Multiple sequence alignment - TraesCS5B01G330400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G330400 chr5B 100.000 4658 0 0 1776 6433 514849797 514854454 0.000000e+00 8602.0
1 TraesCS5B01G330400 chr5B 100.000 1372 0 0 1 1372 514848022 514849393 0.000000e+00 2534.0
2 TraesCS5B01G330400 chr5B 83.428 881 75 22 5583 6433 514928657 514929496 0.000000e+00 752.0
3 TraesCS5B01G330400 chr5B 97.209 430 11 1 1 429 56911973 56912402 0.000000e+00 726.0
4 TraesCS5B01G330400 chr5D 90.175 1832 78 34 3817 5582 425650042 425651837 0.000000e+00 2292.0
5 TraesCS5B01G330400 chr5D 90.841 1201 71 31 2638 3810 425648806 425649995 0.000000e+00 1572.0
6 TraesCS5B01G330400 chr5D 94.558 882 21 9 1778 2655 425647932 425648790 0.000000e+00 1338.0
7 TraesCS5B01G330400 chr5D 93.236 887 24 15 499 1372 425647065 425647928 0.000000e+00 1273.0
8 TraesCS5B01G330400 chr5D 88.766 632 54 9 5583 6210 425652403 425653021 0.000000e+00 758.0
9 TraesCS5B01G330400 chr5D 84.351 639 60 18 5583 6219 425717305 425717905 2.000000e-164 590.0
10 TraesCS5B01G330400 chr5D 92.093 215 16 1 6219 6433 425653071 425653284 1.050000e-77 302.0
11 TraesCS5B01G330400 chr5D 92.093 215 13 2 6219 6433 425718038 425718248 3.770000e-77 300.0
12 TraesCS5B01G330400 chr5D 89.655 58 1 1 429 481 425646963 425647020 1.160000e-07 69.4
13 TraesCS5B01G330400 chr5A 89.840 1811 109 33 3817 5582 539943866 539945646 0.000000e+00 2255.0
14 TraesCS5B01G330400 chr5A 86.292 890 71 14 5583 6433 539946248 539947125 0.000000e+00 920.0
15 TraesCS5B01G330400 chr5A 85.589 569 41 8 5894 6433 539957133 539957689 5.630000e-155 558.0
16 TraesCS5B01G330400 chr5A 83.691 233 33 3 5583 5810 539956867 539957099 1.400000e-51 215.0
17 TraesCS5B01G330400 chr5A 89.431 123 9 4 3699 3819 539943714 539943834 1.120000e-32 152.0
18 TraesCS5B01G330400 chr2D 91.555 971 56 17 2658 3618 302987214 302988168 0.000000e+00 1315.0
19 TraesCS5B01G330400 chr3A 90.909 660 35 18 2968 3618 740073311 740073954 0.000000e+00 863.0
20 TraesCS5B01G330400 chr3A 96.503 429 15 0 1 429 199418709 199419137 0.000000e+00 710.0
21 TraesCS5B01G330400 chr7B 90.592 659 41 14 2968 3618 173306422 173307067 0.000000e+00 854.0
22 TraesCS5B01G330400 chr7B 95.900 439 18 0 1 439 504195922 504195484 0.000000e+00 712.0
23 TraesCS5B01G330400 chr1A 90.520 654 37 18 2968 3612 99536695 99537332 0.000000e+00 841.0
24 TraesCS5B01G330400 chr1A 96.528 432 15 0 1 432 63756096 63755665 0.000000e+00 715.0
25 TraesCS5B01G330400 chr6A 90.000 660 40 16 2968 3618 132059233 132059875 0.000000e+00 830.0
26 TraesCS5B01G330400 chr7A 90.723 636 38 14 2988 3618 480549390 480548771 0.000000e+00 828.0
27 TraesCS5B01G330400 chr3B 89.666 658 48 13 2968 3618 173619883 173619239 0.000000e+00 821.0
28 TraesCS5B01G330400 chr3B 96.512 430 15 0 1 430 731133451 731133880 0.000000e+00 712.0
29 TraesCS5B01G330400 chr2B 88.152 633 53 12 2988 3618 346295143 346294531 0.000000e+00 734.0
30 TraesCS5B01G330400 chr2B 96.991 432 13 0 1 432 652842958 652842527 0.000000e+00 726.0
31 TraesCS5B01G330400 chr4A 96.977 430 13 0 1 430 645405512 645405083 0.000000e+00 723.0
32 TraesCS5B01G330400 chr4A 96.503 429 15 0 1 429 683245167 683244739 0.000000e+00 710.0
33 TraesCS5B01G330400 chr1B 96.322 435 15 1 1 435 167923153 167922720 0.000000e+00 713.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G330400 chr5B 514848022 514854454 6432 False 5568.000000 8602 100.000 1 6433 2 chr5B.!!$F3 6432
1 TraesCS5B01G330400 chr5B 514928657 514929496 839 False 752.000000 752 83.428 5583 6433 1 chr5B.!!$F2 850
2 TraesCS5B01G330400 chr5D 425646963 425653284 6321 False 1086.342857 2292 91.332 429 6433 7 chr5D.!!$F1 6004
3 TraesCS5B01G330400 chr5D 425717305 425718248 943 False 445.000000 590 88.222 5583 6433 2 chr5D.!!$F2 850
4 TraesCS5B01G330400 chr5A 539943714 539947125 3411 False 1109.000000 2255 88.521 3699 6433 3 chr5A.!!$F1 2734
5 TraesCS5B01G330400 chr5A 539956867 539957689 822 False 386.500000 558 84.640 5583 6433 2 chr5A.!!$F2 850
6 TraesCS5B01G330400 chr2D 302987214 302988168 954 False 1315.000000 1315 91.555 2658 3618 1 chr2D.!!$F1 960
7 TraesCS5B01G330400 chr3A 740073311 740073954 643 False 863.000000 863 90.909 2968 3618 1 chr3A.!!$F2 650
8 TraesCS5B01G330400 chr7B 173306422 173307067 645 False 854.000000 854 90.592 2968 3618 1 chr7B.!!$F1 650
9 TraesCS5B01G330400 chr1A 99536695 99537332 637 False 841.000000 841 90.520 2968 3612 1 chr1A.!!$F1 644
10 TraesCS5B01G330400 chr6A 132059233 132059875 642 False 830.000000 830 90.000 2968 3618 1 chr6A.!!$F1 650
11 TraesCS5B01G330400 chr7A 480548771 480549390 619 True 828.000000 828 90.723 2988 3618 1 chr7A.!!$R1 630
12 TraesCS5B01G330400 chr3B 173619239 173619883 644 True 821.000000 821 89.666 2968 3618 1 chr3B.!!$R1 650
13 TraesCS5B01G330400 chr2B 346294531 346295143 612 True 734.000000 734 88.152 2988 3618 1 chr2B.!!$R1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.031585 GCCCAACCGGTCAACTTTTC 59.968 55.000 8.04 0.0 0.00 2.29 F
731 764 0.036577 CAAGCTCACACCTCCCTCTG 60.037 60.000 0.00 0.0 0.00 3.35 F
736 769 0.613292 TCACACCTCCCTCTGCTCTC 60.613 60.000 0.00 0.0 0.00 3.20 F
737 770 0.614415 CACACCTCCCTCTGCTCTCT 60.614 60.000 0.00 0.0 0.00 3.10 F
738 771 0.614415 ACACCTCCCTCTGCTCTCTG 60.614 60.000 0.00 0.0 0.00 3.35 F
2642 2692 1.070601 TGTGCAGTAGAGCTTTGAGCA 59.929 47.619 2.47 0.0 45.56 4.26 F
3349 3440 0.035725 TCGAGCAGAACTACGAGGGA 60.036 55.000 0.00 0.0 0.00 4.20 F
4313 4541 0.250513 CACTTCTCAGGCCCCTGTAC 59.749 60.000 13.66 0.0 43.96 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 2036 0.038166 GTGGATGTGGTGGTGGTGAT 59.962 55.000 0.00 0.0 0.00 3.06 R
2430 2479 0.904865 ATGCCTTCGTCTCCTGTCCA 60.905 55.000 0.00 0.0 0.00 4.02 R
2685 2767 1.003118 GCCACTCATTCACCCACTGTA 59.997 52.381 0.00 0.0 0.00 2.74 R
2732 2814 8.693542 ATGATAGTAAAAATCAGCAAAAGCAC 57.306 30.769 0.00 0.0 36.82 4.40 R
2806 2891 2.197324 GAACCAACTGCCACCCCA 59.803 61.111 0.00 0.0 0.00 4.96 R
3689 3781 0.104855 CAGCCAAGCTAGCCATACGA 59.895 55.000 12.13 0.0 36.40 3.43 R
4694 4940 0.253044 CCATGTGGGTCTGTACCTGG 59.747 60.000 0.00 0.0 45.95 4.45 R
5440 5686 1.376424 AGTGACCAGAGGCAATGCG 60.376 57.895 0.00 0.0 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.082523 CCGCGGTGGAGGTGACAT 62.083 66.667 19.50 0.00 42.00 3.06
42 43 2.509336 CGCGGTGGAGGTGACATC 60.509 66.667 0.00 0.00 0.00 3.06
43 44 2.509336 GCGGTGGAGGTGACATCG 60.509 66.667 0.00 0.00 44.77 3.84
44 45 2.509336 CGGTGGAGGTGACATCGC 60.509 66.667 0.00 0.00 35.52 4.58
45 46 2.125106 GGTGGAGGTGACATCGCC 60.125 66.667 0.75 0.75 46.57 5.54
51 52 4.932789 GGTGACATCGCCTAAGCA 57.067 55.556 4.14 0.00 43.02 3.91
52 53 2.682893 GGTGACATCGCCTAAGCAG 58.317 57.895 4.14 0.00 43.02 4.24
53 54 0.108138 GGTGACATCGCCTAAGCAGT 60.108 55.000 4.14 0.00 43.02 4.40
54 55 1.676014 GGTGACATCGCCTAAGCAGTT 60.676 52.381 4.14 0.00 43.02 3.16
55 56 1.661112 GTGACATCGCCTAAGCAGTTC 59.339 52.381 0.00 0.00 39.83 3.01
56 57 0.924090 GACATCGCCTAAGCAGTTCG 59.076 55.000 0.00 0.00 39.83 3.95
57 58 0.530744 ACATCGCCTAAGCAGTTCGA 59.469 50.000 0.00 0.00 39.83 3.71
58 59 1.137086 ACATCGCCTAAGCAGTTCGAT 59.863 47.619 0.00 0.00 39.83 3.59
59 60 1.789464 CATCGCCTAAGCAGTTCGATC 59.211 52.381 0.00 0.00 39.83 3.69
60 61 0.102481 TCGCCTAAGCAGTTCGATCC 59.898 55.000 0.00 0.00 39.83 3.36
61 62 0.179111 CGCCTAAGCAGTTCGATCCA 60.179 55.000 0.00 0.00 39.83 3.41
62 63 1.291132 GCCTAAGCAGTTCGATCCAC 58.709 55.000 0.00 0.00 39.53 4.02
63 64 1.560923 CCTAAGCAGTTCGATCCACG 58.439 55.000 0.00 0.00 44.09 4.94
64 65 4.659708 GCCTAAGCAGTTCGATCCACGA 62.660 54.545 0.00 0.00 43.76 4.35
71 72 4.623814 TCGATCCACGACTACGGT 57.376 55.556 0.00 0.00 46.45 4.83
72 73 2.092374 TCGATCCACGACTACGGTG 58.908 57.895 0.00 0.00 46.45 4.94
73 74 1.063649 CGATCCACGACTACGGTGG 59.936 63.158 4.61 4.61 45.77 4.61
74 75 1.226888 GATCCACGACTACGGTGGC 60.227 63.158 6.10 0.00 44.46 5.01
75 76 2.931713 GATCCACGACTACGGTGGCG 62.932 65.000 6.10 3.64 44.46 5.69
76 77 4.047059 CCACGACTACGGTGGCGT 62.047 66.667 4.99 4.99 44.46 5.68
77 78 2.803670 CACGACTACGGTGGCGTG 60.804 66.667 20.39 20.39 46.25 5.34
78 79 4.047059 ACGACTACGGTGGCGTGG 62.047 66.667 9.92 0.00 44.46 4.94
79 80 4.047059 CGACTACGGTGGCGTGGT 62.047 66.667 0.00 0.00 36.32 4.16
80 81 2.431942 GACTACGGTGGCGTGGTG 60.432 66.667 0.00 0.00 33.85 4.17
81 82 3.216944 GACTACGGTGGCGTGGTGT 62.217 63.158 0.00 0.00 33.85 4.16
82 83 2.736995 CTACGGTGGCGTGGTGTG 60.737 66.667 0.00 0.00 0.00 3.82
83 84 4.302509 TACGGTGGCGTGGTGTGG 62.303 66.667 0.00 0.00 0.00 4.17
130 131 4.214327 GCCGGCGAGGAGGAGAAG 62.214 72.222 12.58 0.00 45.00 2.85
131 132 3.532155 CCGGCGAGGAGGAGAAGG 61.532 72.222 9.30 0.00 45.00 3.46
132 133 2.440430 CGGCGAGGAGGAGAAGGA 60.440 66.667 0.00 0.00 0.00 3.36
133 134 2.052690 CGGCGAGGAGGAGAAGGAA 61.053 63.158 0.00 0.00 0.00 3.36
134 135 1.819905 GGCGAGGAGGAGAAGGAAG 59.180 63.158 0.00 0.00 0.00 3.46
135 136 0.684805 GGCGAGGAGGAGAAGGAAGA 60.685 60.000 0.00 0.00 0.00 2.87
136 137 0.744281 GCGAGGAGGAGAAGGAAGAG 59.256 60.000 0.00 0.00 0.00 2.85
137 138 1.398692 CGAGGAGGAGAAGGAAGAGG 58.601 60.000 0.00 0.00 0.00 3.69
138 139 1.788229 GAGGAGGAGAAGGAAGAGGG 58.212 60.000 0.00 0.00 0.00 4.30
139 140 0.326143 AGGAGGAGAAGGAAGAGGGC 60.326 60.000 0.00 0.00 0.00 5.19
140 141 0.618968 GGAGGAGAAGGAAGAGGGCA 60.619 60.000 0.00 0.00 0.00 5.36
141 142 0.829990 GAGGAGAAGGAAGAGGGCAG 59.170 60.000 0.00 0.00 0.00 4.85
142 143 0.415429 AGGAGAAGGAAGAGGGCAGA 59.585 55.000 0.00 0.00 0.00 4.26
143 144 0.829990 GGAGAAGGAAGAGGGCAGAG 59.170 60.000 0.00 0.00 0.00 3.35
144 145 0.177836 GAGAAGGAAGAGGGCAGAGC 59.822 60.000 0.00 0.00 0.00 4.09
145 146 1.153469 GAAGGAAGAGGGCAGAGCG 60.153 63.158 0.00 0.00 0.00 5.03
146 147 2.585791 GAAGGAAGAGGGCAGAGCGG 62.586 65.000 0.00 0.00 0.00 5.52
147 148 4.168291 GGAAGAGGGCAGAGCGGG 62.168 72.222 0.00 0.00 0.00 6.13
148 149 4.168291 GAAGAGGGCAGAGCGGGG 62.168 72.222 0.00 0.00 0.00 5.73
165 166 4.736896 GTCGGGGTGTGGCTCGAC 62.737 72.222 0.00 0.00 43.62 4.20
195 196 3.497031 GCCCTAAACGGTGCGAGC 61.497 66.667 0.00 0.00 0.00 5.03
196 197 2.818274 CCCTAAACGGTGCGAGCC 60.818 66.667 0.00 0.00 0.00 4.70
209 210 4.247380 GAGCCGGCCTCATCCCAG 62.247 72.222 26.15 0.00 40.45 4.45
211 212 4.554036 GCCGGCCTCATCCCAGTC 62.554 72.222 18.11 0.00 0.00 3.51
212 213 3.083349 CCGGCCTCATCCCAGTCA 61.083 66.667 0.00 0.00 0.00 3.41
213 214 2.503061 CGGCCTCATCCCAGTCAG 59.497 66.667 0.00 0.00 0.00 3.51
214 215 2.191641 GGCCTCATCCCAGTCAGC 59.808 66.667 0.00 0.00 0.00 4.26
215 216 2.202987 GCCTCATCCCAGTCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
216 217 2.202987 CCTCATCCCAGTCAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
217 218 2.729479 CCTCATCCCAGTCAGCGCT 61.729 63.158 2.64 2.64 0.00 5.92
218 219 1.227205 CTCATCCCAGTCAGCGCTC 60.227 63.158 7.13 0.00 0.00 5.03
219 220 1.953231 CTCATCCCAGTCAGCGCTCA 61.953 60.000 7.13 0.00 0.00 4.26
220 221 1.521010 CATCCCAGTCAGCGCTCAG 60.521 63.158 7.13 0.00 0.00 3.35
221 222 1.986757 ATCCCAGTCAGCGCTCAGT 60.987 57.895 7.13 0.00 0.00 3.41
222 223 1.954362 ATCCCAGTCAGCGCTCAGTC 61.954 60.000 7.13 0.00 0.00 3.51
223 224 2.653115 CCAGTCAGCGCTCAGTCA 59.347 61.111 7.13 0.00 0.00 3.41
224 225 1.445754 CCAGTCAGCGCTCAGTCAG 60.446 63.158 7.13 0.00 0.00 3.51
225 226 2.093473 CAGTCAGCGCTCAGTCAGC 61.093 63.158 7.13 0.00 45.85 4.26
285 286 4.280019 GGGCCCAACCGGTCAACT 62.280 66.667 19.95 0.00 38.37 3.16
286 287 2.203437 GGCCCAACCGGTCAACTT 60.203 61.111 8.04 0.00 35.67 2.66
287 288 1.830847 GGCCCAACCGGTCAACTTT 60.831 57.895 8.04 0.00 35.67 2.66
288 289 1.396607 GGCCCAACCGGTCAACTTTT 61.397 55.000 8.04 0.00 35.67 2.27
289 290 0.031585 GCCCAACCGGTCAACTTTTC 59.968 55.000 8.04 0.00 0.00 2.29
290 291 1.687563 CCCAACCGGTCAACTTTTCT 58.312 50.000 8.04 0.00 0.00 2.52
291 292 1.336755 CCCAACCGGTCAACTTTTCTG 59.663 52.381 8.04 0.00 0.00 3.02
292 293 2.021457 CCAACCGGTCAACTTTTCTGT 58.979 47.619 8.04 0.00 0.00 3.41
293 294 2.032924 CCAACCGGTCAACTTTTCTGTC 59.967 50.000 8.04 0.00 0.00 3.51
294 295 2.680841 CAACCGGTCAACTTTTCTGTCA 59.319 45.455 8.04 0.00 0.00 3.58
295 296 2.993937 ACCGGTCAACTTTTCTGTCAA 58.006 42.857 0.00 0.00 0.00 3.18
296 297 3.551846 ACCGGTCAACTTTTCTGTCAAT 58.448 40.909 0.00 0.00 0.00 2.57
297 298 4.710324 ACCGGTCAACTTTTCTGTCAATA 58.290 39.130 0.00 0.00 0.00 1.90
298 299 4.514066 ACCGGTCAACTTTTCTGTCAATAC 59.486 41.667 0.00 0.00 0.00 1.89
299 300 4.377022 CCGGTCAACTTTTCTGTCAATACG 60.377 45.833 0.00 0.00 0.00 3.06
300 301 4.210537 CGGTCAACTTTTCTGTCAATACGT 59.789 41.667 0.00 0.00 0.00 3.57
301 302 5.403166 CGGTCAACTTTTCTGTCAATACGTA 59.597 40.000 0.00 0.00 0.00 3.57
302 303 6.090358 CGGTCAACTTTTCTGTCAATACGTAT 59.910 38.462 1.14 1.14 0.00 3.06
303 304 7.274033 CGGTCAACTTTTCTGTCAATACGTATA 59.726 37.037 8.83 0.00 0.00 1.47
304 305 8.928733 GGTCAACTTTTCTGTCAATACGTATAA 58.071 33.333 8.83 0.00 0.00 0.98
311 312 9.866936 TTTTCTGTCAATACGTATAAAACACAC 57.133 29.630 8.83 0.00 0.00 3.82
312 313 8.821147 TTCTGTCAATACGTATAAAACACACT 57.179 30.769 8.83 0.00 0.00 3.55
313 314 8.821147 TCTGTCAATACGTATAAAACACACTT 57.179 30.769 8.83 0.00 0.00 3.16
314 315 9.263538 TCTGTCAATACGTATAAAACACACTTT 57.736 29.630 8.83 0.00 0.00 2.66
315 316 9.872757 CTGTCAATACGTATAAAACACACTTTT 57.127 29.630 8.83 0.00 0.00 2.27
338 339 2.026879 TTTTTGCAACGGCTCGCC 59.973 55.556 0.00 0.00 41.91 5.54
339 340 3.492311 TTTTTGCAACGGCTCGCCC 62.492 57.895 0.00 0.00 41.91 6.13
344 345 3.508840 CAACGGCTCGCCCCAATC 61.509 66.667 1.72 0.00 0.00 2.67
345 346 3.717294 AACGGCTCGCCCCAATCT 61.717 61.111 1.72 0.00 0.00 2.40
346 347 3.268103 AACGGCTCGCCCCAATCTT 62.268 57.895 1.72 0.00 0.00 2.40
347 348 3.204827 CGGCTCGCCCCAATCTTG 61.205 66.667 1.72 0.00 0.00 3.02
365 366 9.874205 CCAATCTTGGTATTGACATGTAAAAAT 57.126 29.630 0.00 2.22 43.43 1.82
388 389 6.942532 TTACCAATCTTGATACCAATCTGC 57.057 37.500 0.00 0.00 32.93 4.26
389 390 5.121380 ACCAATCTTGATACCAATCTGCT 57.879 39.130 0.00 0.00 32.93 4.24
390 391 5.513233 ACCAATCTTGATACCAATCTGCTT 58.487 37.500 0.00 0.00 32.93 3.91
391 392 5.591877 ACCAATCTTGATACCAATCTGCTTC 59.408 40.000 0.00 0.00 32.93 3.86
392 393 5.009410 CCAATCTTGATACCAATCTGCTTCC 59.991 44.000 0.00 0.00 32.93 3.46
393 394 4.842531 TCTTGATACCAATCTGCTTCCA 57.157 40.909 0.00 0.00 32.93 3.53
394 395 5.178096 TCTTGATACCAATCTGCTTCCAA 57.822 39.130 0.00 0.00 32.93 3.53
395 396 5.759059 TCTTGATACCAATCTGCTTCCAAT 58.241 37.500 0.00 0.00 32.93 3.16
396 397 5.591472 TCTTGATACCAATCTGCTTCCAATG 59.409 40.000 0.00 0.00 32.93 2.82
397 398 3.633525 TGATACCAATCTGCTTCCAATGC 59.366 43.478 0.00 0.00 32.93 3.56
398 399 1.188863 ACCAATCTGCTTCCAATGCC 58.811 50.000 0.00 0.00 0.00 4.40
399 400 0.462789 CCAATCTGCTTCCAATGCCC 59.537 55.000 0.00 0.00 0.00 5.36
400 401 0.462789 CAATCTGCTTCCAATGCCCC 59.537 55.000 0.00 0.00 0.00 5.80
401 402 0.041535 AATCTGCTTCCAATGCCCCA 59.958 50.000 0.00 0.00 0.00 4.96
402 403 0.041535 ATCTGCTTCCAATGCCCCAA 59.958 50.000 0.00 0.00 0.00 4.12
403 404 0.041535 TCTGCTTCCAATGCCCCAAT 59.958 50.000 0.00 0.00 0.00 3.16
404 405 0.906775 CTGCTTCCAATGCCCCAATT 59.093 50.000 0.00 0.00 0.00 2.32
405 406 0.614294 TGCTTCCAATGCCCCAATTG 59.386 50.000 0.00 0.00 37.30 2.32
406 407 0.614812 GCTTCCAATGCCCCAATTGT 59.385 50.000 4.43 0.00 36.06 2.71
407 408 1.676615 GCTTCCAATGCCCCAATTGTG 60.677 52.381 4.43 0.00 36.06 3.33
408 409 0.982704 TTCCAATGCCCCAATTGTGG 59.017 50.000 2.04 2.04 45.53 4.17
409 410 0.178909 TCCAATGCCCCAATTGTGGT 60.179 50.000 8.84 0.00 44.30 4.16
410 411 1.077828 TCCAATGCCCCAATTGTGGTA 59.922 47.619 8.84 4.38 44.30 3.25
411 412 1.206849 CCAATGCCCCAATTGTGGTAC 59.793 52.381 8.84 3.30 44.30 3.34
412 413 2.178580 CAATGCCCCAATTGTGGTACT 58.821 47.619 8.84 0.00 44.30 2.73
413 414 2.566724 CAATGCCCCAATTGTGGTACTT 59.433 45.455 8.84 0.00 44.30 2.24
414 415 3.748645 ATGCCCCAATTGTGGTACTTA 57.251 42.857 8.84 0.00 44.30 2.24
415 416 3.748645 TGCCCCAATTGTGGTACTTAT 57.251 42.857 8.84 0.00 44.30 1.73
416 417 3.360867 TGCCCCAATTGTGGTACTTATG 58.639 45.455 8.84 0.00 44.30 1.90
417 418 3.245443 TGCCCCAATTGTGGTACTTATGT 60.245 43.478 8.84 0.00 44.30 2.29
418 419 3.130340 GCCCCAATTGTGGTACTTATGTG 59.870 47.826 8.84 0.00 44.30 3.21
419 420 3.130340 CCCCAATTGTGGTACTTATGTGC 59.870 47.826 4.43 0.00 44.30 4.57
420 421 3.761218 CCCAATTGTGGTACTTATGTGCA 59.239 43.478 4.43 0.00 44.30 4.57
421 422 4.219507 CCCAATTGTGGTACTTATGTGCAA 59.780 41.667 4.43 0.00 44.30 4.08
422 423 5.105392 CCCAATTGTGGTACTTATGTGCAAT 60.105 40.000 4.43 0.00 44.30 3.56
423 424 6.397272 CCAATTGTGGTACTTATGTGCAATT 58.603 36.000 4.43 0.00 40.42 2.32
424 425 6.873076 CCAATTGTGGTACTTATGTGCAATTT 59.127 34.615 4.43 0.00 40.42 1.82
425 426 8.031864 CCAATTGTGGTACTTATGTGCAATTTA 58.968 33.333 4.43 0.00 40.42 1.40
426 427 8.859156 CAATTGTGGTACTTATGTGCAATTTAC 58.141 33.333 0.00 0.00 34.23 2.01
427 428 7.753309 TTGTGGTACTTATGTGCAATTTACT 57.247 32.000 0.00 0.00 0.00 2.24
432 433 6.260271 GGTACTTATGTGCAATTTACTCCTCC 59.740 42.308 0.00 0.00 0.00 4.30
481 487 1.599797 CCACCCGAAGAAAACGCCT 60.600 57.895 0.00 0.00 0.00 5.52
482 488 1.574702 CCACCCGAAGAAAACGCCTC 61.575 60.000 0.00 0.00 0.00 4.70
519 552 3.959975 CAACCCAACACGCACCGG 61.960 66.667 0.00 0.00 0.00 5.28
604 637 3.066814 GGTACGTCTCCCCGTGCT 61.067 66.667 0.00 0.00 42.13 4.40
605 638 2.181021 GTACGTCTCCCCGTGCTG 59.819 66.667 0.00 0.00 41.92 4.41
606 639 3.755628 TACGTCTCCCCGTGCTGC 61.756 66.667 0.00 0.00 41.92 5.25
728 761 2.227036 CCCAAGCTCACACCTCCCT 61.227 63.158 0.00 0.00 0.00 4.20
731 764 0.036577 CAAGCTCACACCTCCCTCTG 60.037 60.000 0.00 0.00 0.00 3.35
733 766 2.289532 GCTCACACCTCCCTCTGCT 61.290 63.158 0.00 0.00 0.00 4.24
734 767 1.896694 CTCACACCTCCCTCTGCTC 59.103 63.158 0.00 0.00 0.00 4.26
735 768 0.614415 CTCACACCTCCCTCTGCTCT 60.614 60.000 0.00 0.00 0.00 4.09
736 769 0.613292 TCACACCTCCCTCTGCTCTC 60.613 60.000 0.00 0.00 0.00 3.20
737 770 0.614415 CACACCTCCCTCTGCTCTCT 60.614 60.000 0.00 0.00 0.00 3.10
738 771 0.614415 ACACCTCCCTCTGCTCTCTG 60.614 60.000 0.00 0.00 0.00 3.35
740 773 1.381599 CCTCCCTCTGCTCTCTGCT 60.382 63.158 0.00 0.00 43.37 4.24
741 774 1.678598 CCTCCCTCTGCTCTCTGCTG 61.679 65.000 0.00 0.00 43.37 4.41
823 856 1.261238 CCCTCACTCCACTCCCACTC 61.261 65.000 0.00 0.00 0.00 3.51
830 863 3.721706 CACTCCCACTCCCCAGCC 61.722 72.222 0.00 0.00 0.00 4.85
917 951 1.284715 GCAACAACGGTTACTGCCC 59.715 57.895 12.85 0.00 34.87 5.36
918 952 1.953772 CAACAACGGTTACTGCCCC 59.046 57.895 0.00 0.00 34.87 5.80
923 957 2.660802 CGGTTACTGCCCCGTCTT 59.339 61.111 0.00 0.00 39.38 3.01
924 958 1.447314 CGGTTACTGCCCCGTCTTC 60.447 63.158 0.00 0.00 39.38 2.87
927 968 2.652095 TTACTGCCCCGTCTTCCCG 61.652 63.158 0.00 0.00 0.00 5.14
982 1023 3.200887 GAGCGGCTGATCGATCGGT 62.201 63.158 29.95 19.87 35.88 4.69
984 1025 2.049985 CGGCTGATCGATCGGTCC 60.050 66.667 28.46 26.84 34.33 4.46
985 1026 2.845550 CGGCTGATCGATCGGTCCA 61.846 63.158 30.27 13.98 34.33 4.02
986 1027 1.668294 GGCTGATCGATCGGTCCAT 59.332 57.895 29.95 6.31 35.60 3.41
1131 1177 4.273257 GCGCTCTACCTCCGCTCC 62.273 72.222 0.00 0.00 43.95 4.70
1353 1399 3.002583 TCCTCCACCATCAGCGCA 61.003 61.111 11.47 0.00 0.00 6.09
2085 2131 1.977009 GGCCGGGAAAAAGGACCTG 60.977 63.158 2.18 0.00 0.00 4.00
2130 2176 1.192146 AGTACTTCCTCAAGGCCGCA 61.192 55.000 0.00 0.00 33.37 5.69
2237 2283 2.034053 GTCCTCAGATCAGCTTACCTCG 59.966 54.545 0.00 0.00 0.00 4.63
2296 2342 1.195448 CTGACGAAATCTTTGCTGCGT 59.805 47.619 0.00 0.00 34.39 5.24
2297 2343 2.409012 TGACGAAATCTTTGCTGCGTA 58.591 42.857 0.00 0.00 31.58 4.42
2298 2344 2.156891 TGACGAAATCTTTGCTGCGTAC 59.843 45.455 0.00 0.00 31.58 3.67
2299 2345 1.126113 ACGAAATCTTTGCTGCGTACG 59.874 47.619 11.84 11.84 0.00 3.67
2308 2354 2.784596 CTGCGTACGTGCAATGGG 59.215 61.111 17.90 0.00 45.74 4.00
2312 2358 1.087202 GCGTACGTGCAATGGGATCA 61.087 55.000 17.90 0.00 34.15 2.92
2534 2583 3.333804 CTGGGAGAAGAAGCTGTTTCTC 58.666 50.000 22.93 22.93 45.41 2.87
2547 2596 1.149148 GTTTCTCGAGGTCAAGGTGC 58.851 55.000 13.56 0.00 0.00 5.01
2581 2631 2.107378 TCTGTAACCCACTTCATTGGCA 59.893 45.455 0.00 0.00 35.00 4.92
2584 2634 3.257873 TGTAACCCACTTCATTGGCATTG 59.742 43.478 3.01 3.01 35.00 2.82
2585 2635 2.014010 ACCCACTTCATTGGCATTGT 57.986 45.000 9.03 0.00 35.00 2.71
2591 2641 5.511202 CCCACTTCATTGGCATTGTTTTACT 60.511 40.000 9.03 0.00 35.00 2.24
2609 2659 7.500892 TGTTTTACTAGCTTCAGTTTTGGATCA 59.499 33.333 0.00 0.00 0.00 2.92
2610 2660 8.515414 GTTTTACTAGCTTCAGTTTTGGATCAT 58.485 33.333 0.00 0.00 0.00 2.45
2637 2687 4.277515 TCAGAATGTGCAGTAGAGCTTT 57.722 40.909 0.00 0.00 37.40 3.51
2638 2688 3.999001 TCAGAATGTGCAGTAGAGCTTTG 59.001 43.478 0.00 0.00 37.40 2.77
2639 2689 3.999001 CAGAATGTGCAGTAGAGCTTTGA 59.001 43.478 0.00 0.00 34.99 2.69
2640 2690 4.093115 CAGAATGTGCAGTAGAGCTTTGAG 59.907 45.833 0.00 0.00 34.99 3.02
2641 2691 1.800805 TGTGCAGTAGAGCTTTGAGC 58.199 50.000 0.00 0.00 42.84 4.26
2642 2692 1.070601 TGTGCAGTAGAGCTTTGAGCA 59.929 47.619 2.47 0.00 45.56 4.26
2643 2693 1.731160 GTGCAGTAGAGCTTTGAGCAG 59.269 52.381 2.47 0.00 45.56 4.24
2644 2694 1.620323 TGCAGTAGAGCTTTGAGCAGA 59.380 47.619 2.47 0.00 45.56 4.26
2646 2696 3.269178 GCAGTAGAGCTTTGAGCAGATT 58.731 45.455 2.47 0.00 45.56 2.40
2653 2735 5.194432 AGAGCTTTGAGCAGATTGATTCAT 58.806 37.500 2.47 0.00 45.56 2.57
2685 2767 4.835615 ACGGCTTGGTTAGATAGATCTCAT 59.164 41.667 0.00 0.00 38.32 2.90
2806 2891 5.367060 GGGAGATACTAACAAGGATTCCAGT 59.633 44.000 5.29 1.75 0.00 4.00
2816 2901 1.379044 GATTCCAGTGGGGTGGCAG 60.379 63.158 9.92 0.00 37.53 4.85
2830 2915 0.836606 TGGCAGTTGGTTCTGTCTCA 59.163 50.000 0.00 0.00 40.28 3.27
2935 3022 9.429359 GTCAGGAGGTTCTGTAAATATGATATG 57.571 37.037 0.00 0.00 36.25 1.78
2941 3028 6.714810 GGTTCTGTAAATATGATATGGCACCA 59.285 38.462 0.00 0.00 0.00 4.17
3004 3091 5.760743 TGTATGCGTTATTTTATAGCCTGCA 59.239 36.000 0.00 0.00 0.00 4.41
3070 3159 1.293924 CTGGTGTGATCCTTCATCGC 58.706 55.000 0.00 0.00 41.78 4.58
3103 3192 3.322828 ACTTGTTCAGCTCATTTGCCATT 59.677 39.130 0.00 0.00 0.00 3.16
3134 3223 4.811557 ACTAAAGATAGGCTGTTTCATCGC 59.188 41.667 0.00 0.00 33.15 4.58
3300 3391 6.799512 ACTTACCACATACTATTACCGTGAC 58.200 40.000 0.00 0.00 0.00 3.67
3349 3440 0.035725 TCGAGCAGAACTACGAGGGA 60.036 55.000 0.00 0.00 0.00 4.20
3351 3442 1.174783 GAGCAGAACTACGAGGGACA 58.825 55.000 0.00 0.00 0.00 4.02
3581 3672 2.522185 GGTCAGTACCACACTCTACCA 58.478 52.381 0.00 0.00 45.98 3.25
3582 3673 3.097614 GGTCAGTACCACACTCTACCAT 58.902 50.000 0.00 0.00 45.98 3.55
3584 3675 3.762288 GTCAGTACCACACTCTACCATCA 59.238 47.826 0.00 0.00 34.26 3.07
3596 3688 4.097135 ACTCTACCATCACTCACTCATTCG 59.903 45.833 0.00 0.00 0.00 3.34
3612 3704 2.943449 TTCGTGTACCGTATGCATCA 57.057 45.000 0.19 0.00 37.94 3.07
3618 3710 3.800506 GTGTACCGTATGCATCAAGTACC 59.199 47.826 21.18 13.43 31.28 3.34
3619 3711 3.447944 TGTACCGTATGCATCAAGTACCA 59.552 43.478 21.18 12.11 31.28 3.25
3620 3712 2.901249 ACCGTATGCATCAAGTACCAC 58.099 47.619 0.19 0.00 0.00 4.16
3622 3714 2.866156 CCGTATGCATCAAGTACCACTG 59.134 50.000 0.19 0.00 0.00 3.66
3623 3715 3.521560 CGTATGCATCAAGTACCACTGT 58.478 45.455 0.19 0.00 0.00 3.55
3624 3716 4.440940 CCGTATGCATCAAGTACCACTGTA 60.441 45.833 0.19 0.00 0.00 2.74
3625 3717 4.503007 CGTATGCATCAAGTACCACTGTAC 59.497 45.833 0.19 0.00 46.36 2.90
3635 3727 2.688902 ACCACTGTACCAGTACCTCA 57.311 50.000 5.53 0.00 43.43 3.86
3636 3728 2.245582 ACCACTGTACCAGTACCTCAC 58.754 52.381 5.53 0.00 43.43 3.51
3637 3729 2.244695 CCACTGTACCAGTACCTCACA 58.755 52.381 5.53 0.00 43.43 3.58
3638 3730 2.832129 CCACTGTACCAGTACCTCACAT 59.168 50.000 5.53 0.00 43.43 3.21
3639 3731 3.368427 CCACTGTACCAGTACCTCACATG 60.368 52.174 5.53 0.00 43.43 3.21
3640 3732 3.509967 CACTGTACCAGTACCTCACATGA 59.490 47.826 0.00 0.00 43.43 3.07
3660 3752 7.697352 CATGAACATGTCTCTCTACTTCATC 57.303 40.000 0.00 0.00 34.23 2.92
3662 3754 7.473735 TGAACATGTCTCTCTACTTCATCTT 57.526 36.000 0.00 0.00 0.00 2.40
3663 3755 7.318893 TGAACATGTCTCTCTACTTCATCTTG 58.681 38.462 0.00 0.00 0.00 3.02
3664 3756 6.849085 ACATGTCTCTCTACTTCATCTTGT 57.151 37.500 0.00 0.00 0.00 3.16
3665 3757 7.946381 ACATGTCTCTCTACTTCATCTTGTA 57.054 36.000 0.00 0.00 0.00 2.41
3666 3758 7.767261 ACATGTCTCTCTACTTCATCTTGTAC 58.233 38.462 0.00 0.00 0.00 2.90
3667 3759 6.761099 TGTCTCTCTACTTCATCTTGTACC 57.239 41.667 0.00 0.00 0.00 3.34
3668 3760 6.246163 TGTCTCTCTACTTCATCTTGTACCA 58.754 40.000 0.00 0.00 0.00 3.25
3670 3762 7.148000 TGTCTCTCTACTTCATCTTGTACCATG 60.148 40.741 0.00 0.00 0.00 3.66
3671 3763 5.907207 TCTCTACTTCATCTTGTACCATGC 58.093 41.667 0.00 0.00 0.00 4.06
3672 3764 5.422012 TCTCTACTTCATCTTGTACCATGCA 59.578 40.000 0.00 0.00 0.00 3.96
3676 3768 6.199937 ACTTCATCTTGTACCATGCATTTC 57.800 37.500 0.00 0.00 0.00 2.17
3677 3769 5.948162 ACTTCATCTTGTACCATGCATTTCT 59.052 36.000 0.00 0.00 0.00 2.52
3678 3770 6.435277 ACTTCATCTTGTACCATGCATTTCTT 59.565 34.615 0.00 0.00 0.00 2.52
3679 3771 6.198650 TCATCTTGTACCATGCATTTCTTG 57.801 37.500 0.00 0.00 0.00 3.02
3703 3828 1.482593 ACTTGCTCGTATGGCTAGCTT 59.517 47.619 15.72 5.30 36.90 3.74
3754 3879 4.463879 CCAGCTGAGGCCCGTGAG 62.464 72.222 17.39 0.00 39.73 3.51
3757 3882 2.125350 GCTGAGGCCCGTGAGAAG 60.125 66.667 0.00 0.00 0.00 2.85
3774 3899 4.006319 GAGAAGAGCAGTGCCATTAGTTT 58.994 43.478 12.58 0.00 0.00 2.66
3798 3923 2.961741 TGCTGTTTTTATCCTGCCAACA 59.038 40.909 0.00 0.00 0.00 3.33
3799 3924 3.577848 TGCTGTTTTTATCCTGCCAACAT 59.422 39.130 0.00 0.00 0.00 2.71
3800 3925 4.040217 TGCTGTTTTTATCCTGCCAACATT 59.960 37.500 0.00 0.00 0.00 2.71
3801 3926 5.244851 TGCTGTTTTTATCCTGCCAACATTA 59.755 36.000 0.00 0.00 0.00 1.90
3834 4002 0.593128 CTGCACCTTTGGCACTGTAC 59.407 55.000 0.00 0.00 36.11 2.90
3852 4020 2.332063 ACCAAGTCAACACTCACTGG 57.668 50.000 0.00 0.00 35.06 4.00
3884 4052 5.163405 GGATGAGCATTCAAGTAGTGGAGTA 60.163 44.000 0.00 0.00 36.78 2.59
3929 4117 1.552337 TGACTGAATCTCCTGCTCACC 59.448 52.381 0.00 0.00 0.00 4.02
3973 4161 0.337773 TGCCTGAGAGATCTCCCAGT 59.662 55.000 26.87 7.63 42.20 4.00
3992 4180 3.432335 CCCCACCCCAGGCATCAT 61.432 66.667 0.00 0.00 0.00 2.45
3993 4181 2.691732 CCCACCCCAGGCATCATT 59.308 61.111 0.00 0.00 0.00 2.57
3994 4182 1.759299 CCCACCCCAGGCATCATTG 60.759 63.158 0.00 0.00 0.00 2.82
4053 4250 0.690192 TGGTGCCTGCAGCTTACTTA 59.310 50.000 20.50 0.00 43.96 2.24
4055 4252 1.339151 GGTGCCTGCAGCTTACTTACT 60.339 52.381 8.66 0.00 44.23 2.24
4056 4253 2.427506 GTGCCTGCAGCTTACTTACTT 58.572 47.619 8.66 0.00 44.23 2.24
4057 4254 2.160417 GTGCCTGCAGCTTACTTACTTG 59.840 50.000 8.66 0.00 44.23 3.16
4058 4255 1.131315 GCCTGCAGCTTACTTACTTGC 59.869 52.381 8.66 0.00 38.99 4.01
4059 4256 2.426522 CCTGCAGCTTACTTACTTGCA 58.573 47.619 8.66 0.00 0.00 4.08
4101 4305 2.115911 TGGTCGTGGTGTTTGGCAC 61.116 57.895 0.00 0.00 46.97 5.01
4123 4342 2.032178 GCCGTTGCCTGATGATTAGTTC 59.968 50.000 0.00 0.00 0.00 3.01
4133 4352 5.079689 TGATGATTAGTTCGGTGCTGTTA 57.920 39.130 0.00 0.00 0.00 2.41
4146 4374 2.224314 GTGCTGTTAAGAAGTGTGCCTC 59.776 50.000 0.00 0.00 0.00 4.70
4174 4402 4.860022 AGTTTGGAACATAATAGCTGGCT 58.140 39.130 0.00 0.00 39.30 4.75
4175 4403 5.264395 AGTTTGGAACATAATAGCTGGCTT 58.736 37.500 0.00 0.00 39.30 4.35
4176 4404 5.126061 AGTTTGGAACATAATAGCTGGCTTG 59.874 40.000 0.00 0.00 39.30 4.01
4177 4405 3.554934 TGGAACATAATAGCTGGCTTGG 58.445 45.455 0.00 0.00 0.00 3.61
4178 4406 2.294512 GGAACATAATAGCTGGCTTGGC 59.705 50.000 0.00 0.00 0.00 4.52
4200 4428 5.278022 GGCTAGTTCAACAGTTTCCAAAGAG 60.278 44.000 0.00 0.00 0.00 2.85
4219 4447 6.641169 AAGAGCTTTGGTTTCTTAAAGGAG 57.359 37.500 0.00 0.00 35.10 3.69
4222 4450 6.833933 AGAGCTTTGGTTTCTTAAAGGAGAAA 59.166 34.615 0.00 0.00 41.88 2.52
4243 4471 3.030291 AGAGGAAAGATCATGCGAGTCT 58.970 45.455 0.00 0.00 0.00 3.24
4273 4501 1.065126 GGCACCTCTGCTTTGGTATCT 60.065 52.381 0.00 0.00 43.66 1.98
4276 4504 1.630369 ACCTCTGCTTTGGTATCTGCA 59.370 47.619 0.00 0.00 34.36 4.41
4277 4505 2.040278 ACCTCTGCTTTGGTATCTGCAA 59.960 45.455 0.00 0.00 34.36 4.08
4285 4513 1.819928 TGGTATCTGCAATTGCGTGT 58.180 45.000 24.58 14.82 45.83 4.49
4289 4517 0.723414 ATCTGCAATTGCGTGTCTCG 59.277 50.000 24.58 7.54 45.83 4.04
4305 4533 3.184683 CGCTCGCACTTCTCAGGC 61.185 66.667 0.00 0.00 0.00 4.85
4306 4534 2.817396 GCTCGCACTTCTCAGGCC 60.817 66.667 0.00 0.00 0.00 5.19
4308 4536 3.672295 CTCGCACTTCTCAGGCCCC 62.672 68.421 0.00 0.00 0.00 5.80
4313 4541 0.250513 CACTTCTCAGGCCCCTGTAC 59.749 60.000 13.66 0.00 43.96 2.90
4333 4561 7.336679 CCTGTACAGTTTTCCATCAATGATACA 59.663 37.037 21.18 0.00 0.00 2.29
4343 4571 6.283694 TCCATCAATGATACAGTGAGCTAAC 58.716 40.000 0.00 0.00 41.62 2.34
4345 4573 5.675684 TCAATGATACAGTGAGCTAACCA 57.324 39.130 0.00 0.00 33.50 3.67
4352 4580 2.903784 ACAGTGAGCTAACCATGGTGTA 59.096 45.455 20.60 11.86 0.00 2.90
4380 4609 4.700700 TGTCTAACATCATGATGCCTCTG 58.299 43.478 31.17 18.18 42.39 3.35
4447 4689 1.751437 GTTCCTGCTACCCATTGTCC 58.249 55.000 0.00 0.00 0.00 4.02
4460 4702 3.427503 CCCATTGTCCATTACGCAGTTTC 60.428 47.826 0.00 0.00 37.78 2.78
4461 4703 3.190327 CCATTGTCCATTACGCAGTTTCA 59.810 43.478 0.00 0.00 37.78 2.69
4464 4706 4.418013 TGTCCATTACGCAGTTTCATTG 57.582 40.909 0.00 0.00 37.78 2.82
4466 4708 2.816672 TCCATTACGCAGTTTCATTGCA 59.183 40.909 0.00 0.00 37.78 4.08
4480 4722 5.512753 TTCATTGCAGCACTTTACTTCAA 57.487 34.783 0.00 0.00 0.00 2.69
4482 4724 6.088016 TCATTGCAGCACTTTACTTCAATT 57.912 33.333 0.00 0.00 30.14 2.32
4483 4725 5.921976 TCATTGCAGCACTTTACTTCAATTG 59.078 36.000 0.00 0.00 30.14 2.32
4484 4726 3.641648 TGCAGCACTTTACTTCAATTGC 58.358 40.909 0.00 0.00 0.00 3.56
4485 4727 2.658325 GCAGCACTTTACTTCAATTGCG 59.342 45.455 0.00 0.00 32.97 4.85
4486 4728 3.853307 GCAGCACTTTACTTCAATTGCGT 60.853 43.478 0.00 3.09 32.97 5.24
4487 4729 3.665409 CAGCACTTTACTTCAATTGCGTG 59.335 43.478 0.00 1.04 32.97 5.34
4488 4730 3.315191 AGCACTTTACTTCAATTGCGTGT 59.685 39.130 0.00 2.07 32.97 4.49
4489 4731 3.421888 GCACTTTACTTCAATTGCGTGTG 59.578 43.478 0.00 6.47 0.00 3.82
4494 4736 6.702723 ACTTTACTTCAATTGCGTGTGTACTA 59.297 34.615 0.00 0.00 0.00 1.82
4496 4738 4.878439 ACTTCAATTGCGTGTGTACTAGA 58.122 39.130 0.00 0.00 0.00 2.43
4497 4739 5.294356 ACTTCAATTGCGTGTGTACTAGAA 58.706 37.500 0.00 0.00 0.00 2.10
4502 4744 4.787260 TTGCGTGTGTACTAGAATACCA 57.213 40.909 0.00 0.00 0.00 3.25
4507 4749 5.449588 GCGTGTGTACTAGAATACCAAGCTA 60.450 44.000 0.00 0.00 32.96 3.32
4509 4751 6.271566 GTGTGTACTAGAATACCAAGCTACC 58.728 44.000 0.00 0.00 0.00 3.18
4512 4754 4.003584 ACTAGAATACCAAGCTACCCCA 57.996 45.455 0.00 0.00 0.00 4.96
4531 4777 7.154191 ACCCCATGTGAATATCAATACTCTT 57.846 36.000 0.00 0.00 0.00 2.85
4533 4779 8.723365 ACCCCATGTGAATATCAATACTCTTAA 58.277 33.333 0.00 0.00 0.00 1.85
4559 4805 8.067751 AGTACAAGTCAGATAGTTAGATGCAA 57.932 34.615 0.00 0.00 0.00 4.08
4608 4854 5.127031 CCCTTTCTTGGGTAAACATGTATGG 59.873 44.000 0.00 0.00 42.25 2.74
4638 4884 5.559770 TGTTCTCATGCATGTTTCCTCTTA 58.440 37.500 25.43 2.73 0.00 2.10
4663 4909 3.581024 TGCATTCCATTTCAGCTTGAC 57.419 42.857 0.00 0.00 0.00 3.18
4897 5143 0.329261 CTCTCCCTGTTCCAATGCCA 59.671 55.000 0.00 0.00 0.00 4.92
4931 5177 5.248020 ACTCATGAAAGACATCCAGAACTCT 59.752 40.000 0.00 0.00 37.07 3.24
4944 5190 3.446873 CCAGAACTCTGACATCTACAGCT 59.553 47.826 8.33 0.00 46.59 4.24
4949 5195 3.576118 ACTCTGACATCTACAGCTTGTGT 59.424 43.478 0.00 0.00 43.86 3.72
5198 5444 0.534203 GGAAGACACCGGTTGCAGAA 60.534 55.000 2.97 0.00 0.00 3.02
5262 5508 1.342819 AGAAGAGCAAGCACGAGAAGT 59.657 47.619 0.00 0.00 0.00 3.01
5306 5552 0.320771 CCCTGAACAACCTCCAGACG 60.321 60.000 0.00 0.00 0.00 4.18
5440 5686 1.471327 GCTGCTGACCTGATGAGAGTC 60.471 57.143 0.00 0.00 0.00 3.36
5651 6526 2.164219 TGAATCTGCCCATTTTTCGAGC 59.836 45.455 0.00 0.00 0.00 5.03
5675 6550 2.746269 TGAGACGGTACTTTTCGTTGG 58.254 47.619 0.00 0.00 39.88 3.77
5696 6571 2.482374 GCCTGTTGCTGATCACGC 59.518 61.111 9.41 9.41 36.87 5.34
5717 6592 4.574674 CCTGCCAGGGCTATATAAATGA 57.425 45.455 12.19 0.00 42.51 2.57
5735 6610 3.140325 TGAAGCCTAAGGTTTCCTGTG 57.860 47.619 0.00 0.00 41.26 3.66
5743 6618 4.827284 CCTAAGGTTTCCTGTGACAACATT 59.173 41.667 0.00 0.00 35.22 2.71
5759 6639 9.490663 GTGACAACATTATATAAGCAAAGTGAC 57.509 33.333 1.02 0.00 0.00 3.67
5760 6640 8.387354 TGACAACATTATATAAGCAAAGTGACG 58.613 33.333 1.02 0.00 0.00 4.35
5826 6706 8.368668 CCATTAAGAGATATAGTTTCGAACCCT 58.631 37.037 0.00 0.00 0.00 4.34
5838 6718 9.712305 ATAGTTTCGAACCCTCTTATTCATATG 57.288 33.333 0.00 0.00 0.00 1.78
5839 6719 7.792032 AGTTTCGAACCCTCTTATTCATATGA 58.208 34.615 0.00 0.00 0.00 2.15
5840 6720 8.432805 AGTTTCGAACCCTCTTATTCATATGAT 58.567 33.333 6.17 0.00 0.00 2.45
5841 6721 8.713271 GTTTCGAACCCTCTTATTCATATGATC 58.287 37.037 6.17 0.00 0.00 2.92
5842 6722 7.539034 TCGAACCCTCTTATTCATATGATCA 57.461 36.000 6.17 0.00 0.00 2.92
5843 6723 7.606349 TCGAACCCTCTTATTCATATGATCAG 58.394 38.462 6.17 3.34 0.00 2.90
5844 6724 7.451566 TCGAACCCTCTTATTCATATGATCAGA 59.548 37.037 6.17 7.42 0.00 3.27
5845 6725 8.256605 CGAACCCTCTTATTCATATGATCAGAT 58.743 37.037 6.17 0.00 0.00 2.90
5890 6775 7.395190 AAAGCAGTATCAAATATCTGTTGCA 57.605 32.000 0.00 0.00 0.00 4.08
5892 6777 7.024340 AGCAGTATCAAATATCTGTTGCAAG 57.976 36.000 0.00 0.00 0.00 4.01
5913 6798 2.373224 CTGGAATTTTGAGGCTCTCCC 58.627 52.381 16.72 8.02 0.00 4.30
5919 6804 3.652057 TTTTGAGGCTCTCCCTTATGG 57.348 47.619 16.72 0.00 46.60 2.74
5992 6878 8.782137 AATTACTACATCAATTAAGGGCCAAT 57.218 30.769 6.18 0.00 0.00 3.16
5993 6879 7.581213 TTACTACATCAATTAAGGGCCAATG 57.419 36.000 6.18 0.00 0.00 2.82
5994 6880 3.825143 ACATCAATTAAGGGCCAATGC 57.175 42.857 6.18 0.00 0.00 3.56
5995 6881 3.106054 ACATCAATTAAGGGCCAATGCA 58.894 40.909 6.18 0.00 40.13 3.96
5996 6882 3.518705 ACATCAATTAAGGGCCAATGCAA 59.481 39.130 6.18 0.00 40.13 4.08
6052 6938 9.813826 ATGTAATATTCCTCCTATTTTTCCAGG 57.186 33.333 0.00 0.00 0.00 4.45
6168 7054 7.338196 TCTTCTTGATCACCTAGTACAGAGAAG 59.662 40.741 15.55 15.55 38.32 2.85
6195 7082 2.169330 TCAAGTGCCATAAAGCATGCA 58.831 42.857 21.98 0.00 46.24 3.96
6347 7372 3.815407 AAAGCAGCCCACCACCAGG 62.815 63.158 0.00 0.00 42.21 4.45
6361 7386 1.628340 CACCAGGTGGACCATTGTCTA 59.372 52.381 12.40 0.00 41.47 2.59
6373 7398 4.573900 ACCATTGTCTAGAGCTTTCTGTG 58.426 43.478 0.00 0.00 0.00 3.66
6378 7403 3.576118 TGTCTAGAGCTTTCTGTGCTTCT 59.424 43.478 0.00 0.00 41.30 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.082523 ATGTCACCTCCACCGCGG 62.083 66.667 26.86 26.86 0.00 6.46
25 26 2.509336 GATGTCACCTCCACCGCG 60.509 66.667 0.00 0.00 0.00 6.46
26 27 2.509336 CGATGTCACCTCCACCGC 60.509 66.667 0.00 0.00 0.00 5.68
27 28 2.509336 GCGATGTCACCTCCACCG 60.509 66.667 0.00 0.00 0.00 4.94
28 29 1.327690 TAGGCGATGTCACCTCCACC 61.328 60.000 0.00 0.00 37.50 4.61
29 30 0.535335 TTAGGCGATGTCACCTCCAC 59.465 55.000 0.00 0.00 37.50 4.02
30 31 0.824109 CTTAGGCGATGTCACCTCCA 59.176 55.000 0.00 0.00 37.50 3.86
31 32 0.530870 GCTTAGGCGATGTCACCTCC 60.531 60.000 0.00 0.00 37.50 4.30
32 33 0.175760 TGCTTAGGCGATGTCACCTC 59.824 55.000 0.00 0.00 42.25 3.85
33 34 0.176680 CTGCTTAGGCGATGTCACCT 59.823 55.000 0.00 0.00 42.25 4.00
34 35 0.108138 ACTGCTTAGGCGATGTCACC 60.108 55.000 0.00 0.00 42.25 4.02
35 36 1.661112 GAACTGCTTAGGCGATGTCAC 59.339 52.381 0.00 0.00 42.25 3.67
36 37 1.735700 CGAACTGCTTAGGCGATGTCA 60.736 52.381 0.00 0.00 42.25 3.58
37 38 0.924090 CGAACTGCTTAGGCGATGTC 59.076 55.000 0.00 0.00 42.25 3.06
38 39 0.530744 TCGAACTGCTTAGGCGATGT 59.469 50.000 0.00 0.00 42.25 3.06
39 40 1.789464 GATCGAACTGCTTAGGCGATG 59.211 52.381 0.00 0.00 41.21 3.84
40 41 1.269831 GGATCGAACTGCTTAGGCGAT 60.270 52.381 0.00 0.00 43.48 4.58
41 42 0.102481 GGATCGAACTGCTTAGGCGA 59.898 55.000 0.00 0.00 42.25 5.54
42 43 0.179111 TGGATCGAACTGCTTAGGCG 60.179 55.000 0.00 0.00 42.25 5.52
43 44 1.291132 GTGGATCGAACTGCTTAGGC 58.709 55.000 0.00 0.00 39.26 3.93
44 45 1.134367 TCGTGGATCGAACTGCTTAGG 59.866 52.381 0.00 0.00 45.98 2.69
45 46 2.561733 TCGTGGATCGAACTGCTTAG 57.438 50.000 0.00 0.00 45.98 2.18
54 55 1.371337 CCACCGTAGTCGTGGATCGA 61.371 60.000 0.52 0.00 46.83 3.59
55 56 1.063649 CCACCGTAGTCGTGGATCG 59.936 63.158 0.52 0.00 39.06 3.69
56 57 1.226888 GCCACCGTAGTCGTGGATC 60.227 63.158 11.10 0.00 39.06 3.36
57 58 2.890371 GCCACCGTAGTCGTGGAT 59.110 61.111 11.10 0.00 39.06 3.41
58 59 3.740397 CGCCACCGTAGTCGTGGA 61.740 66.667 11.10 0.00 39.06 4.02
113 114 4.214327 CTTCTCCTCCTCGCCGGC 62.214 72.222 19.07 19.07 0.00 6.13
114 115 3.532155 CCTTCTCCTCCTCGCCGG 61.532 72.222 0.00 0.00 0.00 6.13
115 116 2.010582 CTTCCTTCTCCTCCTCGCCG 62.011 65.000 0.00 0.00 0.00 6.46
116 117 0.684805 TCTTCCTTCTCCTCCTCGCC 60.685 60.000 0.00 0.00 0.00 5.54
117 118 0.744281 CTCTTCCTTCTCCTCCTCGC 59.256 60.000 0.00 0.00 0.00 5.03
118 119 1.398692 CCTCTTCCTTCTCCTCCTCG 58.601 60.000 0.00 0.00 0.00 4.63
119 120 1.788229 CCCTCTTCCTTCTCCTCCTC 58.212 60.000 0.00 0.00 0.00 3.71
120 121 0.326143 GCCCTCTTCCTTCTCCTCCT 60.326 60.000 0.00 0.00 0.00 3.69
121 122 0.618968 TGCCCTCTTCCTTCTCCTCC 60.619 60.000 0.00 0.00 0.00 4.30
122 123 0.829990 CTGCCCTCTTCCTTCTCCTC 59.170 60.000 0.00 0.00 0.00 3.71
123 124 0.415429 TCTGCCCTCTTCCTTCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
124 125 0.829990 CTCTGCCCTCTTCCTTCTCC 59.170 60.000 0.00 0.00 0.00 3.71
125 126 0.177836 GCTCTGCCCTCTTCCTTCTC 59.822 60.000 0.00 0.00 0.00 2.87
126 127 1.612395 CGCTCTGCCCTCTTCCTTCT 61.612 60.000 0.00 0.00 0.00 2.85
127 128 1.153469 CGCTCTGCCCTCTTCCTTC 60.153 63.158 0.00 0.00 0.00 3.46
128 129 2.664081 CCGCTCTGCCCTCTTCCTT 61.664 63.158 0.00 0.00 0.00 3.36
129 130 3.080121 CCGCTCTGCCCTCTTCCT 61.080 66.667 0.00 0.00 0.00 3.36
130 131 4.168291 CCCGCTCTGCCCTCTTCC 62.168 72.222 0.00 0.00 0.00 3.46
131 132 4.168291 CCCCGCTCTGCCCTCTTC 62.168 72.222 0.00 0.00 0.00 2.87
148 149 4.736896 GTCGAGCCACACCCCGAC 62.737 72.222 0.00 0.00 43.28 4.79
178 179 3.497031 GCTCGCACCGTTTAGGGC 61.497 66.667 0.00 0.00 46.96 5.19
179 180 2.818274 GGCTCGCACCGTTTAGGG 60.818 66.667 0.00 0.00 46.96 3.53
192 193 4.247380 CTGGGATGAGGCCGGCTC 62.247 72.222 28.56 21.30 0.00 4.70
194 195 4.554036 GACTGGGATGAGGCCGGC 62.554 72.222 21.18 21.18 0.00 6.13
195 196 3.083349 TGACTGGGATGAGGCCGG 61.083 66.667 0.00 0.00 0.00 6.13
196 197 2.503061 CTGACTGGGATGAGGCCG 59.497 66.667 0.00 0.00 0.00 6.13
197 198 2.191641 GCTGACTGGGATGAGGCC 59.808 66.667 0.00 0.00 0.00 5.19
198 199 2.202987 CGCTGACTGGGATGAGGC 60.203 66.667 0.00 0.00 0.00 4.70
199 200 2.202987 GCGCTGACTGGGATGAGG 60.203 66.667 0.00 0.00 0.00 3.86
200 201 1.227205 GAGCGCTGACTGGGATGAG 60.227 63.158 18.48 0.00 0.00 2.90
201 202 1.953231 CTGAGCGCTGACTGGGATGA 61.953 60.000 18.48 0.00 0.00 2.92
202 203 1.521010 CTGAGCGCTGACTGGGATG 60.521 63.158 18.48 0.00 0.00 3.51
203 204 1.954362 GACTGAGCGCTGACTGGGAT 61.954 60.000 18.48 0.00 0.00 3.85
204 205 2.601666 ACTGAGCGCTGACTGGGA 60.602 61.111 18.48 0.00 0.00 4.37
205 206 2.125753 GACTGAGCGCTGACTGGG 60.126 66.667 18.48 0.00 0.00 4.45
206 207 1.445754 CTGACTGAGCGCTGACTGG 60.446 63.158 18.48 0.00 0.00 4.00
207 208 2.093473 GCTGACTGAGCGCTGACTG 61.093 63.158 18.48 8.20 38.15 3.51
208 209 2.261052 GCTGACTGAGCGCTGACT 59.739 61.111 18.48 0.00 38.15 3.41
268 269 3.802852 AAGTTGACCGGTTGGGCCC 62.803 63.158 17.59 17.59 46.01 5.80
269 270 1.396607 AAAAGTTGACCGGTTGGGCC 61.397 55.000 9.42 0.00 46.01 5.80
271 272 1.336755 CAGAAAAGTTGACCGGTTGGG 59.663 52.381 9.42 0.00 40.75 4.12
272 273 2.021457 ACAGAAAAGTTGACCGGTTGG 58.979 47.619 9.42 0.00 42.84 3.77
273 274 2.680841 TGACAGAAAAGTTGACCGGTTG 59.319 45.455 9.42 1.26 0.00 3.77
274 275 2.993937 TGACAGAAAAGTTGACCGGTT 58.006 42.857 9.42 0.00 0.00 4.44
275 276 2.702592 TGACAGAAAAGTTGACCGGT 57.297 45.000 6.92 6.92 0.00 5.28
276 277 4.377022 CGTATTGACAGAAAAGTTGACCGG 60.377 45.833 0.00 0.00 0.00 5.28
277 278 4.210537 ACGTATTGACAGAAAAGTTGACCG 59.789 41.667 0.00 0.00 0.00 4.79
278 279 5.668558 ACGTATTGACAGAAAAGTTGACC 57.331 39.130 0.00 0.00 0.00 4.02
285 286 9.866936 GTGTGTTTTATACGTATTGACAGAAAA 57.133 29.630 14.33 10.06 0.00 2.29
286 287 9.263538 AGTGTGTTTTATACGTATTGACAGAAA 57.736 29.630 14.33 4.17 0.00 2.52
287 288 8.821147 AGTGTGTTTTATACGTATTGACAGAA 57.179 30.769 14.33 0.00 0.00 3.02
288 289 8.821147 AAGTGTGTTTTATACGTATTGACAGA 57.179 30.769 14.33 11.42 0.00 3.41
289 290 9.872757 AAAAGTGTGTTTTATACGTATTGACAG 57.127 29.630 14.33 0.00 0.00 3.51
321 322 2.026879 GGCGAGCCGTTGCAAAAA 59.973 55.556 0.00 0.00 41.13 1.94
322 323 3.972276 GGGCGAGCCGTTGCAAAA 61.972 61.111 0.00 0.00 41.13 2.44
327 328 3.508840 GATTGGGGCGAGCCGTTG 61.509 66.667 8.14 0.00 36.85 4.10
328 329 3.268103 AAGATTGGGGCGAGCCGTT 62.268 57.895 8.14 0.00 36.85 4.44
329 330 3.717294 AAGATTGGGGCGAGCCGT 61.717 61.111 8.14 0.00 36.85 5.68
330 331 3.204827 CAAGATTGGGGCGAGCCG 61.205 66.667 8.14 0.00 36.85 5.52
331 332 2.830370 CCAAGATTGGGGCGAGCC 60.830 66.667 5.37 5.37 44.70 4.70
362 363 8.416329 GCAGATTGGTATCAAGATTGGTAATTT 58.584 33.333 0.00 0.00 36.19 1.82
363 364 7.781693 AGCAGATTGGTATCAAGATTGGTAATT 59.218 33.333 0.00 0.00 36.19 1.40
364 365 7.293073 AGCAGATTGGTATCAAGATTGGTAAT 58.707 34.615 0.00 0.00 36.19 1.89
365 366 6.662755 AGCAGATTGGTATCAAGATTGGTAA 58.337 36.000 0.00 0.00 36.19 2.85
366 367 6.252599 AGCAGATTGGTATCAAGATTGGTA 57.747 37.500 0.00 0.00 36.19 3.25
367 368 5.121380 AGCAGATTGGTATCAAGATTGGT 57.879 39.130 0.00 0.00 36.19 3.67
368 369 5.009410 GGAAGCAGATTGGTATCAAGATTGG 59.991 44.000 0.00 0.00 36.19 3.16
369 370 5.591472 TGGAAGCAGATTGGTATCAAGATTG 59.409 40.000 0.00 0.00 36.19 2.67
370 371 5.759059 TGGAAGCAGATTGGTATCAAGATT 58.241 37.500 0.00 0.00 36.19 2.40
371 372 5.378230 TGGAAGCAGATTGGTATCAAGAT 57.622 39.130 0.00 0.00 36.19 2.40
372 373 4.842531 TGGAAGCAGATTGGTATCAAGA 57.157 40.909 0.00 0.00 36.19 3.02
373 374 5.735354 GCATTGGAAGCAGATTGGTATCAAG 60.735 44.000 0.00 0.00 36.19 3.02
374 375 4.098349 GCATTGGAAGCAGATTGGTATCAA 59.902 41.667 0.00 0.00 37.28 2.57
375 376 3.633525 GCATTGGAAGCAGATTGGTATCA 59.366 43.478 0.00 0.00 32.95 2.15
376 377 3.005155 GGCATTGGAAGCAGATTGGTATC 59.995 47.826 0.00 0.00 0.00 2.24
377 378 2.961062 GGCATTGGAAGCAGATTGGTAT 59.039 45.455 0.00 0.00 0.00 2.73
378 379 2.378038 GGCATTGGAAGCAGATTGGTA 58.622 47.619 0.00 0.00 0.00 3.25
379 380 1.188863 GGCATTGGAAGCAGATTGGT 58.811 50.000 0.00 0.00 0.00 3.67
380 381 0.462789 GGGCATTGGAAGCAGATTGG 59.537 55.000 0.00 0.00 0.00 3.16
381 382 0.462789 GGGGCATTGGAAGCAGATTG 59.537 55.000 0.00 0.00 0.00 2.67
382 383 0.041535 TGGGGCATTGGAAGCAGATT 59.958 50.000 0.00 0.00 0.00 2.40
383 384 0.041535 TTGGGGCATTGGAAGCAGAT 59.958 50.000 0.00 0.00 0.00 2.90
384 385 0.041535 ATTGGGGCATTGGAAGCAGA 59.958 50.000 0.00 0.00 0.00 4.26
385 386 0.906775 AATTGGGGCATTGGAAGCAG 59.093 50.000 0.00 0.00 0.00 4.24
386 387 0.614294 CAATTGGGGCATTGGAAGCA 59.386 50.000 0.00 0.00 0.00 3.91
387 388 0.614812 ACAATTGGGGCATTGGAAGC 59.385 50.000 10.83 0.00 32.40 3.86
388 389 1.065998 CCACAATTGGGGCATTGGAAG 60.066 52.381 15.25 0.00 39.57 3.46
389 390 0.982704 CCACAATTGGGGCATTGGAA 59.017 50.000 15.25 0.00 39.57 3.53
390 391 2.681348 CCACAATTGGGGCATTGGA 58.319 52.632 15.25 0.00 39.57 3.53
400 401 7.887996 AAATTGCACATAAGTACCACAATTG 57.112 32.000 3.24 3.24 36.62 2.32
401 402 8.802267 AGTAAATTGCACATAAGTACCACAATT 58.198 29.630 0.00 0.00 37.73 2.32
402 403 8.348285 AGTAAATTGCACATAAGTACCACAAT 57.652 30.769 0.00 0.00 0.00 2.71
403 404 7.094549 GGAGTAAATTGCACATAAGTACCACAA 60.095 37.037 0.00 0.00 0.00 3.33
404 405 6.373216 GGAGTAAATTGCACATAAGTACCACA 59.627 38.462 0.00 0.00 0.00 4.17
405 406 6.598064 AGGAGTAAATTGCACATAAGTACCAC 59.402 38.462 0.00 0.00 0.00 4.16
406 407 6.717289 AGGAGTAAATTGCACATAAGTACCA 58.283 36.000 0.00 0.00 0.00 3.25
407 408 6.260271 GGAGGAGTAAATTGCACATAAGTACC 59.740 42.308 0.00 0.00 0.00 3.34
408 409 6.821665 TGGAGGAGTAAATTGCACATAAGTAC 59.178 38.462 0.00 0.00 0.00 2.73
409 410 6.953101 TGGAGGAGTAAATTGCACATAAGTA 58.047 36.000 0.00 0.00 0.00 2.24
410 411 5.815581 TGGAGGAGTAAATTGCACATAAGT 58.184 37.500 0.00 0.00 0.00 2.24
411 412 5.220931 GCTGGAGGAGTAAATTGCACATAAG 60.221 44.000 0.00 0.00 0.00 1.73
412 413 4.640201 GCTGGAGGAGTAAATTGCACATAA 59.360 41.667 0.00 0.00 0.00 1.90
413 414 4.199310 GCTGGAGGAGTAAATTGCACATA 58.801 43.478 0.00 0.00 0.00 2.29
414 415 3.019564 GCTGGAGGAGTAAATTGCACAT 58.980 45.455 0.00 0.00 0.00 3.21
415 416 2.436417 GCTGGAGGAGTAAATTGCACA 58.564 47.619 0.00 0.00 0.00 4.57
416 417 1.398390 CGCTGGAGGAGTAAATTGCAC 59.602 52.381 0.00 0.00 0.00 4.57
417 418 1.678728 CCGCTGGAGGAGTAAATTGCA 60.679 52.381 0.00 0.00 0.00 4.08
418 419 1.017387 CCGCTGGAGGAGTAAATTGC 58.983 55.000 0.00 0.00 0.00 3.56
419 420 1.017387 GCCGCTGGAGGAGTAAATTG 58.983 55.000 0.00 0.00 0.00 2.32
420 421 0.618458 TGCCGCTGGAGGAGTAAATT 59.382 50.000 0.00 0.00 0.00 1.82
421 422 0.618458 TTGCCGCTGGAGGAGTAAAT 59.382 50.000 0.00 0.00 0.00 1.40
422 423 0.618458 ATTGCCGCTGGAGGAGTAAA 59.382 50.000 0.00 0.00 0.00 2.01
423 424 0.178068 GATTGCCGCTGGAGGAGTAA 59.822 55.000 0.00 0.00 0.00 2.24
424 425 0.975556 TGATTGCCGCTGGAGGAGTA 60.976 55.000 0.00 0.00 0.00 2.59
425 426 1.841302 TTGATTGCCGCTGGAGGAGT 61.841 55.000 0.00 0.00 0.00 3.85
426 427 0.677731 TTTGATTGCCGCTGGAGGAG 60.678 55.000 0.00 0.00 0.00 3.69
427 428 0.960364 GTTTGATTGCCGCTGGAGGA 60.960 55.000 0.00 0.00 0.00 3.71
432 433 1.526464 GTTTTGGTTTGATTGCCGCTG 59.474 47.619 0.00 0.00 0.00 5.18
497 521 4.279043 GCGTGTTGGGTTGGTGCC 62.279 66.667 0.00 0.00 0.00 5.01
519 552 4.754667 GGGCAGGTCCGTTCGTCC 62.755 72.222 0.00 0.00 34.94 4.79
731 764 2.047083 AGCAGCACAGCAGAGAGC 60.047 61.111 0.00 0.00 46.19 4.09
733 766 2.212110 TGGAGCAGCACAGCAGAGA 61.212 57.895 0.00 0.00 36.85 3.10
734 767 2.033755 GTGGAGCAGCACAGCAGAG 61.034 63.158 0.00 0.00 36.85 3.35
735 768 2.031616 GTGGAGCAGCACAGCAGA 59.968 61.111 0.00 0.00 36.85 4.26
736 769 3.054503 GGTGGAGCAGCACAGCAG 61.055 66.667 12.75 0.00 36.85 4.24
737 770 3.541950 GAGGTGGAGCAGCACAGCA 62.542 63.158 17.99 0.00 37.55 4.41
738 771 2.745492 GAGGTGGAGCAGCACAGC 60.745 66.667 10.37 10.37 33.95 4.40
740 773 2.104572 GAGTGAGGTGGAGCAGCACA 62.105 60.000 0.00 0.00 33.95 4.57
741 774 1.375268 GAGTGAGGTGGAGCAGCAC 60.375 63.158 0.00 0.00 33.95 4.40
823 856 0.532115 CTTCCAAATTTCGGCTGGGG 59.468 55.000 0.00 0.00 0.00 4.96
830 863 0.793861 TCGCGTCCTTCCAAATTTCG 59.206 50.000 5.77 0.00 0.00 3.46
854 887 1.977544 CTTGACTCCTCGGTCGGGT 60.978 63.158 0.00 0.00 38.91 5.28
918 952 0.676782 AAATCTTGGCCGGGAAGACG 60.677 55.000 2.18 0.00 32.30 4.18
919 953 0.811281 CAAATCTTGGCCGGGAAGAC 59.189 55.000 2.18 0.00 32.30 3.01
920 954 0.695924 TCAAATCTTGGCCGGGAAGA 59.304 50.000 2.18 6.48 34.00 2.87
921 955 1.098050 CTCAAATCTTGGCCGGGAAG 58.902 55.000 2.18 0.00 0.00 3.46
922 956 0.323360 CCTCAAATCTTGGCCGGGAA 60.323 55.000 2.18 0.00 0.00 3.97
923 957 1.302949 CCTCAAATCTTGGCCGGGA 59.697 57.895 2.18 0.00 0.00 5.14
924 958 1.754234 CCCTCAAATCTTGGCCGGG 60.754 63.158 2.18 0.00 0.00 5.73
927 968 1.478631 CTTCCCCTCAAATCTTGGCC 58.521 55.000 0.00 0.00 0.00 5.36
1108 1154 4.874977 GAGGTAGAGCGCGTGGGC 62.875 72.222 8.43 0.00 0.00 5.36
1980 2026 2.125673 GTGGTGATGACGGACGGG 60.126 66.667 0.00 0.00 0.00 5.28
1990 2036 0.038166 GTGGATGTGGTGGTGGTGAT 59.962 55.000 0.00 0.00 0.00 3.06
2076 2122 1.908483 GATCTCGGCCAGGTCCTTT 59.092 57.895 2.24 0.00 0.00 3.11
2103 2149 3.242804 CCTTGAGGAAGTACTCGTCGATC 60.243 52.174 0.00 0.00 41.07 3.69
2215 2261 2.364002 GAGGTAAGCTGATCTGAGGACC 59.636 54.545 3.42 6.48 0.00 4.46
2237 2283 2.230660 GGGATGGACCGATGGAAAATC 58.769 52.381 0.00 0.00 40.11 2.17
2296 2342 3.884895 AGAATTGATCCCATTGCACGTA 58.115 40.909 0.00 0.00 0.00 3.57
2297 2343 2.726821 AGAATTGATCCCATTGCACGT 58.273 42.857 0.00 0.00 0.00 4.49
2298 2344 3.788333 AAGAATTGATCCCATTGCACG 57.212 42.857 0.00 0.00 0.00 5.34
2299 2345 3.118884 AGCAAGAATTGATCCCATTGCAC 60.119 43.478 15.83 0.00 44.15 4.57
2308 2354 4.946157 TCCCTGAAGAAGCAAGAATTGATC 59.054 41.667 0.00 0.00 44.15 2.92
2312 2358 3.563043 CCCTCCCTGAAGAAGCAAGAATT 60.563 47.826 0.00 0.00 0.00 2.17
2383 2429 3.667217 TTCCCGTACCCTCCTCCGG 62.667 68.421 0.00 0.00 40.12 5.14
2430 2479 0.904865 ATGCCTTCGTCTCCTGTCCA 60.905 55.000 0.00 0.00 0.00 4.02
2534 2583 2.372690 CGAACGCACCTTGACCTCG 61.373 63.158 0.00 0.00 0.00 4.63
2547 2596 3.306166 GGGTTACAGATGATGAACGAACG 59.694 47.826 0.00 0.00 0.00 3.95
2581 2631 8.232913 TCCAAAACTGAAGCTAGTAAAACAAT 57.767 30.769 0.00 0.00 0.00 2.71
2584 2634 7.871853 TGATCCAAAACTGAAGCTAGTAAAAC 58.128 34.615 0.00 0.00 0.00 2.43
2585 2635 8.635765 ATGATCCAAAACTGAAGCTAGTAAAA 57.364 30.769 0.00 0.00 0.00 1.52
2591 2641 6.816136 TCGATATGATCCAAAACTGAAGCTA 58.184 36.000 0.00 0.00 0.00 3.32
2609 2659 6.581171 TCTACTGCACATTCTGATCGATAT 57.419 37.500 0.00 0.00 0.00 1.63
2610 2660 5.563671 GCTCTACTGCACATTCTGATCGATA 60.564 44.000 0.00 0.00 0.00 2.92
2619 2669 3.181512 GCTCAAAGCTCTACTGCACATTC 60.182 47.826 0.00 0.00 38.45 2.67
2637 2687 5.505159 GCATTTCGATGAATCAATCTGCTCA 60.505 40.000 0.00 0.00 0.00 4.26
2638 2688 4.910456 GCATTTCGATGAATCAATCTGCTC 59.090 41.667 0.00 0.00 0.00 4.26
2639 2689 4.337274 TGCATTTCGATGAATCAATCTGCT 59.663 37.500 0.00 0.00 0.00 4.24
2640 2690 4.440103 GTGCATTTCGATGAATCAATCTGC 59.560 41.667 0.00 0.00 0.00 4.26
2641 2691 4.669283 CGTGCATTTCGATGAATCAATCTG 59.331 41.667 0.00 0.00 0.00 2.90
2642 2692 4.260907 CCGTGCATTTCGATGAATCAATCT 60.261 41.667 0.00 0.00 0.00 2.40
2643 2693 3.970610 CCGTGCATTTCGATGAATCAATC 59.029 43.478 0.00 0.00 0.00 2.67
2644 2694 3.793129 GCCGTGCATTTCGATGAATCAAT 60.793 43.478 0.00 0.00 0.00 2.57
2646 2696 1.063912 GCCGTGCATTTCGATGAATCA 59.936 47.619 0.00 0.00 0.00 2.57
2653 2735 1.169661 AACCAAGCCGTGCATTTCGA 61.170 50.000 0.00 0.00 0.00 3.71
2685 2767 1.003118 GCCACTCATTCACCCACTGTA 59.997 52.381 0.00 0.00 0.00 2.74
2732 2814 8.693542 ATGATAGTAAAAATCAGCAAAAGCAC 57.306 30.769 0.00 0.00 36.82 4.40
2806 2891 2.197324 GAACCAACTGCCACCCCA 59.803 61.111 0.00 0.00 0.00 4.96
2816 2901 3.378427 ACTTTGCTTGAGACAGAACCAAC 59.622 43.478 0.00 0.00 0.00 3.77
2830 2915 3.221771 TGTGCCAGAATGTACTTTGCTT 58.778 40.909 0.00 0.00 0.00 3.91
2941 3028 3.279434 GGAAGAATCCAAAGGCACGTAT 58.721 45.455 0.00 0.00 45.79 3.06
2981 3068 6.236017 TGCAGGCTATAAAATAACGCATAC 57.764 37.500 0.00 0.00 0.00 2.39
2983 3070 5.766150 TTGCAGGCTATAAAATAACGCAT 57.234 34.783 0.00 0.00 0.00 4.73
2998 3085 3.648339 TGAAATTCTGTCTTTGCAGGC 57.352 42.857 0.00 0.00 37.12 4.85
3004 3091 4.280174 AGCAGCACATGAAATTCTGTCTTT 59.720 37.500 0.00 0.00 0.00 2.52
3054 3143 3.722147 ACTATGCGATGAAGGATCACAC 58.278 45.455 0.00 0.00 38.69 3.82
3070 3159 9.683069 AATGAGCTGAACAAGTTTAAAACTATG 57.317 29.630 0.00 0.00 41.91 2.23
3103 3192 9.216117 GAAACAGCCTATCTTTAGTTCTTTACA 57.784 33.333 0.00 0.00 0.00 2.41
3134 3223 9.994432 GACATTTCATGATTACTTAGTGAAAGG 57.006 33.333 0.00 8.63 42.71 3.11
3295 3386 0.949105 AGTTAGCCAAAGCGGTCACG 60.949 55.000 0.00 0.00 46.67 4.35
3300 3391 0.725117 CGGTTAGTTAGCCAAAGCGG 59.275 55.000 6.12 0.00 46.67 5.52
3349 3440 3.054875 TCTTGTCATGCTCCTGCTTATGT 60.055 43.478 0.00 0.00 40.48 2.29
3351 3442 3.920231 TCTTGTCATGCTCCTGCTTAT 57.080 42.857 0.00 0.00 40.48 1.73
3576 3667 4.108336 CACGAATGAGTGAGTGATGGTAG 58.892 47.826 0.00 0.00 44.43 3.18
3577 3668 3.509967 ACACGAATGAGTGAGTGATGGTA 59.490 43.478 7.69 0.00 44.43 3.25
3578 3669 2.300152 ACACGAATGAGTGAGTGATGGT 59.700 45.455 7.69 0.00 44.43 3.55
3579 3670 2.964740 ACACGAATGAGTGAGTGATGG 58.035 47.619 7.69 0.00 44.43 3.51
3580 3671 3.859961 GGTACACGAATGAGTGAGTGATG 59.140 47.826 7.69 0.00 44.43 3.07
3581 3672 4.111375 GGTACACGAATGAGTGAGTGAT 57.889 45.455 7.69 0.00 44.43 3.06
3582 3673 3.570926 GGTACACGAATGAGTGAGTGA 57.429 47.619 7.69 0.00 44.43 3.41
3596 3688 3.800506 GGTACTTGATGCATACGGTACAC 59.199 47.826 24.06 15.67 33.47 2.90
3622 3714 4.530710 TGTTCATGTGAGGTACTGGTAC 57.469 45.455 2.58 2.58 41.55 3.34
3623 3715 4.530553 ACATGTTCATGTGAGGTACTGGTA 59.469 41.667 16.19 0.00 41.55 3.25
3624 3716 3.327757 ACATGTTCATGTGAGGTACTGGT 59.672 43.478 16.19 0.00 41.55 4.00
3625 3717 3.935203 GACATGTTCATGTGAGGTACTGG 59.065 47.826 20.83 0.00 34.36 4.00
3627 3719 4.774726 AGAGACATGTTCATGTGAGGTACT 59.225 41.667 20.83 11.45 36.51 2.73
3628 3720 5.078411 AGAGACATGTTCATGTGAGGTAC 57.922 43.478 20.83 7.37 34.45 3.34
3629 3721 5.019470 AGAGAGACATGTTCATGTGAGGTA 58.981 41.667 20.83 0.00 34.45 3.08
3630 3722 3.837146 AGAGAGACATGTTCATGTGAGGT 59.163 43.478 20.83 5.13 34.45 3.85
3631 3723 4.468765 AGAGAGACATGTTCATGTGAGG 57.531 45.455 20.83 0.00 34.45 3.86
3632 3724 6.206395 AGTAGAGAGACATGTTCATGTGAG 57.794 41.667 20.83 0.00 34.45 3.51
3633 3725 6.209391 TGAAGTAGAGAGACATGTTCATGTGA 59.791 38.462 20.83 0.00 34.45 3.58
3634 3726 6.393171 TGAAGTAGAGAGACATGTTCATGTG 58.607 40.000 20.83 0.00 34.45 3.21
3635 3727 6.596309 TGAAGTAGAGAGACATGTTCATGT 57.404 37.500 16.78 16.78 37.50 3.21
3636 3728 7.490840 AGATGAAGTAGAGAGACATGTTCATG 58.509 38.462 0.00 10.72 34.21 3.07
3637 3729 7.658525 AGATGAAGTAGAGAGACATGTTCAT 57.341 36.000 0.00 1.35 36.20 2.57
3638 3730 7.039434 ACAAGATGAAGTAGAGAGACATGTTCA 60.039 37.037 0.00 0.00 0.00 3.18
3639 3731 7.319646 ACAAGATGAAGTAGAGAGACATGTTC 58.680 38.462 0.00 0.00 0.00 3.18
3640 3732 7.238486 ACAAGATGAAGTAGAGAGACATGTT 57.762 36.000 0.00 0.00 0.00 2.71
3681 3773 3.305398 GCTAGCCATACGAGCAAGTAT 57.695 47.619 2.29 0.00 45.53 2.12
3682 3774 2.795175 GCTAGCCATACGAGCAAGTA 57.205 50.000 2.29 0.00 45.53 2.24
3689 3781 0.104855 CAGCCAAGCTAGCCATACGA 59.895 55.000 12.13 0.00 36.40 3.43
3690 3782 0.882042 CCAGCCAAGCTAGCCATACG 60.882 60.000 12.13 0.00 36.40 3.06
3691 3783 0.469917 TCCAGCCAAGCTAGCCATAC 59.530 55.000 12.13 0.00 36.40 2.39
3693 3785 1.225704 GTCCAGCCAAGCTAGCCAT 59.774 57.895 12.13 0.00 36.40 4.40
3694 3786 1.565390 ATGTCCAGCCAAGCTAGCCA 61.565 55.000 12.13 0.00 36.40 4.75
3695 3787 0.469917 TATGTCCAGCCAAGCTAGCC 59.530 55.000 12.13 0.00 36.40 3.93
3696 3788 2.149578 CATATGTCCAGCCAAGCTAGC 58.850 52.381 6.62 6.62 36.40 3.42
3697 3789 2.369860 TCCATATGTCCAGCCAAGCTAG 59.630 50.000 1.24 0.00 36.40 3.42
3703 3828 0.546122 GTGGTCCATATGTCCAGCCA 59.454 55.000 14.54 6.89 31.54 4.75
3733 3858 4.479993 CGGGCCTCAGCTGGGAAG 62.480 72.222 17.43 4.29 39.73 3.46
3741 3866 1.515020 CTCTTCTCACGGGCCTCAG 59.485 63.158 0.84 0.00 0.00 3.35
3754 3879 4.773323 AAAACTAATGGCACTGCTCTTC 57.227 40.909 0.00 0.00 0.00 2.87
3774 3899 4.679373 TGGCAGGATAAAAACAGCAAAA 57.321 36.364 0.00 0.00 0.00 2.44
3786 3911 6.291377 GTCTGAATCTAATGTTGGCAGGATA 58.709 40.000 0.00 0.00 0.00 2.59
3798 3923 3.881688 GTGCAGCATGGTCTGAATCTAAT 59.118 43.478 0.00 0.00 36.19 1.73
3799 3924 3.273434 GTGCAGCATGGTCTGAATCTAA 58.727 45.455 0.00 0.00 36.19 2.10
3800 3925 2.420547 GGTGCAGCATGGTCTGAATCTA 60.421 50.000 11.86 0.00 36.19 1.98
3801 3926 1.681166 GGTGCAGCATGGTCTGAATCT 60.681 52.381 11.86 0.00 36.19 2.40
3834 4002 2.332063 ACCAGTGAGTGTTGACTTGG 57.668 50.000 0.00 0.00 34.79 3.61
3852 4020 4.219288 ACTTGAATGCTCATCCTTCCAAAC 59.781 41.667 0.00 0.00 0.00 2.93
3884 4052 4.973168 ACAGTCAACACCACTATCACATT 58.027 39.130 0.00 0.00 0.00 2.71
3929 4117 3.186817 CCTAGCTAGTACTGACCGAATCG 59.813 52.174 19.31 0.00 0.00 3.34
3994 4182 1.751927 CTGGACCAGGCAATGAGGC 60.752 63.158 14.26 0.00 44.61 4.70
3995 4183 1.751927 GCTGGACCAGGCAATGAGG 60.752 63.158 23.09 0.00 31.21 3.86
3996 4184 1.030488 CAGCTGGACCAGGCAATGAG 61.030 60.000 23.09 0.00 31.21 2.90
4039 4232 2.426522 TGCAAGTAAGTAAGCTGCAGG 58.573 47.619 17.12 0.00 0.00 4.85
4043 4236 5.611796 TGATGTTGCAAGTAAGTAAGCTG 57.388 39.130 0.00 0.00 0.00 4.24
4053 4250 4.441913 CCTCAAAGGTTTGATGTTGCAAGT 60.442 41.667 0.00 0.00 45.26 3.16
4055 4252 4.057406 CCTCAAAGGTTTGATGTTGCAA 57.943 40.909 5.63 0.00 45.26 4.08
4056 4253 3.731652 CCTCAAAGGTTTGATGTTGCA 57.268 42.857 5.63 0.00 45.26 4.08
4101 4305 0.583438 CTAATCATCAGGCAACGGCG 59.417 55.000 4.80 4.80 46.39 6.46
4103 4307 2.285220 CGAACTAATCATCAGGCAACGG 59.715 50.000 0.00 0.00 46.39 4.44
4105 4309 3.063997 CACCGAACTAATCATCAGGCAAC 59.936 47.826 0.00 0.00 0.00 4.17
4123 4342 1.069906 GCACACTTCTTAACAGCACCG 60.070 52.381 0.00 0.00 0.00 4.94
4133 4352 3.243724 ACTTCCTAGAGGCACACTTCTT 58.756 45.455 0.00 0.00 34.44 2.52
4146 4374 7.227512 CCAGCTATTATGTTCCAAACTTCCTAG 59.772 40.741 0.00 0.00 0.00 3.02
4174 4402 3.892284 TGGAAACTGTTGAACTAGCCAA 58.108 40.909 0.00 0.00 0.00 4.52
4175 4403 3.569194 TGGAAACTGTTGAACTAGCCA 57.431 42.857 0.00 0.00 0.00 4.75
4176 4404 4.578928 TCTTTGGAAACTGTTGAACTAGCC 59.421 41.667 0.00 0.00 0.00 3.93
4177 4405 5.751243 TCTTTGGAAACTGTTGAACTAGC 57.249 39.130 0.00 0.00 0.00 3.42
4178 4406 5.529060 AGCTCTTTGGAAACTGTTGAACTAG 59.471 40.000 0.00 0.00 0.00 2.57
4200 4428 7.039313 TCTTTCTCCTTTAAGAAACCAAAGC 57.961 36.000 0.00 0.00 39.67 3.51
4219 4447 4.187694 ACTCGCATGATCTTTCCTCTTTC 58.812 43.478 0.00 0.00 0.00 2.62
4222 4450 3.030291 AGACTCGCATGATCTTTCCTCT 58.970 45.455 0.00 0.00 0.00 3.69
4243 4471 1.883638 GCAGAGGTGCCATGAACAAGA 60.884 52.381 0.00 0.00 44.72 3.02
4285 4513 1.503994 CTGAGAAGTGCGAGCGAGA 59.496 57.895 0.00 0.00 0.00 4.04
4289 4517 2.817396 GGCCTGAGAAGTGCGAGC 60.817 66.667 0.00 0.00 0.00 5.03
4305 4533 3.433306 TGATGGAAAACTGTACAGGGG 57.567 47.619 26.12 3.32 0.00 4.79
4306 4534 5.009631 TCATTGATGGAAAACTGTACAGGG 58.990 41.667 26.12 4.10 0.00 4.45
4308 4536 8.267620 TGTATCATTGATGGAAAACTGTACAG 57.732 34.615 21.44 21.44 0.00 2.74
4313 4541 7.381766 TCACTGTATCATTGATGGAAAACTG 57.618 36.000 9.46 5.80 0.00 3.16
4333 4561 4.962995 AGTATACACCATGGTTAGCTCACT 59.037 41.667 16.84 10.89 0.00 3.41
4343 4571 7.768582 TGATGTTAGACAAAGTATACACCATGG 59.231 37.037 11.19 11.19 0.00 3.66
4345 4573 9.330063 CATGATGTTAGACAAAGTATACACCAT 57.670 33.333 5.50 0.00 0.00 3.55
4352 4580 7.285566 AGGCATCATGATGTTAGACAAAGTAT 58.714 34.615 31.09 5.33 40.80 2.12
4410 4639 3.435671 GGAACGAATAGGAGGTTTGTGTG 59.564 47.826 0.00 0.00 0.00 3.82
4447 4689 2.595536 GCTGCAATGAAACTGCGTAATG 59.404 45.455 0.00 0.00 0.00 1.90
4460 4702 5.389098 GCAATTGAAGTAAAGTGCTGCAATG 60.389 40.000 10.34 0.00 45.21 2.82
4461 4703 4.687483 GCAATTGAAGTAAAGTGCTGCAAT 59.313 37.500 10.34 0.00 45.21 3.56
4464 4706 2.658325 CGCAATTGAAGTAAAGTGCTGC 59.342 45.455 10.34 0.00 46.16 5.25
4466 4708 3.315191 ACACGCAATTGAAGTAAAGTGCT 59.685 39.130 10.34 0.00 46.16 4.40
4480 4722 5.333299 TGGTATTCTAGTACACACGCAAT 57.667 39.130 0.00 0.00 0.00 3.56
4482 4724 4.740268 CTTGGTATTCTAGTACACACGCA 58.260 43.478 0.00 0.00 0.00 5.24
4483 4725 3.550678 GCTTGGTATTCTAGTACACACGC 59.449 47.826 0.00 0.00 0.00 5.34
4484 4726 4.995124 AGCTTGGTATTCTAGTACACACG 58.005 43.478 0.00 0.00 0.00 4.49
4485 4727 6.271566 GGTAGCTTGGTATTCTAGTACACAC 58.728 44.000 0.00 0.00 0.00 3.82
4486 4728 5.361857 GGGTAGCTTGGTATTCTAGTACACA 59.638 44.000 0.00 0.00 0.00 3.72
4487 4729 5.221402 GGGGTAGCTTGGTATTCTAGTACAC 60.221 48.000 0.00 0.00 0.00 2.90
4488 4730 4.897670 GGGGTAGCTTGGTATTCTAGTACA 59.102 45.833 0.00 0.00 0.00 2.90
4489 4731 4.897670 TGGGGTAGCTTGGTATTCTAGTAC 59.102 45.833 0.00 0.00 0.00 2.73
4494 4736 3.117888 CACATGGGGTAGCTTGGTATTCT 60.118 47.826 0.00 0.00 0.00 2.40
4496 4738 2.849943 TCACATGGGGTAGCTTGGTATT 59.150 45.455 0.00 0.00 0.00 1.89
4497 4739 2.487775 TCACATGGGGTAGCTTGGTAT 58.512 47.619 0.00 0.00 0.00 2.73
4502 4744 5.387113 TTGATATTCACATGGGGTAGCTT 57.613 39.130 0.00 0.00 0.00 3.74
4507 4749 6.770286 AGAGTATTGATATTCACATGGGGT 57.230 37.500 0.00 0.00 0.00 4.95
4533 4779 8.067751 TGCATCTAACTATCTGACTTGTACTT 57.932 34.615 0.00 0.00 0.00 2.24
4559 4805 7.363793 GGAAATGTACTGGCAGGAAATAAATGT 60.364 37.037 20.34 0.00 0.00 2.71
4608 4854 2.486982 ACATGCATGAGAACAGAGCAAC 59.513 45.455 32.75 0.00 41.62 4.17
4638 4884 5.105106 TCAAGCTGAAATGGAATGCATTCAT 60.105 36.000 34.08 23.71 38.53 2.57
4663 4909 3.411114 ATGCCCCTCCACATGCTCG 62.411 63.158 0.00 0.00 0.00 5.03
4694 4940 0.253044 CCATGTGGGTCTGTACCTGG 59.747 60.000 0.00 0.00 45.95 4.45
4897 5143 4.074970 GTCTTTCATGAGTGGGTTGTGAT 58.925 43.478 0.00 0.00 0.00 3.06
4931 5177 3.306294 CCTCACACAAGCTGTAGATGTCA 60.306 47.826 0.00 0.00 0.00 3.58
4944 5190 1.227943 GCTGCCACTCCTCACACAA 60.228 57.895 0.00 0.00 0.00 3.33
4949 5195 4.025858 GCCAGCTGCCACTCCTCA 62.026 66.667 8.66 0.00 0.00 3.86
5192 5438 2.593148 TTCGCCCGCTTTTCTGCA 60.593 55.556 0.00 0.00 0.00 4.41
5198 5444 3.901797 CTCCACCTTCGCCCGCTTT 62.902 63.158 0.00 0.00 0.00 3.51
5234 5480 1.399504 GCTTGCTCTTCTCGTCGTCG 61.400 60.000 0.00 0.00 38.55 5.12
5306 5552 1.674651 GAAGACGTTGGGGAAGCCC 60.675 63.158 0.00 0.00 44.51 5.19
5440 5686 1.376424 AGTGACCAGAGGCAATGCG 60.376 57.895 0.00 0.00 0.00 4.73
5696 6571 4.574674 TCATTTATATAGCCCTGGCAGG 57.425 45.455 27.04 27.04 44.88 4.85
5712 6587 4.524328 CACAGGAAACCTTAGGCTTCATTT 59.476 41.667 15.27 0.00 0.00 2.32
5717 6592 2.441750 TGTCACAGGAAACCTTAGGCTT 59.558 45.455 0.00 0.00 0.00 4.35
5735 6610 7.850982 CCGTCACTTTGCTTATATAATGTTGTC 59.149 37.037 0.00 0.00 0.00 3.18
5743 6618 5.601583 TGTCCCGTCACTTTGCTTATATA 57.398 39.130 0.00 0.00 0.00 0.86
5759 6639 3.004171 TGGATTGTACGAAATTGTCCCG 58.996 45.455 0.00 0.00 0.00 5.14
5760 6640 3.181500 GCTGGATTGTACGAAATTGTCCC 60.181 47.826 0.00 0.00 0.00 4.46
5816 6696 8.428852 TGATCATATGAATAAGAGGGTTCGAAA 58.571 33.333 9.99 0.00 0.00 3.46
5817 6697 7.962441 TGATCATATGAATAAGAGGGTTCGAA 58.038 34.615 9.99 0.00 0.00 3.71
5845 6725 9.868277 TGCTTTTATTTCTTCTGTTTCTTTTGA 57.132 25.926 0.00 0.00 0.00 2.69
5890 6775 3.087781 GAGAGCCTCAAAATTCCAGCTT 58.912 45.455 0.00 0.00 0.00 3.74
5892 6777 1.747924 GGAGAGCCTCAAAATTCCAGC 59.252 52.381 0.00 0.00 31.08 4.85
5995 6881 8.204836 AGGTACGATATTCTACAAGAAATGCTT 58.795 33.333 0.00 0.00 37.82 3.91
5996 6882 7.727181 AGGTACGATATTCTACAAGAAATGCT 58.273 34.615 0.00 0.00 37.82 3.79
6052 6938 6.554334 TGCATGTTGAAGTCCTAAGTAAAC 57.446 37.500 0.00 0.00 0.00 2.01
6168 7054 4.183865 GCTTTATGGCACTTGAATTTCCC 58.816 43.478 0.00 0.00 0.00 3.97
6327 7352 2.091102 CTGGTGGTGGGCTGCTTTTG 62.091 60.000 0.00 0.00 0.00 2.44
6347 7372 3.618690 AAGCTCTAGACAATGGTCCAC 57.381 47.619 0.00 0.00 45.48 4.02
6352 7377 3.373439 GCACAGAAAGCTCTAGACAATGG 59.627 47.826 0.00 0.00 0.00 3.16
6353 7378 4.252073 AGCACAGAAAGCTCTAGACAATG 58.748 43.478 0.00 0.00 38.01 2.82
6361 7386 3.181456 ACTGAAGAAGCACAGAAAGCTCT 60.181 43.478 0.00 0.00 42.53 4.09
6373 7398 2.615912 GCATGGATGGTACTGAAGAAGC 59.384 50.000 0.00 0.00 0.00 3.86
6378 7403 4.574674 AGAAAGCATGGATGGTACTGAA 57.425 40.909 0.00 0.00 37.57 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.