Multiple sequence alignment - TraesCS5B01G330300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G330300 chr5B 100.000 6074 0 0 299 6372 514684327 514678254 0.000000e+00 11217.0
1 TraesCS5B01G330300 chr5B 100.000 396 0 0 6720 7115 514677906 514677511 0.000000e+00 732.0
2 TraesCS5B01G330300 chr5B 95.968 124 4 1 2045 2167 397517153 397517276 4.350000e-47 200.0
3 TraesCS5B01G330300 chr5B 95.868 121 5 0 2047 2167 79817996 79817876 5.630000e-46 196.0
4 TraesCS5B01G330300 chr5B 100.000 99 0 0 1 99 514684625 514684527 4.380000e-42 183.0
5 TraesCS5B01G330300 chr5B 86.139 101 12 1 1739 1839 375174166 375174068 2.710000e-19 108.0
6 TraesCS5B01G330300 chr5B 92.453 53 3 1 1794 1846 643735493 643735544 2.750000e-09 75.0
7 TraesCS5B01G330300 chr5A 89.911 3499 206 48 2919 6369 539507483 539504084 0.000000e+00 4370.0
8 TraesCS5B01G330300 chr5A 89.177 1506 121 18 299 1791 539510022 539508546 0.000000e+00 1840.0
9 TraesCS5B01G330300 chr5A 91.206 398 28 5 6720 7115 539503708 539503316 1.050000e-147 534.0
10 TraesCS5B01G330300 chr5A 86.562 320 36 4 2591 2905 539507783 539507466 5.280000e-91 346.0
11 TraesCS5B01G330300 chr5A 88.686 274 23 5 2166 2437 539508212 539507945 1.910000e-85 327.0
12 TraesCS5B01G330300 chr5A 89.238 223 21 3 1832 2052 539508451 539508230 7.030000e-70 276.0
13 TraesCS5B01G330300 chr5A 90.909 99 8 1 1 99 539510160 539510063 1.610000e-26 132.0
14 TraesCS5B01G330300 chr5A 97.674 43 1 0 1799 1841 447372105 447372063 2.750000e-09 75.0
15 TraesCS5B01G330300 chr5A 89.286 56 4 1 1742 1797 5695991 5695938 1.280000e-07 69.4
16 TraesCS5B01G330300 chr5D 95.498 1666 55 6 4705 6370 425466989 425465344 0.000000e+00 2643.0
17 TraesCS5B01G330300 chr5D 94.964 1251 44 2 3361 4596 425468237 425466991 0.000000e+00 1943.0
18 TraesCS5B01G330300 chr5D 89.267 1556 104 30 314 1846 425471841 425470326 0.000000e+00 1890.0
19 TraesCS5B01G330300 chr5D 90.203 296 24 4 3068 3361 425469352 425469060 1.450000e-101 381.0
20 TraesCS5B01G330300 chr5D 90.000 300 21 4 6822 7115 425465066 425464770 5.210000e-101 379.0
21 TraesCS5B01G330300 chr5D 87.081 209 21 2 1844 2052 425470245 425470043 1.540000e-56 231.0
22 TraesCS5B01G330300 chr5D 91.954 87 4 3 2445 2528 551403902 551403988 1.250000e-22 119.0
23 TraesCS5B01G330300 chr5D 93.651 63 4 0 2920 2982 425469407 425469345 2.110000e-15 95.3
24 TraesCS5B01G330300 chr5D 97.561 41 1 0 1799 1839 458874246 458874286 3.560000e-08 71.3
25 TraesCS5B01G330300 chr4A 95.276 127 6 0 2046 2172 590608030 590608156 1.210000e-47 202.0
26 TraesCS5B01G330300 chr6B 96.667 120 4 0 2048 2167 43070944 43070825 4.350000e-47 200.0
27 TraesCS5B01G330300 chr6B 95.902 122 5 0 2046 2167 267021895 267021774 1.570000e-46 198.0
28 TraesCS5B01G330300 chr6B 97.391 115 3 0 2050 2164 130306045 130306159 5.630000e-46 196.0
29 TraesCS5B01G330300 chr6B 88.421 95 8 3 2437 2528 713833458 713833552 2.100000e-20 111.0
30 TraesCS5B01G330300 chr6B 88.421 95 8 3 2437 2528 713937497 713937591 2.100000e-20 111.0
31 TraesCS5B01G330300 chr6B 88.421 95 6 5 2442 2532 609385995 609386088 7.550000e-20 110.0
32 TraesCS5B01G330300 chr4D 95.868 121 5 0 2050 2170 234179259 234179139 5.630000e-46 196.0
33 TraesCS5B01G330300 chr4D 100.000 36 0 0 6929 6964 123493971 123493936 4.610000e-07 67.6
34 TraesCS5B01G330300 chr4D 100.000 36 0 0 6929 6964 450986679 450986714 4.610000e-07 67.6
35 TraesCS5B01G330300 chr7B 95.082 122 6 0 2043 2164 109935613 109935734 7.280000e-45 193.0
36 TraesCS5B01G330300 chr4B 91.971 137 10 1 2031 2167 108500825 108500690 2.620000e-44 191.0
37 TraesCS5B01G330300 chr4B 85.714 105 11 4 2429 2530 196388400 196388297 2.710000e-19 108.0
38 TraesCS5B01G330300 chr4B 100.000 36 0 0 6929 6964 209129180 209129215 4.610000e-07 67.6
39 TraesCS5B01G330300 chr4B 100.000 36 0 0 6929 6964 209278243 209278278 4.610000e-07 67.6
40 TraesCS5B01G330300 chr3D 88.889 108 6 6 2425 2528 609944952 609945057 2.080000e-25 128.0
41 TraesCS5B01G330300 chr3D 90.909 88 5 3 2444 2528 497908041 497907954 1.620000e-21 115.0
42 TraesCS5B01G330300 chr3D 100.000 36 0 0 6929 6964 308531198 308531163 4.610000e-07 67.6
43 TraesCS5B01G330300 chr6A 91.765 85 4 3 2447 2528 581267274 581267190 1.620000e-21 115.0
44 TraesCS5B01G330300 chr6A 93.617 47 2 1 1800 1846 504139638 504139683 1.280000e-07 69.4
45 TraesCS5B01G330300 chr6A 89.286 56 4 1 1742 1797 551840517 551840464 1.280000e-07 69.4
46 TraesCS5B01G330300 chr3B 90.909 88 5 3 2445 2529 11069997 11070084 1.620000e-21 115.0
47 TraesCS5B01G330300 chr3B 95.556 45 2 0 1798 1842 526282365 526282321 9.900000e-09 73.1
48 TraesCS5B01G330300 chr2B 83.962 106 9 6 1740 1839 1835017 1835120 2.110000e-15 95.3
49 TraesCS5B01G330300 chr2B 93.333 60 2 1 1738 1797 193392270 193392213 3.540000e-13 87.9
50 TraesCS5B01G330300 chr2D 92.063 63 3 1 1738 1800 135602753 135602693 3.540000e-13 87.9
51 TraesCS5B01G330300 chr2D 97.619 42 1 0 1798 1839 135602708 135602749 9.900000e-09 73.1
52 TraesCS5B01G330300 chr2A 92.593 54 2 2 1799 1852 623542321 623542372 7.650000e-10 76.8
53 TraesCS5B01G330300 chr1B 89.655 58 2 3 1742 1797 651104622 651104677 3.560000e-08 71.3
54 TraesCS5B01G330300 chr1A 89.286 56 4 1 1742 1797 146184625 146184678 1.280000e-07 69.4
55 TraesCS5B01G330300 chr1A 89.286 56 4 1 1742 1797 478362861 478362914 1.280000e-07 69.4
56 TraesCS5B01G330300 chr7D 100.000 36 0 0 6929 6964 381891420 381891455 4.610000e-07 67.6
57 TraesCS5B01G330300 chr7D 100.000 36 0 0 6929 6964 635629690 635629725 4.610000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G330300 chr5B 514677511 514684625 7114 True 4044.000000 11217 100.000000 1 7115 3 chr5B.!!$R3 7114
1 TraesCS5B01G330300 chr5A 539503316 539510160 6844 True 1117.857143 4370 89.384143 1 7115 7 chr5A.!!$R3 7114
2 TraesCS5B01G330300 chr5D 425464770 425471841 7071 True 1080.328571 2643 91.523429 314 7115 7 chr5D.!!$R1 6801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 601 1.205820 GCCAAACTTACGCACGGTC 59.794 57.895 0.00 0.00 0.00 4.79 F
1371 1390 0.321653 AGTGCTTACCAAGAAGGCCG 60.322 55.000 0.00 0.00 43.14 6.13 F
2154 2320 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14 F
2163 2329 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
3717 4811 0.030235 GCGACAACCCTGAAACCAAC 59.970 55.000 0.00 0.00 0.00 3.77 F
3733 4827 0.383949 CAACGGAAACACCTTGGTGG 59.616 55.000 21.98 7.87 42.93 4.61 F
4285 5396 0.394192 CAGAGCTGAGGGTGTTGTCA 59.606 55.000 0.00 0.00 0.00 3.58 F
5961 7110 0.321122 GTCACAGGAGCAACTCTGGG 60.321 60.000 0.00 0.00 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2301 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30 R
2815 3081 1.010462 GGTTGTTCCACGTTCGCAC 60.010 57.895 0.00 0.00 35.97 5.34 R
3651 4745 0.250234 CTGGATTTGGAGCCGTGAGA 59.750 55.000 0.00 0.00 32.65 3.27 R
4064 5175 0.310854 GTCCTGCAAAAGACCCAACG 59.689 55.000 0.00 0.00 0.00 4.10 R
4619 5745 1.132834 TGAATGTGCATAAGCCAAGCG 59.867 47.619 0.00 0.00 41.13 4.68 R
5355 6504 1.301716 AGCACGGTAGCACCTGTTG 60.302 57.895 4.21 0.89 35.66 3.33 R
6015 7164 0.239347 CGGCAACAGCTTTGAAGAGG 59.761 55.000 11.34 0.00 0.00 3.69 R
7096 8422 1.144057 GCCTCCGTCGACCATTCAT 59.856 57.895 10.58 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.511768 GCGTAGGGAGAGGTGACAC 59.488 63.158 0.00 0.00 0.00 3.67
496 497 5.707298 TGCCATGTCTTTTCTTTCTAGAAGG 59.293 40.000 8.26 8.26 41.25 3.46
549 550 8.574853 ACCCTATATATATACTGGTCCACATCA 58.425 37.037 11.18 0.00 0.00 3.07
556 557 3.131709 ACTGGTCCACATCAAGAGTTG 57.868 47.619 0.00 0.00 0.00 3.16
564 565 7.336679 TGGTCCACATCAAGAGTTGTATATTTG 59.663 37.037 0.00 0.00 0.00 2.32
567 568 7.770433 TCCACATCAAGAGTTGTATATTTGGAG 59.230 37.037 0.00 0.00 0.00 3.86
600 601 1.205820 GCCAAACTTACGCACGGTC 59.794 57.895 0.00 0.00 0.00 4.79
669 678 9.193806 AGATCCAAATTAGAATGCAATAGTTGT 57.806 29.630 0.00 0.00 0.00 3.32
696 705 4.761235 TCTTACTCTGTCACTTACCACG 57.239 45.455 0.00 0.00 0.00 4.94
699 708 1.612463 ACTCTGTCACTTACCACGGTC 59.388 52.381 0.00 0.00 0.00 4.79
747 756 3.124806 ACGGTATCGCTACGTGATAGATG 59.875 47.826 0.00 0.00 39.64 2.90
756 765 7.907194 TCGCTACGTGATAGATGATCTAATAC 58.093 38.462 6.22 7.64 35.37 1.89
800 809 5.731957 AATTATTTTACACCGGGTTTGCT 57.268 34.783 6.32 0.00 0.00 3.91
846 855 9.098355 TGTATTCTAAATATGTTGACTGCTCAC 57.902 33.333 0.00 0.00 0.00 3.51
1028 1037 0.951040 GAGTGGCCGGAACAGTTCAG 60.951 60.000 15.36 10.89 0.00 3.02
1032 1041 0.951040 GGCCGGAACAGTTCAGTGAG 60.951 60.000 15.36 0.28 0.00 3.51
1058 1067 0.609131 AATTGGCTTGTCCTCGGGTG 60.609 55.000 0.00 0.00 35.26 4.61
1060 1069 1.990160 TTGGCTTGTCCTCGGGTGTT 61.990 55.000 0.00 0.00 35.26 3.32
1077 1086 1.070786 TTCAGGCGGAGACAACCAC 59.929 57.895 0.00 0.00 39.87 4.16
1088 1097 1.084289 GACAACCACGTTATCCAGCC 58.916 55.000 0.00 0.00 0.00 4.85
1090 1099 1.086696 CAACCACGTTATCCAGCCTG 58.913 55.000 0.00 0.00 0.00 4.85
1260 1275 4.051922 CCGTAGCACAGATCCAAATACTC 58.948 47.826 0.00 0.00 0.00 2.59
1305 1324 5.748152 TGCAAATCTTTCTTCTTGAAAACGG 59.252 36.000 0.00 0.00 43.25 4.44
1371 1390 0.321653 AGTGCTTACCAAGAAGGCCG 60.322 55.000 0.00 0.00 43.14 6.13
1481 1500 1.006758 ACTCGGGGAAGGTAGACATCA 59.993 52.381 0.00 0.00 0.00 3.07
1514 1533 3.487574 CGGTGAACTAGATGAGATTTCGC 59.512 47.826 0.00 0.00 0.00 4.70
1515 1534 4.688021 GGTGAACTAGATGAGATTTCGCT 58.312 43.478 0.00 0.00 0.00 4.93
1517 1536 5.688176 GGTGAACTAGATGAGATTTCGCTAC 59.312 44.000 0.00 0.00 0.00 3.58
1525 1544 4.406648 TGAGATTTCGCTACATGGTCAT 57.593 40.909 0.00 0.00 0.00 3.06
1537 1556 6.347160 CGCTACATGGTCATGATATGAAGTTG 60.347 42.308 22.33 9.93 41.69 3.16
1550 1571 6.430925 TGATATGAAGTTGTAAAAGCTGTGCT 59.569 34.615 0.00 0.00 42.56 4.40
1555 1576 5.828299 AGTTGTAAAAGCTGTGCTGTTAA 57.172 34.783 4.02 0.00 39.65 2.01
1666 1695 4.384547 CACGTCGAATTTGTGAGTCATACA 59.615 41.667 0.00 0.00 35.66 2.29
1667 1696 4.384846 ACGTCGAATTTGTGAGTCATACAC 59.615 41.667 0.00 0.00 38.55 2.90
1668 1697 4.621460 CGTCGAATTTGTGAGTCATACACT 59.379 41.667 0.00 0.00 38.81 3.55
1669 1698 5.118664 CGTCGAATTTGTGAGTCATACACTT 59.881 40.000 0.00 0.00 38.81 3.16
1670 1699 6.346598 CGTCGAATTTGTGAGTCATACACTTT 60.347 38.462 0.00 0.00 38.81 2.66
1671 1700 7.352739 GTCGAATTTGTGAGTCATACACTTTT 58.647 34.615 0.00 0.00 38.81 2.27
1672 1701 7.855904 GTCGAATTTGTGAGTCATACACTTTTT 59.144 33.333 0.00 0.00 38.81 1.94
1690 1719 2.871096 TTTTTGCGGGGAGTCATACT 57.129 45.000 0.00 0.00 0.00 2.12
1691 1720 2.871096 TTTTGCGGGGAGTCATACTT 57.129 45.000 0.00 0.00 0.00 2.24
1692 1721 2.871096 TTTGCGGGGAGTCATACTTT 57.129 45.000 0.00 0.00 0.00 2.66
1722 1751 7.016153 TGAATACTTGAGTCATACTTTGGGT 57.984 36.000 0.00 0.00 0.00 4.51
1723 1752 8.141298 TGAATACTTGAGTCATACTTTGGGTA 57.859 34.615 0.00 0.00 34.62 3.69
1724 1753 8.598916 TGAATACTTGAGTCATACTTTGGGTAA 58.401 33.333 0.00 0.00 33.74 2.85
1725 1754 9.444600 GAATACTTGAGTCATACTTTGGGTAAA 57.555 33.333 0.00 0.00 33.74 2.01
1754 1783 9.925545 TGTAGTAACAATATACTCCCTCTGTAA 57.074 33.333 0.00 0.00 37.34 2.41
1857 2023 9.317827 AGGGAGTACTTTGTAACTGAAATAGTA 57.682 33.333 0.00 0.00 39.18 1.82
1875 2041 2.158755 AGTAATACCAGGCATGCCAGAC 60.159 50.000 37.18 22.15 38.92 3.51
1905 2071 5.527582 GCCATAAACCACGTCTATGAAAGAT 59.472 40.000 0.00 0.00 36.36 2.40
1937 2103 5.084519 AGGGTAGTCTGTCAATAACTGTCA 58.915 41.667 0.00 0.00 0.00 3.58
1951 2117 8.387354 TCAATAACTGTCAACATAAGTATTGCG 58.613 33.333 0.00 0.00 0.00 4.85
1952 2118 4.600012 ACTGTCAACATAAGTATTGCGC 57.400 40.909 0.00 0.00 0.00 6.09
1969 2135 1.129811 GCGCAGGTTATTAGCAAACGT 59.870 47.619 0.30 0.00 0.00 3.99
1974 2140 5.615106 CGCAGGTTATTAGCAAACGTTTGTA 60.615 40.000 34.39 23.98 40.24 2.41
1990 2156 5.759273 ACGTTTGTAACTGCCAACTATTACA 59.241 36.000 0.00 0.00 36.11 2.41
1998 2164 5.804639 ACTGCCAACTATTACAAGTCATCA 58.195 37.500 0.00 0.00 0.00 3.07
2002 2168 7.112122 TGCCAACTATTACAAGTCATCATCTT 58.888 34.615 0.00 0.00 0.00 2.40
2022 2188 6.097915 TCTTTGATGGAGTTCTTACGAGTT 57.902 37.500 0.00 0.00 0.00 3.01
2027 2193 5.708697 TGATGGAGTTCTTACGAGTTGTCTA 59.291 40.000 0.00 0.00 0.00 2.59
2029 2195 4.823442 TGGAGTTCTTACGAGTTGTCTACA 59.177 41.667 0.00 0.00 0.00 2.74
2030 2196 5.048921 TGGAGTTCTTACGAGTTGTCTACAG 60.049 44.000 0.00 0.00 0.00 2.74
2042 2208 3.067684 TGTCTACAGTGACCGATGAGA 57.932 47.619 0.00 0.00 36.21 3.27
2043 2209 3.010420 TGTCTACAGTGACCGATGAGAG 58.990 50.000 0.00 0.00 36.21 3.20
2052 2218 4.989168 AGTGACCGATGAGAGTTTTTGTAC 59.011 41.667 0.00 0.00 0.00 2.90
2054 2220 5.118817 GTGACCGATGAGAGTTTTTGTACTC 59.881 44.000 0.00 0.00 43.90 2.59
2055 2221 4.566987 ACCGATGAGAGTTTTTGTACTCC 58.433 43.478 0.00 0.00 44.50 3.85
2056 2222 3.933332 CCGATGAGAGTTTTTGTACTCCC 59.067 47.826 0.00 0.00 44.50 4.30
2057 2223 4.322801 CCGATGAGAGTTTTTGTACTCCCT 60.323 45.833 0.00 0.00 44.50 4.20
2059 2225 5.336849 CGATGAGAGTTTTTGTACTCCCTCT 60.337 44.000 0.00 0.00 44.50 3.69
2060 2226 5.215252 TGAGAGTTTTTGTACTCCCTCTG 57.785 43.478 0.00 0.00 44.50 3.35
2062 2228 5.216614 AGAGTTTTTGTACTCCCTCTGTC 57.783 43.478 0.00 0.00 44.50 3.51
2063 2229 4.040584 AGAGTTTTTGTACTCCCTCTGTCC 59.959 45.833 0.00 0.00 44.50 4.02
2064 2230 3.064931 GTTTTTGTACTCCCTCTGTCCG 58.935 50.000 0.00 0.00 0.00 4.79
2065 2231 2.297698 TTTGTACTCCCTCTGTCCGA 57.702 50.000 0.00 0.00 0.00 4.55
2066 2232 2.297698 TTGTACTCCCTCTGTCCGAA 57.702 50.000 0.00 0.00 0.00 4.30
2067 2233 2.297698 TGTACTCCCTCTGTCCGAAA 57.702 50.000 0.00 0.00 0.00 3.46
2068 2234 2.600790 TGTACTCCCTCTGTCCGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
2069 2235 3.170717 TGTACTCCCTCTGTCCGAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
2070 2236 4.346730 TGTACTCCCTCTGTCCGAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2071 2237 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2072 2238 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2073 2239 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2074 2240 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2075 2241 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2076 2242 4.041198 TCCCTCTGTCCGAAAATACTTGTT 59.959 41.667 0.00 0.00 0.00 2.83
2077 2243 4.154195 CCCTCTGTCCGAAAATACTTGTTG 59.846 45.833 0.00 0.00 0.00 3.33
2078 2244 4.154195 CCTCTGTCCGAAAATACTTGTTGG 59.846 45.833 0.00 0.00 0.00 3.77
2079 2245 4.963373 TCTGTCCGAAAATACTTGTTGGA 58.037 39.130 0.00 0.00 0.00 3.53
2080 2246 4.994852 TCTGTCCGAAAATACTTGTTGGAG 59.005 41.667 0.00 0.00 0.00 3.86
2081 2247 4.963373 TGTCCGAAAATACTTGTTGGAGA 58.037 39.130 0.00 0.00 0.00 3.71
2082 2248 5.369833 TGTCCGAAAATACTTGTTGGAGAA 58.630 37.500 0.00 0.00 0.00 2.87
2083 2249 5.823570 TGTCCGAAAATACTTGTTGGAGAAA 59.176 36.000 0.00 0.00 0.00 2.52
2084 2250 6.488683 TGTCCGAAAATACTTGTTGGAGAAAT 59.511 34.615 0.00 0.00 0.00 2.17
2085 2251 6.801862 GTCCGAAAATACTTGTTGGAGAAATG 59.198 38.462 0.00 0.00 0.00 2.32
2086 2252 5.572896 CCGAAAATACTTGTTGGAGAAATGC 59.427 40.000 0.00 0.00 0.00 3.56
2087 2253 6.148948 CGAAAATACTTGTTGGAGAAATGCA 58.851 36.000 0.00 0.00 0.00 3.96
2088 2254 6.808212 CGAAAATACTTGTTGGAGAAATGCAT 59.192 34.615 0.00 0.00 0.00 3.96
2089 2255 7.967854 CGAAAATACTTGTTGGAGAAATGCATA 59.032 33.333 0.00 0.00 0.00 3.14
2090 2256 9.638239 GAAAATACTTGTTGGAGAAATGCATAA 57.362 29.630 0.00 0.00 0.00 1.90
2091 2257 9.995003 AAAATACTTGTTGGAGAAATGCATAAA 57.005 25.926 0.00 0.00 0.00 1.40
2092 2258 9.995003 AAATACTTGTTGGAGAAATGCATAAAA 57.005 25.926 0.00 0.00 0.00 1.52
2093 2259 9.995003 AATACTTGTTGGAGAAATGCATAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
2095 2261 8.314143 ACTTGTTGGAGAAATGCATAAAAATG 57.686 30.769 0.00 0.00 0.00 2.32
2096 2262 8.149647 ACTTGTTGGAGAAATGCATAAAAATGA 58.850 29.630 0.00 0.00 0.00 2.57
2097 2263 8.899427 TTGTTGGAGAAATGCATAAAAATGAA 57.101 26.923 0.00 0.00 0.00 2.57
2098 2264 9.504708 TTGTTGGAGAAATGCATAAAAATGAAT 57.495 25.926 0.00 0.00 0.00 2.57
2099 2265 8.937884 TGTTGGAGAAATGCATAAAAATGAATG 58.062 29.630 0.00 0.00 0.00 2.67
2100 2266 8.938906 GTTGGAGAAATGCATAAAAATGAATGT 58.061 29.630 0.00 0.00 0.00 2.71
2139 2305 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
2140 2306 5.420421 ACATCTAGATACATCCATTCCTCCG 59.580 44.000 4.54 0.00 0.00 4.63
2141 2307 5.256806 TCTAGATACATCCATTCCTCCGA 57.743 43.478 0.00 0.00 0.00 4.55
2142 2308 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
2143 2309 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
2144 2310 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
2145 2311 0.747255 ACATCCATTCCTCCGACGAG 59.253 55.000 0.00 0.00 35.72 4.18
2146 2312 0.747255 CATCCATTCCTCCGACGAGT 59.253 55.000 0.00 0.00 33.93 4.18
2147 2313 1.954382 CATCCATTCCTCCGACGAGTA 59.046 52.381 0.00 0.00 33.93 2.59
2148 2314 2.359981 TCCATTCCTCCGACGAGTAT 57.640 50.000 0.00 0.00 33.93 2.12
2149 2315 2.662866 TCCATTCCTCCGACGAGTATT 58.337 47.619 0.00 0.00 33.93 1.89
2150 2316 3.028850 TCCATTCCTCCGACGAGTATTT 58.971 45.455 0.00 0.00 33.93 1.40
2151 2317 3.067742 TCCATTCCTCCGACGAGTATTTC 59.932 47.826 0.00 0.00 33.93 2.17
2152 2318 3.381949 CATTCCTCCGACGAGTATTTCC 58.618 50.000 0.00 0.00 33.93 3.13
2153 2319 1.019673 TCCTCCGACGAGTATTTCCG 58.980 55.000 0.00 0.00 33.93 4.30
2154 2320 0.030369 CCTCCGACGAGTATTTCCGG 59.970 60.000 0.00 0.00 41.36 5.14
2155 2321 1.019673 CTCCGACGAGTATTTCCGGA 58.980 55.000 0.00 0.00 45.74 5.14
2156 2322 0.734889 TCCGACGAGTATTTCCGGAC 59.265 55.000 1.83 0.00 43.47 4.79
2157 2323 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
2158 2324 0.590732 CGACGAGTATTTCCGGACGG 60.591 60.000 1.83 3.96 0.00 4.79
2159 2325 0.734889 GACGAGTATTTCCGGACGGA 59.265 55.000 1.83 9.76 43.52 4.69
2160 2326 0.737219 ACGAGTATTTCCGGACGGAG 59.263 55.000 13.64 3.15 46.06 4.63
2161 2327 0.030369 CGAGTATTTCCGGACGGAGG 59.970 60.000 13.64 0.00 46.06 4.30
2162 2328 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
2163 2329 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2164 2330 0.826062 GTATTTCCGGACGGAGGGAA 59.174 55.000 13.64 6.20 46.06 3.97
2173 2339 1.962100 GGACGGAGGGAATAGTAGTGG 59.038 57.143 0.00 0.00 0.00 4.00
2176 2342 3.498334 ACGGAGGGAATAGTAGTGGATC 58.502 50.000 0.00 0.00 0.00 3.36
2192 2358 8.470805 AGTAGTGGATCTTTACTCATAACACTG 58.529 37.037 0.00 0.00 37.26 3.66
2313 2480 7.385205 CGTACCATGTCCTATGATTTAGGAAAG 59.615 40.741 3.01 0.00 44.55 2.62
2440 2610 7.596995 GTGTTAGGAGATCTATTATGAGCACAC 59.403 40.741 0.00 0.00 0.00 3.82
2448 2618 9.703892 AGATCTATTATGAGCACACAGAATTAC 57.296 33.333 0.00 0.00 34.34 1.89
2449 2619 8.839310 ATCTATTATGAGCACACAGAATTACC 57.161 34.615 0.00 0.00 34.34 2.85
2450 2620 7.217200 TCTATTATGAGCACACAGAATTACCC 58.783 38.462 0.00 0.00 34.34 3.69
2451 2621 2.489938 TGAGCACACAGAATTACCCC 57.510 50.000 0.00 0.00 0.00 4.95
2452 2622 1.985159 TGAGCACACAGAATTACCCCT 59.015 47.619 0.00 0.00 0.00 4.79
2453 2623 3.178046 TGAGCACACAGAATTACCCCTA 58.822 45.455 0.00 0.00 0.00 3.53
2454 2624 3.780294 TGAGCACACAGAATTACCCCTAT 59.220 43.478 0.00 0.00 0.00 2.57
2455 2625 4.130118 GAGCACACAGAATTACCCCTATG 58.870 47.826 0.00 0.00 0.00 2.23
2456 2626 3.523564 AGCACACAGAATTACCCCTATGT 59.476 43.478 0.00 0.00 0.00 2.29
2457 2627 4.719773 AGCACACAGAATTACCCCTATGTA 59.280 41.667 0.00 0.00 0.00 2.29
2458 2628 5.190925 AGCACACAGAATTACCCCTATGTAA 59.809 40.000 0.00 0.00 35.33 2.41
2459 2629 5.883673 GCACACAGAATTACCCCTATGTAAA 59.116 40.000 0.00 0.00 34.59 2.01
2460 2630 6.038271 GCACACAGAATTACCCCTATGTAAAG 59.962 42.308 0.00 0.00 34.59 1.85
2461 2631 7.335627 CACACAGAATTACCCCTATGTAAAGA 58.664 38.462 0.00 0.00 34.59 2.52
2462 2632 7.827236 CACACAGAATTACCCCTATGTAAAGAA 59.173 37.037 0.00 0.00 34.59 2.52
2463 2633 8.387813 ACACAGAATTACCCCTATGTAAAGAAA 58.612 33.333 0.00 0.00 34.59 2.52
2464 2634 9.408648 CACAGAATTACCCCTATGTAAAGAAAT 57.591 33.333 0.00 0.00 34.59 2.17
2473 2643 9.063615 ACCCCTATGTAAAGAAATATAAAAGCG 57.936 33.333 0.00 0.00 0.00 4.68
2474 2644 9.063615 CCCCTATGTAAAGAAATATAAAAGCGT 57.936 33.333 0.00 0.00 0.00 5.07
2523 2693 9.525826 AATGCTCTTATATTTCTTTATGGAGGG 57.474 33.333 0.00 0.00 0.00 4.30
2524 2694 8.275187 TGCTCTTATATTTCTTTATGGAGGGA 57.725 34.615 0.00 0.00 0.00 4.20
2525 2695 8.378565 TGCTCTTATATTTCTTTATGGAGGGAG 58.621 37.037 0.00 0.00 0.00 4.30
2526 2696 8.379331 GCTCTTATATTTCTTTATGGAGGGAGT 58.621 37.037 0.00 0.00 0.00 3.85
2576 2746 9.588096 TCTATGTTAGGAGATCTATTAACAGCA 57.412 33.333 24.35 17.66 38.82 4.41
2577 2747 9.853555 CTATGTTAGGAGATCTATTAACAGCAG 57.146 37.037 24.35 20.75 38.82 4.24
2582 2752 7.430760 AGGAGATCTATTAACAGCAGAAAGT 57.569 36.000 0.00 0.00 0.00 2.66
2593 2855 9.950496 ATTAACAGCAGAAAGTATCATATAGGG 57.050 33.333 0.00 0.00 0.00 3.53
2598 2860 9.950496 CAGCAGAAAGTATCATATAGGGTTATT 57.050 33.333 0.00 0.00 0.00 1.40
2723 2987 8.587952 AACAAATTACATTCTAACAAAGTGGC 57.412 30.769 0.00 0.00 0.00 5.01
2743 3007 3.306225 GGCACAAAATTTGAGCATCCTCA 60.306 43.478 24.68 0.00 46.98 3.86
2754 3018 3.072330 TGAGCATCCTCAGGTACACAAAA 59.928 43.478 0.00 0.00 42.98 2.44
2782 3046 4.204012 TGTCTAGAAACACAAACCAAGGG 58.796 43.478 0.00 0.00 0.00 3.95
2791 3057 8.000127 AGAAACACAAACCAAGGGTTAGTATTA 59.000 33.333 0.32 0.00 46.20 0.98
2806 3072 8.316946 GGGTTAGTATTATGTTAGGGGTATGAC 58.683 40.741 0.00 0.00 0.00 3.06
2815 3081 1.153509 GGGGTATGACGTTCGTGGG 60.154 63.158 1.74 0.00 0.00 4.61
2829 3095 2.589442 TGGGTGCGAACGTGGAAC 60.589 61.111 0.00 0.00 0.00 3.62
2837 3103 1.292061 CGAACGTGGAACAACCTTGA 58.708 50.000 0.00 0.00 44.16 3.02
2869 3135 4.592485 ATCCACTAGAGCGAAGGTATTG 57.408 45.455 0.00 0.00 39.88 1.90
2877 3143 2.874701 GAGCGAAGGTATTGCATGACAT 59.125 45.455 0.00 0.00 39.88 3.06
2887 3153 8.706492 AGGTATTGCATGACATATTTTGTTTG 57.294 30.769 0.00 0.00 39.18 2.93
2888 3154 8.530311 AGGTATTGCATGACATATTTTGTTTGA 58.470 29.630 0.00 0.00 39.18 2.69
2889 3155 8.810427 GGTATTGCATGACATATTTTGTTTGAG 58.190 33.333 0.00 0.00 39.18 3.02
2890 3156 9.357652 GTATTGCATGACATATTTTGTTTGAGT 57.642 29.630 0.00 0.00 39.18 3.41
2891 3157 8.836268 ATTGCATGACATATTTTGTTTGAGTT 57.164 26.923 0.00 0.00 39.18 3.01
2892 3158 7.872163 TGCATGACATATTTTGTTTGAGTTC 57.128 32.000 0.00 0.00 39.18 3.01
2893 3159 7.660112 TGCATGACATATTTTGTTTGAGTTCT 58.340 30.769 0.00 0.00 39.18 3.01
2894 3160 8.791675 TGCATGACATATTTTGTTTGAGTTCTA 58.208 29.630 0.00 0.00 39.18 2.10
2895 3161 9.624697 GCATGACATATTTTGTTTGAGTTCTAA 57.375 29.630 0.00 0.00 39.18 2.10
2976 3242 3.128349 GCTCAGGTCGTAGTTGTGAAAA 58.872 45.455 0.00 0.00 0.00 2.29
2984 3250 5.007332 GGTCGTAGTTGTGAAAACTGATGTT 59.993 40.000 0.00 0.00 38.16 2.71
2988 3254 6.410914 CGTAGTTGTGAAAACTGATGTTGAAC 59.589 38.462 0.00 0.00 36.39 3.18
3009 3275 2.386661 TCAGTTGATCTTCCTTCCGC 57.613 50.000 0.00 0.00 0.00 5.54
3017 3283 4.986783 TGATCTTCCTTCCGCTATCTAGA 58.013 43.478 0.00 0.00 0.00 2.43
3105 3371 5.353394 AGACAAACACAAGTAGAGGAACA 57.647 39.130 0.00 0.00 0.00 3.18
3123 3389 2.260434 CCAACACAGCTGGCATGC 59.740 61.111 19.93 9.90 0.00 4.06
3136 3402 2.054453 GCATGCCCCCTCAACCTTC 61.054 63.158 6.36 0.00 0.00 3.46
3208 3475 4.990426 TCGATGTGTGTGGCATCATATTAG 59.010 41.667 0.00 0.00 41.91 1.73
3263 3530 3.311106 CACATTGTTGTCATGTTGCCTC 58.689 45.455 0.00 0.00 32.34 4.70
3324 3595 5.299279 ACCTATTTGTTCTGTGACACCAAAG 59.701 40.000 2.45 0.00 0.00 2.77
3332 3603 4.494484 TCTGTGACACCAAAGATATCACG 58.506 43.478 5.32 0.00 42.09 4.35
3431 4525 3.935828 GAGGAATTTCAGGAAGAGAACGG 59.064 47.826 0.00 0.00 0.00 4.44
3469 4563 0.250467 ACAAGCACTCATGTCGGCTT 60.250 50.000 12.44 12.44 46.71 4.35
3474 4568 0.167470 CACTCATGTCGGCTTTGCAG 59.833 55.000 0.00 0.00 0.00 4.41
3479 4573 0.877071 ATGTCGGCTTTGCAGAACAG 59.123 50.000 0.00 0.00 34.22 3.16
3481 4575 2.256461 CGGCTTTGCAGAACAGGC 59.744 61.111 0.00 0.00 0.00 4.85
3491 4585 1.668047 GCAGAACAGGCTTTGCATCAC 60.668 52.381 0.00 0.00 36.59 3.06
3615 4709 2.359900 GGTGGAAGGCTACAAGTGATG 58.640 52.381 0.00 0.00 0.00 3.07
3651 4745 0.546267 ACACCCATGCTCCTCTCACT 60.546 55.000 0.00 0.00 0.00 3.41
3681 4775 3.887716 CTCCAAATCCAGTGATGATTCCC 59.112 47.826 0.00 0.00 31.39 3.97
3715 4809 1.890041 CGCGACAACCCTGAAACCA 60.890 57.895 0.00 0.00 0.00 3.67
3717 4811 0.030235 GCGACAACCCTGAAACCAAC 59.970 55.000 0.00 0.00 0.00 3.77
3733 4827 0.383949 CAACGGAAACACCTTGGTGG 59.616 55.000 21.98 7.87 42.93 4.61
3763 4857 1.742761 TGCTTGTGCTATGGAAGAGC 58.257 50.000 0.00 0.00 40.48 4.09
3776 4870 0.520847 GAAGAGCTGAAGGTGCTTGC 59.479 55.000 0.00 0.00 41.30 4.01
3976 5070 2.216750 GAACGCGGTACAGCCCTGTA 62.217 60.000 12.47 4.11 44.42 2.74
3996 5093 2.418368 TCCGACCTCCATCCAATTTG 57.582 50.000 0.00 0.00 0.00 2.32
4007 5104 6.271488 TCCATCCAATTTGAGTAAAGCTTG 57.729 37.500 0.00 0.00 0.00 4.01
4010 5107 7.029563 CCATCCAATTTGAGTAAAGCTTGTAC 58.970 38.462 0.00 5.26 0.00 2.90
4047 5158 5.947228 AGTCATACAGGATTTTGTGTGTG 57.053 39.130 3.45 0.00 40.03 3.82
4048 5159 5.376625 AGTCATACAGGATTTTGTGTGTGT 58.623 37.500 3.45 0.00 40.03 3.72
4049 5160 5.239306 AGTCATACAGGATTTTGTGTGTGTG 59.761 40.000 3.45 0.00 40.03 3.82
4050 5161 5.008613 GTCATACAGGATTTTGTGTGTGTGT 59.991 40.000 3.45 0.00 40.03 3.72
4051 5162 3.781079 ACAGGATTTTGTGTGTGTGTG 57.219 42.857 0.00 0.00 0.00 3.82
4052 5163 3.088532 ACAGGATTTTGTGTGTGTGTGT 58.911 40.909 0.00 0.00 0.00 3.72
4053 5164 3.119531 ACAGGATTTTGTGTGTGTGTGTG 60.120 43.478 0.00 0.00 0.00 3.82
4054 5165 3.088532 AGGATTTTGTGTGTGTGTGTGT 58.911 40.909 0.00 0.00 0.00 3.72
4055 5166 3.119531 AGGATTTTGTGTGTGTGTGTGTG 60.120 43.478 0.00 0.00 0.00 3.82
4056 5167 3.366883 GGATTTTGTGTGTGTGTGTGTGT 60.367 43.478 0.00 0.00 0.00 3.72
4057 5168 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
4058 5169 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
4059 5170 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4060 5171 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4061 5172 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4062 5173 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
4063 5174 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
4064 5175 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
4110 5221 2.046314 CAGACGTTCCCGGGCATT 60.046 61.111 18.49 0.00 38.78 3.56
4285 5396 0.394192 CAGAGCTGAGGGTGTTGTCA 59.606 55.000 0.00 0.00 0.00 3.58
4347 5458 1.272781 CAGAAGATCGCGGAGAACAC 58.727 55.000 6.13 0.00 0.00 3.32
4353 5464 1.899437 ATCGCGGAGAACACATGGGT 61.899 55.000 6.13 0.00 0.00 4.51
4525 5651 6.932901 AATGTGCATCGTTTTAACATTGAG 57.067 33.333 0.00 0.00 39.37 3.02
4597 5723 2.548920 CCGTCAAGAGTGAAAAGGAGCT 60.549 50.000 0.00 0.00 34.87 4.09
4598 5724 3.306088 CCGTCAAGAGTGAAAAGGAGCTA 60.306 47.826 0.00 0.00 34.87 3.32
4599 5725 3.923461 CGTCAAGAGTGAAAAGGAGCTAG 59.077 47.826 0.00 0.00 34.87 3.42
4619 5745 4.838904 AGTAGTAACATTTCCCACCTCC 57.161 45.455 0.00 0.00 0.00 4.30
4659 5785 6.892658 TTCACACAAACCATAAGCTACATT 57.107 33.333 0.00 0.00 0.00 2.71
4699 5836 4.453478 TGAGCTCTACATTTCTTTGCACAG 59.547 41.667 16.19 0.00 0.00 3.66
4717 5854 6.437928 TGCACAGTGAAATAATGTTGTCTTC 58.562 36.000 4.15 0.00 34.97 2.87
4719 5856 7.443879 TGCACAGTGAAATAATGTTGTCTTCTA 59.556 33.333 4.15 0.00 34.97 2.10
4899 6048 1.064505 CACATGGATCGTGAACATGGC 59.935 52.381 16.91 0.00 44.65 4.40
4918 6067 1.434622 CGCATGATGAGGCCACTGTC 61.435 60.000 5.01 2.13 0.00 3.51
4921 6070 1.639635 ATGATGAGGCCACTGTCCCC 61.640 60.000 5.01 0.00 0.00 4.81
4948 6097 0.616111 ACCATCCACTCTTCCGCTCT 60.616 55.000 0.00 0.00 0.00 4.09
5002 6151 2.279120 CTCCAGAGGCGATGCGAC 60.279 66.667 0.00 0.00 33.59 5.19
5041 6190 1.302511 CAACCCCGTTCTCACCCTG 60.303 63.158 0.00 0.00 0.00 4.45
5053 6202 1.625315 CTCACCCTGAACACCAGATCA 59.375 52.381 0.00 0.00 45.78 2.92
5084 6233 3.422796 AGTCATCTCACAACCGAGTAGT 58.577 45.455 0.00 0.00 34.46 2.73
5093 6242 7.281098 TCTCACAACCGAGTAGTAGAGAATAT 58.719 38.462 0.00 0.00 34.46 1.28
5142 6291 8.761575 TCGAAGTTCTAAACGGTTATGTAATT 57.238 30.769 0.00 0.00 36.23 1.40
5163 6312 2.249309 ACGGATCCTAAAGGTGGAGT 57.751 50.000 10.75 0.00 36.99 3.85
5224 6373 2.464865 GTAGCACATCGGATGACACTC 58.535 52.381 23.98 7.94 0.00 3.51
5355 6504 1.914764 TGACCTTCCCCGTGGGTAC 60.915 63.158 3.83 0.00 44.74 3.34
5691 6840 5.264395 CCAAACCTCTAATGGTCCTCAAAT 58.736 41.667 0.00 0.00 39.83 2.32
5692 6841 5.716703 CCAAACCTCTAATGGTCCTCAAATT 59.283 40.000 0.00 0.00 39.83 1.82
5693 6842 6.211384 CCAAACCTCTAATGGTCCTCAAATTT 59.789 38.462 0.00 0.00 39.83 1.82
5829 6978 1.737838 TTCAGGATGTCATCAACGGC 58.262 50.000 14.72 0.00 37.40 5.68
5833 6982 1.376609 GGATGTCATCAACGGCACCC 61.377 60.000 14.72 0.00 0.00 4.61
5961 7110 0.321122 GTCACAGGAGCAACTCTGGG 60.321 60.000 0.00 0.00 0.00 4.45
6113 7262 3.365820 GCTAACGTCGTTTTAGCTGCTTA 59.634 43.478 20.52 0.00 45.40 3.09
6214 7363 7.087639 GCACTGTTTATTTGCTTGTTACCATA 58.912 34.615 0.00 0.00 33.26 2.74
6786 7963 2.100197 GGGTGCCAATTAGTTTCTCCC 58.900 52.381 0.00 0.00 0.00 4.30
6787 7964 2.556559 GGGTGCCAATTAGTTTCTCCCA 60.557 50.000 0.00 0.00 33.33 4.37
6813 7990 4.682021 AGAGGAATGGACTGGGATTTTT 57.318 40.909 0.00 0.00 0.00 1.94
6814 7991 4.604156 AGAGGAATGGACTGGGATTTTTC 58.396 43.478 0.00 0.00 0.00 2.29
6815 7992 4.293368 AGAGGAATGGACTGGGATTTTTCT 59.707 41.667 0.00 0.00 0.00 2.52
6817 7994 3.448660 GGAATGGACTGGGATTTTTCTGG 59.551 47.826 0.00 0.00 0.00 3.86
6818 7995 4.344104 GAATGGACTGGGATTTTTCTGGA 58.656 43.478 0.00 0.00 0.00 3.86
6819 7996 3.439857 TGGACTGGGATTTTTCTGGAG 57.560 47.619 0.00 0.00 0.00 3.86
6820 7997 2.716424 TGGACTGGGATTTTTCTGGAGT 59.284 45.455 0.00 0.00 0.00 3.85
6825 8144 6.394345 ACTGGGATTTTTCTGGAGTCTAAT 57.606 37.500 0.00 0.00 0.00 1.73
6862 8181 7.337480 TGTGAATCATGGATTGGTAATTCTG 57.663 36.000 0.00 0.00 31.89 3.02
6871 8190 4.578105 GGATTGGTAATTCTGCTTCCTCTG 59.422 45.833 0.00 0.00 0.00 3.35
6872 8191 4.640771 TTGGTAATTCTGCTTCCTCTGT 57.359 40.909 0.00 0.00 0.00 3.41
6873 8192 3.942829 TGGTAATTCTGCTTCCTCTGTG 58.057 45.455 0.00 0.00 0.00 3.66
6883 8203 2.673523 CCTCTGTGGGGAGGCTTG 59.326 66.667 0.00 0.00 45.07 4.01
6915 8235 2.158900 TGCTAACCTCTCTAGCATTGCC 60.159 50.000 4.70 0.00 45.24 4.52
7042 8362 8.579850 AGAGAGTAAATAATGCAAAACATGGA 57.420 30.769 0.00 0.00 39.60 3.41
7096 8422 0.107643 TTCCATCAACGACACCTGCA 59.892 50.000 0.00 0.00 0.00 4.41
7100 8426 1.805943 CATCAACGACACCTGCATGAA 59.194 47.619 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.681327 GTCACCTCTCCCTACGCCA 60.681 63.158 0.00 0.00 0.00 5.69
11 12 1.006043 CCTCAGTGTCACCTCTCCCTA 59.994 57.143 0.00 0.00 0.00 3.53
26 27 4.559063 CCCTGCATCGGCCCTCAG 62.559 72.222 0.00 0.00 40.13 3.35
304 305 2.420043 CCGGAACCACACGACACT 59.580 61.111 0.00 0.00 0.00 3.55
466 467 0.109597 GAAAAGACATGGCACCAGCG 60.110 55.000 0.00 0.00 43.41 5.18
523 524 8.574853 TGATGTGGACCAGTATATATATAGGGT 58.425 37.037 19.15 19.15 32.66 4.34
564 565 9.435688 AAGTTTGGCAAACATTAATTTATCTCC 57.564 29.630 36.37 11.07 43.79 3.71
578 579 1.117234 CGTGCGTAAGTTTGGCAAAC 58.883 50.000 30.67 30.67 38.58 2.93
592 593 0.669318 TAAAGCTGGAAGACCGTGCG 60.669 55.000 0.00 0.00 40.96 5.34
600 601 3.489738 CCATCGGCATTTAAAGCTGGAAG 60.490 47.826 14.50 8.07 38.87 3.46
669 678 9.485206 GTGGTAAGTGACAGAGTAAGAAATAAA 57.515 33.333 0.00 0.00 0.00 1.40
675 684 3.504906 CCGTGGTAAGTGACAGAGTAAGA 59.495 47.826 0.00 0.00 0.00 2.10
696 705 0.613777 AAGATCCCCGTGAAGTGACC 59.386 55.000 0.00 0.00 0.00 4.02
699 708 0.460284 CGGAAGATCCCCGTGAAGTG 60.460 60.000 14.11 0.00 41.91 3.16
780 789 4.400120 AGAGCAAACCCGGTGTAAAATAA 58.600 39.130 0.00 0.00 0.00 1.40
787 796 0.108329 CGATAGAGCAAACCCGGTGT 60.108 55.000 0.00 0.00 39.76 4.16
792 801 2.930682 GTTCTCACGATAGAGCAAACCC 59.069 50.000 0.00 0.00 41.38 4.11
800 809 1.112113 GCCCCAGTTCTCACGATAGA 58.888 55.000 0.00 0.00 41.38 1.98
1028 1037 3.207474 CAAGCCAATTGTACAGCTCAC 57.793 47.619 7.70 0.00 33.56 3.51
1058 1067 1.070786 TGGTTGTCTCCGCCTGAAC 59.929 57.895 0.00 0.00 0.00 3.18
1060 1069 2.741092 GTGGTTGTCTCCGCCTGA 59.259 61.111 0.00 0.00 32.43 3.86
1077 1086 1.656652 CAAGGTCAGGCTGGATAACG 58.343 55.000 15.73 0.00 0.00 3.18
1088 1097 0.604780 CACCTCAGCACCAAGGTCAG 60.605 60.000 0.00 0.00 44.13 3.51
1090 1099 0.108585 TTCACCTCAGCACCAAGGTC 59.891 55.000 0.00 0.00 44.13 3.85
1244 1259 3.243877 CGCTTCGAGTATTTGGATCTGTG 59.756 47.826 0.00 0.00 0.00 3.66
1260 1275 5.736824 TGCAAATTATGAATTGTACGCTTCG 59.263 36.000 0.00 0.00 0.00 3.79
1305 1324 3.181517 TCAGTATGCACGTACACGTCTAC 60.182 47.826 4.08 7.40 42.83 2.59
1318 1337 7.436970 GCATCAATGAAAATGAATCAGTATGCA 59.563 33.333 7.26 0.00 35.08 3.96
1319 1338 7.652105 AGCATCAATGAAAATGAATCAGTATGC 59.348 33.333 4.73 4.73 35.12 3.14
1359 1378 1.299976 GGATGACGGCCTTCTTGGT 59.700 57.895 11.01 0.00 38.35 3.67
1361 1380 0.250234 TCTGGATGACGGCCTTCTTG 59.750 55.000 11.01 0.00 0.00 3.02
1371 1390 1.216122 GCGCTTCTCATCTGGATGAC 58.784 55.000 8.96 0.23 42.42 3.06
1481 1500 4.087182 TCTAGTTCACCGTGGAAGAGAAT 58.913 43.478 0.00 0.00 0.00 2.40
1514 1533 9.546428 TTACAACTTCATATCATGACCATGTAG 57.454 33.333 17.37 17.37 39.39 2.74
1515 1534 9.898152 TTTACAACTTCATATCATGACCATGTA 57.102 29.630 15.34 8.08 39.39 2.29
1517 1536 9.726232 CTTTTACAACTTCATATCATGACCATG 57.274 33.333 0.00 5.13 39.39 3.66
1525 1544 6.430925 AGCACAGCTTTTACAACTTCATATCA 59.569 34.615 0.00 0.00 33.89 2.15
1537 1556 6.305638 GCAGTATTTAACAGCACAGCTTTTAC 59.694 38.462 0.00 0.00 40.19 2.01
1610 1631 4.484537 AGAAGACTAGATGTTGCATGCT 57.515 40.909 20.33 0.00 0.00 3.79
1671 1700 2.871096 AGTATGACTCCCCGCAAAAA 57.129 45.000 0.00 0.00 0.00 1.94
1672 1701 2.871096 AAGTATGACTCCCCGCAAAA 57.129 45.000 0.00 0.00 0.00 2.44
1673 1702 2.871096 AAAGTATGACTCCCCGCAAA 57.129 45.000 0.00 0.00 0.00 3.68
1674 1703 2.871096 AAAAGTATGACTCCCCGCAA 57.129 45.000 0.00 0.00 0.00 4.85
1675 1704 2.871096 AAAAAGTATGACTCCCCGCA 57.129 45.000 0.00 0.00 0.00 5.69
1699 1728 9.444600 TTTACCCAAAGTATGACTCAAGTATTC 57.555 33.333 0.00 0.00 0.00 1.75
1857 2023 0.464373 CGTCTGGCATGCCTGGTATT 60.464 55.000 34.94 0.00 35.98 1.89
1875 2041 2.760159 CGTGGTTTATGGCAGGCCG 61.760 63.158 5.74 0.00 39.42 6.13
1905 2071 4.847198 TGACAGACTACCCTACGATTACA 58.153 43.478 0.00 0.00 0.00 2.41
1937 2103 6.693315 AATAACCTGCGCAATACTTATGTT 57.307 33.333 13.05 7.40 0.00 2.71
1951 2117 4.542735 ACAAACGTTTGCTAATAACCTGC 58.457 39.130 34.70 0.00 41.79 4.85
1952 2118 7.322699 CAGTTACAAACGTTTGCTAATAACCTG 59.677 37.037 34.70 25.74 41.79 4.00
1969 2135 7.499563 TGACTTGTAATAGTTGGCAGTTACAAA 59.500 33.333 19.94 10.44 42.81 2.83
1974 2140 6.237901 TGATGACTTGTAATAGTTGGCAGTT 58.762 36.000 0.00 0.00 0.00 3.16
2022 2188 3.010420 CTCTCATCGGTCACTGTAGACA 58.990 50.000 10.85 0.00 40.29 3.41
2027 2193 3.753294 AAAACTCTCATCGGTCACTGT 57.247 42.857 0.00 0.00 0.00 3.55
2029 2195 4.073293 ACAAAAACTCTCATCGGTCACT 57.927 40.909 0.00 0.00 0.00 3.41
2030 2196 4.989168 AGTACAAAAACTCTCATCGGTCAC 59.011 41.667 0.00 0.00 0.00 3.67
2042 2208 3.244112 CGGACAGAGGGAGTACAAAAACT 60.244 47.826 0.00 0.00 0.00 2.66
2043 2209 3.064931 CGGACAGAGGGAGTACAAAAAC 58.935 50.000 0.00 0.00 0.00 2.43
2052 2218 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2054 2220 3.939066 ACAAGTATTTTCGGACAGAGGG 58.061 45.455 0.00 0.00 0.00 4.30
2055 2221 4.154195 CCAACAAGTATTTTCGGACAGAGG 59.846 45.833 0.00 0.00 0.00 3.69
2056 2222 4.994852 TCCAACAAGTATTTTCGGACAGAG 59.005 41.667 0.00 0.00 0.00 3.35
2057 2223 4.963373 TCCAACAAGTATTTTCGGACAGA 58.037 39.130 0.00 0.00 0.00 3.41
2059 2225 4.963373 TCTCCAACAAGTATTTTCGGACA 58.037 39.130 0.00 0.00 0.00 4.02
2060 2226 5.934935 TTCTCCAACAAGTATTTTCGGAC 57.065 39.130 0.00 0.00 0.00 4.79
2062 2228 5.572896 GCATTTCTCCAACAAGTATTTTCGG 59.427 40.000 0.00 0.00 0.00 4.30
2063 2229 6.148948 TGCATTTCTCCAACAAGTATTTTCG 58.851 36.000 0.00 0.00 0.00 3.46
2064 2230 9.638239 TTATGCATTTCTCCAACAAGTATTTTC 57.362 29.630 3.54 0.00 0.00 2.29
2065 2231 9.995003 TTTATGCATTTCTCCAACAAGTATTTT 57.005 25.926 3.54 0.00 0.00 1.82
2066 2232 9.995003 TTTTATGCATTTCTCCAACAAGTATTT 57.005 25.926 3.54 0.00 0.00 1.40
2067 2233 9.995003 TTTTTATGCATTTCTCCAACAAGTATT 57.005 25.926 3.54 0.00 0.00 1.89
2069 2235 9.421806 CATTTTTATGCATTTCTCCAACAAGTA 57.578 29.630 3.54 0.00 0.00 2.24
2070 2236 8.149647 TCATTTTTATGCATTTCTCCAACAAGT 58.850 29.630 3.54 0.00 0.00 3.16
2071 2237 8.537049 TCATTTTTATGCATTTCTCCAACAAG 57.463 30.769 3.54 0.00 0.00 3.16
2072 2238 8.899427 TTCATTTTTATGCATTTCTCCAACAA 57.101 26.923 3.54 0.00 0.00 2.83
2073 2239 8.937884 CATTCATTTTTATGCATTTCTCCAACA 58.062 29.630 3.54 0.00 0.00 3.33
2074 2240 8.938906 ACATTCATTTTTATGCATTTCTCCAAC 58.061 29.630 3.54 0.00 0.00 3.77
2113 2279 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
2114 2280 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
2115 2281 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
2116 2282 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
2117 2283 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
2118 2284 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
2119 2285 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
2120 2286 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
2121 2287 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
2122 2288 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
2123 2289 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
2124 2290 2.558795 CTCGTCGGAGGAATGGATGTAT 59.441 50.000 1.73 0.00 36.61 2.29
2125 2291 1.954382 CTCGTCGGAGGAATGGATGTA 59.046 52.381 1.73 0.00 36.61 2.29
2126 2292 0.747255 CTCGTCGGAGGAATGGATGT 59.253 55.000 1.73 0.00 36.61 3.06
2127 2293 0.747255 ACTCGTCGGAGGAATGGATG 59.253 55.000 1.73 0.00 44.93 3.51
2128 2294 2.359981 TACTCGTCGGAGGAATGGAT 57.640 50.000 1.73 0.00 44.93 3.41
2129 2295 2.359981 ATACTCGTCGGAGGAATGGA 57.640 50.000 1.73 0.00 44.93 3.41
2130 2296 3.381949 GAAATACTCGTCGGAGGAATGG 58.618 50.000 1.73 0.00 44.93 3.16
2131 2297 3.381949 GGAAATACTCGTCGGAGGAATG 58.618 50.000 1.73 0.00 44.93 2.67
2132 2298 2.034305 CGGAAATACTCGTCGGAGGAAT 59.966 50.000 1.73 0.00 44.93 3.01
2133 2299 1.402968 CGGAAATACTCGTCGGAGGAA 59.597 52.381 1.73 0.00 44.93 3.36
2134 2300 1.019673 CGGAAATACTCGTCGGAGGA 58.980 55.000 0.00 0.00 44.93 3.71
2135 2301 0.030369 CCGGAAATACTCGTCGGAGG 59.970 60.000 0.00 0.00 44.93 4.30
2136 2302 1.019673 TCCGGAAATACTCGTCGGAG 58.980 55.000 0.00 0.00 43.84 4.63
2137 2303 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
2138 2304 0.590732 CGTCCGGAAATACTCGTCGG 60.591 60.000 5.23 0.00 41.80 4.79
2139 2305 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
2140 2306 0.734889 TCCGTCCGGAAATACTCGTC 59.265 55.000 5.23 0.00 42.05 4.20
2141 2307 0.737219 CTCCGTCCGGAAATACTCGT 59.263 55.000 5.23 0.00 44.66 4.18
2142 2308 0.030369 CCTCCGTCCGGAAATACTCG 59.970 60.000 5.23 3.90 44.66 4.18
2143 2309 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
2144 2310 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2145 2311 0.826062 TTCCCTCCGTCCGGAAATAC 59.174 55.000 5.23 0.00 44.66 1.89
2146 2312 1.797320 ATTCCCTCCGTCCGGAAATA 58.203 50.000 5.23 0.00 44.66 1.40
2147 2313 1.692519 CTATTCCCTCCGTCCGGAAAT 59.307 52.381 5.23 9.21 44.66 2.17
2148 2314 1.117150 CTATTCCCTCCGTCCGGAAA 58.883 55.000 5.23 1.92 44.66 3.13
2149 2315 0.032813 ACTATTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2150 2316 0.846015 TACTATTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2151 2317 1.245732 CTACTATTCCCTCCGTCCGG 58.754 60.000 0.00 0.00 0.00 5.14
2152 2318 1.607628 CACTACTATTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
2153 2319 1.962100 CCACTACTATTCCCTCCGTCC 59.038 57.143 0.00 0.00 0.00 4.79
2154 2320 2.941480 TCCACTACTATTCCCTCCGTC 58.059 52.381 0.00 0.00 0.00 4.79
2155 2321 3.140519 AGATCCACTACTATTCCCTCCGT 59.859 47.826 0.00 0.00 0.00 4.69
2156 2322 3.768878 AGATCCACTACTATTCCCTCCG 58.231 50.000 0.00 0.00 0.00 4.63
2157 2323 6.783482 AGTAAAGATCCACTACTATTCCCTCC 59.217 42.308 0.00 0.00 0.00 4.30
2158 2324 7.506261 TGAGTAAAGATCCACTACTATTCCCTC 59.494 40.741 0.00 0.00 0.00 4.30
2159 2325 7.363031 TGAGTAAAGATCCACTACTATTCCCT 58.637 38.462 0.00 0.00 0.00 4.20
2160 2326 7.598759 TGAGTAAAGATCCACTACTATTCCC 57.401 40.000 0.00 0.00 0.00 3.97
2288 2455 8.211629 ACTTTCCTAAATCATAGGACATGGTAC 58.788 37.037 3.74 0.00 42.93 3.34
2389 2559 9.609346 ACGGCATGACTACTTTTATTAATAAGT 57.391 29.630 7.91 8.14 38.16 2.24
2390 2560 9.864034 CACGGCATGACTACTTTTATTAATAAG 57.136 33.333 7.91 2.64 0.00 1.73
2391 2561 9.386010 ACACGGCATGACTACTTTTATTAATAA 57.614 29.630 3.71 3.71 0.00 1.40
2394 2564 7.675962 AACACGGCATGACTACTTTTATTAA 57.324 32.000 0.00 0.00 0.00 1.40
2413 2583 6.804295 GTGCTCATAATAGATCTCCTAACACG 59.196 42.308 0.00 0.00 0.00 4.49
2414 2584 7.596995 GTGTGCTCATAATAGATCTCCTAACAC 59.403 40.741 0.00 0.02 0.00 3.32
2448 2618 9.063615 ACGCTTTTATATTTCTTTACATAGGGG 57.936 33.333 0.00 0.00 0.00 4.79
2497 2667 9.525826 CCCTCCATAAAGAAATATAAGAGCATT 57.474 33.333 0.00 0.00 0.00 3.56
2498 2668 8.894592 TCCCTCCATAAAGAAATATAAGAGCAT 58.105 33.333 0.00 0.00 0.00 3.79
2499 2669 8.275187 TCCCTCCATAAAGAAATATAAGAGCA 57.725 34.615 0.00 0.00 0.00 4.26
2500 2670 8.379331 ACTCCCTCCATAAAGAAATATAAGAGC 58.621 37.037 0.00 0.00 0.00 4.09
2508 2678 9.676129 TTCTCTATACTCCCTCCATAAAGAAAT 57.324 33.333 0.00 0.00 0.00 2.17
2509 2679 9.502035 TTTCTCTATACTCCCTCCATAAAGAAA 57.498 33.333 0.00 0.00 0.00 2.52
2510 2680 9.676129 ATTTCTCTATACTCCCTCCATAAAGAA 57.324 33.333 0.00 0.00 0.00 2.52
2514 2684 9.892444 TGTTATTTCTCTATACTCCCTCCATAA 57.108 33.333 0.00 0.00 0.00 1.90
2515 2685 9.892444 TTGTTATTTCTCTATACTCCCTCCATA 57.108 33.333 0.00 0.00 0.00 2.74
2516 2686 8.798975 TTGTTATTTCTCTATACTCCCTCCAT 57.201 34.615 0.00 0.00 0.00 3.41
2517 2687 7.844779 ACTTGTTATTTCTCTATACTCCCTCCA 59.155 37.037 0.00 0.00 0.00 3.86
2518 2688 8.252624 ACTTGTTATTTCTCTATACTCCCTCC 57.747 38.462 0.00 0.00 0.00 4.30
2539 2709 9.906660 GATCTCCTAACATAGAATGTCTACTTG 57.093 37.037 0.00 0.00 44.07 3.16
2550 2720 9.588096 TGCTGTTAATAGATCTCCTAACATAGA 57.412 33.333 21.21 11.18 34.63 1.98
2705 2969 6.701145 TTTGTGCCACTTTGTTAGAATGTA 57.299 33.333 0.00 0.00 0.00 2.29
2723 2987 4.021719 ACCTGAGGATGCTCAAATTTTGTG 60.022 41.667 18.24 7.78 32.43 3.33
2754 3018 9.965824 CTTGGTTTGTGTTTCTAGACAATATTT 57.034 29.630 0.00 0.00 37.38 1.40
2782 3046 8.579863 ACGTCATACCCCTAACATAATACTAAC 58.420 37.037 0.00 0.00 0.00 2.34
2791 3057 2.762327 ACGAACGTCATACCCCTAACAT 59.238 45.455 0.00 0.00 0.00 2.71
2815 3081 1.010462 GGTTGTTCCACGTTCGCAC 60.010 57.895 0.00 0.00 35.97 5.34
2869 3135 9.624697 TTAGAACTCAAACAAAATATGTCATGC 57.375 29.630 0.00 0.00 42.99 4.06
2911 3177 9.169592 GGTAATTTATTTTAGTACTCACCTGCA 57.830 33.333 0.00 0.00 0.00 4.41
2912 3178 9.392259 AGGTAATTTATTTTAGTACTCACCTGC 57.608 33.333 0.00 0.00 30.57 4.85
2951 3217 1.269998 ACAACTACGACCTGAGCTCAC 59.730 52.381 13.74 2.06 0.00 3.51
2988 3254 2.611292 GCGGAAGGAAGATCAACTGATG 59.389 50.000 0.00 0.00 34.37 3.07
2991 3257 2.393271 AGCGGAAGGAAGATCAACTG 57.607 50.000 0.00 0.00 0.00 3.16
3073 3339 2.351455 TGTGTTTGTCTCGACAGCAAA 58.649 42.857 0.00 1.59 42.94 3.68
3078 3344 4.499188 CCTCTACTTGTGTTTGTCTCGACA 60.499 45.833 0.00 0.00 39.98 4.35
3105 3371 2.567497 GCATGCCAGCTGTGTTGGT 61.567 57.895 13.81 0.00 36.29 3.67
3123 3389 1.963515 CTTTGTTGAAGGTTGAGGGGG 59.036 52.381 0.00 0.00 0.00 5.40
3136 3402 6.884096 TGATTGTTGTTACTTGCTTTGTTG 57.116 33.333 0.00 0.00 0.00 3.33
3178 3445 2.093764 TGCCACACACATCGATCATGTA 60.094 45.455 10.70 0.00 44.60 2.29
3192 3459 9.801873 AAATACAAAACTAATATGATGCCACAC 57.198 29.630 0.00 0.00 0.00 3.82
3194 3461 9.169468 CGAAATACAAAACTAATATGATGCCAC 57.831 33.333 0.00 0.00 0.00 5.01
3208 3475 5.854866 GGCAAACTAGTCCGAAATACAAAAC 59.145 40.000 0.00 0.00 0.00 2.43
3219 3486 4.035208 GGTAAATCATGGCAAACTAGTCCG 59.965 45.833 0.00 0.00 0.00 4.79
3263 3530 7.730364 ATAATGAAATAGTGCTTTCCTACGG 57.270 36.000 0.00 0.00 34.83 4.02
3278 3549 8.823220 AGGTACAAAGGCACTAATAATGAAAT 57.177 30.769 0.00 0.00 38.49 2.17
3324 3595 6.146510 AGACTCGAGACTATGTTCGTGATATC 59.853 42.308 21.68 0.00 37.99 1.63
3332 3603 7.074507 TGTAAGAAGACTCGAGACTATGTTC 57.925 40.000 21.68 12.44 0.00 3.18
3397 4491 3.055819 TGAAATTCCTCGGTCTCCTTCTG 60.056 47.826 0.00 0.00 0.00 3.02
3431 4525 1.805428 TTTTTCAGCTTGGAGCCGGC 61.805 55.000 21.89 21.89 43.77 6.13
3469 4563 1.000060 GATGCAAAGCCTGTTCTGCAA 60.000 47.619 0.00 0.00 46.97 4.08
3474 4568 2.602878 CATGTGATGCAAAGCCTGTTC 58.397 47.619 0.00 0.00 0.00 3.18
3491 4585 0.689623 GGTATCCTCCCCTCTGCATG 59.310 60.000 0.00 0.00 0.00 4.06
3578 4672 2.236395 CCACCGGAGACATTCTTAAGGT 59.764 50.000 9.46 0.00 31.38 3.50
3615 4709 2.012948 GTCGACGACGGTGTGGTTC 61.013 63.158 12.94 0.00 40.21 3.62
3651 4745 0.250234 CTGGATTTGGAGCCGTGAGA 59.750 55.000 0.00 0.00 32.65 3.27
3715 4809 2.801859 CCACCAAGGTGTTTCCGTT 58.198 52.632 17.36 0.00 44.02 4.44
3733 4827 2.813061 AGCACAAGCAACATGTTGAAC 58.187 42.857 36.65 22.13 45.49 3.18
3763 4857 3.741476 GCCCGCAAGCACCTTCAG 61.741 66.667 0.00 0.00 0.00 3.02
3976 5070 2.509548 TCAAATTGGATGGAGGTCGGAT 59.490 45.455 0.00 0.00 0.00 4.18
3996 5093 6.479001 TCTCAAACACAGTACAAGCTTTACTC 59.521 38.462 14.53 0.63 0.00 2.59
4007 5104 9.419297 TGTATGACTATTTCTCAAACACAGTAC 57.581 33.333 0.00 0.00 0.00 2.73
4010 5107 7.819415 TCCTGTATGACTATTTCTCAAACACAG 59.181 37.037 0.00 0.00 0.00 3.66
4047 5158 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
4048 5159 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
4049 5160 3.375500 AACGCGCACACACACACAC 62.375 57.895 5.73 0.00 0.00 3.82
4050 5161 3.121676 AACGCGCACACACACACA 61.122 55.556 5.73 0.00 0.00 3.72
4051 5162 2.647481 CAACGCGCACACACACAC 60.647 61.111 5.73 0.00 0.00 3.82
4052 5163 3.870422 CCAACGCGCACACACACA 61.870 61.111 5.73 0.00 0.00 3.72
4053 5164 4.605967 CCCAACGCGCACACACAC 62.606 66.667 5.73 0.00 0.00 3.82
4055 5166 4.307908 GACCCAACGCGCACACAC 62.308 66.667 5.73 0.00 0.00 3.82
4056 5167 4.539083 AGACCCAACGCGCACACA 62.539 61.111 5.73 0.00 0.00 3.72
4057 5168 2.331019 AAAAGACCCAACGCGCACAC 62.331 55.000 5.73 0.00 0.00 3.82
4058 5169 2.115911 AAAAGACCCAACGCGCACA 61.116 52.632 5.73 0.00 0.00 4.57
4059 5170 1.657181 CAAAAGACCCAACGCGCAC 60.657 57.895 5.73 0.00 0.00 5.34
4060 5171 2.718731 CAAAAGACCCAACGCGCA 59.281 55.556 5.73 0.00 0.00 6.09
4061 5172 2.729491 GCAAAAGACCCAACGCGC 60.729 61.111 5.73 0.00 0.00 6.86
4062 5173 1.370414 CTGCAAAAGACCCAACGCG 60.370 57.895 3.53 3.53 0.00 6.01
4063 5174 1.007387 CCTGCAAAAGACCCAACGC 60.007 57.895 0.00 0.00 0.00 4.84
4064 5175 0.310854 GTCCTGCAAAAGACCCAACG 59.689 55.000 0.00 0.00 0.00 4.10
4116 5227 2.203337 TTGCTGGTGGTGGCACTC 60.203 61.111 18.45 10.85 38.23 3.51
4347 5458 0.889994 CACATCCACCACAACCCATG 59.110 55.000 0.00 0.00 0.00 3.66
4353 5464 2.092699 TCAACAGACACATCCACCACAA 60.093 45.455 0.00 0.00 0.00 3.33
4525 5651 9.410556 CCATAATTAATTTGCTAGCCATGTTAC 57.589 33.333 13.29 0.00 0.00 2.50
4597 5723 4.403432 CGGAGGTGGGAAATGTTACTACTA 59.597 45.833 0.00 0.00 0.00 1.82
4598 5724 3.197116 CGGAGGTGGGAAATGTTACTACT 59.803 47.826 0.00 0.00 0.00 2.57
4599 5725 3.528532 CGGAGGTGGGAAATGTTACTAC 58.471 50.000 0.00 0.00 0.00 2.73
4619 5745 1.132834 TGAATGTGCATAAGCCAAGCG 59.867 47.619 0.00 0.00 41.13 4.68
4671 5797 6.760298 TGCAAAGAAATGTAGAGCTCAGATAG 59.240 38.462 17.77 0.00 0.00 2.08
4672 5798 6.536582 GTGCAAAGAAATGTAGAGCTCAGATA 59.463 38.462 17.77 1.72 0.00 1.98
4673 5799 5.353678 GTGCAAAGAAATGTAGAGCTCAGAT 59.646 40.000 17.77 3.29 0.00 2.90
4675 5801 4.453478 TGTGCAAAGAAATGTAGAGCTCAG 59.547 41.667 17.77 0.00 0.00 3.35
4680 5817 5.929697 TCACTGTGCAAAGAAATGTAGAG 57.070 39.130 11.93 0.00 33.47 2.43
4717 5854 7.681939 TGAAGGCAGTACCATTAGTTTTTAG 57.318 36.000 0.00 0.00 43.14 1.85
4719 5856 7.539034 AATGAAGGCAGTACCATTAGTTTTT 57.461 32.000 0.00 0.00 43.14 1.94
4899 6048 1.434622 GACAGTGGCCTCATCATGCG 61.435 60.000 3.32 0.00 0.00 4.73
4921 6070 4.415150 AGTGGATGGTGCAGCGGG 62.415 66.667 11.91 0.00 0.00 6.13
5064 6213 3.851976 ACTACTCGGTTGTGAGATGAC 57.148 47.619 0.00 0.00 39.35 3.06
5142 6291 3.716431 ACTCCACCTTTAGGATCCGTAA 58.284 45.455 5.98 3.75 38.94 3.18
5163 6312 1.531423 CTCGGGCGTTATAGGAGCTA 58.469 55.000 0.00 0.00 0.00 3.32
5224 6373 4.207224 CCACATATCGCTTCGTAGAACTTG 59.793 45.833 0.00 0.00 45.90 3.16
5355 6504 1.301716 AGCACGGTAGCACCTGTTG 60.302 57.895 4.21 0.89 35.66 3.33
5505 6654 3.390135 TCGAGTTGTCCAGTGCTAAAAG 58.610 45.455 0.00 0.00 0.00 2.27
5645 6794 3.605634 ACACAACACAAGAGCACAACTA 58.394 40.909 0.00 0.00 0.00 2.24
5692 6841 4.834496 AGCCTGTGAGAATTGGATGAAAAA 59.166 37.500 0.00 0.00 0.00 1.94
5693 6842 4.410099 AGCCTGTGAGAATTGGATGAAAA 58.590 39.130 0.00 0.00 0.00 2.29
5829 6978 1.679898 GGAGAAGGAGGTGTGGGTG 59.320 63.158 0.00 0.00 0.00 4.61
5833 6982 0.252467 AGGAGGGAGAAGGAGGTGTG 60.252 60.000 0.00 0.00 0.00 3.82
5941 7090 0.321122 CCAGAGTTGCTCCTGTGACC 60.321 60.000 2.61 0.00 0.00 4.02
5961 7110 1.517257 CATGGTGGAGACGAGCGAC 60.517 63.158 0.00 0.00 0.00 5.19
6015 7164 0.239347 CGGCAACAGCTTTGAAGAGG 59.761 55.000 11.34 0.00 0.00 3.69
6113 7262 2.418628 CCCAAATTGTAGACGACGCATT 59.581 45.455 0.00 0.00 0.00 3.56
6187 7336 5.925969 GGTAACAAGCAAATAAACAGTGCAT 59.074 36.000 0.00 0.00 40.83 3.96
6214 7363 0.685097 ACTGCACGGGACAATGTACT 59.315 50.000 0.00 0.00 0.00 2.73
6312 7464 8.453238 TTTAGCAGTAATTAAGTTGGTGTTCA 57.547 30.769 7.47 0.00 0.00 3.18
6741 7918 6.324770 CCCAAATACTTCATAGGAAAATGCCT 59.675 38.462 0.00 0.00 42.15 4.75
6786 7963 3.969976 TCCCAGTCCATTCCTCTAAGATG 59.030 47.826 0.00 0.00 0.00 2.90
6787 7964 4.286813 TCCCAGTCCATTCCTCTAAGAT 57.713 45.455 0.00 0.00 0.00 2.40
6846 8165 5.103771 AGAGGAAGCAGAATTACCAATCCAT 60.104 40.000 0.00 0.00 0.00 3.41
6871 8190 3.529835 AAAGGGCAAGCCTCCCCAC 62.530 63.158 11.40 0.00 45.03 4.61
6872 8191 2.789149 AAAAGGGCAAGCCTCCCCA 61.789 57.895 11.40 0.00 45.03 4.96
6873 8192 2.120496 AAAAGGGCAAGCCTCCCC 59.880 61.111 11.40 0.00 45.03 4.81
6883 8203 3.092301 AGAGGTTAGCATTCAAAAGGGC 58.908 45.455 0.00 0.00 0.00 5.19
6915 8235 7.170998 GGAATCCAACCGAACATGTAGTAATAG 59.829 40.741 0.00 0.00 0.00 1.73
7096 8422 1.144057 GCCTCCGTCGACCATTCAT 59.856 57.895 10.58 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.