGGACG 59.542 55.000 22.81 22.81 45.28 4.79
37 38 2.102420 TCATGATGTACGACCCATGGAC 59.898 50.000 15.22 3.03 37.55 4.02
38 39 2.365293 CTCATGATGTACGACCCATGGA 59.635 50.000 15.22 0.00 37.55 3.41
39 40 2.548707 CCTCATGATGTACGACCCATGG 60.549 54.545 4.14 4.14 37.55 3.66
40 41 2.759191 CCTCATGATGTACGACCCATG 58.241 52.381 0.00 0.00 38.12 3.66
41 42 1.070758 GCCTCATGATGTACGACCCAT 59.929 52.381 0.00 0.00 0.00 4.00
42 43 0.464036 GCCTCATGATGTACGACCCA 59.536 55.000 0.00 0.00 0.00 4.51
43 44 0.597637 CGCCTCATGATGTACGACCC 60.598 60.000 0.00 0.00 0.00 4.46
44 45 0.597637 CCGCCTCATGATGTACGACC 60.598 60.000 0.00 0.00 0.00 4.79
45 46 1.215655 GCCGCCTCATGATGTACGAC 61.216 60.000 0.00 0.00 0.00 4.34
46 47 1.067416 GCCGCCTCATGATGTACGA 59.933 57.895 0.00 0.00 0.00 3.43
47 48 1.956170 GGCCGCCTCATGATGTACG 60.956 63.158 0.71 0.00 0.00 3.67
48 49 1.598130 GGGCCGCCTCATGATGTAC 60.598 63.158 9.86 0.00 0.00 2.90
49 50 2.828868 GGGCCGCCTCATGATGTA 59.171 61.111 9.86 0.00 0.00 2.29
50 51 4.552365 CGGGCCGCCTCATGATGT 62.552 66.667 15.42 0.00 0.00 3.06
51 52 4.552365 ACGGGCCGCCTCATGATG 62.552 66.667 28.71 0.00 0.00 3.07
52 53 4.241555 GACGGGCCGCCTCATGAT 62.242 66.667 28.71 2.71 0.00 2.45
62 63 4.547367 CAGGGGATTCGACGGGCC 62.547 72.222 0.00 0.00 0.00 5.80
63 64 3.735037 GACAGGGGATTCGACGGGC 62.735 68.421 0.00 0.00 0.00 6.13
64 65 1.614241 AAGACAGGGGATTCGACGGG 61.614 60.000 0.00 0.00 0.00 5.28
65 66 0.460284 CAAGACAGGGGATTCGACGG 60.460 60.000 0.00 0.00 0.00 4.79
66 67 0.460284 CCAAGACAGGGGATTCGACG 60.460 60.000 0.00 0.00 0.00 5.12
67 68 0.613777 ACCAAGACAGGGGATTCGAC 59.386 55.000 0.00 0.00 0.00 4.20
68 69 0.613260 CACCAAGACAGGGGATTCGA 59.387 55.000 0.00 0.00 32.15 3.71
69 70 0.613260 TCACCAAGACAGGGGATTCG 59.387 55.000 0.00 0.00 35.77 3.34
70 71 1.630878 ACTCACCAAGACAGGGGATTC 59.369 52.381 0.00 0.00 41.11 2.52
71 72 1.352352 CACTCACCAAGACAGGGGATT 59.648 52.381 0.00 0.00 41.11 3.01
72 73 0.987294 CACTCACCAAGACAGGGGAT 59.013 55.000 0.00 0.00 41.11 3.85
73 74 1.127567 CCACTCACCAAGACAGGGGA 61.128 60.000 0.00 0.00 39.24 4.81
74 75 1.376466 CCACTCACCAAGACAGGGG 59.624 63.158 0.00 0.00 0.00 4.79
75 76 0.250467 CACCACTCACCAAGACAGGG 60.250 60.000 0.00 0.00 0.00 4.45
76 77 0.758734 TCACCACTCACCAAGACAGG 59.241 55.000 0.00 0.00 0.00 4.00
77 78 1.541233 GGTCACCACTCACCAAGACAG 60.541 57.143 0.00 0.00 32.33 3.51
78 79 0.468226 GGTCACCACTCACCAAGACA 59.532 55.000 0.00 0.00 32.33 3.41
79 80 0.468226 TGGTCACCACTCACCAAGAC 59.532 55.000 0.00 0.00 39.85 3.01
80 81 1.347707 GATGGTCACCACTCACCAAGA 59.652 52.381 0.00 0.00 45.91 3.02
81 82 1.349026 AGATGGTCACCACTCACCAAG 59.651 52.381 0.00 0.00 45.91 3.61
82 83 1.347707 GAGATGGTCACCACTCACCAA 59.652 52.381 17.05 0.00 45.91 3.67
83 84 0.976641 GAGATGGTCACCACTCACCA 59.023 55.000 17.05 0.00 46.84 4.17
84 85 0.976641 TGAGATGGTCACCACTCACC 59.023 55.000 19.48 7.81 37.04 4.02
85 86 2.625737 CATGAGATGGTCACCACTCAC 58.374 52.381 23.47 11.90 41.03 3.51
86 87 1.065926 GCATGAGATGGTCACCACTCA 60.066 52.381 23.31 23.31 41.75 3.41
87 88 1.209019 AGCATGAGATGGTCACCACTC 59.791 52.381 15.75 15.75 38.28 3.51
88 89 1.065636 CAGCATGAGATGGTCACCACT 60.066 52.381 0.00 0.00 39.69 4.00
89 90 1.376543 CAGCATGAGATGGTCACCAC 58.623 55.000 0.00 0.00 39.69 4.16
90 91 0.393402 GCAGCATGAGATGGTCACCA 60.393 55.000 0.00 0.00 39.69 4.17
91 92 1.434622 CGCAGCATGAGATGGTCACC 61.435 60.000 0.00 0.00 38.60 4.02
92 93 0.460811 TCGCAGCATGAGATGGTCAC 60.461 55.000 0.00 0.00 40.97 3.67
93 94 1.899617 TCGCAGCATGAGATGGTCA 59.100 52.632 0.00 0.00 40.97 4.02
94 95 4.842292 TCGCAGCATGAGATGGTC 57.158 55.556 0.00 0.00 40.97 4.02
99 100 0.108472 CAAGAGGTCGCAGCATGAGA 60.108 55.000 0.00 0.00 44.58 3.27
100 101 0.390866 ACAAGAGGTCGCAGCATGAG 60.391 55.000 0.00 0.00 39.69 2.90
101 102 0.894835 TACAAGAGGTCGCAGCATGA 59.105 50.000 0.00 0.00 39.69 3.07
102 103 1.002366 GTACAAGAGGTCGCAGCATG 58.998 55.000 0.00 0.00 40.87 4.06
103 104 0.898320 AGTACAAGAGGTCGCAGCAT 59.102 50.000 0.00 0.00 0.00 3.79
104 105 0.038251 CAGTACAAGAGGTCGCAGCA 60.038 55.000 0.00 0.00 0.00 4.41
105 106 1.355066 GCAGTACAAGAGGTCGCAGC 61.355 60.000 0.00 0.00 0.00 5.25
106 107 0.038251 TGCAGTACAAGAGGTCGCAG 60.038 55.000 0.00 0.00 0.00 5.18
107 108 0.608130 ATGCAGTACAAGAGGTCGCA 59.392 50.000 0.00 0.00 0.00 5.10
108 109 1.281899 GATGCAGTACAAGAGGTCGC 58.718 55.000 0.00 0.00 0.00 5.19
109 110 1.132453 TCGATGCAGTACAAGAGGTCG 59.868 52.381 0.00 0.00 0.00 4.79
110 111 2.803451 CTCGATGCAGTACAAGAGGTC 58.197 52.381 0.00 0.00 35.00 3.85
111 112 1.134965 GCTCGATGCAGTACAAGAGGT 60.135 52.381 0.00 0.00 42.31 3.85
112 113 1.135915 AGCTCGATGCAGTACAAGAGG 59.864 52.381 9.09 0.00 45.94 3.69
113 114 2.191802 CAGCTCGATGCAGTACAAGAG 58.808 52.381 9.09 0.00 45.94 2.85
114 115 1.546029 ACAGCTCGATGCAGTACAAGA 59.454 47.619 9.09 0.00 45.94 3.02
115 116 1.923204 GACAGCTCGATGCAGTACAAG 59.077 52.381 9.09 0.00 41.56 3.16
116 117 1.732405 CGACAGCTCGATGCAGTACAA 60.732 52.381 9.09 0.00 41.56 2.41
117 118 0.179163 CGACAGCTCGATGCAGTACA 60.179 55.000 9.09 0.00 41.56 2.90
118 119 0.867753 CCGACAGCTCGATGCAGTAC 60.868 60.000 9.09 0.00 41.56 2.73
119 120 1.313091 ACCGACAGCTCGATGCAGTA 61.313 55.000 9.09 0.00 41.56 2.74
120 121 2.182791 CCGACAGCTCGATGCAGT 59.817 61.111 9.09 7.03 44.22 4.40
121 122 2.163390 CACCGACAGCTCGATGCAG 61.163 63.158 9.09 4.20 43.06 4.41
122 123 2.125952 CACCGACAGCTCGATGCA 60.126 61.111 9.09 0.00 43.06 3.96
123 124 1.014044 TTTCACCGACAGCTCGATGC 61.014 55.000 0.00 0.00 43.06 3.91
124 125 1.645034 ATTTCACCGACAGCTCGATG 58.355 50.000 0.00 0.00 43.06 3.84
125 126 2.688446 TCTATTTCACCGACAGCTCGAT 59.312 45.455 0.00 0.00 43.06 3.59
126 127 2.089201 TCTATTTCACCGACAGCTCGA 58.911 47.619 0.00 0.00 43.06 4.04
127 128 2.159366 AGTCTATTTCACCGACAGCTCG 60.159 50.000 0.00 0.00 39.83 5.03
128 129 3.512033 AGTCTATTTCACCGACAGCTC 57.488 47.619 0.00 0.00 0.00 4.09
129 130 3.589988 CAAGTCTATTTCACCGACAGCT 58.410 45.455 0.00 0.00 0.00 4.24
130 131 2.673368 CCAAGTCTATTTCACCGACAGC 59.327 50.000 0.00 0.00 0.00 4.40
131 132 2.673368 GCCAAGTCTATTTCACCGACAG 59.327 50.000 0.00 0.00 0.00 3.51
132 133 2.614481 GGCCAAGTCTATTTCACCGACA 60.614 50.000 0.00 0.00 0.00 4.35
133 134 2.007608 GGCCAAGTCTATTTCACCGAC 58.992 52.381 0.00 0.00 0.00 4.79
134 135 1.404986 CGGCCAAGTCTATTTCACCGA 60.405 52.381 2.24 0.00 41.86 4.69
135 136 1.006832 CGGCCAAGTCTATTTCACCG 58.993 55.000 2.24 0.00 0.00 4.94
136 137 1.339727 ACCGGCCAAGTCTATTTCACC 60.340 52.381 0.00 0.00 0.00 4.02
137 138 2.109425 ACCGGCCAAGTCTATTTCAC 57.891 50.000 0.00 0.00 0.00 3.18
138 139 3.262405 AGTTACCGGCCAAGTCTATTTCA 59.738 43.478 0.00 0.00 0.00 2.69
139 140 3.870274 AGTTACCGGCCAAGTCTATTTC 58.130 45.455 0.00 0.00 0.00 2.17
140 141 3.994931 AGTTACCGGCCAAGTCTATTT 57.005 42.857 0.00 0.00 0.00 1.40
141 142 3.262405 TCAAGTTACCGGCCAAGTCTATT 59.738 43.478 0.00 0.00 0.00 1.73
142 143 2.835764 TCAAGTTACCGGCCAAGTCTAT 59.164 45.455 0.00 0.00 0.00 1.98
143 144 2.250031 TCAAGTTACCGGCCAAGTCTA 58.750 47.619 0.00 0.00 0.00 2.59
144 145 1.053424 TCAAGTTACCGGCCAAGTCT 58.947 50.000 0.00 0.00 0.00 3.24
145 146 2.007608 GATCAAGTTACCGGCCAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
146 147 1.349688 TGATCAAGTTACCGGCCAAGT 59.650 47.619 0.00 1.20 0.00 3.16
147 148 2.107950 TGATCAAGTTACCGGCCAAG 57.892 50.000 0.00 0.00 0.00 3.61
148 149 2.570415 TTGATCAAGTTACCGGCCAA 57.430 45.000 3.38 0.00 0.00 4.52
149 150 2.224670 ACTTTGATCAAGTTACCGGCCA 60.225 45.455 8.41 0.00 43.89 5.36
150 151 2.418976 GACTTTGATCAAGTTACCGGCC 59.581 50.000 8.41 0.00 46.53 6.13
151 152 3.071479 TGACTTTGATCAAGTTACCGGC 58.929 45.455 8.41 0.00 46.53 6.13
152 153 4.083484 GGTTGACTTTGATCAAGTTACCGG 60.083 45.833 8.41 0.00 46.53 5.28
153 154 4.083484 GGGTTGACTTTGATCAAGTTACCG 60.083 45.833 8.41 0.00 46.53 4.02
154 155 5.048713 CAGGGTTGACTTTGATCAAGTTACC 60.049 44.000 20.25 20.25 46.53 2.85
155 156 5.531287 ACAGGGTTGACTTTGATCAAGTTAC 59.469 40.000 8.41 10.44 46.53 2.50
156 157 5.690865 ACAGGGTTGACTTTGATCAAGTTA 58.309 37.500 8.41 3.70 46.53 2.24
157 158 4.536765 ACAGGGTTGACTTTGATCAAGTT 58.463 39.130 8.41 0.00 46.53 2.66
159 160 4.261741 CCAACAGGGTTGACTTTGATCAAG 60.262 45.833 8.41 5.87 39.25 3.02
160 161 3.636300 CCAACAGGGTTGACTTTGATCAA 59.364 43.478 3.38 3.38 36.23 2.57
161 162 3.221771 CCAACAGGGTTGACTTTGATCA 58.778 45.455 10.48 0.00 0.00 2.92
162 163 3.923017 CCAACAGGGTTGACTTTGATC 57.077 47.619 10.48 0.00 0.00 2.92
174 175 2.594303 TGCGCTTCACCAACAGGG 60.594 61.111 9.73 0.00 44.81 4.45
175 176 1.572085 CTCTGCGCTTCACCAACAGG 61.572 60.000 9.73 0.00 0.00 4.00
176 177 1.572085 CCTCTGCGCTTCACCAACAG 61.572 60.000 9.73 0.00 0.00 3.16
177 178 1.597854 CCTCTGCGCTTCACCAACA 60.598 57.895 9.73 0.00 0.00 3.33
178 179 2.970974 GCCTCTGCGCTTCACCAAC 61.971 63.158 9.73 0.00 0.00 3.77
179 180 2.669569 GCCTCTGCGCTTCACCAA 60.670 61.111 9.73 0.00 0.00 3.67
180 181 3.939939 TGCCTCTGCGCTTCACCA 61.940 61.111 9.73 0.00 41.78 4.17
181 182 3.426568 GTGCCTCTGCGCTTCACC 61.427 66.667 9.73 0.00 44.66 4.02
188 189 1.672030 TTGATGGTGTGCCTCTGCG 60.672 57.895 0.00 0.00 41.78 5.18
189 190 1.589716 GGTTGATGGTGTGCCTCTGC 61.590 60.000 0.00 0.00 35.27 4.26
190 191 0.962356 GGGTTGATGGTGTGCCTCTG 60.962 60.000 0.00 0.00 35.27 3.35
191 192 1.380302 GGGTTGATGGTGTGCCTCT 59.620 57.895 0.00 0.00 35.27 3.69
192 193 2.040544 CGGGTTGATGGTGTGCCTC 61.041 63.158 0.00 0.00 35.27 4.70
193 194 2.034066 CGGGTTGATGGTGTGCCT 59.966 61.111 0.00 0.00 35.27 4.75
194 195 3.061848 CCGGGTTGATGGTGTGCC 61.062 66.667 0.00 0.00 0.00 5.01
195 196 2.282180 ACCGGGTTGATGGTGTGC 60.282 61.111 6.32 0.00 37.02 4.57
196 197 0.536233 TTGACCGGGTTGATGGTGTG 60.536 55.000 6.32 0.00 38.99 3.82
197 198 0.536460 GTTGACCGGGTTGATGGTGT 60.536 55.000 6.32 0.00 38.99 4.16
198 199 1.573829 CGTTGACCGGGTTGATGGTG 61.574 60.000 6.32 0.00 38.99 4.17
199 200 1.302192 CGTTGACCGGGTTGATGGT 60.302 57.895 6.32 0.00 42.42 3.55
200 201 1.296056 GACGTTGACCGGGTTGATGG 61.296 60.000 6.32 0.00 42.24 3.51
201 202 1.296056 GGACGTTGACCGGGTTGATG 61.296 60.000 6.32 1.19 42.24 3.07
202 203 1.004200 GGACGTTGACCGGGTTGAT 60.004 57.895 6.32 0.00 42.24 2.57
203 204 2.135581 AGGACGTTGACCGGGTTGA 61.136 57.895 6.32 0.00 42.24 3.18
204 205 1.959226 CAGGACGTTGACCGGGTTG 60.959 63.158 6.32 0.00 42.24 3.77
205 206 2.424302 CAGGACGTTGACCGGGTT 59.576 61.111 6.32 0.00 42.24 4.11
206 207 4.309950 GCAGGACGTTGACCGGGT 62.310 66.667 6.32 0.00 42.24 5.28
208 209 4.308458 TGGCAGGACGTTGACCGG 62.308 66.667 0.00 0.00 42.24 5.28
209 210 2.738521 CTGGCAGGACGTTGACCG 60.739 66.667 6.61 0.00 44.03 4.79
210 211 1.374758 CTCTGGCAGGACGTTGACC 60.375 63.158 15.73 0.00 0.00 4.02
211 212 4.268687 CTCTGGCAGGACGTTGAC 57.731 61.111 15.73 0.00 0.00 3.18
219 220 1.378250 CTTTGGCTCCTCTGGCAGG 60.378 63.158 15.73 5.31 45.15 4.85
220 221 2.045131 GCTTTGGCTCCTCTGGCAG 61.045 63.158 8.58 8.58 43.29 4.85
221 222 2.034687 GCTTTGGCTCCTCTGGCA 59.965 61.111 0.00 0.00 40.80 4.92
222 223 2.034687 TGCTTTGGCTCCTCTGGC 59.965 61.111 0.00 0.00 39.59 4.85
223 224 2.045131 GCTGCTTTGGCTCCTCTGG 61.045 63.158 0.00 0.00 39.59 3.86
224 225 1.303074 TGCTGCTTTGGCTCCTCTG 60.303 57.895 0.00 0.00 39.59 3.35
225 226 1.002379 CTGCTGCTTTGGCTCCTCT 60.002 57.895 0.00 0.00 39.59 3.69
226 227 2.698763 GCTGCTGCTTTGGCTCCTC 61.699 63.158 8.53 0.00 39.59 3.71
227 228 2.675772 GCTGCTGCTTTGGCTCCT 60.676 61.111 8.53 0.00 39.59 3.69
228 229 2.987547 TGCTGCTGCTTTGGCTCC 60.988 61.111 17.00 0.00 40.48 4.70
229 230 2.257676 GTGCTGCTGCTTTGGCTC 59.742 61.111 17.00 0.00 40.48 4.70
230 231 3.300765 GGTGCTGCTGCTTTGGCT 61.301 61.111 17.00 0.00 40.48 4.75
231 232 3.608662 TGGTGCTGCTGCTTTGGC 61.609 61.111 17.00 1.05 40.48 4.52
232 233 2.337532 GTGGTGCTGCTGCTTTGG 59.662 61.111 17.00 0.00 40.48 3.28
233 234 1.812686 ATGGTGGTGCTGCTGCTTTG 61.813 55.000 17.00 0.00 40.48 2.77
234 235 1.117142 AATGGTGGTGCTGCTGCTTT 61.117 50.000 17.00 0.00 40.48 3.51
235 236 1.530013 GAATGGTGGTGCTGCTGCTT 61.530 55.000 17.00 0.35 40.48 3.91
236 237 1.975407 GAATGGTGGTGCTGCTGCT 60.975 57.895 17.00 0.00 40.48 4.24
237 238 1.930908 GAGAATGGTGGTGCTGCTGC 61.931 60.000 8.89 8.89 40.20 5.25
238 239 0.322277 AGAGAATGGTGGTGCTGCTG 60.322 55.000 0.00 0.00 0.00 4.41
239 240 0.035630 GAGAGAATGGTGGTGCTGCT 60.036 55.000 0.00 0.00 0.00 4.24
240 241 1.028868 GGAGAGAATGGTGGTGCTGC 61.029 60.000 0.00 0.00 0.00 5.25
241 242 0.617413 AGGAGAGAATGGTGGTGCTG 59.383 55.000 0.00 0.00 0.00 4.41
242 243 1.366319 AAGGAGAGAATGGTGGTGCT 58.634 50.000 0.00 0.00 0.00 4.40
243 244 2.206576 AAAGGAGAGAATGGTGGTGC 57.793 50.000 0.00 0.00 0.00 5.01
244 245 2.744202 CGAAAAGGAGAGAATGGTGGTG 59.256 50.000 0.00 0.00 0.00 4.17
245 246 2.290323 CCGAAAAGGAGAGAATGGTGGT 60.290 50.000 0.00 0.00 45.00 4.16
246 247 2.027192 TCCGAAAAGGAGAGAATGGTGG 60.027 50.000 0.00 0.00 45.98 4.61
247 248 3.334583 TCCGAAAAGGAGAGAATGGTG 57.665 47.619 0.00 0.00 45.98 4.17
258 259 5.751243 TGTCTTTCTTTCTTCCGAAAAGG 57.249 39.130 0.00 0.00 38.58 3.11
259 260 6.853362 GTCATGTCTTTCTTTCTTCCGAAAAG 59.147 38.462 0.00 0.00 38.58 2.27
260 261 6.317642 TGTCATGTCTTTCTTTCTTCCGAAAA 59.682 34.615 0.00 0.00 38.58 2.29
261 262 5.820423 TGTCATGTCTTTCTTTCTTCCGAAA 59.180 36.000 0.00 0.00 37.55 3.46
262 263 5.236478 GTGTCATGTCTTTCTTTCTTCCGAA 59.764 40.000 0.00 0.00 0.00 4.30
263 264 4.750098 GTGTCATGTCTTTCTTTCTTCCGA 59.250 41.667 0.00 0.00 0.00 4.55
264 265 4.752101 AGTGTCATGTCTTTCTTTCTTCCG 59.248 41.667 0.00 0.00 0.00 4.30
265 266 5.529060 ACAGTGTCATGTCTTTCTTTCTTCC 59.471 40.000 0.00 0.00 0.00 3.46
266 267 6.037610 ACACAGTGTCATGTCTTTCTTTCTTC 59.962 38.462 0.00 0.00 0.00 2.87
267 268 5.882557 ACACAGTGTCATGTCTTTCTTTCTT 59.117 36.000 0.00 0.00 0.00 2.52
268 269 5.431765 ACACAGTGTCATGTCTTTCTTTCT 58.568 37.500 0.00 0.00 0.00 2.52
269 270 5.741388 ACACAGTGTCATGTCTTTCTTTC 57.259 39.130 0.00 0.00 0.00 2.62
270 271 5.741388 GACACAGTGTCATGTCTTTCTTT 57.259 39.130 26.12 0.00 46.22 2.52
305 306 7.875041 GGCTCATCACTACATAACTGATATTGT 59.125 37.037 0.00 0.00 0.00 2.71
306 307 8.093307 AGGCTCATCACTACATAACTGATATTG 58.907 37.037 0.00 0.00 0.00 1.90
323 327 2.237893 TGATCAGCTTTCAGGCTCATCA 59.762 45.455 0.00 0.00 45.02 3.07
330 334 1.857217 CGACGATGATCAGCTTTCAGG 59.143 52.381 9.64 0.00 0.00 3.86
344 348 3.148279 GGGGAGGCTGTCGACGAT 61.148 66.667 11.62 0.00 0.00 3.73
347 351 0.611714 TTTAAGGGGAGGCTGTCGAC 59.388 55.000 9.11 9.11 0.00 4.20
348 352 1.485066 GATTTAAGGGGAGGCTGTCGA 59.515 52.381 0.00 0.00 0.00 4.20
349 353 1.209504 TGATTTAAGGGGAGGCTGTCG 59.790 52.381 0.00 0.00 0.00 4.35
350 354 3.584733 ATGATTTAAGGGGAGGCTGTC 57.415 47.619 0.00 0.00 0.00 3.51
352 356 4.137543 GTGTATGATTTAAGGGGAGGCTG 58.862 47.826 0.00 0.00 0.00 4.85
353 357 3.138468 GGTGTATGATTTAAGGGGAGGCT 59.862 47.826 0.00 0.00 0.00 4.58
356 360 5.110814 TGTGGTGTATGATTTAAGGGGAG 57.889 43.478 0.00 0.00 0.00 4.30
359 363 4.644234 TGCATGTGGTGTATGATTTAAGGG 59.356 41.667 0.00 0.00 0.00 3.95
360 364 5.833406 TGCATGTGGTGTATGATTTAAGG 57.167 39.130 0.00 0.00 0.00 2.69
361 365 6.199531 GCAATGCATGTGGTGTATGATTTAAG 59.800 38.462 0.00 0.00 33.12 1.85
363 367 5.126707 TGCAATGCATGTGGTGTATGATTTA 59.873 36.000 2.72 0.00 33.12 1.40
380 398 0.387112 TGCAACTTACGCTGCAATGC 60.387 50.000 0.00 0.00 45.25 3.56
384 402 1.336440 ACATTTGCAACTTACGCTGCA 59.664 42.857 0.00 0.00 46.50 4.41
386 404 3.266541 TCACATTTGCAACTTACGCTG 57.733 42.857 0.00 0.00 0.00 5.18
388 406 3.603770 GTGATCACATTTGCAACTTACGC 59.396 43.478 21.07 0.00 0.00 4.42
389 407 3.840209 CGTGATCACATTTGCAACTTACG 59.160 43.478 24.93 2.55 0.00 3.18
391 409 4.154015 CCTCGTGATCACATTTGCAACTTA 59.846 41.667 24.93 0.00 0.00 2.24
393 411 2.485426 CCTCGTGATCACATTTGCAACT 59.515 45.455 24.93 0.00 0.00 3.16
404 422 1.522092 GTGGATGGCCTCGTGATCA 59.478 57.895 3.32 0.00 34.31 2.92
406 424 2.501128 CGTGGATGGCCTCGTGAT 59.499 61.111 3.32 0.00 44.01 3.06
416 434 2.180017 GCTGGCAAAGCGTGGATG 59.820 61.111 0.00 0.00 43.45 3.51
438 474 7.170489 GCTTACCGTATTCAATTAGGGAGTTAC 59.830 40.741 0.00 0.00 32.62 2.50
441 477 5.365895 AGCTTACCGTATTCAATTAGGGAGT 59.634 40.000 0.00 0.00 32.62 3.85
442 478 5.855045 AGCTTACCGTATTCAATTAGGGAG 58.145 41.667 0.00 0.00 32.62 4.30
449 485 7.122948 CCTCCTCTATAGCTTACCGTATTCAAT 59.877 40.741 0.00 0.00 0.00 2.57
451 487 5.944599 CCTCCTCTATAGCTTACCGTATTCA 59.055 44.000 0.00 0.00 0.00 2.57
452 488 5.163632 GCCTCCTCTATAGCTTACCGTATTC 60.164 48.000 0.00 0.00 0.00 1.75
453 489 4.705991 GCCTCCTCTATAGCTTACCGTATT 59.294 45.833 0.00 0.00 0.00 1.89
454 490 4.263816 TGCCTCCTCTATAGCTTACCGTAT 60.264 45.833 0.00 0.00 0.00 3.06
455 491 3.073503 TGCCTCCTCTATAGCTTACCGTA 59.926 47.826 0.00 0.00 0.00 4.02
456 492 2.158505 TGCCTCCTCTATAGCTTACCGT 60.159 50.000 0.00 0.00 0.00 4.83
457 493 2.229302 GTGCCTCCTCTATAGCTTACCG 59.771 54.545 0.00 0.00 0.00 4.02
458 494 3.257127 CAGTGCCTCCTCTATAGCTTACC 59.743 52.174 0.00 0.00 0.00 2.85
459 495 3.892588 ACAGTGCCTCCTCTATAGCTTAC 59.107 47.826 0.00 0.00 0.00 2.34
460 496 4.186077 ACAGTGCCTCCTCTATAGCTTA 57.814 45.455 0.00 0.00 0.00 3.09
461 497 3.039252 ACAGTGCCTCCTCTATAGCTT 57.961 47.619 0.00 0.00 0.00 3.74
462 498 2.765689 ACAGTGCCTCCTCTATAGCT 57.234 50.000 0.00 0.00 0.00 3.32
463 499 4.939052 TTTACAGTGCCTCCTCTATAGC 57.061 45.455 0.00 0.00 0.00 2.97
464 500 6.276847 CACTTTTACAGTGCCTCCTCTATAG 58.723 44.000 0.00 0.00 46.70 1.31
465 501 6.222038 CACTTTTACAGTGCCTCCTCTATA 57.778 41.667 0.00 0.00 46.70 1.31
466 502 5.091261 CACTTTTACAGTGCCTCCTCTAT 57.909 43.478 0.00 0.00 46.70 1.98
467 503 4.537135 CACTTTTACAGTGCCTCCTCTA 57.463 45.455 0.00 0.00 46.70 2.43
468 504 3.409026 CACTTTTACAGTGCCTCCTCT 57.591 47.619 0.00 0.00 46.70 3.69
529 565 0.606604 TCCTTGAGGCCGTGAGTAAC 59.393 55.000 0.00 0.00 34.44 2.50
531 567 1.568504 ATTCCTTGAGGCCGTGAGTA 58.431 50.000 0.00 0.00 34.44 2.59
584 621 0.761187 ATGGGCAGCTGTGTATCGAT 59.239 50.000 16.64 2.16 0.00 3.59
586 623 2.138320 CTTATGGGCAGCTGTGTATCG 58.862 52.381 16.64 0.00 0.00 2.92
592 633 3.439857 TTCTTTCTTATGGGCAGCTGT 57.560 42.857 16.64 0.00 0.00 4.40
619 660 6.927294 AGTATATAGAGCTTGTTTGGTTGC 57.073 37.500 0.00 0.00 0.00 4.17
644 685 4.737855 TCCTAGGATTTCGTCTTTCCTG 57.262 45.455 7.62 0.00 40.13 3.86
645 686 5.425539 TCATTCCTAGGATTTCGTCTTTCCT 59.574 40.000 13.57 0.00 42.49 3.36
646 687 5.671493 TCATTCCTAGGATTTCGTCTTTCC 58.329 41.667 13.57 0.00 0.00 3.13
653 697 6.318648 TGTTGGATTTCATTCCTAGGATTTCG 59.681 38.462 13.57 1.56 36.68 3.46
660 704 9.880157 AATGATTTTGTTGGATTTCATTCCTAG 57.120 29.630 0.00 0.00 36.68 3.02
663 707 9.615295 CAAAATGATTTTGTTGGATTTCATTCC 57.385 29.630 19.63 0.00 43.77 3.01
682 726 3.073798 TGAGGGCCTGTAACTCAAAATGA 59.926 43.478 12.95 0.00 38.22 2.57
683 727 3.191371 GTGAGGGCCTGTAACTCAAAATG 59.809 47.826 12.95 0.00 42.30 2.32
697 741 0.912486 ACTCTACATTGGTGAGGGCC 59.088 55.000 0.00 0.00 32.58 5.80
703 747 6.366332 GTGTTCTGAACTACTCTACATTGGTG 59.634 42.308 20.18 0.00 0.00 4.17
711 755 5.941058 CCTCTCTGTGTTCTGAACTACTCTA 59.059 44.000 20.18 0.00 0.00 2.43
712 756 4.764823 CCTCTCTGTGTTCTGAACTACTCT 59.235 45.833 20.18 0.00 0.00 3.24
751 795 4.766007 CTTTTCATGTCGTTCTGTCTGTG 58.234 43.478 0.00 0.00 0.00 3.66
755 799 2.411547 CCGCTTTTCATGTCGTTCTGTC 60.412 50.000 0.00 0.00 0.00 3.51
758 802 2.163818 TCCGCTTTTCATGTCGTTCT 57.836 45.000 0.00 0.00 0.00 3.01
788 832 7.485913 CGGTTCTTATCTGAATTTTGTGAATGG 59.514 37.037 0.00 0.00 0.00 3.16
884 948 5.579564 ACGGAGTCACTTATTAGGACTTC 57.420 43.478 0.00 0.00 41.68 3.01
885 949 5.359292 GGTACGGAGTCACTTATTAGGACTT 59.641 44.000 0.00 0.00 43.93 3.01
984 1055 3.253188 ACAACATTCTTGGTCCACATTCG 59.747 43.478 0.00 0.00 0.00 3.34
1024 1095 3.181469 GGTGAAGTTGGACTGTGACAGTA 60.181 47.826 19.46 0.33 45.44 2.74
1243 1320 4.008933 GACACCGGCAGCCTCACT 62.009 66.667 10.54 0.00 0.00 3.41
1815 1907 4.717629 CGCCGCTGTCGTGGAAGA 62.718 66.667 0.00 0.00 43.70 2.87
2041 2145 1.454111 CCTCGGGGAGATCGACAGT 60.454 63.158 0.00 0.00 32.86 3.55
2107 2211 0.400213 TTCAGACCGCCACCAAGAAT 59.600 50.000 0.00 0.00 0.00 2.40
2179 2283 3.862991 TCGGGAAACACGGCCACA 61.863 61.111 2.24 0.00 0.00 4.17
2206 2310 3.677960 CGAGTATAGCGGATCACGG 57.322 57.895 0.00 0.00 44.51 4.94
2218 2322 1.564818 TGGACTCCTCTCACCGAGTAT 59.435 52.381 0.00 0.00 39.44 2.12
2287 2391 5.092781 TGCAAACGAAAGAACAAGAAGAAC 58.907 37.500 0.00 0.00 0.00 3.01
2348 2455 1.282875 GAGCTGTTGGTGGTTTCGC 59.717 57.895 0.00 0.00 0.00 4.70
2427 2534 2.031120 CTCCACTTCCACAAAAGCCAA 58.969 47.619 0.00 0.00 0.00 4.52
2677 2784 6.825721 GGTCCTTCTTCATCTACATCAACAAT 59.174 38.462 0.00 0.00 0.00 2.71
2703 2810 6.874288 ATCCTATTACAAAGCAGAATCAGC 57.126 37.500 0.00 0.00 0.00 4.26
2881 2988 5.290493 TGACCATCACCTATACATCCAAC 57.710 43.478 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.