Multiple sequence alignment - TraesCS5B01G330600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G330600 chr5B 100.000 6336 0 0 1 6336 514933721 514927386 0.000000e+00 11701.0
1 TraesCS5B01G330600 chr5B 84.337 1079 95 35 4031 5065 514854652 514853604 0.000000e+00 989.0
2 TraesCS5B01G330600 chr5B 87.890 545 64 2 5792 6335 698042601 698042058 1.930000e-179 640.0
3 TraesCS5B01G330600 chr5B 86.082 388 44 3 3618 3995 514855112 514854725 5.910000e-110 409.0
4 TraesCS5B01G330600 chr5B 78.011 523 108 7 5794 6313 527079894 527080412 7.920000e-84 322.0
5 TraesCS5B01G330600 chr5B 89.744 78 8 0 1508 1585 514932131 514932208 4.040000e-17 100.0
6 TraesCS5B01G330600 chr5D 96.323 4487 104 17 1 4446 425722494 425718028 0.000000e+00 7315.0
7 TraesCS5B01G330600 chr5D 94.947 1029 33 8 4445 5459 425717924 425716901 0.000000e+00 1594.0
8 TraesCS5B01G330600 chr5D 84.651 1088 116 31 4031 5070 425653482 425652398 0.000000e+00 1037.0
9 TraesCS5B01G330600 chr5D 83.447 441 57 7 3599 4023 425653967 425653527 4.600000e-106 396.0
10 TraesCS5B01G330600 chr5D 88.462 78 9 0 1508 1585 425720898 425720975 1.880000e-15 95.3
11 TraesCS5B01G330600 chr5A 90.317 4038 261 61 1592 5584 539960319 539956367 0.000000e+00 5171.0
12 TraesCS5B01G330600 chr5A 89.545 1540 88 28 7 1488 539961860 539960336 0.000000e+00 1884.0
13 TraesCS5B01G330600 chr5A 81.746 2005 240 81 3438 5373 539947900 539945953 0.000000e+00 1559.0
14 TraesCS5B01G330600 chr7A 79.615 520 103 3 5795 6313 41039771 41039254 2.790000e-98 370.0
15 TraesCS5B01G330600 chr2B 77.778 540 112 7 5787 6321 5788425 5788961 6.130000e-85 326.0
16 TraesCS5B01G330600 chr6A 78.058 515 108 5 5795 6307 472377599 472378110 2.850000e-83 320.0
17 TraesCS5B01G330600 chr2D 77.612 536 110 9 5793 6321 582023925 582023393 3.690000e-82 316.0
18 TraesCS5B01G330600 chr2D 76.876 493 113 1 5792 6284 407215747 407215256 1.740000e-70 278.0
19 TraesCS5B01G330600 chr3D 80.928 388 72 2 5795 6181 486688949 486688563 7.980000e-79 305.0
20 TraesCS5B01G330600 chr3A 80.679 383 74 0 5792 6174 708669951 708670333 1.340000e-76 298.0
21 TraesCS5B01G330600 chr1D 86.765 68 8 1 983 1050 59835510 59835444 2.450000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G330600 chr5B 514927386 514933721 6335 True 11701.0 11701 100.0000 1 6336 1 chr5B.!!$R1 6335
1 TraesCS5B01G330600 chr5B 514853604 514855112 1508 True 699.0 989 85.2095 3618 5065 2 chr5B.!!$R3 1447
2 TraesCS5B01G330600 chr5B 698042058 698042601 543 True 640.0 640 87.8900 5792 6335 1 chr5B.!!$R2 543
3 TraesCS5B01G330600 chr5B 527079894 527080412 518 False 322.0 322 78.0110 5794 6313 1 chr5B.!!$F2 519
4 TraesCS5B01G330600 chr5D 425716901 425722494 5593 True 4454.5 7315 95.6350 1 5459 2 chr5D.!!$R2 5458
5 TraesCS5B01G330600 chr5D 425652398 425653967 1569 True 716.5 1037 84.0490 3599 5070 2 chr5D.!!$R1 1471
6 TraesCS5B01G330600 chr5A 539956367 539961860 5493 True 3527.5 5171 89.9310 7 5584 2 chr5A.!!$R2 5577
7 TraesCS5B01G330600 chr5A 539945953 539947900 1947 True 1559.0 1559 81.7460 3438 5373 1 chr5A.!!$R1 1935
8 TraesCS5B01G330600 chr7A 41039254 41039771 517 True 370.0 370 79.6150 5795 6313 1 chr7A.!!$R1 518
9 TraesCS5B01G330600 chr2B 5788425 5788961 536 False 326.0 326 77.7780 5787 6321 1 chr2B.!!$F1 534
10 TraesCS5B01G330600 chr6A 472377599 472378110 511 False 320.0 320 78.0580 5795 6307 1 chr6A.!!$F1 512
11 TraesCS5B01G330600 chr2D 582023393 582023925 532 True 316.0 316 77.6120 5793 6321 1 chr2D.!!$R2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.530211 ATCTGCTCTGTCTGATGCGC 60.530 55.000 0.00 0.00 0.00 6.09 F
177 178 1.521010 CTCTGTCTGATGCGCCCTG 60.521 63.158 4.18 0.74 0.00 4.45 F
323 329 2.027460 GTGTTGTTTGGGCGGCAG 59.973 61.111 12.47 0.00 0.00 4.85 F
669 710 2.131183 CTACAGCTATTCTCCTTGCGC 58.869 52.381 0.00 0.00 0.00 6.09 F
767 808 3.463944 CCCGCCTATCGTTTTCACTAAT 58.536 45.455 0.00 0.00 36.19 1.73 F
1343 1401 3.469008 TCATATACTTCCAGCCAACGG 57.531 47.619 0.00 0.00 0.00 4.44 F
2787 2876 2.170166 CTAAAGTGGGCTGCAAATCCA 58.830 47.619 0.50 0.00 0.00 3.41 F
3000 3089 2.562738 GGTGCCTACATTTCCTTGCTTT 59.437 45.455 0.00 0.00 0.00 3.51 F
4885 5194 3.491447 GCCTGTGCTGTCTGAAATTGTTT 60.491 43.478 0.00 0.00 33.53 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1628 0.767060 AACCTCCGTCCCAGAAAGGT 60.767 55.000 0.00 0.0 42.08 3.50 R
1614 1675 5.360429 TGGGTTTGACCATGAACATCATATG 59.640 40.000 0.00 0.0 41.02 1.78 R
2187 2249 4.202264 CCTGGTGTGAGTAAAGAGAACAGT 60.202 45.833 0.00 0.0 0.00 3.55 R
2442 2505 2.291365 TGATCGATGGATGGCAGTTTG 58.709 47.619 0.54 0.0 31.51 2.93 R
2708 2797 1.918957 AGACTTTCATTCCTGGGGGAG 59.081 52.381 0.00 0.0 43.29 4.30 R
2949 3038 1.069159 AGAGTAATACGAGGCGATGCG 60.069 52.381 0.00 0.0 0.00 4.73 R
4260 4417 0.324614 TTCATCAGCACCATCCACGT 59.675 50.000 0.00 0.0 0.00 4.49 R
5054 5368 0.760189 ACAGCATTTTGGCACCCTGT 60.760 50.000 0.00 0.0 35.83 4.00 R
5771 6120 0.031585 TCAGACGGACAGAAACGGTG 59.968 55.000 0.00 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.119096 GTTCGTGCGGGCTTCTCC 61.119 66.667 0.00 0.00 0.00 3.71
131 132 2.181021 GACGCCTGATTCGTCGGT 59.819 61.111 0.00 0.00 45.19 4.69
139 140 2.353406 CCTGATTCGTCGGTTTGGTAGT 60.353 50.000 0.00 0.00 0.00 2.73
173 174 0.530211 ATCTGCTCTGTCTGATGCGC 60.530 55.000 0.00 0.00 0.00 6.09
177 178 1.521010 CTCTGTCTGATGCGCCCTG 60.521 63.158 4.18 0.74 0.00 4.45
220 226 3.435671 GGTCAAATCGTGTTTAGTCAGGG 59.564 47.826 0.00 0.00 0.00 4.45
323 329 2.027460 GTGTTGTTTGGGCGGCAG 59.973 61.111 12.47 0.00 0.00 4.85
324 330 3.910490 TGTTGTTTGGGCGGCAGC 61.910 61.111 12.47 0.00 44.18 5.25
342 372 2.937799 CAGCTCTCCTTCAGATTGCTTC 59.062 50.000 0.00 0.00 32.67 3.86
424 464 4.055710 TGGGTAACACTGAGATGACCTA 57.944 45.455 0.00 0.00 39.74 3.08
453 493 5.239525 GTCTGATAATTGCCCCATCACTTAC 59.760 44.000 0.00 0.00 0.00 2.34
488 528 6.477688 CACTTGCAATTTACAATCCATGATCC 59.522 38.462 0.00 0.00 0.00 3.36
669 710 2.131183 CTACAGCTATTCTCCTTGCGC 58.869 52.381 0.00 0.00 0.00 6.09
705 746 8.979574 CCTTTATCTATGTATTTTCAGGACGAC 58.020 37.037 0.00 0.00 0.00 4.34
753 794 6.451292 TTTTATATCATTAACCCCCGCCTA 57.549 37.500 0.00 0.00 0.00 3.93
767 808 3.463944 CCCGCCTATCGTTTTCACTAAT 58.536 45.455 0.00 0.00 36.19 1.73
977 1020 9.806203 TTCATGCCATCTGTATAAATTTGAAAG 57.194 29.630 0.00 0.00 0.00 2.62
980 1023 6.667414 TGCCATCTGTATAAATTTGAAAGGGT 59.333 34.615 0.00 0.00 0.00 4.34
981 1024 7.836685 TGCCATCTGTATAAATTTGAAAGGGTA 59.163 33.333 0.00 0.00 0.00 3.69
982 1025 8.135529 GCCATCTGTATAAATTTGAAAGGGTAC 58.864 37.037 0.00 0.00 0.00 3.34
983 1026 9.184523 CCATCTGTATAAATTTGAAAGGGTACA 57.815 33.333 0.00 0.00 0.00 2.90
1104 1148 9.241919 TGAACAGGATATTTGCAGAAAATAAGA 57.758 29.630 0.00 0.00 42.58 2.10
1208 1266 4.990257 TGCAATTTCTGATAGAAAGCTGC 58.010 39.130 21.89 21.89 46.15 5.25
1343 1401 3.469008 TCATATACTTCCAGCCAACGG 57.531 47.619 0.00 0.00 0.00 4.44
1567 1628 9.661563 TTTCGTATCTAGAAAAATCTAAGGCAA 57.338 29.630 0.00 0.00 35.00 4.52
1614 1675 7.647907 TCTCTTTGTTCGGTTTATAACTGAC 57.352 36.000 0.74 0.00 45.96 3.51
1766 1827 3.736094 TCCTATGTGGGTCAAGAATCCT 58.264 45.455 0.00 0.00 36.20 3.24
1869 1930 7.201565 GCAGTTCACAGTTCTTTATATCCTCAC 60.202 40.741 0.00 0.00 0.00 3.51
2203 2265 4.501571 GCCAGACACTGTTCTCTTTACTCA 60.502 45.833 0.00 0.00 0.00 3.41
2263 2325 7.275779 TCTGCTTCGTAGATTTGTGTTCTTATC 59.724 37.037 0.00 0.00 35.04 1.75
2307 2370 9.994432 GATAATGCAGCTATATTTTACATGGTC 57.006 33.333 0.00 0.00 0.00 4.02
2338 2401 9.868277 ACTTTCTTCTGAACTAGAATATCAGTG 57.132 33.333 0.00 3.72 44.12 3.66
2669 2735 8.575589 TGTGATTATGATGTGCTTTTAACACTT 58.424 29.630 0.00 0.00 38.86 3.16
2787 2876 2.170166 CTAAAGTGGGCTGCAAATCCA 58.830 47.619 0.50 0.00 0.00 3.41
2949 3038 4.260170 AGATTGTGGATCTGCAAGTCTTC 58.740 43.478 8.09 2.58 43.52 2.87
3000 3089 2.562738 GGTGCCTACATTTCCTTGCTTT 59.437 45.455 0.00 0.00 0.00 3.51
3040 3129 4.624913 TCTCATGGAGAAGGTCTGGTAAT 58.375 43.478 0.00 0.00 35.59 1.89
3050 3139 7.418254 GGAGAAGGTCTGGTAATTAATCGGTTA 60.418 40.741 0.00 0.00 0.00 2.85
3361 3450 6.964370 GCTTGTAGTAGTCTATATGATGCTCG 59.036 42.308 0.00 0.00 0.00 5.03
3521 3612 5.992217 GGTGTCTAGCTTTACCCTATCAATG 59.008 44.000 0.00 0.00 0.00 2.82
3677 3771 3.990469 CACTCTGTAGTTGCTTGTGTAGG 59.010 47.826 0.00 0.00 31.97 3.18
3865 3973 5.706916 CTTCCATCCAAGAAAACATCAGTG 58.293 41.667 0.00 0.00 0.00 3.66
4260 4417 9.236006 CAAGGAAGAAGATATGGAGAAAGAAAA 57.764 33.333 0.00 0.00 0.00 2.29
4885 5194 3.491447 GCCTGTGCTGTCTGAAATTGTTT 60.491 43.478 0.00 0.00 33.53 2.83
5054 5368 5.012046 TGGAGAACTTCATAGAAGCTGTGAA 59.988 40.000 6.67 6.48 38.81 3.18
5057 5371 5.931146 AGAACTTCATAGAAGCTGTGAACAG 59.069 40.000 6.08 6.08 46.40 3.16
5092 5406 0.327924 TGGCATCACAAGGTACAGGG 59.672 55.000 0.00 0.00 0.00 4.45
5165 5496 9.458374 GTAGATATTGCTTCTTCTCTAGAACAC 57.542 37.037 0.00 0.00 37.96 3.32
5238 5569 1.196808 ACAACGCAGGCTTGTTAATCG 59.803 47.619 0.00 0.00 0.00 3.34
5245 5576 2.076863 AGGCTTGTTAATCGACAGCAC 58.923 47.619 0.00 0.00 0.00 4.40
5264 5595 3.662186 GCACAAAACGGAATTACGACTTG 59.338 43.478 18.96 19.71 37.61 3.16
5409 5757 2.009051 TGACATCTAAATGCACAGCGG 58.991 47.619 0.00 0.00 36.26 5.52
5423 5771 1.611491 ACAGCGGGTGGTACAAATTTG 59.389 47.619 16.67 16.67 44.16 2.32
5427 5775 1.400500 CGGGTGGTACAAATTTGACGC 60.400 52.381 24.64 17.36 44.16 5.19
5436 5785 0.665835 AAATTTGACGCACGCAAGGA 59.334 45.000 0.00 0.00 46.39 3.36
5453 5802 4.036027 GCAAGGATGTGATATCTGGTGTTG 59.964 45.833 3.98 2.77 0.00 3.33
5459 5808 2.545526 GTGATATCTGGTGTTGGATGCG 59.454 50.000 3.98 0.00 0.00 4.73
5460 5809 2.433970 TGATATCTGGTGTTGGATGCGA 59.566 45.455 3.98 0.00 0.00 5.10
5462 5811 2.198827 ATCTGGTGTTGGATGCGAAA 57.801 45.000 0.00 0.00 0.00 3.46
5465 5814 3.680490 TCTGGTGTTGGATGCGAAATTA 58.320 40.909 0.00 0.00 0.00 1.40
5466 5815 4.269183 TCTGGTGTTGGATGCGAAATTAT 58.731 39.130 0.00 0.00 0.00 1.28
5469 5818 6.545666 TCTGGTGTTGGATGCGAAATTATTAT 59.454 34.615 0.00 0.00 0.00 1.28
5471 5820 6.149633 GGTGTTGGATGCGAAATTATTATCC 58.850 40.000 0.00 0.00 38.20 2.59
5477 5826 6.016360 TGGATGCGAAATTATTATCCCTGTTG 60.016 38.462 0.00 0.00 37.17 3.33
5481 5830 6.375736 TGCGAAATTATTATCCCTGTTGTTCA 59.624 34.615 0.00 0.00 0.00 3.18
5482 5831 7.068103 TGCGAAATTATTATCCCTGTTGTTCAT 59.932 33.333 0.00 0.00 0.00 2.57
5490 5839 4.255833 TCCCTGTTGTTCATTGCAATTC 57.744 40.909 9.83 4.24 0.00 2.17
5495 5844 4.041049 TGTTGTTCATTGCAATTCGTGTC 58.959 39.130 9.83 0.66 0.00 3.67
5500 5849 5.175308 TGTTCATTGCAATTCGTGTCAATTG 59.825 36.000 9.83 0.00 43.79 2.32
5502 5851 4.916831 TCATTGCAATTCGTGTCAATTGAC 59.083 37.500 28.10 28.10 43.70 3.18
5517 5866 1.360820 TTGACGTTGTGCGAACTGAA 58.639 45.000 0.00 0.00 44.77 3.02
5518 5867 1.577468 TGACGTTGTGCGAACTGAAT 58.423 45.000 0.00 0.00 44.77 2.57
5525 5874 4.549599 CGTTGTGCGAACTGAATGATTTAC 59.450 41.667 0.00 0.00 44.77 2.01
5528 5877 6.647212 TGTGCGAACTGAATGATTTACTAG 57.353 37.500 0.00 0.00 0.00 2.57
5529 5878 5.063438 TGTGCGAACTGAATGATTTACTAGC 59.937 40.000 0.00 0.00 0.00 3.42
5531 5880 5.291858 TGCGAACTGAATGATTTACTAGCAG 59.708 40.000 0.00 0.00 0.00 4.24
5533 5882 6.475727 GCGAACTGAATGATTTACTAGCAGTA 59.524 38.462 0.00 0.00 34.38 2.74
5534 5883 7.010183 GCGAACTGAATGATTTACTAGCAGTAA 59.990 37.037 0.00 5.10 38.79 2.24
5535 5884 9.035607 CGAACTGAATGATTTACTAGCAGTAAT 57.964 33.333 8.82 2.21 40.08 1.89
5547 5896 5.431765 ACTAGCAGTAATTTGTGGATGGAG 58.568 41.667 0.00 0.00 0.00 3.86
5548 5897 3.019564 AGCAGTAATTTGTGGATGGAGC 58.980 45.455 0.00 0.00 0.00 4.70
5559 5908 2.599597 ATGGAGCACATCTGCCCC 59.400 61.111 0.00 0.00 45.53 5.80
5562 5911 1.304381 GGAGCACATCTGCCCCAAA 60.304 57.895 0.00 0.00 45.53 3.28
5577 5926 2.305009 CCCAAATCTCAGATTGCTCCC 58.695 52.381 0.00 0.00 0.00 4.30
5584 5933 1.839994 CTCAGATTGCTCCCCCACTTA 59.160 52.381 0.00 0.00 0.00 2.24
5585 5934 1.559682 TCAGATTGCTCCCCCACTTAC 59.440 52.381 0.00 0.00 0.00 2.34
5586 5935 1.561542 CAGATTGCTCCCCCACTTACT 59.438 52.381 0.00 0.00 0.00 2.24
5587 5936 1.561542 AGATTGCTCCCCCACTTACTG 59.438 52.381 0.00 0.00 0.00 2.74
5588 5937 0.625849 ATTGCTCCCCCACTTACTGG 59.374 55.000 0.00 0.00 40.26 4.00
5589 5938 0.474854 TTGCTCCCCCACTTACTGGA 60.475 55.000 0.00 0.00 43.95 3.86
5590 5939 0.253160 TGCTCCCCCACTTACTGGAT 60.253 55.000 0.00 0.00 43.95 3.41
5591 5940 1.009060 TGCTCCCCCACTTACTGGATA 59.991 52.381 0.00 0.00 43.95 2.59
5592 5941 1.694696 GCTCCCCCACTTACTGGATAG 59.305 57.143 0.00 0.00 43.95 2.08
5593 5942 2.960104 GCTCCCCCACTTACTGGATAGT 60.960 54.545 0.00 0.00 43.95 2.12
5594 5943 2.700897 CTCCCCCACTTACTGGATAGTG 59.299 54.545 0.00 0.00 43.95 2.74
5595 5944 2.045326 TCCCCCACTTACTGGATAGTGT 59.955 50.000 0.00 0.00 43.95 3.55
5596 5945 2.844348 CCCCCACTTACTGGATAGTGTT 59.156 50.000 0.00 0.00 43.95 3.32
5597 5946 4.035112 CCCCCACTTACTGGATAGTGTTA 58.965 47.826 0.00 0.00 43.95 2.41
5598 5947 4.472108 CCCCCACTTACTGGATAGTGTTAA 59.528 45.833 0.00 0.00 43.95 2.01
5599 5948 5.045432 CCCCCACTTACTGGATAGTGTTAAA 60.045 44.000 0.00 0.00 43.95 1.52
5600 5949 6.478129 CCCCACTTACTGGATAGTGTTAAAA 58.522 40.000 0.00 0.00 43.95 1.52
5601 5950 6.598064 CCCCACTTACTGGATAGTGTTAAAAG 59.402 42.308 0.00 0.00 43.95 2.27
5602 5951 6.598064 CCCACTTACTGGATAGTGTTAAAAGG 59.402 42.308 0.00 0.00 43.95 3.11
5603 5952 7.166167 CCACTTACTGGATAGTGTTAAAAGGT 58.834 38.462 0.00 0.00 43.95 3.50
5604 5953 7.664318 CCACTTACTGGATAGTGTTAAAAGGTT 59.336 37.037 0.00 0.00 43.95 3.50
5605 5954 9.063615 CACTTACTGGATAGTGTTAAAAGGTTT 57.936 33.333 0.00 0.00 37.78 3.27
5606 5955 9.636789 ACTTACTGGATAGTGTTAAAAGGTTTT 57.363 29.630 0.00 0.00 37.78 2.43
5609 5958 7.948357 ACTGGATAGTGTTAAAAGGTTTTTCC 58.052 34.615 0.00 0.00 35.34 3.13
5610 5959 7.783119 ACTGGATAGTGTTAAAAGGTTTTTCCT 59.217 33.333 0.00 0.00 41.49 3.36
5618 5967 2.365410 AGGTTTTTCCTGCATGCCC 58.635 52.632 16.68 6.22 46.19 5.36
5619 5968 1.079888 GGTTTTTCCTGCATGCCCG 60.080 57.895 16.68 6.15 0.00 6.13
5620 5969 1.737735 GTTTTTCCTGCATGCCCGC 60.738 57.895 16.68 0.00 0.00 6.13
5621 5970 2.205843 TTTTTCCTGCATGCCCGCA 61.206 52.632 16.68 0.00 40.32 5.69
5622 5971 1.543065 TTTTTCCTGCATGCCCGCAT 61.543 50.000 16.68 0.00 42.06 4.73
5629 5978 2.516695 CATGCCCGCATGCTACCA 60.517 61.111 17.13 9.67 45.71 3.25
5630 5979 2.203252 ATGCCCGCATGCTACCAG 60.203 61.111 17.13 0.00 35.03 4.00
5631 5980 2.745308 ATGCCCGCATGCTACCAGA 61.745 57.895 17.13 0.00 35.03 3.86
5632 5981 2.897350 GCCCGCATGCTACCAGAC 60.897 66.667 17.13 0.00 0.00 3.51
5633 5982 2.903357 CCCGCATGCTACCAGACT 59.097 61.111 17.13 0.00 0.00 3.24
5634 5983 1.522355 CCCGCATGCTACCAGACTG 60.522 63.158 17.13 0.00 0.00 3.51
5635 5984 1.517361 CCGCATGCTACCAGACTGA 59.483 57.895 17.13 0.00 0.00 3.41
5636 5985 0.108186 CCGCATGCTACCAGACTGAA 60.108 55.000 17.13 0.00 0.00 3.02
5637 5986 1.473965 CCGCATGCTACCAGACTGAAT 60.474 52.381 17.13 0.00 0.00 2.57
5638 5987 2.283298 CGCATGCTACCAGACTGAATT 58.717 47.619 17.13 0.00 0.00 2.17
5639 5988 2.679837 CGCATGCTACCAGACTGAATTT 59.320 45.455 17.13 0.00 0.00 1.82
5640 5989 3.242543 CGCATGCTACCAGACTGAATTTC 60.243 47.826 17.13 0.00 0.00 2.17
5641 5990 3.944015 GCATGCTACCAGACTGAATTTCT 59.056 43.478 11.37 0.00 0.00 2.52
5642 5991 4.034975 GCATGCTACCAGACTGAATTTCTC 59.965 45.833 11.37 0.00 0.00 2.87
5643 5992 4.890158 TGCTACCAGACTGAATTTCTCA 57.110 40.909 3.32 0.00 0.00 3.27
5644 5993 5.426689 TGCTACCAGACTGAATTTCTCAT 57.573 39.130 3.32 0.00 32.14 2.90
5645 5994 5.423015 TGCTACCAGACTGAATTTCTCATC 58.577 41.667 3.32 0.00 32.14 2.92
5646 5995 5.046376 TGCTACCAGACTGAATTTCTCATCA 60.046 40.000 3.32 0.00 32.14 3.07
5647 5996 5.523188 GCTACCAGACTGAATTTCTCATCAG 59.477 44.000 3.32 1.46 46.69 2.90
5657 6006 7.687941 TGAATTTCTCATCAGTAGTTTTCCC 57.312 36.000 0.00 0.00 0.00 3.97
5658 6007 7.230747 TGAATTTCTCATCAGTAGTTTTCCCA 58.769 34.615 0.00 0.00 0.00 4.37
5659 6008 7.391554 TGAATTTCTCATCAGTAGTTTTCCCAG 59.608 37.037 0.00 0.00 0.00 4.45
5660 6009 4.207891 TCTCATCAGTAGTTTTCCCAGC 57.792 45.455 0.00 0.00 0.00 4.85
5661 6010 3.582647 TCTCATCAGTAGTTTTCCCAGCA 59.417 43.478 0.00 0.00 0.00 4.41
5662 6011 4.041567 TCTCATCAGTAGTTTTCCCAGCAA 59.958 41.667 0.00 0.00 0.00 3.91
5663 6012 4.326826 TCATCAGTAGTTTTCCCAGCAAG 58.673 43.478 0.00 0.00 0.00 4.01
5664 6013 3.857157 TCAGTAGTTTTCCCAGCAAGT 57.143 42.857 0.00 0.00 0.00 3.16
5665 6014 4.164843 TCAGTAGTTTTCCCAGCAAGTT 57.835 40.909 0.00 0.00 0.00 2.66
5666 6015 4.134563 TCAGTAGTTTTCCCAGCAAGTTC 58.865 43.478 0.00 0.00 0.00 3.01
5667 6016 4.137543 CAGTAGTTTTCCCAGCAAGTTCT 58.862 43.478 0.00 0.00 0.00 3.01
5668 6017 4.214332 CAGTAGTTTTCCCAGCAAGTTCTC 59.786 45.833 0.00 0.00 0.00 2.87
5669 6018 3.584733 AGTTTTCCCAGCAAGTTCTCT 57.415 42.857 0.00 0.00 0.00 3.10
5670 6019 3.903467 AGTTTTCCCAGCAAGTTCTCTT 58.097 40.909 0.00 0.00 0.00 2.85
5671 6020 4.281657 AGTTTTCCCAGCAAGTTCTCTTT 58.718 39.130 0.00 0.00 0.00 2.52
5672 6021 5.445964 AGTTTTCCCAGCAAGTTCTCTTTA 58.554 37.500 0.00 0.00 0.00 1.85
5673 6022 5.532779 AGTTTTCCCAGCAAGTTCTCTTTAG 59.467 40.000 0.00 0.00 0.00 1.85
5674 6023 4.706842 TTCCCAGCAAGTTCTCTTTAGT 57.293 40.909 0.00 0.00 0.00 2.24
5675 6024 4.008074 TCCCAGCAAGTTCTCTTTAGTG 57.992 45.455 0.00 0.00 0.00 2.74
5676 6025 3.077359 CCCAGCAAGTTCTCTTTAGTGG 58.923 50.000 0.00 0.00 0.00 4.00
5677 6026 3.496870 CCCAGCAAGTTCTCTTTAGTGGT 60.497 47.826 0.00 0.00 0.00 4.16
5678 6027 3.499918 CCAGCAAGTTCTCTTTAGTGGTG 59.500 47.826 0.00 0.00 0.00 4.17
5679 6028 4.130118 CAGCAAGTTCTCTTTAGTGGTGT 58.870 43.478 0.00 0.00 0.00 4.16
5680 6029 4.212214 CAGCAAGTTCTCTTTAGTGGTGTC 59.788 45.833 0.00 0.00 0.00 3.67
5681 6030 3.498777 GCAAGTTCTCTTTAGTGGTGTCC 59.501 47.826 0.00 0.00 0.00 4.02
5682 6031 4.065789 CAAGTTCTCTTTAGTGGTGTCCC 58.934 47.826 0.00 0.00 0.00 4.46
5683 6032 2.638363 AGTTCTCTTTAGTGGTGTCCCC 59.362 50.000 0.00 0.00 0.00 4.81
5684 6033 2.370849 GTTCTCTTTAGTGGTGTCCCCA 59.629 50.000 0.00 0.00 42.51 4.96
5685 6034 2.257207 TCTCTTTAGTGGTGTCCCCAG 58.743 52.381 0.00 0.00 46.45 4.45
5686 6035 0.690762 TCTTTAGTGGTGTCCCCAGC 59.309 55.000 0.00 0.00 46.45 4.85
5687 6036 0.400213 CTTTAGTGGTGTCCCCAGCA 59.600 55.000 0.00 0.00 46.45 4.41
5691 6040 3.341270 TGGTGTCCCCAGCAAGTT 58.659 55.556 0.00 0.00 45.54 2.66
5692 6041 1.150536 TGGTGTCCCCAGCAAGTTC 59.849 57.895 0.00 0.00 45.54 3.01
5693 6042 1.352622 TGGTGTCCCCAGCAAGTTCT 61.353 55.000 0.00 0.00 45.54 3.01
5694 6043 0.178990 GGTGTCCCCAGCAAGTTCTT 60.179 55.000 0.00 0.00 38.94 2.52
5695 6044 1.239347 GTGTCCCCAGCAAGTTCTTC 58.761 55.000 0.00 0.00 0.00 2.87
5696 6045 0.110486 TGTCCCCAGCAAGTTCTTCC 59.890 55.000 0.00 0.00 0.00 3.46
5697 6046 0.609406 GTCCCCAGCAAGTTCTTCCC 60.609 60.000 0.00 0.00 0.00 3.97
5698 6047 1.065410 TCCCCAGCAAGTTCTTCCCA 61.065 55.000 0.00 0.00 0.00 4.37
5699 6048 0.040204 CCCCAGCAAGTTCTTCCCAT 59.960 55.000 0.00 0.00 0.00 4.00
5700 6049 1.467920 CCCAGCAAGTTCTTCCCATC 58.532 55.000 0.00 0.00 0.00 3.51
5701 6050 1.272092 CCCAGCAAGTTCTTCCCATCA 60.272 52.381 0.00 0.00 0.00 3.07
5702 6051 2.517959 CCAGCAAGTTCTTCCCATCAA 58.482 47.619 0.00 0.00 0.00 2.57
5703 6052 3.094572 CCAGCAAGTTCTTCCCATCAAT 58.905 45.455 0.00 0.00 0.00 2.57
5704 6053 4.272489 CCAGCAAGTTCTTCCCATCAATA 58.728 43.478 0.00 0.00 0.00 1.90
5705 6054 4.337555 CCAGCAAGTTCTTCCCATCAATAG 59.662 45.833 0.00 0.00 0.00 1.73
5706 6055 4.946157 CAGCAAGTTCTTCCCATCAATAGT 59.054 41.667 0.00 0.00 0.00 2.12
5707 6056 5.065731 CAGCAAGTTCTTCCCATCAATAGTC 59.934 44.000 0.00 0.00 0.00 2.59
5708 6057 4.336713 GCAAGTTCTTCCCATCAATAGTCC 59.663 45.833 0.00 0.00 0.00 3.85
5709 6058 5.500234 CAAGTTCTTCCCATCAATAGTCCA 58.500 41.667 0.00 0.00 0.00 4.02
5710 6059 5.779241 AGTTCTTCCCATCAATAGTCCAA 57.221 39.130 0.00 0.00 0.00 3.53
5711 6060 6.139679 AGTTCTTCCCATCAATAGTCCAAA 57.860 37.500 0.00 0.00 0.00 3.28
5712 6061 6.735556 AGTTCTTCCCATCAATAGTCCAAAT 58.264 36.000 0.00 0.00 0.00 2.32
5713 6062 7.184862 AGTTCTTCCCATCAATAGTCCAAATT 58.815 34.615 0.00 0.00 0.00 1.82
5714 6063 7.123247 AGTTCTTCCCATCAATAGTCCAAATTG 59.877 37.037 0.00 0.00 35.98 2.32
5715 6064 6.730447 TCTTCCCATCAATAGTCCAAATTGA 58.270 36.000 0.00 1.37 44.92 2.57
5716 6065 7.181361 TCTTCCCATCAATAGTCCAAATTGAA 58.819 34.615 0.00 0.00 44.25 2.69
5717 6066 7.840716 TCTTCCCATCAATAGTCCAAATTGAAT 59.159 33.333 0.00 0.00 44.25 2.57
5718 6067 7.976414 TCCCATCAATAGTCCAAATTGAATT 57.024 32.000 0.00 0.00 44.25 2.17
5719 6068 8.378115 TCCCATCAATAGTCCAAATTGAATTT 57.622 30.769 0.00 0.00 44.25 1.82
5720 6069 8.824783 TCCCATCAATAGTCCAAATTGAATTTT 58.175 29.630 0.00 0.00 44.25 1.82
5724 6073 9.822185 ATCAATAGTCCAAATTGAATTTTAGGC 57.178 29.630 0.00 0.00 44.25 3.93
5725 6074 8.257306 TCAATAGTCCAAATTGAATTTTAGGCC 58.743 33.333 0.00 0.00 39.70 5.19
5726 6075 5.072040 AGTCCAAATTGAATTTTAGGCCG 57.928 39.130 0.00 0.00 0.00 6.13
5727 6076 4.526650 AGTCCAAATTGAATTTTAGGCCGT 59.473 37.500 0.00 0.00 0.00 5.68
5728 6077 5.011635 AGTCCAAATTGAATTTTAGGCCGTT 59.988 36.000 0.00 0.00 0.00 4.44
5729 6078 5.699001 GTCCAAATTGAATTTTAGGCCGTTT 59.301 36.000 0.00 0.00 0.00 3.60
5730 6079 5.698545 TCCAAATTGAATTTTAGGCCGTTTG 59.301 36.000 0.00 0.00 0.00 2.93
5731 6080 5.381477 CAAATTGAATTTTAGGCCGTTTGC 58.619 37.500 0.00 0.00 40.16 3.68
5732 6081 4.535526 ATTGAATTTTAGGCCGTTTGCT 57.464 36.364 0.00 0.00 40.92 3.91
5733 6082 4.329462 TTGAATTTTAGGCCGTTTGCTT 57.671 36.364 0.00 0.00 40.92 3.91
5734 6083 4.329462 TGAATTTTAGGCCGTTTGCTTT 57.671 36.364 0.00 0.00 40.92 3.51
5735 6084 4.698575 TGAATTTTAGGCCGTTTGCTTTT 58.301 34.783 0.00 0.00 40.92 2.27
5736 6085 5.119694 TGAATTTTAGGCCGTTTGCTTTTT 58.880 33.333 0.00 0.00 40.92 1.94
5757 6106 4.635833 TTTGACCTAACAAAAACCCGTC 57.364 40.909 0.00 0.00 36.92 4.79
5758 6107 3.278668 TGACCTAACAAAAACCCGTCA 57.721 42.857 0.00 0.00 0.00 4.35
5759 6108 3.207778 TGACCTAACAAAAACCCGTCAG 58.792 45.455 0.00 0.00 0.00 3.51
5760 6109 3.118334 TGACCTAACAAAAACCCGTCAGA 60.118 43.478 0.00 0.00 0.00 3.27
5761 6110 4.070009 GACCTAACAAAAACCCGTCAGAT 58.930 43.478 0.00 0.00 0.00 2.90
5762 6111 4.466827 ACCTAACAAAAACCCGTCAGATT 58.533 39.130 0.00 0.00 0.00 2.40
5763 6112 4.891168 ACCTAACAAAAACCCGTCAGATTT 59.109 37.500 0.00 0.00 0.00 2.17
5764 6113 5.219633 CCTAACAAAAACCCGTCAGATTTG 58.780 41.667 0.00 0.00 37.10 2.32
5765 6114 3.726291 ACAAAAACCCGTCAGATTTGG 57.274 42.857 0.00 0.00 35.77 3.28
5766 6115 2.223947 ACAAAAACCCGTCAGATTTGGC 60.224 45.455 0.00 0.00 35.77 4.52
5771 6120 3.508840 CGTCAGATTTGGCGCCCC 61.509 66.667 26.77 10.65 46.30 5.80
5772 6121 2.361104 GTCAGATTTGGCGCCCCA 60.361 61.111 26.77 11.16 40.06 4.96
5773 6122 2.361104 TCAGATTTGGCGCCCCAC 60.361 61.111 26.77 12.86 41.97 4.61
5774 6123 3.451894 CAGATTTGGCGCCCCACC 61.452 66.667 26.77 11.04 41.97 4.61
5777 6126 4.986708 ATTTGGCGCCCCACCGTT 62.987 61.111 26.77 0.00 41.97 4.44
5783 6132 3.047877 CGCCCCACCGTTTCTGTC 61.048 66.667 0.00 0.00 0.00 3.51
5784 6133 2.671963 GCCCCACCGTTTCTGTCC 60.672 66.667 0.00 0.00 0.00 4.02
5785 6134 2.358247 CCCCACCGTTTCTGTCCG 60.358 66.667 0.00 0.00 0.00 4.79
5786 6135 2.424302 CCCACCGTTTCTGTCCGT 59.576 61.111 0.00 0.00 0.00 4.69
5787 6136 1.666872 CCCACCGTTTCTGTCCGTC 60.667 63.158 0.00 0.00 0.00 4.79
5788 6137 1.366366 CCACCGTTTCTGTCCGTCT 59.634 57.895 0.00 0.00 0.00 4.18
5789 6138 0.944311 CCACCGTTTCTGTCCGTCTG 60.944 60.000 0.00 0.00 0.00 3.51
5790 6139 0.031585 CACCGTTTCTGTCCGTCTGA 59.968 55.000 0.00 0.00 0.00 3.27
5885 6234 2.871453 GGTGACCTAACCAAACATGGT 58.129 47.619 0.00 0.00 45.55 3.55
5900 6249 1.143684 CATGGTGGTCCTCCCCTAATG 59.856 57.143 7.53 1.15 34.23 1.90
5911 6260 3.371917 CCTCCCCTAATGTCAAAGCATGA 60.372 47.826 0.00 0.00 35.05 3.07
6028 6377 2.844839 GCTCCATACTCCGCCCCT 60.845 66.667 0.00 0.00 0.00 4.79
6048 6397 4.643784 CCCTCTCTTTTGCTTGATGCTATT 59.356 41.667 0.00 0.00 43.37 1.73
6059 6408 3.777106 TGATGCTATTGATGACCTCCC 57.223 47.619 0.00 0.00 0.00 4.30
6064 6413 2.809665 GCTATTGATGACCTCCCTGCAG 60.810 54.545 6.78 6.78 0.00 4.41
6085 6434 0.387202 CTGAGGCTACGTGGATGGAG 59.613 60.000 1.81 0.00 0.00 3.86
6114 6463 0.689080 AGATCCTCCGACAGTGCCAT 60.689 55.000 0.00 0.00 0.00 4.40
6190 6540 0.958091 CCATTGTTGACGCTCCCAAA 59.042 50.000 0.00 0.00 0.00 3.28
6193 6543 2.861462 TTGTTGACGCTCCCAAAAAG 57.139 45.000 0.00 0.00 0.00 2.27
6199 6549 4.069232 GCTCCCAAAAAGGCGCCC 62.069 66.667 26.15 5.07 35.39 6.13
6225 6575 2.049063 CCTGGCTATAGCGGCGAC 60.049 66.667 18.30 1.23 43.26 5.19
6229 6579 3.100191 GCTATAGCGGCGACTGCG 61.100 66.667 12.98 0.00 44.10 5.18
6250 6600 1.071471 CACCCCACGTCTTTCTGCT 59.929 57.895 0.00 0.00 0.00 4.24
6252 6602 1.053424 ACCCCACGTCTTTCTGCTAA 58.947 50.000 0.00 0.00 0.00 3.09
6285 6635 5.278266 CCACGTTGAGTTTTGACATATTGGT 60.278 40.000 0.00 0.00 0.00 3.67
6318 6668 3.420839 CCACTGTTTTGGTCTGTTCAC 57.579 47.619 0.00 0.00 0.00 3.18
6321 6671 3.443681 CACTGTTTTGGTCTGTTCACCTT 59.556 43.478 0.00 0.00 37.34 3.50
6324 6674 3.945285 TGTTTTGGTCTGTTCACCTTCTC 59.055 43.478 0.00 0.00 37.34 2.87
6329 6679 2.416162 GGTCTGTTCACCTTCTCGCTAG 60.416 54.545 0.00 0.00 33.08 3.42
6335 6685 0.378962 CACCTTCTCGCTAGACCTCG 59.621 60.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 0.028242 CGCACAAACGCACTACCAAA 59.972 50.000 0.00 0.00 0.00 3.28
139 140 1.663388 AGATCGACGCACAAACGCA 60.663 52.632 0.00 0.00 36.19 5.24
173 174 4.240096 GACAGCAAAATGAAACATCAGGG 58.760 43.478 0.00 0.00 0.00 4.45
177 178 5.232463 ACCATGACAGCAAAATGAAACATC 58.768 37.500 0.00 0.00 0.00 3.06
220 226 1.459756 CGATTCACGAACATGCATGC 58.540 50.000 26.53 11.82 45.77 4.06
323 329 1.932511 CGAAGCAATCTGAAGGAGAGC 59.067 52.381 0.00 0.00 32.80 4.09
324 330 3.244033 ACGAAGCAATCTGAAGGAGAG 57.756 47.619 0.00 0.00 32.80 3.20
396 436 7.047891 GTCATCTCAGTGTTACCCAATATGAA 58.952 38.462 0.00 0.00 0.00 2.57
424 464 6.435277 GTGATGGGGCAATTATCAGACAATAT 59.565 38.462 0.00 0.00 32.00 1.28
488 528 2.162408 GCAGGTTTCTTCTTTGGGATCG 59.838 50.000 0.00 0.00 0.00 3.69
528 568 1.343465 CTCAAGGGTCACGTTGGTACT 59.657 52.381 0.00 0.00 41.51 2.73
729 770 5.707495 AGGCGGGGGTTAATGATATAAAAA 58.293 37.500 0.00 0.00 0.00 1.94
746 787 2.589798 TAGTGAAAACGATAGGCGGG 57.410 50.000 0.00 0.00 46.49 6.13
747 788 5.064198 TCAAATTAGTGAAAACGATAGGCGG 59.936 40.000 0.00 0.00 46.49 6.13
748 789 6.539324 TTCAAATTAGTGAAAACGATAGGCG 58.461 36.000 0.00 0.00 39.15 5.52
753 794 7.040409 AGGCTCTTTCAAATTAGTGAAAACGAT 60.040 33.333 6.73 0.00 44.66 3.73
921 963 8.401490 TCCCCGATTTATACTAGTAGTTCTTC 57.599 38.462 8.40 1.51 0.00 2.87
976 1019 8.466617 TGTTGTTGTTATTGTTATTGTACCCT 57.533 30.769 0.00 0.00 0.00 4.34
977 1020 7.327518 GCTGTTGTTGTTATTGTTATTGTACCC 59.672 37.037 0.00 0.00 0.00 3.69
980 1023 9.239002 GTTGCTGTTGTTGTTATTGTTATTGTA 57.761 29.630 0.00 0.00 0.00 2.41
981 1024 7.761704 TGTTGCTGTTGTTGTTATTGTTATTGT 59.238 29.630 0.00 0.00 0.00 2.71
982 1025 8.124586 TGTTGCTGTTGTTGTTATTGTTATTG 57.875 30.769 0.00 0.00 0.00 1.90
983 1026 8.709386 TTGTTGCTGTTGTTGTTATTGTTATT 57.291 26.923 0.00 0.00 0.00 1.40
984 1027 8.709386 TTTGTTGCTGTTGTTGTTATTGTTAT 57.291 26.923 0.00 0.00 0.00 1.89
985 1028 7.201478 GCTTTGTTGCTGTTGTTGTTATTGTTA 60.201 33.333 0.00 0.00 0.00 2.41
986 1029 6.402011 GCTTTGTTGCTGTTGTTGTTATTGTT 60.402 34.615 0.00 0.00 0.00 2.83
1024 1067 3.786553 TCTCTAGCCTAACCCAACTTGA 58.213 45.455 0.00 0.00 0.00 3.02
1327 1385 1.559682 ACATCCGTTGGCTGGAAGTAT 59.440 47.619 1.14 0.00 39.39 2.12
1343 1401 2.880890 AGAAACTGCACACCTTGACATC 59.119 45.455 0.00 0.00 0.00 3.06
1495 1555 5.075493 CGGAGGGAGTATAAGCTTAAGGTA 58.925 45.833 10.85 0.00 0.00 3.08
1567 1628 0.767060 AACCTCCGTCCCAGAAAGGT 60.767 55.000 0.00 0.00 42.08 3.50
1614 1675 5.360429 TGGGTTTGACCATGAACATCATATG 59.640 40.000 0.00 0.00 41.02 1.78
1766 1827 6.314917 TGGGAAGCATACTCTATCATAGTCA 58.685 40.000 0.00 0.00 0.00 3.41
1820 1881 8.741101 TGCTACAACTTAAATACATGCTTTTG 57.259 30.769 0.00 0.00 0.00 2.44
1824 1885 7.390440 TGAACTGCTACAACTTAAATACATGCT 59.610 33.333 0.00 0.00 0.00 3.79
1869 1930 5.660460 ACCTAACAACAAAAAGCAAGGAAG 58.340 37.500 0.00 0.00 0.00 3.46
2187 2249 4.202264 CCTGGTGTGAGTAAAGAGAACAGT 60.202 45.833 0.00 0.00 0.00 3.55
2338 2401 6.421501 TCACAAATTCATGCACAATTCTTCAC 59.578 34.615 6.03 0.00 0.00 3.18
2442 2505 2.291365 TGATCGATGGATGGCAGTTTG 58.709 47.619 0.54 0.00 31.51 2.93
2634 2700 7.978982 AGCACATCATAATCACAAGTAGAAAC 58.021 34.615 0.00 0.00 0.00 2.78
2637 2703 8.565896 AAAAGCACATCATAATCACAAGTAGA 57.434 30.769 0.00 0.00 0.00 2.59
2640 2706 8.575589 TGTTAAAAGCACATCATAATCACAAGT 58.424 29.630 0.00 0.00 0.00 3.16
2641 2707 8.853345 GTGTTAAAAGCACATCATAATCACAAG 58.147 33.333 0.00 0.00 36.88 3.16
2642 2708 8.575589 AGTGTTAAAAGCACATCATAATCACAA 58.424 29.630 0.00 0.00 39.17 3.33
2643 2709 8.109705 AGTGTTAAAAGCACATCATAATCACA 57.890 30.769 0.00 0.00 39.17 3.58
2669 2735 5.252547 ACATAATGTAACACCAGCACATGA 58.747 37.500 0.00 0.00 33.31 3.07
2708 2797 1.918957 AGACTTTCATTCCTGGGGGAG 59.081 52.381 0.00 0.00 43.29 4.30
2787 2876 4.615912 GCCTTCGCAACAACAGTGATATTT 60.616 41.667 0.00 0.00 34.03 1.40
2949 3038 1.069159 AGAGTAATACGAGGCGATGCG 60.069 52.381 0.00 0.00 0.00 4.73
3000 3089 6.988580 CCATGAGAGAAACACTGATATTAGCA 59.011 38.462 0.00 0.00 0.00 3.49
3050 3139 6.784969 AGTGATCAGCAGGGTAGTAAGAATAT 59.215 38.462 0.00 0.00 0.00 1.28
3361 3450 1.456544 CAATGTGGTGTCATTTTGCGC 59.543 47.619 0.00 0.00 36.10 6.09
3389 3478 6.299141 ACAAGGCAGAAAATCAAGACTTAGA 58.701 36.000 0.00 0.00 0.00 2.10
3539 3630 6.144577 GCAAATGCACAAAACAGATTAGTC 57.855 37.500 0.00 0.00 41.59 2.59
3663 3757 2.364972 AAAGCCCTACACAAGCAACT 57.635 45.000 0.00 0.00 0.00 3.16
3677 3771 8.603181 CCATTAGCAACACATATTTTAAAAGCC 58.397 33.333 6.79 0.00 0.00 4.35
3865 3973 1.268437 GGATTGAGATTGCTGCGCTTC 60.268 52.381 9.73 0.00 0.00 3.86
3969 4077 5.324409 ACTTCATGAACAAAGGAAGCCATA 58.676 37.500 3.38 0.00 40.21 2.74
4260 4417 0.324614 TTCATCAGCACCATCCACGT 59.675 50.000 0.00 0.00 0.00 4.49
5054 5368 0.760189 ACAGCATTTTGGCACCCTGT 60.760 50.000 0.00 0.00 35.83 4.00
5057 5371 1.004679 CCACAGCATTTTGGCACCC 60.005 57.895 0.00 0.00 35.83 4.61
5165 5496 5.640189 AATCTCAACAAAGATCAAGCAGG 57.360 39.130 0.00 0.00 34.90 4.85
5238 5569 3.059461 TCGTAATTCCGTTTTGTGCTGTC 60.059 43.478 0.00 0.00 0.00 3.51
5245 5576 5.740099 ACAAACAAGTCGTAATTCCGTTTTG 59.260 36.000 7.63 7.63 0.00 2.44
5264 5595 1.947456 GAGAACCCTGTCACCACAAAC 59.053 52.381 0.00 0.00 29.82 2.93
5352 5688 1.066257 CACAGGTGGTGCAAAGTGC 59.934 57.895 0.00 0.00 45.29 4.40
5409 5757 2.657184 GTGCGTCAAATTTGTACCACC 58.343 47.619 17.47 4.30 0.00 4.61
5423 5771 1.361668 ATCACATCCTTGCGTGCGTC 61.362 55.000 0.00 0.00 33.03 5.19
5427 5775 2.804527 CCAGATATCACATCCTTGCGTG 59.195 50.000 5.32 0.00 34.34 5.34
5436 5785 4.139786 GCATCCAACACCAGATATCACAT 58.860 43.478 5.32 0.00 0.00 3.21
5453 5802 6.016276 ACAACAGGGATAATAATTTCGCATCC 60.016 38.462 0.00 0.00 35.44 3.51
5459 5808 9.034544 GCAATGAACAACAGGGATAATAATTTC 57.965 33.333 0.00 0.00 0.00 2.17
5460 5809 8.538701 TGCAATGAACAACAGGGATAATAATTT 58.461 29.630 0.00 0.00 0.00 1.82
5462 5811 7.658525 TGCAATGAACAACAGGGATAATAAT 57.341 32.000 0.00 0.00 0.00 1.28
5465 5814 5.999205 TTGCAATGAACAACAGGGATAAT 57.001 34.783 0.00 0.00 0.00 1.28
5466 5815 5.999205 ATTGCAATGAACAACAGGGATAA 57.001 34.783 12.09 0.00 0.00 1.75
5469 5818 3.305267 CGAATTGCAATGAACAACAGGGA 60.305 43.478 13.82 0.00 0.00 4.20
5471 5820 3.426191 CACGAATTGCAATGAACAACAGG 59.574 43.478 13.82 0.00 0.00 4.00
5477 5826 5.401972 TCAATTGACACGAATTGCAATGAAC 59.598 36.000 13.82 7.05 41.31 3.18
5481 5830 3.913763 CGTCAATTGACACGAATTGCAAT 59.086 39.130 32.06 5.99 44.99 3.56
5482 5831 3.242903 ACGTCAATTGACACGAATTGCAA 60.243 39.130 32.06 0.00 44.99 4.08
5490 5839 1.385038 GCACAACGTCAATTGACACG 58.615 50.000 32.06 23.99 44.99 4.49
5495 5844 2.036217 CAGTTCGCACAACGTCAATTG 58.964 47.619 0.00 0.00 44.19 2.32
5500 5849 1.525197 TCATTCAGTTCGCACAACGTC 59.475 47.619 0.00 0.00 44.19 4.34
5502 5851 2.880822 ATCATTCAGTTCGCACAACG 57.119 45.000 0.00 0.00 45.62 4.10
5505 5854 5.063438 GCTAGTAAATCATTCAGTTCGCACA 59.937 40.000 0.00 0.00 0.00 4.57
5507 5856 5.175127 TGCTAGTAAATCATTCAGTTCGCA 58.825 37.500 0.00 0.00 0.00 5.10
5517 5866 9.632638 ATCCACAAATTACTGCTAGTAAATCAT 57.367 29.630 11.18 0.00 43.16 2.45
5518 5867 8.892723 CATCCACAAATTACTGCTAGTAAATCA 58.107 33.333 11.18 0.00 43.16 2.57
5525 5874 4.274459 GCTCCATCCACAAATTACTGCTAG 59.726 45.833 0.00 0.00 0.00 3.42
5528 5877 2.754552 TGCTCCATCCACAAATTACTGC 59.245 45.455 0.00 0.00 0.00 4.40
5529 5878 3.758023 TGTGCTCCATCCACAAATTACTG 59.242 43.478 0.00 0.00 40.00 2.74
5531 5880 4.925068 GATGTGCTCCATCCACAAATTAC 58.075 43.478 5.85 0.00 45.29 1.89
5548 5897 2.022195 CTGAGATTTGGGGCAGATGTG 58.978 52.381 0.00 0.00 0.00 3.21
5559 5908 2.305009 GGGGGAGCAATCTGAGATTTG 58.695 52.381 4.67 2.93 0.00 2.32
5562 5911 0.842635 GTGGGGGAGCAATCTGAGAT 59.157 55.000 0.00 0.00 0.00 2.75
5584 5933 7.948357 GGAAAAACCTTTTAACACTATCCAGT 58.052 34.615 0.00 0.00 33.29 4.00
5601 5950 1.079888 CGGGCATGCAGGAAAAACC 60.080 57.895 21.36 7.67 39.35 3.27
5602 5951 1.737735 GCGGGCATGCAGGAAAAAC 60.738 57.895 21.36 0.00 34.15 2.43
5603 5952 2.205843 TGCGGGCATGCAGGAAAAA 61.206 52.632 21.36 0.00 40.62 1.94
5604 5953 2.599875 TGCGGGCATGCAGGAAAA 60.600 55.556 21.36 0.00 40.62 2.29
5613 5962 2.203252 CTGGTAGCATGCGGGCAT 60.203 61.111 13.01 0.00 37.08 4.40
5614 5963 3.398310 TCTGGTAGCATGCGGGCA 61.398 61.111 13.01 0.00 35.83 5.36
5615 5964 2.897350 GTCTGGTAGCATGCGGGC 60.897 66.667 13.01 6.35 0.00 6.13
5616 5965 1.522355 CAGTCTGGTAGCATGCGGG 60.522 63.158 13.01 2.20 0.00 6.13
5617 5966 0.108186 TTCAGTCTGGTAGCATGCGG 60.108 55.000 13.01 1.84 0.00 5.69
5618 5967 1.945387 ATTCAGTCTGGTAGCATGCG 58.055 50.000 13.01 0.00 0.00 4.73
5619 5968 3.944015 AGAAATTCAGTCTGGTAGCATGC 59.056 43.478 10.51 10.51 0.00 4.06
5620 5969 5.181009 TGAGAAATTCAGTCTGGTAGCATG 58.819 41.667 0.00 0.00 0.00 4.06
5621 5970 5.426689 TGAGAAATTCAGTCTGGTAGCAT 57.573 39.130 0.00 0.00 0.00 3.79
5622 5971 4.890158 TGAGAAATTCAGTCTGGTAGCA 57.110 40.909 0.00 0.00 0.00 3.49
5623 5972 5.423015 TGATGAGAAATTCAGTCTGGTAGC 58.577 41.667 0.00 0.00 39.68 3.58
5632 5981 7.391554 TGGGAAAACTACTGATGAGAAATTCAG 59.608 37.037 0.00 0.00 43.97 3.02
5633 5982 7.230747 TGGGAAAACTACTGATGAGAAATTCA 58.769 34.615 0.00 0.00 40.85 2.57
5634 5983 7.627300 GCTGGGAAAACTACTGATGAGAAATTC 60.627 40.741 0.00 0.00 0.00 2.17
5635 5984 6.151817 GCTGGGAAAACTACTGATGAGAAATT 59.848 38.462 0.00 0.00 0.00 1.82
5636 5985 5.649831 GCTGGGAAAACTACTGATGAGAAAT 59.350 40.000 0.00 0.00 0.00 2.17
5637 5986 5.003804 GCTGGGAAAACTACTGATGAGAAA 58.996 41.667 0.00 0.00 0.00 2.52
5638 5987 4.041567 TGCTGGGAAAACTACTGATGAGAA 59.958 41.667 0.00 0.00 0.00 2.87
5639 5988 3.582647 TGCTGGGAAAACTACTGATGAGA 59.417 43.478 0.00 0.00 0.00 3.27
5640 5989 3.942829 TGCTGGGAAAACTACTGATGAG 58.057 45.455 0.00 0.00 0.00 2.90
5641 5990 4.202461 ACTTGCTGGGAAAACTACTGATGA 60.202 41.667 0.00 0.00 0.00 2.92
5642 5991 4.074970 ACTTGCTGGGAAAACTACTGATG 58.925 43.478 0.00 0.00 0.00 3.07
5643 5992 4.373156 ACTTGCTGGGAAAACTACTGAT 57.627 40.909 0.00 0.00 0.00 2.90
5644 5993 3.857157 ACTTGCTGGGAAAACTACTGA 57.143 42.857 0.00 0.00 0.00 3.41
5645 5994 4.137543 AGAACTTGCTGGGAAAACTACTG 58.862 43.478 0.00 0.00 0.00 2.74
5646 5995 4.103311 AGAGAACTTGCTGGGAAAACTACT 59.897 41.667 0.00 0.00 0.00 2.57
5647 5996 4.390264 AGAGAACTTGCTGGGAAAACTAC 58.610 43.478 0.00 0.00 0.00 2.73
5648 5997 4.706842 AGAGAACTTGCTGGGAAAACTA 57.293 40.909 0.00 0.00 0.00 2.24
5649 5998 3.584733 AGAGAACTTGCTGGGAAAACT 57.415 42.857 0.00 0.00 0.00 2.66
5650 5999 4.655762 AAAGAGAACTTGCTGGGAAAAC 57.344 40.909 0.00 0.00 36.39 2.43
5651 6000 5.299279 CACTAAAGAGAACTTGCTGGGAAAA 59.701 40.000 0.00 0.00 36.39 2.29
5652 6001 4.821805 CACTAAAGAGAACTTGCTGGGAAA 59.178 41.667 0.00 0.00 36.39 3.13
5653 6002 4.389374 CACTAAAGAGAACTTGCTGGGAA 58.611 43.478 0.00 0.00 36.39 3.97
5654 6003 3.244561 CCACTAAAGAGAACTTGCTGGGA 60.245 47.826 0.00 0.00 36.39 4.37
5655 6004 3.077359 CCACTAAAGAGAACTTGCTGGG 58.923 50.000 0.00 0.00 36.39 4.45
5656 6005 3.499918 CACCACTAAAGAGAACTTGCTGG 59.500 47.826 0.00 0.00 36.39 4.85
5657 6006 4.130118 ACACCACTAAAGAGAACTTGCTG 58.870 43.478 0.00 0.00 36.39 4.41
5658 6007 4.381411 GACACCACTAAAGAGAACTTGCT 58.619 43.478 0.00 0.00 36.39 3.91
5659 6008 3.498777 GGACACCACTAAAGAGAACTTGC 59.501 47.826 0.00 0.00 36.39 4.01
5660 6009 4.065789 GGGACACCACTAAAGAGAACTTG 58.934 47.826 0.00 0.00 34.94 3.16
5661 6010 3.072622 GGGGACACCACTAAAGAGAACTT 59.927 47.826 0.00 0.00 39.85 2.66
5662 6011 2.638363 GGGGACACCACTAAAGAGAACT 59.362 50.000 0.00 0.00 39.85 3.01
5663 6012 2.370849 TGGGGACACCACTAAAGAGAAC 59.629 50.000 0.00 0.00 46.80 3.01
5664 6013 2.637872 CTGGGGACACCACTAAAGAGAA 59.362 50.000 0.00 0.00 46.80 2.87
5665 6014 2.257207 CTGGGGACACCACTAAAGAGA 58.743 52.381 0.00 0.00 46.80 3.10
5666 6015 1.339151 GCTGGGGACACCACTAAAGAG 60.339 57.143 0.00 0.00 46.80 2.85
5667 6016 0.690762 GCTGGGGACACCACTAAAGA 59.309 55.000 0.00 0.00 46.80 2.52
5668 6017 0.400213 TGCTGGGGACACCACTAAAG 59.600 55.000 0.00 0.00 46.80 1.85
5669 6018 0.847373 TTGCTGGGGACACCACTAAA 59.153 50.000 0.00 0.00 46.80 1.85
5670 6019 0.400213 CTTGCTGGGGACACCACTAA 59.600 55.000 0.00 0.00 46.80 2.24
5671 6020 0.766674 ACTTGCTGGGGACACCACTA 60.767 55.000 0.00 0.00 46.80 2.74
5672 6021 1.645402 AACTTGCTGGGGACACCACT 61.645 55.000 0.00 0.00 46.80 4.00
5673 6022 1.152756 AACTTGCTGGGGACACCAC 60.153 57.895 0.00 0.00 46.80 4.16
5675 6024 0.178990 AAGAACTTGCTGGGGACACC 60.179 55.000 0.00 0.00 40.81 4.16
5676 6025 1.239347 GAAGAACTTGCTGGGGACAC 58.761 55.000 0.00 0.00 35.60 3.67
5677 6026 0.110486 GGAAGAACTTGCTGGGGACA 59.890 55.000 0.00 0.00 39.59 4.02
5678 6027 0.609406 GGGAAGAACTTGCTGGGGAC 60.609 60.000 6.09 0.00 0.00 4.46
5679 6028 1.065410 TGGGAAGAACTTGCTGGGGA 61.065 55.000 6.09 0.00 0.00 4.81
5680 6029 0.040204 ATGGGAAGAACTTGCTGGGG 59.960 55.000 6.09 0.00 0.00 4.96
5681 6030 1.272092 TGATGGGAAGAACTTGCTGGG 60.272 52.381 6.09 0.00 0.00 4.45
5682 6031 2.205022 TGATGGGAAGAACTTGCTGG 57.795 50.000 6.09 0.00 0.00 4.85
5683 6032 4.946157 ACTATTGATGGGAAGAACTTGCTG 59.054 41.667 6.09 0.00 0.00 4.41
5684 6033 5.184892 ACTATTGATGGGAAGAACTTGCT 57.815 39.130 6.09 0.00 0.00 3.91
5685 6034 4.336713 GGACTATTGATGGGAAGAACTTGC 59.663 45.833 0.00 0.00 0.00 4.01
5686 6035 5.500234 TGGACTATTGATGGGAAGAACTTG 58.500 41.667 0.00 0.00 0.00 3.16
5687 6036 5.779241 TGGACTATTGATGGGAAGAACTT 57.221 39.130 0.00 0.00 0.00 2.66
5688 6037 5.779241 TTGGACTATTGATGGGAAGAACT 57.221 39.130 0.00 0.00 0.00 3.01
5689 6038 7.122650 TCAATTTGGACTATTGATGGGAAGAAC 59.877 37.037 0.00 0.00 37.15 3.01
5690 6039 7.181361 TCAATTTGGACTATTGATGGGAAGAA 58.819 34.615 0.00 0.00 37.15 2.52
5691 6040 6.730447 TCAATTTGGACTATTGATGGGAAGA 58.270 36.000 0.00 0.00 37.15 2.87
5692 6041 7.408756 TTCAATTTGGACTATTGATGGGAAG 57.591 36.000 0.00 0.00 40.57 3.46
5693 6042 7.976414 ATTCAATTTGGACTATTGATGGGAA 57.024 32.000 0.00 0.00 40.57 3.97
5694 6043 7.976414 AATTCAATTTGGACTATTGATGGGA 57.024 32.000 0.00 0.00 40.57 4.37
5698 6047 9.822185 GCCTAAAATTCAATTTGGACTATTGAT 57.178 29.630 0.00 0.00 40.57 2.57
5699 6048 8.257306 GGCCTAAAATTCAATTTGGACTATTGA 58.743 33.333 0.00 0.00 39.54 2.57
5700 6049 7.222611 CGGCCTAAAATTCAATTTGGACTATTG 59.777 37.037 0.00 0.00 34.94 1.90
5701 6050 7.093509 ACGGCCTAAAATTCAATTTGGACTATT 60.094 33.333 0.00 0.00 31.77 1.73
5702 6051 6.379988 ACGGCCTAAAATTCAATTTGGACTAT 59.620 34.615 0.00 0.00 31.77 2.12
5703 6052 5.712917 ACGGCCTAAAATTCAATTTGGACTA 59.287 36.000 0.00 0.00 31.77 2.59
5704 6053 4.526650 ACGGCCTAAAATTCAATTTGGACT 59.473 37.500 0.00 0.00 31.77 3.85
5705 6054 4.816392 ACGGCCTAAAATTCAATTTGGAC 58.184 39.130 0.00 0.00 31.77 4.02
5706 6055 5.476091 AACGGCCTAAAATTCAATTTGGA 57.524 34.783 0.00 0.00 31.77 3.53
5707 6056 5.616645 GCAAACGGCCTAAAATTCAATTTGG 60.617 40.000 0.00 0.00 36.11 3.28
5708 6057 5.179182 AGCAAACGGCCTAAAATTCAATTTG 59.821 36.000 0.00 0.00 46.50 2.32
5709 6058 5.304778 AGCAAACGGCCTAAAATTCAATTT 58.695 33.333 0.00 0.00 46.50 1.82
5710 6059 4.893608 AGCAAACGGCCTAAAATTCAATT 58.106 34.783 0.00 0.00 46.50 2.32
5711 6060 4.535526 AGCAAACGGCCTAAAATTCAAT 57.464 36.364 0.00 0.00 46.50 2.57
5712 6061 4.329462 AAGCAAACGGCCTAAAATTCAA 57.671 36.364 0.00 0.00 46.50 2.69
5713 6062 4.329462 AAAGCAAACGGCCTAAAATTCA 57.671 36.364 0.00 0.00 46.50 2.57
5714 6063 5.666969 AAAAAGCAAACGGCCTAAAATTC 57.333 34.783 0.00 0.00 46.50 2.17
5735 6084 4.461781 TGACGGGTTTTTGTTAGGTCAAAA 59.538 37.500 0.00 0.00 42.85 2.44
5736 6085 4.015084 TGACGGGTTTTTGTTAGGTCAAA 58.985 39.130 0.00 0.00 35.83 2.69
5737 6086 3.618351 TGACGGGTTTTTGTTAGGTCAA 58.382 40.909 0.00 0.00 30.77 3.18
5738 6087 3.118334 TCTGACGGGTTTTTGTTAGGTCA 60.118 43.478 0.00 0.00 0.00 4.02
5739 6088 3.469739 TCTGACGGGTTTTTGTTAGGTC 58.530 45.455 0.00 0.00 0.00 3.85
5740 6089 3.564053 TCTGACGGGTTTTTGTTAGGT 57.436 42.857 0.00 0.00 0.00 3.08
5741 6090 5.219633 CAAATCTGACGGGTTTTTGTTAGG 58.780 41.667 0.00 0.00 0.00 2.69
5742 6091 5.219633 CCAAATCTGACGGGTTTTTGTTAG 58.780 41.667 0.00 0.00 0.00 2.34
5743 6092 4.500035 GCCAAATCTGACGGGTTTTTGTTA 60.500 41.667 0.00 0.00 0.00 2.41
5744 6093 3.739830 GCCAAATCTGACGGGTTTTTGTT 60.740 43.478 0.00 0.00 0.00 2.83
5745 6094 2.223947 GCCAAATCTGACGGGTTTTTGT 60.224 45.455 0.00 0.00 0.00 2.83
5746 6095 2.403259 GCCAAATCTGACGGGTTTTTG 58.597 47.619 0.00 0.00 0.00 2.44
5747 6096 1.000717 CGCCAAATCTGACGGGTTTTT 60.001 47.619 0.00 0.00 0.00 1.94
5748 6097 0.596082 CGCCAAATCTGACGGGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
5749 6098 1.862602 GCGCCAAATCTGACGGGTTT 61.863 55.000 0.00 0.00 0.00 3.27
5750 6099 2.332654 GCGCCAAATCTGACGGGTT 61.333 57.895 0.00 0.00 0.00 4.11
5751 6100 2.746277 GCGCCAAATCTGACGGGT 60.746 61.111 0.00 0.00 0.00 5.28
5752 6101 3.508840 GGCGCCAAATCTGACGGG 61.509 66.667 24.80 0.00 0.00 5.28
5753 6102 3.508840 GGGCGCCAAATCTGACGG 61.509 66.667 30.85 0.00 0.00 4.79
5754 6103 3.508840 GGGGCGCCAAATCTGACG 61.509 66.667 30.85 0.00 0.00 4.35
5755 6104 2.361104 TGGGGCGCCAAATCTGAC 60.361 61.111 30.85 7.76 0.00 3.51
5756 6105 2.361104 GTGGGGCGCCAAATCTGA 60.361 61.111 30.85 0.00 0.00 3.27
5757 6106 3.451894 GGTGGGGCGCCAAATCTG 61.452 66.667 30.85 0.00 33.65 2.90
5760 6109 4.986708 AACGGTGGGGCGCCAAAT 62.987 61.111 30.85 10.04 32.88 2.32
5766 6115 3.047877 GACAGAAACGGTGGGGCG 61.048 66.667 0.00 0.00 0.00 6.13
5767 6116 2.671963 GGACAGAAACGGTGGGGC 60.672 66.667 0.00 0.00 0.00 5.80
5768 6117 2.358247 CGGACAGAAACGGTGGGG 60.358 66.667 0.00 0.00 0.00 4.96
5769 6118 1.666872 GACGGACAGAAACGGTGGG 60.667 63.158 0.00 0.00 0.00 4.61
5770 6119 0.944311 CAGACGGACAGAAACGGTGG 60.944 60.000 0.00 0.00 0.00 4.61
5771 6120 0.031585 TCAGACGGACAGAAACGGTG 59.968 55.000 0.00 0.00 0.00 4.94
5772 6121 0.966920 ATCAGACGGACAGAAACGGT 59.033 50.000 0.00 0.00 0.00 4.83
5773 6122 2.080286 AATCAGACGGACAGAAACGG 57.920 50.000 0.00 0.00 0.00 4.44
5774 6123 4.468095 AAAAATCAGACGGACAGAAACG 57.532 40.909 0.00 0.00 0.00 3.60
5885 6234 2.352561 TTGACATTAGGGGAGGACCA 57.647 50.000 0.00 0.00 42.91 4.02
5888 6237 2.274542 TGCTTTGACATTAGGGGAGGA 58.725 47.619 0.00 0.00 0.00 3.71
5891 6240 4.524802 ATCATGCTTTGACATTAGGGGA 57.475 40.909 0.00 0.00 37.11 4.81
5900 6249 5.801947 ACAATTTAGCGAATCATGCTTTGAC 59.198 36.000 0.54 0.00 43.71 3.18
5911 6260 2.945668 GGAGGCTCACAATTTAGCGAAT 59.054 45.455 17.69 0.00 39.71 3.34
5966 6315 8.808092 AGAGCATTCTAGTAGTTTTACTTCTGT 58.192 33.333 0.00 0.00 40.55 3.41
5989 6338 7.095607 GGAGCCATCGTACACAAAATTATAGAG 60.096 40.741 0.00 0.00 0.00 2.43
5995 6344 3.417101 TGGAGCCATCGTACACAAAATT 58.583 40.909 0.00 0.00 0.00 1.82
6000 6349 2.361119 GAGTATGGAGCCATCGTACACA 59.639 50.000 5.06 0.00 37.82 3.72
6001 6350 2.288273 GGAGTATGGAGCCATCGTACAC 60.288 54.545 5.06 0.00 37.82 2.90
6048 6397 0.252421 AGACTGCAGGGAGGTCATCA 60.252 55.000 19.93 0.00 32.98 3.07
6059 6408 0.457509 CACGTAGCCTCAGACTGCAG 60.458 60.000 13.48 13.48 0.00 4.41
6064 6413 0.103208 CCATCCACGTAGCCTCAGAC 59.897 60.000 0.00 0.00 0.00 3.51
6085 6434 3.632604 TGTCGGAGGATCTACATCTTCAC 59.367 47.826 0.00 0.00 36.95 3.18
6190 6540 2.439156 GATGCTGAGGGCGCCTTT 60.439 61.111 28.56 15.62 45.43 3.11
6199 6549 1.066286 GCTATAGCCAGGGATGCTGAG 60.066 57.143 14.13 0.00 39.91 3.35
6229 6579 2.671963 GAAAGACGTGGGGTGGGC 60.672 66.667 0.00 0.00 0.00 5.36
6250 6600 2.009051 CTCAACGTGGATGCAGCATTA 58.991 47.619 9.90 0.00 0.00 1.90
6252 6602 0.321919 ACTCAACGTGGATGCAGCAT 60.322 50.000 7.91 7.91 0.00 3.79
6285 6635 2.852075 AGTGGTTGAAGCCCCCGA 60.852 61.111 0.00 0.00 0.00 5.14
6316 6666 0.378962 CGAGGTCTAGCGAGAAGGTG 59.621 60.000 0.00 0.00 31.96 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.