Multiple sequence alignment - TraesCS5B01G329800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G329800 chr5B 100.000 2791 0 0 1 2791 513737893 513735103 0.000000e+00 5155.0
1 TraesCS5B01G329800 chr5B 100.000 519 0 0 3119 3637 513734775 513734257 0.000000e+00 959.0
2 TraesCS5B01G329800 chr5D 96.009 2305 69 16 6 2306 424665120 424662835 0.000000e+00 3725.0
3 TraesCS5B01G329800 chr5D 87.787 2219 211 32 1 2212 424782390 424780225 0.000000e+00 2542.0
4 TraesCS5B01G329800 chr5D 93.622 392 15 3 2384 2765 424662634 424662243 8.760000e-161 577.0
5 TraesCS5B01G329800 chr5D 83.654 208 20 1 3221 3414 424662244 424662037 2.230000e-42 183.0
6 TraesCS5B01G329800 chr5D 86.250 160 22 0 3478 3637 299808094 299808253 1.340000e-39 174.0
7 TraesCS5B01G329800 chr5A 93.797 1338 58 12 895 2219 538583585 538582260 0.000000e+00 1988.0
8 TraesCS5B01G329800 chr5A 90.327 1437 119 13 788 2218 538758774 538757352 0.000000e+00 1866.0
9 TraesCS5B01G329800 chr5A 91.103 562 34 5 2214 2765 538582217 538581662 0.000000e+00 747.0
10 TraesCS5B01G329800 chr5A 89.247 465 44 5 1 461 538759432 538758970 8.760000e-161 577.0
11 TraesCS5B01G329800 chr5A 88.644 317 21 8 559 870 538583889 538583583 4.440000e-99 372.0
12 TraesCS5B01G329800 chr5A 87.565 193 10 7 559 749 538758960 538758780 1.020000e-50 211.0
13 TraesCS5B01G329800 chr5A 87.273 55 7 0 3221 3275 538714989 538714935 3.030000e-06 63.9
14 TraesCS5B01G329800 chrUn 91.102 1270 107 6 946 2212 303983037 303981771 0.000000e+00 1714.0
15 TraesCS5B01G329800 chrUn 91.102 1270 107 6 946 2212 356552694 356553960 0.000000e+00 1714.0
16 TraesCS5B01G329800 chrUn 87.380 832 85 11 1 828 349172330 349173145 0.000000e+00 937.0
17 TraesCS5B01G329800 chrUn 87.260 832 86 11 1 828 437496828 437497643 0.000000e+00 931.0
18 TraesCS5B01G329800 chrUn 87.554 699 67 11 134 828 468700675 468699993 0.000000e+00 791.0
19 TraesCS5B01G329800 chr1B 84.080 201 28 4 3439 3637 411825919 411826117 1.330000e-44 191.0
20 TraesCS5B01G329800 chr7D 87.500 160 20 0 3478 3637 515397175 515397016 6.200000e-43 185.0
21 TraesCS5B01G329800 chr6B 86.957 161 16 5 3480 3637 117524584 117524426 3.730000e-40 176.0
22 TraesCS5B01G329800 chr6B 100.000 28 0 0 660 687 420859019 420859046 7.000000e-03 52.8
23 TraesCS5B01G329800 chr3D 80.769 234 38 7 3407 3637 13025760 13025989 3.730000e-40 176.0
24 TraesCS5B01G329800 chr7A 82.500 200 33 2 3439 3637 493092020 493091822 1.340000e-39 174.0
25 TraesCS5B01G329800 chr7A 85.625 160 23 0 3478 3637 544068679 544068520 6.250000e-38 169.0
26 TraesCS5B01G329800 chr7A 90.816 98 9 0 3119 3216 18648854 18648951 8.190000e-27 132.0
27 TraesCS5B01G329800 chr4B 82.039 206 35 2 3433 3636 405646057 405645852 1.340000e-39 174.0
28 TraesCS5B01G329800 chr2B 81.579 190 35 0 3448 3637 646064189 646064378 1.350000e-34 158.0
29 TraesCS5B01G329800 chr2A 97.143 70 2 0 3119 3188 724052364 724052295 6.380000e-23 119.0
30 TraesCS5B01G329800 chr1A 100.000 28 0 0 660 687 311081425 311081452 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G329800 chr5B 513734257 513737893 3636 True 3057.000000 5155 100.000000 1 3637 2 chr5B.!!$R1 3636
1 TraesCS5B01G329800 chr5D 424780225 424782390 2165 True 2542.000000 2542 87.787000 1 2212 1 chr5D.!!$R1 2211
2 TraesCS5B01G329800 chr5D 424662037 424665120 3083 True 1495.000000 3725 91.095000 6 3414 3 chr5D.!!$R2 3408
3 TraesCS5B01G329800 chr5A 538581662 538583889 2227 True 1035.666667 1988 91.181333 559 2765 3 chr5A.!!$R2 2206
4 TraesCS5B01G329800 chr5A 538757352 538759432 2080 True 884.666667 1866 89.046333 1 2218 3 chr5A.!!$R3 2217
5 TraesCS5B01G329800 chrUn 303981771 303983037 1266 True 1714.000000 1714 91.102000 946 2212 1 chrUn.!!$R1 1266
6 TraesCS5B01G329800 chrUn 356552694 356553960 1266 False 1714.000000 1714 91.102000 946 2212 1 chrUn.!!$F2 1266
7 TraesCS5B01G329800 chrUn 349172330 349173145 815 False 937.000000 937 87.380000 1 828 1 chrUn.!!$F1 827
8 TraesCS5B01G329800 chrUn 437496828 437497643 815 False 931.000000 931 87.260000 1 828 1 chrUn.!!$F3 827
9 TraesCS5B01G329800 chrUn 468699993 468700675 682 True 791.000000 791 87.554000 134 828 1 chrUn.!!$R2 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.031994 GCATGTTGTCGTTGGCCTTT 59.968 50.0 3.32 0.0 0.00 3.11 F
898 921 0.758734 TAGTGATTGGATGGCCGGAG 59.241 55.0 5.05 0.0 36.79 4.63 F
1416 1446 1.339097 ACTACCCCGCCACAGATATC 58.661 55.0 0.00 0.0 0.00 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1017 1047 1.071699 GGACACAAGCCAAGTAGGTGA 59.928 52.381 0.0 0.0 40.61 4.02 R
2147 2189 0.179150 TTGTGCGTGTGAAAACCAGC 60.179 50.000 0.0 0.0 0.00 4.85 R
3187 3421 0.031585 TACACGCACGGAGATATGCC 59.968 55.000 0.0 0.0 38.69 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.759346 AGTCTCGTGCTTTCCAGGTT 59.241 50.000 0.00 0.00 0.00 3.50
67 68 0.031994 GCATGTTGTCGTTGGCCTTT 59.968 50.000 3.32 0.00 0.00 3.11
256 258 1.336125 TGCATTCACGCAAACATGTGA 59.664 42.857 0.00 0.00 42.98 3.58
589 595 5.893897 GAGGATCTCATCAAAACAAAGCT 57.106 39.130 0.00 0.00 0.00 3.74
597 603 6.716628 TCTCATCAAAACAAAGCTAGACCAAT 59.283 34.615 0.00 0.00 0.00 3.16
643 649 6.936279 TCAAGTACTAGCAAGTTAAGCATCT 58.064 36.000 0.00 0.00 37.15 2.90
725 740 3.577415 GGTGCTATATTCCGGTCCTAGTT 59.423 47.826 0.00 0.00 0.00 2.24
890 913 3.385755 GGCCTTTGCAATAGTGATTGGAT 59.614 43.478 0.00 0.00 42.28 3.41
892 915 4.738541 GCCTTTGCAATAGTGATTGGATGG 60.739 45.833 0.00 4.30 42.28 3.51
893 916 4.365723 CTTTGCAATAGTGATTGGATGGC 58.634 43.478 0.00 0.00 42.28 4.40
894 917 2.309613 TGCAATAGTGATTGGATGGCC 58.690 47.619 0.00 0.00 42.44 5.36
895 918 1.267806 GCAATAGTGATTGGATGGCCG 59.732 52.381 0.00 0.00 42.44 6.13
896 919 1.881973 CAATAGTGATTGGATGGCCGG 59.118 52.381 0.00 0.00 39.10 6.13
897 920 1.434188 ATAGTGATTGGATGGCCGGA 58.566 50.000 5.05 0.00 36.79 5.14
898 921 0.758734 TAGTGATTGGATGGCCGGAG 59.241 55.000 5.05 0.00 36.79 4.63
924 953 4.094739 CACACATGCGTTTGAAGATATGGA 59.905 41.667 0.00 0.00 0.00 3.41
981 1010 4.726825 AGCTATAATTGGAGGGTCCTCAAA 59.273 41.667 17.71 13.54 44.40 2.69
1076 1106 4.033776 ACACCGGCTCACCATGGG 62.034 66.667 18.09 5.22 34.57 4.00
1265 1295 3.211045 ACCGTGTAAAGCTGTTTGACAT 58.789 40.909 0.00 0.00 0.00 3.06
1321 1351 2.627945 GCATCTCGGTAATGGTCACAA 58.372 47.619 0.00 0.00 0.00 3.33
1347 1377 4.864334 GGCGACATCCCTGGCCTG 62.864 72.222 3.32 2.54 42.29 4.85
1416 1446 1.339097 ACTACCCCGCCACAGATATC 58.661 55.000 0.00 0.00 0.00 1.63
1955 1985 2.787601 TATCTCATCGGTGCGGTTAC 57.212 50.000 0.00 0.00 0.00 2.50
1972 2002 2.815684 TACCTCCGGGTCAGGCACAT 62.816 60.000 7.59 0.00 45.98 3.21
1973 2003 2.671070 CTCCGGGTCAGGCACATT 59.329 61.111 0.00 0.00 0.00 2.71
2010 2040 5.032863 CGGAAGTTCGAGACGTACATATTT 58.967 41.667 0.00 0.00 29.93 1.40
2147 2189 1.583856 GTGATGACGAGCACACATACG 59.416 52.381 0.00 0.00 38.43 3.06
2148 2190 0.572590 GATGACGAGCACACATACGC 59.427 55.000 0.00 0.00 0.00 4.42
2149 2191 0.173481 ATGACGAGCACACATACGCT 59.827 50.000 0.00 0.00 42.42 5.07
2150 2192 0.732538 TGACGAGCACACATACGCTG 60.733 55.000 0.00 0.00 38.99 5.18
2151 2193 1.413767 GACGAGCACACATACGCTGG 61.414 60.000 0.00 0.00 38.99 4.85
2152 2194 1.446099 CGAGCACACATACGCTGGT 60.446 57.895 0.00 0.00 38.99 4.00
2153 2195 1.014044 CGAGCACACATACGCTGGTT 61.014 55.000 0.00 0.00 38.99 3.67
2154 2196 1.156736 GAGCACACATACGCTGGTTT 58.843 50.000 0.00 0.00 38.99 3.27
2155 2197 1.535462 GAGCACACATACGCTGGTTTT 59.465 47.619 0.00 0.00 38.99 2.43
2161 2203 1.529438 ACATACGCTGGTTTTCACACG 59.471 47.619 0.00 0.00 0.00 4.49
2177 2220 3.748568 TCACACGCACAATGCAAGTTATA 59.251 39.130 0.00 0.00 45.36 0.98
2338 2547 0.037605 ACAAATCCTCCACGACGGAC 60.038 55.000 0.00 0.00 39.64 4.79
2344 2553 2.979197 CTCCACGACGGACGAAGCT 61.979 63.158 6.90 0.00 45.77 3.74
2382 2591 0.601057 TCATCCACGAAGAGCGAACA 59.399 50.000 0.00 0.00 44.57 3.18
2414 2638 2.461110 GCCAAGGTACGCACATCGG 61.461 63.158 0.00 0.00 43.86 4.18
2416 2640 1.739929 CAAGGTACGCACATCGGCA 60.740 57.895 0.00 0.00 43.86 5.69
2425 2659 1.587876 CACATCGGCACATGCATGC 60.588 57.895 26.53 15.36 45.34 4.06
2503 2737 1.270625 TGGTGACGGCGAAGAAGAAAT 60.271 47.619 16.62 0.00 0.00 2.17
2540 2774 3.096092 ACCCAAAGAAGAAAGTGCAACA 58.904 40.909 0.00 0.00 41.43 3.33
2737 2971 2.340337 ACGACGAAAAATTACCCTCCG 58.660 47.619 0.00 0.00 0.00 4.63
2767 3001 2.489329 TCTTCCGGGTAAGACTAACACG 59.511 50.000 0.00 0.00 43.32 4.49
2768 3002 2.198827 TCCGGGTAAGACTAACACGA 57.801 50.000 0.00 0.00 46.58 4.35
2769 3003 2.513753 TCCGGGTAAGACTAACACGAA 58.486 47.619 0.00 0.00 46.58 3.85
2770 3004 2.890311 TCCGGGTAAGACTAACACGAAA 59.110 45.455 0.00 0.00 46.58 3.46
2771 3005 3.320541 TCCGGGTAAGACTAACACGAAAA 59.679 43.478 0.00 0.00 46.58 2.29
2772 3006 4.021192 TCCGGGTAAGACTAACACGAAAAT 60.021 41.667 0.00 0.00 46.58 1.82
2773 3007 4.692155 CCGGGTAAGACTAACACGAAAATT 59.308 41.667 0.00 0.00 46.58 1.82
2774 3008 5.163923 CCGGGTAAGACTAACACGAAAATTC 60.164 44.000 0.00 0.00 46.58 2.17
2775 3009 5.636543 CGGGTAAGACTAACACGAAAATTCT 59.363 40.000 0.00 0.00 46.58 2.40
2776 3010 6.808212 CGGGTAAGACTAACACGAAAATTCTA 59.192 38.462 0.00 0.00 46.58 2.10
2777 3011 7.329226 CGGGTAAGACTAACACGAAAATTCTAA 59.671 37.037 0.00 0.00 46.58 2.10
2778 3012 8.992073 GGGTAAGACTAACACGAAAATTCTAAA 58.008 33.333 0.00 0.00 0.00 1.85
2784 3018 8.928844 ACTAACACGAAAATTCTAAATCAACG 57.071 30.769 0.00 0.00 0.00 4.10
2785 3019 8.767085 ACTAACACGAAAATTCTAAATCAACGA 58.233 29.630 0.00 0.00 0.00 3.85
2786 3020 9.588774 CTAACACGAAAATTCTAAATCAACGAA 57.411 29.630 0.00 0.00 0.00 3.85
2787 3021 7.831750 ACACGAAAATTCTAAATCAACGAAC 57.168 32.000 0.00 0.00 0.00 3.95
2788 3022 7.636326 ACACGAAAATTCTAAATCAACGAACT 58.364 30.769 0.00 0.00 0.00 3.01
2789 3023 8.767085 ACACGAAAATTCTAAATCAACGAACTA 58.233 29.630 0.00 0.00 0.00 2.24
2790 3024 9.755064 CACGAAAATTCTAAATCAACGAACTAT 57.245 29.630 0.00 0.00 0.00 2.12
3136 3370 3.890527 GTGTGGGCTCCTCATCATT 57.109 52.632 0.33 0.00 29.60 2.57
3137 3371 1.673168 GTGTGGGCTCCTCATCATTC 58.327 55.000 0.33 0.00 29.60 2.67
3138 3372 1.211457 GTGTGGGCTCCTCATCATTCT 59.789 52.381 0.33 0.00 29.60 2.40
3139 3373 1.918262 TGTGGGCTCCTCATCATTCTT 59.082 47.619 0.00 0.00 0.00 2.52
3140 3374 2.309755 TGTGGGCTCCTCATCATTCTTT 59.690 45.455 0.00 0.00 0.00 2.52
3141 3375 2.948315 GTGGGCTCCTCATCATTCTTTC 59.052 50.000 0.00 0.00 0.00 2.62
3142 3376 2.848694 TGGGCTCCTCATCATTCTTTCT 59.151 45.455 0.00 0.00 0.00 2.52
3143 3377 3.267812 TGGGCTCCTCATCATTCTTTCTT 59.732 43.478 0.00 0.00 0.00 2.52
3144 3378 3.882288 GGGCTCCTCATCATTCTTTCTTC 59.118 47.826 0.00 0.00 0.00 2.87
3145 3379 3.882288 GGCTCCTCATCATTCTTTCTTCC 59.118 47.826 0.00 0.00 0.00 3.46
3146 3380 4.521146 GCTCCTCATCATTCTTTCTTCCA 58.479 43.478 0.00 0.00 0.00 3.53
3147 3381 4.946157 GCTCCTCATCATTCTTTCTTCCAA 59.054 41.667 0.00 0.00 0.00 3.53
3148 3382 5.593502 GCTCCTCATCATTCTTTCTTCCAAT 59.406 40.000 0.00 0.00 0.00 3.16
3149 3383 6.238703 GCTCCTCATCATTCTTTCTTCCAATC 60.239 42.308 0.00 0.00 0.00 2.67
3150 3384 6.724351 TCCTCATCATTCTTTCTTCCAATCA 58.276 36.000 0.00 0.00 0.00 2.57
3151 3385 7.177184 TCCTCATCATTCTTTCTTCCAATCAA 58.823 34.615 0.00 0.00 0.00 2.57
3152 3386 7.670979 TCCTCATCATTCTTTCTTCCAATCAAA 59.329 33.333 0.00 0.00 0.00 2.69
3153 3387 8.308931 CCTCATCATTCTTTCTTCCAATCAAAA 58.691 33.333 0.00 0.00 0.00 2.44
3154 3388 9.871238 CTCATCATTCTTTCTTCCAATCAAAAT 57.129 29.630 0.00 0.00 0.00 1.82
3155 3389 9.647797 TCATCATTCTTTCTTCCAATCAAAATG 57.352 29.630 0.00 0.00 0.00 2.32
3156 3390 9.431887 CATCATTCTTTCTTCCAATCAAAATGT 57.568 29.630 0.00 0.00 0.00 2.71
3157 3391 9.649167 ATCATTCTTTCTTCCAATCAAAATGTC 57.351 29.630 0.00 0.00 0.00 3.06
3158 3392 8.090214 TCATTCTTTCTTCCAATCAAAATGTCC 58.910 33.333 0.00 0.00 0.00 4.02
3159 3393 6.345096 TCTTTCTTCCAATCAAAATGTCCC 57.655 37.500 0.00 0.00 0.00 4.46
3160 3394 5.837979 TCTTTCTTCCAATCAAAATGTCCCA 59.162 36.000 0.00 0.00 0.00 4.37
3161 3395 5.726980 TTCTTCCAATCAAAATGTCCCAG 57.273 39.130 0.00 0.00 0.00 4.45
3162 3396 4.996793 TCTTCCAATCAAAATGTCCCAGA 58.003 39.130 0.00 0.00 0.00 3.86
3163 3397 5.582953 TCTTCCAATCAAAATGTCCCAGAT 58.417 37.500 0.00 0.00 0.00 2.90
3164 3398 6.730447 TCTTCCAATCAAAATGTCCCAGATA 58.270 36.000 0.00 0.00 0.00 1.98
3165 3399 7.181361 TCTTCCAATCAAAATGTCCCAGATAA 58.819 34.615 0.00 0.00 0.00 1.75
3166 3400 7.340232 TCTTCCAATCAAAATGTCCCAGATAAG 59.660 37.037 0.00 0.00 0.00 1.73
3167 3401 5.360714 TCCAATCAAAATGTCCCAGATAAGC 59.639 40.000 0.00 0.00 0.00 3.09
3168 3402 5.361857 CCAATCAAAATGTCCCAGATAAGCT 59.638 40.000 0.00 0.00 0.00 3.74
3169 3403 6.127253 CCAATCAAAATGTCCCAGATAAGCTT 60.127 38.462 3.48 3.48 0.00 3.74
3170 3404 6.705863 ATCAAAATGTCCCAGATAAGCTTC 57.294 37.500 0.00 0.00 0.00 3.86
3171 3405 4.949856 TCAAAATGTCCCAGATAAGCTTCC 59.050 41.667 0.00 0.00 0.00 3.46
3172 3406 3.584733 AATGTCCCAGATAAGCTTCCC 57.415 47.619 0.00 0.00 0.00 3.97
3173 3407 2.270434 TGTCCCAGATAAGCTTCCCT 57.730 50.000 0.00 0.00 0.00 4.20
3174 3408 1.839994 TGTCCCAGATAAGCTTCCCTG 59.160 52.381 16.74 16.74 0.00 4.45
3175 3409 1.840635 GTCCCAGATAAGCTTCCCTGT 59.159 52.381 20.07 0.00 0.00 4.00
3176 3410 3.039011 GTCCCAGATAAGCTTCCCTGTA 58.961 50.000 20.07 10.01 0.00 2.74
3177 3411 3.454812 GTCCCAGATAAGCTTCCCTGTAA 59.545 47.826 20.07 9.76 0.00 2.41
3178 3412 4.080526 GTCCCAGATAAGCTTCCCTGTAAA 60.081 45.833 20.07 7.98 0.00 2.01
3179 3413 4.538490 TCCCAGATAAGCTTCCCTGTAAAA 59.462 41.667 20.07 6.22 0.00 1.52
3180 3414 4.884164 CCCAGATAAGCTTCCCTGTAAAAG 59.116 45.833 20.07 9.32 0.00 2.27
3181 3415 4.336713 CCAGATAAGCTTCCCTGTAAAAGC 59.663 45.833 20.07 0.00 46.52 3.51
3184 3418 2.180674 GCTTCCCTGTAAAAGCCCG 58.819 57.895 0.00 0.00 41.60 6.13
3185 3419 0.608308 GCTTCCCTGTAAAAGCCCGT 60.608 55.000 0.00 0.00 41.60 5.28
3186 3420 1.905637 CTTCCCTGTAAAAGCCCGTT 58.094 50.000 0.00 0.00 0.00 4.44
3187 3421 1.539827 CTTCCCTGTAAAAGCCCGTTG 59.460 52.381 0.00 0.00 0.00 4.10
3188 3422 0.250989 TCCCTGTAAAAGCCCGTTGG 60.251 55.000 0.00 0.00 0.00 3.77
3198 3432 4.361253 CCCGTTGGCATATCTCCG 57.639 61.111 0.00 0.00 0.00 4.63
3199 3433 1.445942 CCCGTTGGCATATCTCCGT 59.554 57.895 0.00 0.00 0.00 4.69
3200 3434 0.880278 CCCGTTGGCATATCTCCGTG 60.880 60.000 0.00 0.00 0.00 4.94
3201 3435 1.498865 CCGTTGGCATATCTCCGTGC 61.499 60.000 0.00 0.00 40.55 5.34
3202 3436 1.821241 CGTTGGCATATCTCCGTGCG 61.821 60.000 0.00 0.00 42.15 5.34
3203 3437 0.810031 GTTGGCATATCTCCGTGCGT 60.810 55.000 0.00 0.00 42.15 5.24
3204 3438 0.809636 TTGGCATATCTCCGTGCGTG 60.810 55.000 0.00 0.00 42.15 5.34
3205 3439 1.227263 GGCATATCTCCGTGCGTGT 60.227 57.895 0.00 0.00 42.15 4.49
3206 3440 0.031585 GGCATATCTCCGTGCGTGTA 59.968 55.000 0.00 0.00 42.15 2.90
3207 3441 1.409412 GCATATCTCCGTGCGTGTAG 58.591 55.000 0.00 0.00 0.00 2.74
3219 3453 2.517598 CGTGTAGCAAAGCTCACGT 58.482 52.632 23.11 0.00 45.35 4.49
3237 3471 5.941733 TCACGTACGTAGAAGAGCATTTTA 58.058 37.500 22.34 0.00 0.00 1.52
3248 3482 4.236527 AGAGCATTTTAGGGTGTAAGGG 57.763 45.455 0.00 0.00 0.00 3.95
3256 3490 1.146263 GGGTGTAAGGGCATCTCCG 59.854 63.158 0.00 0.00 34.94 4.63
3281 3515 4.625311 CGCTCACCACCAAATTTATTTTCC 59.375 41.667 0.00 0.00 0.00 3.13
3289 3523 5.580297 CACCAAATTTATTTTCCCATCCGTG 59.420 40.000 0.00 0.00 0.00 4.94
3290 3524 5.115480 CCAAATTTATTTTCCCATCCGTGG 58.885 41.667 0.00 0.00 45.61 4.94
3291 3525 4.400529 AATTTATTTTCCCATCCGTGGC 57.599 40.909 0.00 0.00 44.62 5.01
3292 3526 1.770294 TTATTTTCCCATCCGTGGCC 58.230 50.000 0.00 0.00 44.62 5.36
3295 3529 2.075355 TTTTCCCATCCGTGGCCAGT 62.075 55.000 5.11 0.00 44.62 4.00
3297 3531 2.438434 CCCATCCGTGGCCAGTTC 60.438 66.667 5.11 0.00 44.62 3.01
3298 3532 2.438434 CCATCCGTGGCCAGTTCC 60.438 66.667 5.11 0.00 39.01 3.62
3299 3533 2.438434 CATCCGTGGCCAGTTCCC 60.438 66.667 5.11 0.00 0.00 3.97
3306 3554 1.026718 GTGGCCAGTTCCCATCGAAG 61.027 60.000 5.11 0.00 34.34 3.79
3307 3555 2.115291 GGCCAGTTCCCATCGAAGC 61.115 63.158 0.00 0.00 0.00 3.86
3312 3560 1.376812 GTTCCCATCGAAGCCGGTT 60.377 57.895 1.90 0.00 36.24 4.44
3320 3568 1.948104 TCGAAGCCGGTTATCCAATG 58.052 50.000 1.90 0.00 36.24 2.82
3381 3629 2.993937 TGGGATTCATACAAACCGGAC 58.006 47.619 9.46 0.00 0.00 4.79
3392 3640 7.435305 TCATACAAACCGGACGATATTCATAA 58.565 34.615 9.46 0.00 0.00 1.90
3395 3643 7.380431 ACAAACCGGACGATATTCATAAAAA 57.620 32.000 9.46 0.00 0.00 1.94
3396 3644 7.992008 ACAAACCGGACGATATTCATAAAAAT 58.008 30.769 9.46 0.00 0.00 1.82
3401 3649 6.183360 CCGGACGATATTCATAAAAATCGGAG 60.183 42.308 0.00 0.12 44.12 4.63
3405 3653 6.009474 CGATATTCATAAAAATCGGAGCACG 58.991 40.000 0.00 0.00 46.11 5.34
3414 3662 2.910688 ATCGGAGCACGGTCATTATT 57.089 45.000 0.96 0.00 44.45 1.40
3415 3663 1.934589 TCGGAGCACGGTCATTATTG 58.065 50.000 0.96 0.00 44.45 1.90
3416 3664 1.206132 TCGGAGCACGGTCATTATTGT 59.794 47.619 0.96 0.00 44.45 2.71
3417 3665 2.006888 CGGAGCACGGTCATTATTGTT 58.993 47.619 0.00 0.00 39.42 2.83
3418 3666 2.223021 CGGAGCACGGTCATTATTGTTG 60.223 50.000 0.00 0.00 39.42 3.33
3419 3667 2.477863 GGAGCACGGTCATTATTGTTGC 60.478 50.000 0.00 0.00 0.00 4.17
3420 3668 1.472480 AGCACGGTCATTATTGTTGCC 59.528 47.619 0.00 0.00 0.00 4.52
3421 3669 1.472480 GCACGGTCATTATTGTTGCCT 59.528 47.619 0.00 0.00 0.00 4.75
3422 3670 2.094752 GCACGGTCATTATTGTTGCCTT 60.095 45.455 0.00 0.00 0.00 4.35
3423 3671 3.758300 CACGGTCATTATTGTTGCCTTC 58.242 45.455 0.00 0.00 0.00 3.46
3424 3672 2.752903 ACGGTCATTATTGTTGCCTTCC 59.247 45.455 0.00 0.00 0.00 3.46
3425 3673 2.223249 CGGTCATTATTGTTGCCTTCCG 60.223 50.000 0.00 0.00 0.00 4.30
3426 3674 2.099098 GGTCATTATTGTTGCCTTCCGG 59.901 50.000 0.00 0.00 0.00 5.14
3442 3690 4.162690 GGCGGCCGTCTCTTCCAT 62.163 66.667 28.70 0.00 0.00 3.41
3443 3691 2.586357 GCGGCCGTCTCTTCCATC 60.586 66.667 28.70 0.93 0.00 3.51
3444 3692 2.107141 CGGCCGTCTCTTCCATCC 59.893 66.667 19.50 0.00 0.00 3.51
3445 3693 2.107141 GGCCGTCTCTTCCATCCG 59.893 66.667 0.00 0.00 0.00 4.18
3446 3694 2.586357 GCCGTCTCTTCCATCCGC 60.586 66.667 0.00 0.00 0.00 5.54
3447 3695 2.107141 CCGTCTCTTCCATCCGCC 59.893 66.667 0.00 0.00 0.00 6.13
3448 3696 2.278857 CGTCTCTTCCATCCGCCG 60.279 66.667 0.00 0.00 0.00 6.46
3449 3697 2.893398 GTCTCTTCCATCCGCCGT 59.107 61.111 0.00 0.00 0.00 5.68
3450 3698 1.227002 GTCTCTTCCATCCGCCGTC 60.227 63.158 0.00 0.00 0.00 4.79
3451 3699 1.379977 TCTCTTCCATCCGCCGTCT 60.380 57.895 0.00 0.00 0.00 4.18
3452 3700 0.970937 TCTCTTCCATCCGCCGTCTT 60.971 55.000 0.00 0.00 0.00 3.01
3453 3701 0.528684 CTCTTCCATCCGCCGTCTTC 60.529 60.000 0.00 0.00 0.00 2.87
3454 3702 1.218047 CTTCCATCCGCCGTCTTCA 59.782 57.895 0.00 0.00 0.00 3.02
3455 3703 0.179073 CTTCCATCCGCCGTCTTCAT 60.179 55.000 0.00 0.00 0.00 2.57
3456 3704 0.461870 TTCCATCCGCCGTCTTCATG 60.462 55.000 0.00 0.00 0.00 3.07
3457 3705 1.143838 CCATCCGCCGTCTTCATGA 59.856 57.895 0.00 0.00 0.00 3.07
3458 3706 0.461870 CCATCCGCCGTCTTCATGAA 60.462 55.000 8.12 8.12 0.00 2.57
3459 3707 1.586422 CATCCGCCGTCTTCATGAAT 58.414 50.000 8.96 0.00 0.00 2.57
3460 3708 1.262417 CATCCGCCGTCTTCATGAATG 59.738 52.381 8.96 3.70 0.00 2.67
3461 3709 0.461870 TCCGCCGTCTTCATGAATGG 60.462 55.000 8.96 12.20 0.00 3.16
3462 3710 0.744414 CCGCCGTCTTCATGAATGGT 60.744 55.000 8.96 0.00 0.00 3.55
3463 3711 0.374758 CGCCGTCTTCATGAATGGTG 59.625 55.000 8.96 13.50 0.00 4.17
3464 3712 0.734889 GCCGTCTTCATGAATGGTGG 59.265 55.000 8.96 9.78 0.00 4.61
3465 3713 1.950484 GCCGTCTTCATGAATGGTGGT 60.950 52.381 8.96 0.00 0.00 4.16
3466 3714 1.739466 CCGTCTTCATGAATGGTGGTG 59.261 52.381 8.96 0.00 0.00 4.17
3467 3715 1.739466 CGTCTTCATGAATGGTGGTGG 59.261 52.381 8.96 0.00 0.00 4.61
3468 3716 1.474077 GTCTTCATGAATGGTGGTGGC 59.526 52.381 8.96 0.00 0.00 5.01
3469 3717 1.075212 TCTTCATGAATGGTGGTGGCA 59.925 47.619 8.96 0.00 0.00 4.92
3470 3718 1.894466 CTTCATGAATGGTGGTGGCAA 59.106 47.619 8.96 0.00 0.00 4.52
3471 3719 1.548081 TCATGAATGGTGGTGGCAAG 58.452 50.000 0.00 0.00 0.00 4.01
3472 3720 1.075212 TCATGAATGGTGGTGGCAAGA 59.925 47.619 0.00 0.00 0.00 3.02
3473 3721 1.203052 CATGAATGGTGGTGGCAAGAC 59.797 52.381 0.00 0.00 0.00 3.01
3474 3722 0.478072 TGAATGGTGGTGGCAAGACT 59.522 50.000 0.00 0.00 0.00 3.24
3475 3723 1.133513 TGAATGGTGGTGGCAAGACTT 60.134 47.619 0.00 0.00 0.00 3.01
3476 3724 1.270550 GAATGGTGGTGGCAAGACTTG 59.729 52.381 11.02 11.02 0.00 3.16
3477 3725 0.185901 ATGGTGGTGGCAAGACTTGT 59.814 50.000 16.39 0.00 0.00 3.16
3478 3726 0.751277 TGGTGGTGGCAAGACTTGTG 60.751 55.000 16.39 0.00 0.00 3.33
3479 3727 0.465460 GGTGGTGGCAAGACTTGTGA 60.465 55.000 16.39 0.94 0.00 3.58
3480 3728 1.388547 GTGGTGGCAAGACTTGTGAA 58.611 50.000 16.39 0.28 0.00 3.18
3481 3729 1.334869 GTGGTGGCAAGACTTGTGAAG 59.665 52.381 16.39 0.00 0.00 3.02
3482 3730 1.064758 TGGTGGCAAGACTTGTGAAGT 60.065 47.619 16.39 0.00 46.38 3.01
3483 3731 1.334869 GGTGGCAAGACTTGTGAAGTG 59.665 52.381 16.39 0.00 43.03 3.16
3484 3732 2.288666 GTGGCAAGACTTGTGAAGTGA 58.711 47.619 16.39 0.00 43.03 3.41
3485 3733 2.682856 GTGGCAAGACTTGTGAAGTGAA 59.317 45.455 16.39 0.00 43.03 3.18
3486 3734 2.945008 TGGCAAGACTTGTGAAGTGAAG 59.055 45.455 16.39 0.00 43.03 3.02
3487 3735 2.291741 GGCAAGACTTGTGAAGTGAAGG 59.708 50.000 16.39 0.00 43.03 3.46
3488 3736 2.287248 GCAAGACTTGTGAAGTGAAGGC 60.287 50.000 16.39 0.00 43.03 4.35
3489 3737 1.871080 AGACTTGTGAAGTGAAGGCG 58.129 50.000 0.00 0.00 43.03 5.52
3490 3738 0.235926 GACTTGTGAAGTGAAGGCGC 59.764 55.000 0.00 0.00 43.03 6.53
3491 3739 1.205064 CTTGTGAAGTGAAGGCGCG 59.795 57.895 0.00 0.00 0.00 6.86
3492 3740 2.175184 CTTGTGAAGTGAAGGCGCGG 62.175 60.000 8.83 0.00 0.00 6.46
3493 3741 2.665185 GTGAAGTGAAGGCGCGGT 60.665 61.111 8.83 0.00 0.00 5.68
3494 3742 2.357034 TGAAGTGAAGGCGCGGTC 60.357 61.111 8.83 0.88 0.00 4.79
3495 3743 2.048127 GAAGTGAAGGCGCGGTCT 60.048 61.111 8.83 0.00 0.00 3.85
3496 3744 2.048127 AAGTGAAGGCGCGGTCTC 60.048 61.111 8.83 1.89 0.00 3.36
3497 3745 2.493907 GAAGTGAAGGCGCGGTCTCT 62.494 60.000 8.83 4.46 0.00 3.10
3498 3746 2.771763 AAGTGAAGGCGCGGTCTCTG 62.772 60.000 8.83 0.00 0.00 3.35
3499 3747 2.989253 TGAAGGCGCGGTCTCTGA 60.989 61.111 8.83 0.00 0.00 3.27
3500 3748 2.507324 GAAGGCGCGGTCTCTGAC 60.507 66.667 8.83 0.00 0.00 3.51
3501 3749 4.421479 AAGGCGCGGTCTCTGACG 62.421 66.667 8.83 0.00 32.65 4.35
3503 3751 4.838486 GGCGCGGTCTCTGACGAG 62.838 72.222 8.83 0.00 38.67 4.18
3504 3752 4.838486 GCGCGGTCTCTGACGAGG 62.838 72.222 8.83 0.00 37.86 4.63
3505 3753 3.125573 CGCGGTCTCTGACGAGGA 61.126 66.667 0.00 0.00 37.86 3.71
3506 3754 2.687805 CGCGGTCTCTGACGAGGAA 61.688 63.158 0.00 0.00 37.86 3.36
3507 3755 1.137825 GCGGTCTCTGACGAGGAAG 59.862 63.158 0.00 0.00 37.86 3.46
3508 3756 1.803943 CGGTCTCTGACGAGGAAGG 59.196 63.158 0.00 0.00 37.86 3.46
3509 3757 1.658686 CGGTCTCTGACGAGGAAGGG 61.659 65.000 0.00 0.00 37.86 3.95
3510 3758 0.612453 GGTCTCTGACGAGGAAGGGT 60.612 60.000 0.00 0.00 37.86 4.34
3511 3759 1.340795 GGTCTCTGACGAGGAAGGGTA 60.341 57.143 0.00 0.00 37.86 3.69
3512 3760 2.018515 GTCTCTGACGAGGAAGGGTAG 58.981 57.143 0.00 0.00 37.86 3.18
3513 3761 1.914108 TCTCTGACGAGGAAGGGTAGA 59.086 52.381 0.00 0.00 37.86 2.59
3514 3762 2.307980 TCTCTGACGAGGAAGGGTAGAA 59.692 50.000 0.00 0.00 37.86 2.10
3515 3763 2.424246 CTCTGACGAGGAAGGGTAGAAC 59.576 54.545 0.00 0.00 33.51 3.01
3516 3764 2.168496 CTGACGAGGAAGGGTAGAACA 58.832 52.381 0.00 0.00 0.00 3.18
3517 3765 2.761208 CTGACGAGGAAGGGTAGAACAT 59.239 50.000 0.00 0.00 0.00 2.71
3518 3766 2.496070 TGACGAGGAAGGGTAGAACATG 59.504 50.000 0.00 0.00 0.00 3.21
3519 3767 1.831736 ACGAGGAAGGGTAGAACATGG 59.168 52.381 0.00 0.00 0.00 3.66
3520 3768 1.139058 CGAGGAAGGGTAGAACATGGG 59.861 57.143 0.00 0.00 0.00 4.00
3521 3769 2.478292 GAGGAAGGGTAGAACATGGGA 58.522 52.381 0.00 0.00 0.00 4.37
3522 3770 2.436173 GAGGAAGGGTAGAACATGGGAG 59.564 54.545 0.00 0.00 0.00 4.30
3523 3771 2.045885 AGGAAGGGTAGAACATGGGAGA 59.954 50.000 0.00 0.00 0.00 3.71
3524 3772 3.049344 GGAAGGGTAGAACATGGGAGAT 58.951 50.000 0.00 0.00 0.00 2.75
3525 3773 3.181450 GGAAGGGTAGAACATGGGAGATG 60.181 52.174 0.00 0.00 0.00 2.90
3526 3774 2.412591 AGGGTAGAACATGGGAGATGG 58.587 52.381 0.00 0.00 0.00 3.51
3527 3775 2.022035 AGGGTAGAACATGGGAGATGGA 60.022 50.000 0.00 0.00 0.00 3.41
3528 3776 2.104963 GGGTAGAACATGGGAGATGGAC 59.895 54.545 0.00 0.00 0.00 4.02
3529 3777 2.104963 GGTAGAACATGGGAGATGGACC 59.895 54.545 0.00 0.00 0.00 4.46
3530 3778 0.833287 AGAACATGGGAGATGGACCG 59.167 55.000 0.00 0.00 0.00 4.79
3531 3779 0.179045 GAACATGGGAGATGGACCGG 60.179 60.000 0.00 0.00 0.00 5.28
3532 3780 2.111878 CATGGGAGATGGACCGGC 59.888 66.667 0.00 0.00 0.00 6.13
3533 3781 3.171388 ATGGGAGATGGACCGGCC 61.171 66.667 0.00 4.32 37.10 6.13
3536 3784 4.176752 GGAGATGGACCGGCCCAC 62.177 72.222 13.47 6.44 39.34 4.61
3537 3785 3.083997 GAGATGGACCGGCCCACT 61.084 66.667 13.47 11.78 39.34 4.00
3538 3786 2.610859 AGATGGACCGGCCCACTT 60.611 61.111 13.47 0.00 39.34 3.16
3539 3787 2.438434 GATGGACCGGCCCACTTG 60.438 66.667 13.47 0.00 39.34 3.16
3540 3788 3.995506 GATGGACCGGCCCACTTGG 62.996 68.421 13.47 0.00 39.34 3.61
3551 3799 1.966762 CCACTTGGGACACAATGCC 59.033 57.895 0.00 0.00 39.29 4.40
3552 3800 0.540365 CCACTTGGGACACAATGCCT 60.540 55.000 0.00 0.00 40.26 4.75
3553 3801 1.331214 CACTTGGGACACAATGCCTT 58.669 50.000 0.00 0.00 40.26 4.35
3554 3802 1.000060 CACTTGGGACACAATGCCTTG 60.000 52.381 0.00 0.00 40.26 3.61
3555 3803 0.037975 CTTGGGACACAATGCCTTGC 60.038 55.000 1.19 0.00 40.26 4.01
3556 3804 1.470996 TTGGGACACAATGCCTTGCC 61.471 55.000 1.19 0.00 40.26 4.52
3557 3805 2.568090 GGACACAATGCCTTGCCG 59.432 61.111 1.19 0.00 35.69 5.69
3558 3806 2.126346 GACACAATGCCTTGCCGC 60.126 61.111 1.19 0.00 35.69 6.53
3559 3807 3.631487 GACACAATGCCTTGCCGCC 62.631 63.158 1.19 0.00 35.69 6.13
3560 3808 3.376078 CACAATGCCTTGCCGCCT 61.376 61.111 1.19 0.00 35.69 5.52
3561 3809 2.601367 ACAATGCCTTGCCGCCTT 60.601 55.556 1.19 0.00 35.69 4.35
3562 3810 2.182537 CAATGCCTTGCCGCCTTC 59.817 61.111 0.00 0.00 0.00 3.46
3563 3811 3.070576 AATGCCTTGCCGCCTTCC 61.071 61.111 0.00 0.00 0.00 3.46
3564 3812 3.884704 AATGCCTTGCCGCCTTCCA 62.885 57.895 0.00 0.00 0.00 3.53
3565 3813 3.667217 ATGCCTTGCCGCCTTCCAT 62.667 57.895 0.00 0.00 0.00 3.41
3566 3814 3.830192 GCCTTGCCGCCTTCCATG 61.830 66.667 0.00 0.00 0.00 3.66
3567 3815 3.830192 CCTTGCCGCCTTCCATGC 61.830 66.667 0.00 0.00 0.00 4.06
3568 3816 2.753043 CTTGCCGCCTTCCATGCT 60.753 61.111 0.00 0.00 0.00 3.79
3569 3817 3.060020 CTTGCCGCCTTCCATGCTG 62.060 63.158 0.00 0.00 0.00 4.41
3570 3818 3.866379 TTGCCGCCTTCCATGCTGT 62.866 57.895 0.00 0.00 0.00 4.40
3571 3819 2.124736 GCCGCCTTCCATGCTGTA 60.125 61.111 0.00 0.00 0.00 2.74
3572 3820 2.472909 GCCGCCTTCCATGCTGTAC 61.473 63.158 0.00 0.00 0.00 2.90
3573 3821 1.221840 CCGCCTTCCATGCTGTACT 59.778 57.895 0.00 0.00 0.00 2.73
3574 3822 0.811616 CCGCCTTCCATGCTGTACTC 60.812 60.000 0.00 0.00 0.00 2.59
3575 3823 0.108186 CGCCTTCCATGCTGTACTCA 60.108 55.000 0.00 0.00 0.00 3.41
3576 3824 1.473965 CGCCTTCCATGCTGTACTCAT 60.474 52.381 0.00 0.00 0.00 2.90
3577 3825 2.216898 GCCTTCCATGCTGTACTCATC 58.783 52.381 0.00 0.00 0.00 2.92
3578 3826 2.843701 CCTTCCATGCTGTACTCATCC 58.156 52.381 0.00 0.00 0.00 3.51
3579 3827 2.437281 CCTTCCATGCTGTACTCATCCT 59.563 50.000 0.00 0.00 0.00 3.24
3580 3828 3.494048 CCTTCCATGCTGTACTCATCCTC 60.494 52.174 0.00 0.00 0.00 3.71
3581 3829 1.683385 TCCATGCTGTACTCATCCTCG 59.317 52.381 0.00 0.00 0.00 4.63
3582 3830 1.269988 CCATGCTGTACTCATCCTCGG 60.270 57.143 0.00 0.00 0.00 4.63
3583 3831 1.683385 CATGCTGTACTCATCCTCGGA 59.317 52.381 0.00 0.00 0.00 4.55
3584 3832 1.393603 TGCTGTACTCATCCTCGGAG 58.606 55.000 0.00 0.00 38.36 4.63
3585 3833 0.671251 GCTGTACTCATCCTCGGAGG 59.329 60.000 18.25 18.25 36.70 4.30
3593 3841 3.998156 TCCTCGGAGGAGTTCGTG 58.002 61.111 22.70 0.00 40.06 4.35
3594 3842 1.377612 TCCTCGGAGGAGTTCGTGA 59.622 57.895 22.70 0.00 40.06 4.35
3595 3843 0.959372 TCCTCGGAGGAGTTCGTGAC 60.959 60.000 22.70 0.00 40.06 3.67
3596 3844 1.507174 CTCGGAGGAGTTCGTGACC 59.493 63.158 0.00 0.00 35.48 4.02
3597 3845 0.961358 CTCGGAGGAGTTCGTGACCT 60.961 60.000 0.00 0.00 35.48 3.85
3598 3846 1.213013 CGGAGGAGTTCGTGACCTG 59.787 63.158 0.00 0.00 33.89 4.00
3599 3847 1.524863 CGGAGGAGTTCGTGACCTGT 61.525 60.000 0.00 0.00 33.89 4.00
3600 3848 0.680061 GGAGGAGTTCGTGACCTGTT 59.320 55.000 0.00 0.00 33.89 3.16
3601 3849 1.336980 GGAGGAGTTCGTGACCTGTTC 60.337 57.143 0.00 0.00 33.89 3.18
3602 3850 0.314302 AGGAGTTCGTGACCTGTTCG 59.686 55.000 0.00 0.00 32.39 3.95
3603 3851 0.031721 GGAGTTCGTGACCTGTTCGT 59.968 55.000 0.00 0.00 0.00 3.85
3604 3852 1.406447 GAGTTCGTGACCTGTTCGTC 58.594 55.000 0.00 0.00 0.00 4.20
3605 3853 0.317603 AGTTCGTGACCTGTTCGTCG 60.318 55.000 0.00 0.00 35.40 5.12
3606 3854 1.659335 TTCGTGACCTGTTCGTCGC 60.659 57.895 0.00 0.00 39.41 5.19
3607 3855 3.103911 CGTGACCTGTTCGTCGCC 61.104 66.667 0.00 0.00 39.59 5.54
3608 3856 3.103911 GTGACCTGTTCGTCGCCG 61.104 66.667 0.00 0.00 37.31 6.46
3609 3857 4.351938 TGACCTGTTCGTCGCCGG 62.352 66.667 0.00 0.00 35.40 6.13
3610 3858 4.353437 GACCTGTTCGTCGCCGGT 62.353 66.667 1.90 0.00 33.95 5.28
3611 3859 4.657824 ACCTGTTCGTCGCCGGTG 62.658 66.667 9.28 9.28 33.95 4.94
3613 3861 4.351938 CTGTTCGTCGCCGGTGGA 62.352 66.667 16.49 3.93 33.95 4.02
3614 3862 4.651008 TGTTCGTCGCCGGTGGAC 62.651 66.667 16.49 15.78 33.95 4.02
3622 3870 4.736896 GCCGGTGGACGTGAGGTC 62.737 72.222 1.90 0.00 45.31 3.85
3630 3878 3.369381 GACGTGAGGTCCATGATGG 57.631 57.895 4.74 4.74 39.90 3.51
3631 3879 0.824109 GACGTGAGGTCCATGATGGA 59.176 55.000 10.75 10.75 45.98 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.529337 AGACTTCGCCGCATGATCAG 60.529 55.000 0.09 0.00 0.00 2.90
54 55 1.077357 ACACCAAAGGCCAACGACA 60.077 52.632 5.01 0.00 0.00 4.35
67 68 2.484065 CCGACTACCTCAAAACACACCA 60.484 50.000 0.00 0.00 0.00 4.17
256 258 8.547481 TTTTATTTTGGTTTCTTCTCCTTCCT 57.453 30.769 0.00 0.00 0.00 3.36
285 287 3.813166 GTGCCTAGTGTTAGTTTGCAGAA 59.187 43.478 0.00 0.00 0.00 3.02
372 375 9.520515 AGTCCAGTTTTGTATCAAAACATATCT 57.479 29.630 27.77 20.06 41.29 1.98
399 405 9.479549 ACAATAATCCTGGAATGACAACTTTAT 57.520 29.630 0.00 0.00 0.00 1.40
589 595 7.861629 ACAATAGGTCTTCAATGATTGGTCTA 58.138 34.615 5.20 1.85 0.00 2.59
627 633 8.939929 GCAATGATATAGATGCTTAACTTGCTA 58.060 33.333 0.00 0.00 35.93 3.49
628 634 7.664731 AGCAATGATATAGATGCTTAACTTGCT 59.335 33.333 0.00 0.00 46.36 3.91
643 649 7.067251 TGCAGATGTGACAAAAGCAATGATATA 59.933 33.333 6.71 0.00 0.00 0.86
684 698 4.261322 GCACCAATGTAGCATCAGGTTATG 60.261 45.833 4.24 0.00 0.00 1.90
685 699 3.885297 GCACCAATGTAGCATCAGGTTAT 59.115 43.478 4.24 0.00 0.00 1.89
686 700 3.054434 AGCACCAATGTAGCATCAGGTTA 60.054 43.478 4.24 0.00 0.00 2.85
703 717 3.163467 ACTAGGACCGGAATATAGCACC 58.837 50.000 9.46 0.00 0.00 5.01
725 740 4.202836 CCTCTCCTCCCTCCTTGGATTATA 60.203 50.000 0.00 0.00 38.35 0.98
895 918 2.268076 AAACGCATGTGTGGGCTCC 61.268 57.895 13.66 0.00 41.64 4.70
896 919 1.081242 CAAACGCATGTGTGGGCTC 60.081 57.895 13.66 0.00 41.64 4.70
897 920 1.106351 TTCAAACGCATGTGTGGGCT 61.106 50.000 13.66 0.00 41.64 5.19
898 921 0.664166 CTTCAAACGCATGTGTGGGC 60.664 55.000 13.66 0.00 41.64 5.36
901 924 4.094739 TCCATATCTTCAAACGCATGTGTG 59.905 41.667 13.66 1.20 34.39 3.82
968 997 3.244946 GGGCTATTATTTGAGGACCCTCC 60.245 52.174 13.10 0.00 42.09 4.30
1017 1047 1.071699 GGACACAAGCCAAGTAGGTGA 59.928 52.381 0.00 0.00 40.61 4.02
1321 1351 1.315257 GGGATGTCGCCATTGCTTGT 61.315 55.000 0.00 0.00 34.43 3.16
1416 1446 2.415010 CCCACGGCGATGAGAGAG 59.585 66.667 16.62 0.00 0.00 3.20
1972 2002 1.177895 TTCCGCTTTGGCATGAGCAA 61.178 50.000 19.27 7.73 44.61 3.91
1973 2003 1.588824 CTTCCGCTTTGGCATGAGCA 61.589 55.000 19.27 2.73 44.61 4.26
2010 2040 1.372997 GTCCTCGTTGAAGAGCGCA 60.373 57.895 11.47 0.00 36.95 6.09
2144 2186 0.810426 TGCGTGTGAAAACCAGCGTA 60.810 50.000 0.00 0.00 0.00 4.42
2145 2187 2.109739 TGCGTGTGAAAACCAGCGT 61.110 52.632 0.00 0.00 0.00 5.07
2146 2188 1.654137 GTGCGTGTGAAAACCAGCG 60.654 57.895 0.00 0.00 0.00 5.18
2147 2189 0.179150 TTGTGCGTGTGAAAACCAGC 60.179 50.000 0.00 0.00 0.00 4.85
2148 2190 2.118683 CATTGTGCGTGTGAAAACCAG 58.881 47.619 0.00 0.00 0.00 4.00
2149 2191 1.800655 GCATTGTGCGTGTGAAAACCA 60.801 47.619 0.00 0.00 31.71 3.67
2150 2192 0.852136 GCATTGTGCGTGTGAAAACC 59.148 50.000 0.00 0.00 31.71 3.27
2161 2203 4.334443 CGTCAGTATAACTTGCATTGTGC 58.666 43.478 0.00 0.00 45.29 4.57
2338 2547 0.649475 CATCGCTTCCTTCAGCTTCG 59.351 55.000 0.00 0.00 37.68 3.79
2344 2553 0.610174 ACTGAGCATCGCTTCCTTCA 59.390 50.000 0.00 0.00 39.88 3.02
2425 2659 3.727079 GCTGTTGTTGAGATCGAATGCAG 60.727 47.826 0.00 0.00 0.00 4.41
2503 2737 3.374042 TGGGTTTGGTTTTCTCACTGA 57.626 42.857 0.00 0.00 0.00 3.41
2688 2922 0.617249 AGTGCTTCTGCCTAGCTCCT 60.617 55.000 0.00 0.00 39.38 3.69
2691 2925 2.675317 CGTAAAGTGCTTCTGCCTAGCT 60.675 50.000 0.00 0.00 39.38 3.32
2737 2971 4.078516 CCCGGAAGACGTGGGGTC 62.079 72.222 0.73 0.00 46.45 4.46
3118 3352 1.211457 AGAATGATGAGGAGCCCACAC 59.789 52.381 0.00 0.00 0.00 3.82
3119 3353 1.588239 AGAATGATGAGGAGCCCACA 58.412 50.000 0.00 0.00 0.00 4.17
3120 3354 2.725221 AAGAATGATGAGGAGCCCAC 57.275 50.000 0.00 0.00 0.00 4.61
3121 3355 2.848694 AGAAAGAATGATGAGGAGCCCA 59.151 45.455 0.00 0.00 0.00 5.36
3122 3356 3.574354 AGAAAGAATGATGAGGAGCCC 57.426 47.619 0.00 0.00 0.00 5.19
3123 3357 3.882288 GGAAGAAAGAATGATGAGGAGCC 59.118 47.826 0.00 0.00 0.00 4.70
3124 3358 4.521146 TGGAAGAAAGAATGATGAGGAGC 58.479 43.478 0.00 0.00 0.00 4.70
3125 3359 6.827251 TGATTGGAAGAAAGAATGATGAGGAG 59.173 38.462 0.00 0.00 0.00 3.69
3126 3360 6.724351 TGATTGGAAGAAAGAATGATGAGGA 58.276 36.000 0.00 0.00 0.00 3.71
3127 3361 7.400599 TTGATTGGAAGAAAGAATGATGAGG 57.599 36.000 0.00 0.00 0.00 3.86
3128 3362 9.871238 ATTTTGATTGGAAGAAAGAATGATGAG 57.129 29.630 0.00 0.00 0.00 2.90
3129 3363 9.647797 CATTTTGATTGGAAGAAAGAATGATGA 57.352 29.630 0.00 0.00 0.00 2.92
3130 3364 9.431887 ACATTTTGATTGGAAGAAAGAATGATG 57.568 29.630 0.00 0.00 0.00 3.07
3131 3365 9.649167 GACATTTTGATTGGAAGAAAGAATGAT 57.351 29.630 0.00 0.00 0.00 2.45
3132 3366 8.090214 GGACATTTTGATTGGAAGAAAGAATGA 58.910 33.333 0.00 0.00 0.00 2.57
3133 3367 7.332678 GGGACATTTTGATTGGAAGAAAGAATG 59.667 37.037 0.00 0.00 0.00 2.67
3134 3368 7.016465 TGGGACATTTTGATTGGAAGAAAGAAT 59.984 33.333 0.00 0.00 0.00 2.40
3135 3369 6.326064 TGGGACATTTTGATTGGAAGAAAGAA 59.674 34.615 0.00 0.00 0.00 2.52
3136 3370 5.837979 TGGGACATTTTGATTGGAAGAAAGA 59.162 36.000 0.00 0.00 0.00 2.52
3137 3371 6.015180 TCTGGGACATTTTGATTGGAAGAAAG 60.015 38.462 0.00 0.00 38.20 2.62
3138 3372 5.837979 TCTGGGACATTTTGATTGGAAGAAA 59.162 36.000 0.00 0.00 38.20 2.52
3139 3373 5.392995 TCTGGGACATTTTGATTGGAAGAA 58.607 37.500 0.00 0.00 38.20 2.52
3140 3374 4.996793 TCTGGGACATTTTGATTGGAAGA 58.003 39.130 0.00 0.00 38.20 2.87
3141 3375 5.927281 ATCTGGGACATTTTGATTGGAAG 57.073 39.130 0.00 0.00 38.20 3.46
3142 3376 6.127366 GCTTATCTGGGACATTTTGATTGGAA 60.127 38.462 0.00 0.00 38.20 3.53
3143 3377 5.360714 GCTTATCTGGGACATTTTGATTGGA 59.639 40.000 0.00 0.00 38.20 3.53
3144 3378 5.361857 AGCTTATCTGGGACATTTTGATTGG 59.638 40.000 0.00 0.00 38.20 3.16
3145 3379 6.461110 AGCTTATCTGGGACATTTTGATTG 57.539 37.500 0.00 0.00 38.20 2.67
3146 3380 6.097412 GGAAGCTTATCTGGGACATTTTGATT 59.903 38.462 0.00 0.00 38.20 2.57
3147 3381 5.595952 GGAAGCTTATCTGGGACATTTTGAT 59.404 40.000 0.00 0.00 38.20 2.57
3148 3382 4.949856 GGAAGCTTATCTGGGACATTTTGA 59.050 41.667 0.00 0.00 38.20 2.69
3149 3383 4.098501 GGGAAGCTTATCTGGGACATTTTG 59.901 45.833 0.00 0.00 38.20 2.44
3150 3384 4.017130 AGGGAAGCTTATCTGGGACATTTT 60.017 41.667 0.00 0.00 38.20 1.82
3151 3385 3.529319 AGGGAAGCTTATCTGGGACATTT 59.471 43.478 0.00 0.00 38.20 2.32
3152 3386 3.117738 CAGGGAAGCTTATCTGGGACATT 60.118 47.826 16.51 0.00 38.20 2.71
3153 3387 2.441001 CAGGGAAGCTTATCTGGGACAT 59.559 50.000 16.51 0.00 38.20 3.06
3154 3388 1.839994 CAGGGAAGCTTATCTGGGACA 59.160 52.381 16.51 0.00 0.00 4.02
3155 3389 1.840635 ACAGGGAAGCTTATCTGGGAC 59.159 52.381 23.82 2.06 0.00 4.46
3156 3390 2.270434 ACAGGGAAGCTTATCTGGGA 57.730 50.000 23.82 0.00 0.00 4.37
3157 3391 4.503714 TTTACAGGGAAGCTTATCTGGG 57.496 45.455 23.82 8.21 0.00 4.45
3158 3392 4.336713 GCTTTTACAGGGAAGCTTATCTGG 59.663 45.833 23.82 12.30 43.69 3.86
3159 3393 4.336713 GGCTTTTACAGGGAAGCTTATCTG 59.663 45.833 20.50 20.50 45.72 2.90
3160 3394 4.527944 GGCTTTTACAGGGAAGCTTATCT 58.472 43.478 0.00 0.00 45.72 1.98
3161 3395 3.632604 GGGCTTTTACAGGGAAGCTTATC 59.367 47.826 0.00 0.00 45.72 1.75
3162 3396 3.632333 GGGCTTTTACAGGGAAGCTTAT 58.368 45.455 0.00 0.00 45.72 1.73
3163 3397 2.617021 CGGGCTTTTACAGGGAAGCTTA 60.617 50.000 0.00 0.00 45.72 3.09
3164 3398 1.886655 CGGGCTTTTACAGGGAAGCTT 60.887 52.381 0.00 0.00 45.72 3.74
3165 3399 0.322546 CGGGCTTTTACAGGGAAGCT 60.323 55.000 7.85 0.00 45.72 3.74
3166 3400 0.608308 ACGGGCTTTTACAGGGAAGC 60.608 55.000 0.00 0.00 45.72 3.86
3167 3401 1.539827 CAACGGGCTTTTACAGGGAAG 59.460 52.381 0.00 0.00 0.00 3.46
3168 3402 1.611519 CAACGGGCTTTTACAGGGAA 58.388 50.000 0.00 0.00 0.00 3.97
3169 3403 0.250989 CCAACGGGCTTTTACAGGGA 60.251 55.000 0.00 0.00 0.00 4.20
3170 3404 2.263153 CCAACGGGCTTTTACAGGG 58.737 57.895 0.00 0.00 0.00 4.45
3181 3415 0.880278 CACGGAGATATGCCAACGGG 60.880 60.000 0.00 0.00 37.18 5.28
3182 3416 1.498865 GCACGGAGATATGCCAACGG 61.499 60.000 0.00 0.00 35.73 4.44
3183 3417 1.821241 CGCACGGAGATATGCCAACG 61.821 60.000 0.00 0.00 38.69 4.10
3184 3418 0.810031 ACGCACGGAGATATGCCAAC 60.810 55.000 0.00 0.00 38.69 3.77
3185 3419 0.809636 CACGCACGGAGATATGCCAA 60.810 55.000 0.00 0.00 38.69 4.52
3186 3420 1.227234 CACGCACGGAGATATGCCA 60.227 57.895 0.00 0.00 38.69 4.92
3187 3421 0.031585 TACACGCACGGAGATATGCC 59.968 55.000 0.00 0.00 38.69 4.40
3188 3422 1.409412 CTACACGCACGGAGATATGC 58.591 55.000 0.00 0.00 38.52 3.14
3189 3423 1.269051 TGCTACACGCACGGAGATATG 60.269 52.381 0.00 0.00 45.47 1.78
3190 3424 1.029681 TGCTACACGCACGGAGATAT 58.970 50.000 0.00 0.00 45.47 1.63
3191 3425 2.484558 TGCTACACGCACGGAGATA 58.515 52.632 0.00 0.00 45.47 1.98
3192 3426 3.284336 TGCTACACGCACGGAGAT 58.716 55.556 0.00 0.00 45.47 2.75
3200 3434 1.130613 CGTGAGCTTTGCTACACGC 59.869 57.895 21.20 6.12 44.99 5.34
3202 3436 1.385743 CGTACGTGAGCTTTGCTACAC 59.614 52.381 7.22 10.07 39.88 2.90
3203 3437 1.001048 ACGTACGTGAGCTTTGCTACA 60.001 47.619 22.14 0.00 39.88 2.74
3204 3438 1.694639 ACGTACGTGAGCTTTGCTAC 58.305 50.000 22.14 0.00 39.88 3.58
3205 3439 2.743664 TCTACGTACGTGAGCTTTGCTA 59.256 45.455 30.25 5.59 39.88 3.49
3206 3440 1.538512 TCTACGTACGTGAGCTTTGCT 59.461 47.619 30.25 1.85 43.88 3.91
3207 3441 1.973138 TCTACGTACGTGAGCTTTGC 58.027 50.000 30.25 0.00 0.00 3.68
3208 3442 3.818387 TCTTCTACGTACGTGAGCTTTG 58.182 45.455 30.25 13.26 0.00 2.77
3209 3443 3.670091 GCTCTTCTACGTACGTGAGCTTT 60.670 47.826 33.66 12.79 42.28 3.51
3210 3444 2.159544 GCTCTTCTACGTACGTGAGCTT 60.160 50.000 33.66 13.41 42.28 3.74
3211 3445 1.397692 GCTCTTCTACGTACGTGAGCT 59.602 52.381 33.66 14.03 42.28 4.09
3212 3446 1.129998 TGCTCTTCTACGTACGTGAGC 59.870 52.381 34.01 34.01 44.77 4.26
3213 3447 3.677190 ATGCTCTTCTACGTACGTGAG 57.323 47.619 30.25 25.69 0.00 3.51
3214 3448 4.430137 AAATGCTCTTCTACGTACGTGA 57.570 40.909 30.25 21.07 0.00 4.35
3215 3449 5.229469 CCTAAAATGCTCTTCTACGTACGTG 59.771 44.000 30.25 19.22 0.00 4.49
3216 3450 5.338365 CCTAAAATGCTCTTCTACGTACGT 58.662 41.667 25.98 25.98 0.00 3.57
3217 3451 4.738740 CCCTAAAATGCTCTTCTACGTACG 59.261 45.833 15.01 15.01 0.00 3.67
3218 3452 5.519206 CACCCTAAAATGCTCTTCTACGTAC 59.481 44.000 0.00 0.00 0.00 3.67
3219 3453 5.186409 ACACCCTAAAATGCTCTTCTACGTA 59.814 40.000 0.00 0.00 0.00 3.57
3237 3471 1.338136 CGGAGATGCCCTTACACCCT 61.338 60.000 0.00 0.00 0.00 4.34
3256 3490 4.434713 AATAAATTTGGTGGTGAGCGTC 57.565 40.909 0.00 0.00 0.00 5.19
3289 3523 2.115291 GCTTCGATGGGAACTGGCC 61.115 63.158 0.00 0.00 0.00 5.36
3290 3524 2.115291 GGCTTCGATGGGAACTGGC 61.115 63.158 0.00 0.00 0.00 4.85
3291 3525 1.815421 CGGCTTCGATGGGAACTGG 60.815 63.158 0.00 0.00 35.61 4.00
3292 3526 1.815421 CCGGCTTCGATGGGAACTG 60.815 63.158 0.00 0.00 35.61 3.16
3295 3529 0.834612 ATAACCGGCTTCGATGGGAA 59.165 50.000 0.00 0.00 35.61 3.97
3297 3531 0.602905 GGATAACCGGCTTCGATGGG 60.603 60.000 0.00 0.00 35.61 4.00
3298 3532 0.105964 TGGATAACCGGCTTCGATGG 59.894 55.000 0.00 0.00 39.42 3.51
3299 3533 1.948104 TTGGATAACCGGCTTCGATG 58.052 50.000 0.00 0.00 39.42 3.84
3312 3560 9.919416 CCAAATATATGTGGGTATCATTGGATA 57.081 33.333 13.61 0.00 34.76 2.59
3320 3568 7.724061 ACTTGGTTCCAAATATATGTGGGTATC 59.276 37.037 20.03 10.61 35.46 2.24
3337 3585 7.384932 CCATCTGATTTGTTTAAACTTGGTTCC 59.615 37.037 18.72 3.54 0.00 3.62
3371 3619 6.988622 TTTTATGAATATCGTCCGGTTTGT 57.011 33.333 0.00 0.00 0.00 2.83
3381 3629 6.009474 CGTGCTCCGATTTTTATGAATATCG 58.991 40.000 13.63 13.63 42.54 2.92
3392 3640 1.821216 AATGACCGTGCTCCGATTTT 58.179 45.000 0.00 0.00 39.56 1.82
3395 3643 2.158957 ACAATAATGACCGTGCTCCGAT 60.159 45.455 0.00 0.00 39.56 4.18
3396 3644 1.206132 ACAATAATGACCGTGCTCCGA 59.794 47.619 0.00 0.00 39.56 4.55
3401 3649 1.472480 AGGCAACAATAATGACCGTGC 59.528 47.619 0.00 0.00 41.41 5.34
3405 3653 3.420839 CGGAAGGCAACAATAATGACC 57.579 47.619 0.00 0.00 41.41 4.02
3425 3673 4.162690 ATGGAAGAGACGGCCGCC 62.163 66.667 28.58 16.50 0.00 6.13
3426 3674 2.586357 GATGGAAGAGACGGCCGC 60.586 66.667 28.58 18.62 0.00 6.53
3427 3675 2.107141 GGATGGAAGAGACGGCCG 59.893 66.667 26.86 26.86 0.00 6.13
3428 3676 2.107141 CGGATGGAAGAGACGGCC 59.893 66.667 0.00 0.00 0.00 6.13
3429 3677 2.586357 GCGGATGGAAGAGACGGC 60.586 66.667 0.00 0.00 0.00 5.68
3430 3678 2.107141 GGCGGATGGAAGAGACGG 59.893 66.667 0.00 0.00 0.00 4.79
3431 3679 2.278857 CGGCGGATGGAAGAGACG 60.279 66.667 0.00 0.00 0.00 4.18
3432 3680 1.227002 GACGGCGGATGGAAGAGAC 60.227 63.158 13.24 0.00 0.00 3.36
3433 3681 0.970937 AAGACGGCGGATGGAAGAGA 60.971 55.000 13.24 0.00 0.00 3.10
3434 3682 0.528684 GAAGACGGCGGATGGAAGAG 60.529 60.000 13.24 0.00 0.00 2.85
3435 3683 1.254975 TGAAGACGGCGGATGGAAGA 61.255 55.000 13.24 0.00 0.00 2.87
3436 3684 0.179073 ATGAAGACGGCGGATGGAAG 60.179 55.000 13.24 0.00 0.00 3.46
3437 3685 0.461870 CATGAAGACGGCGGATGGAA 60.462 55.000 13.24 0.00 0.00 3.53
3438 3686 1.143838 CATGAAGACGGCGGATGGA 59.856 57.895 13.24 0.00 0.00 3.41
3439 3687 0.461870 TTCATGAAGACGGCGGATGG 60.462 55.000 13.24 0.00 0.00 3.51
3440 3688 1.262417 CATTCATGAAGACGGCGGATG 59.738 52.381 14.54 5.37 0.00 3.51
3441 3689 1.586422 CATTCATGAAGACGGCGGAT 58.414 50.000 14.54 0.00 0.00 4.18
3442 3690 0.461870 CCATTCATGAAGACGGCGGA 60.462 55.000 14.54 0.00 0.00 5.54
3443 3691 0.744414 ACCATTCATGAAGACGGCGG 60.744 55.000 14.54 9.23 0.00 6.13
3444 3692 0.374758 CACCATTCATGAAGACGGCG 59.625 55.000 14.54 4.80 0.00 6.46
3445 3693 0.734889 CCACCATTCATGAAGACGGC 59.265 55.000 14.54 0.00 0.00 5.68
3446 3694 1.739466 CACCACCATTCATGAAGACGG 59.261 52.381 14.54 15.45 0.00 4.79
3447 3695 1.739466 CCACCACCATTCATGAAGACG 59.261 52.381 14.54 6.02 0.00 4.18
3448 3696 1.474077 GCCACCACCATTCATGAAGAC 59.526 52.381 14.54 0.00 0.00 3.01
3449 3697 1.075212 TGCCACCACCATTCATGAAGA 59.925 47.619 14.54 0.00 0.00 2.87
3450 3698 1.548081 TGCCACCACCATTCATGAAG 58.452 50.000 14.54 3.71 0.00 3.02
3451 3699 1.894466 CTTGCCACCACCATTCATGAA 59.106 47.619 11.26 11.26 0.00 2.57
3452 3700 1.075212 TCTTGCCACCACCATTCATGA 59.925 47.619 0.00 0.00 0.00 3.07
3453 3701 1.203052 GTCTTGCCACCACCATTCATG 59.797 52.381 0.00 0.00 0.00 3.07
3454 3702 1.076024 AGTCTTGCCACCACCATTCAT 59.924 47.619 0.00 0.00 0.00 2.57
3455 3703 0.478072 AGTCTTGCCACCACCATTCA 59.522 50.000 0.00 0.00 0.00 2.57
3456 3704 1.270550 CAAGTCTTGCCACCACCATTC 59.729 52.381 0.00 0.00 0.00 2.67
3457 3705 1.331214 CAAGTCTTGCCACCACCATT 58.669 50.000 0.00 0.00 0.00 3.16
3458 3706 0.185901 ACAAGTCTTGCCACCACCAT 59.814 50.000 12.66 0.00 0.00 3.55
3459 3707 0.751277 CACAAGTCTTGCCACCACCA 60.751 55.000 12.66 0.00 0.00 4.17
3460 3708 0.465460 TCACAAGTCTTGCCACCACC 60.465 55.000 12.66 0.00 0.00 4.61
3461 3709 1.334869 CTTCACAAGTCTTGCCACCAC 59.665 52.381 12.66 0.00 0.00 4.16
3462 3710 1.064758 ACTTCACAAGTCTTGCCACCA 60.065 47.619 12.66 0.00 37.02 4.17
3463 3711 1.334869 CACTTCACAAGTCTTGCCACC 59.665 52.381 12.66 0.00 40.46 4.61
3464 3712 2.288666 TCACTTCACAAGTCTTGCCAC 58.711 47.619 12.66 0.00 40.46 5.01
3465 3713 2.708216 TCACTTCACAAGTCTTGCCA 57.292 45.000 12.66 0.00 40.46 4.92
3466 3714 2.291741 CCTTCACTTCACAAGTCTTGCC 59.708 50.000 12.66 0.00 40.46 4.52
3467 3715 2.287248 GCCTTCACTTCACAAGTCTTGC 60.287 50.000 12.66 0.00 40.46 4.01
3468 3716 2.032549 CGCCTTCACTTCACAAGTCTTG 60.033 50.000 11.17 11.17 40.46 3.02
3469 3717 2.213499 CGCCTTCACTTCACAAGTCTT 58.787 47.619 0.00 0.00 40.46 3.01
3470 3718 1.871080 CGCCTTCACTTCACAAGTCT 58.129 50.000 0.00 0.00 40.46 3.24
3471 3719 0.235926 GCGCCTTCACTTCACAAGTC 59.764 55.000 0.00 0.00 40.46 3.01
3472 3720 1.498865 CGCGCCTTCACTTCACAAGT 61.499 55.000 0.00 0.00 44.06 3.16
3473 3721 1.205064 CGCGCCTTCACTTCACAAG 59.795 57.895 0.00 0.00 0.00 3.16
3474 3722 2.250939 CCGCGCCTTCACTTCACAA 61.251 57.895 0.00 0.00 0.00 3.33
3475 3723 2.664851 CCGCGCCTTCACTTCACA 60.665 61.111 0.00 0.00 0.00 3.58
3476 3724 2.665185 ACCGCGCCTTCACTTCAC 60.665 61.111 0.00 0.00 0.00 3.18
3477 3725 2.357034 GACCGCGCCTTCACTTCA 60.357 61.111 0.00 0.00 0.00 3.02
3478 3726 2.048127 AGACCGCGCCTTCACTTC 60.048 61.111 0.00 0.00 0.00 3.01
3479 3727 2.048127 GAGACCGCGCCTTCACTT 60.048 61.111 0.00 0.00 0.00 3.16
3480 3728 2.992114 AGAGACCGCGCCTTCACT 60.992 61.111 0.00 0.00 0.00 3.41
3481 3729 2.811317 CAGAGACCGCGCCTTCAC 60.811 66.667 0.00 0.00 0.00 3.18
3482 3730 2.989253 TCAGAGACCGCGCCTTCA 60.989 61.111 0.00 0.00 0.00 3.02
3483 3731 2.507324 GTCAGAGACCGCGCCTTC 60.507 66.667 0.00 0.00 0.00 3.46
3484 3732 4.421479 CGTCAGAGACCGCGCCTT 62.421 66.667 0.00 0.00 0.00 4.35
3494 3742 2.421751 TCTACCCTTCCTCGTCAGAG 57.578 55.000 0.00 0.00 43.98 3.35
3495 3743 2.224942 TGTTCTACCCTTCCTCGTCAGA 60.225 50.000 0.00 0.00 0.00 3.27
3496 3744 2.168496 TGTTCTACCCTTCCTCGTCAG 58.832 52.381 0.00 0.00 0.00 3.51
3497 3745 2.297698 TGTTCTACCCTTCCTCGTCA 57.702 50.000 0.00 0.00 0.00 4.35
3498 3746 2.159085 CCATGTTCTACCCTTCCTCGTC 60.159 54.545 0.00 0.00 0.00 4.20
3499 3747 1.831736 CCATGTTCTACCCTTCCTCGT 59.168 52.381 0.00 0.00 0.00 4.18
3500 3748 1.139058 CCCATGTTCTACCCTTCCTCG 59.861 57.143 0.00 0.00 0.00 4.63
3501 3749 2.436173 CTCCCATGTTCTACCCTTCCTC 59.564 54.545 0.00 0.00 0.00 3.71
3502 3750 2.045885 TCTCCCATGTTCTACCCTTCCT 59.954 50.000 0.00 0.00 0.00 3.36
3503 3751 2.478292 TCTCCCATGTTCTACCCTTCC 58.522 52.381 0.00 0.00 0.00 3.46
3504 3752 3.181450 CCATCTCCCATGTTCTACCCTTC 60.181 52.174 0.00 0.00 0.00 3.46
3505 3753 2.780010 CCATCTCCCATGTTCTACCCTT 59.220 50.000 0.00 0.00 0.00 3.95
3506 3754 2.022035 TCCATCTCCCATGTTCTACCCT 60.022 50.000 0.00 0.00 0.00 4.34
3507 3755 2.104963 GTCCATCTCCCATGTTCTACCC 59.895 54.545 0.00 0.00 0.00 3.69
3508 3756 2.104963 GGTCCATCTCCCATGTTCTACC 59.895 54.545 0.00 0.00 0.00 3.18
3509 3757 2.224066 CGGTCCATCTCCCATGTTCTAC 60.224 54.545 0.00 0.00 0.00 2.59
3510 3758 2.039418 CGGTCCATCTCCCATGTTCTA 58.961 52.381 0.00 0.00 0.00 2.10
3511 3759 0.833287 CGGTCCATCTCCCATGTTCT 59.167 55.000 0.00 0.00 0.00 3.01
3512 3760 0.179045 CCGGTCCATCTCCCATGTTC 60.179 60.000 0.00 0.00 0.00 3.18
3513 3761 1.915228 CCGGTCCATCTCCCATGTT 59.085 57.895 0.00 0.00 0.00 2.71
3514 3762 2.746375 GCCGGTCCATCTCCCATGT 61.746 63.158 1.90 0.00 0.00 3.21
3515 3763 2.111878 GCCGGTCCATCTCCCATG 59.888 66.667 1.90 0.00 0.00 3.66
3516 3764 3.171388 GGCCGGTCCATCTCCCAT 61.171 66.667 1.90 0.00 34.01 4.00
3519 3767 4.176752 GTGGGCCGGTCCATCTCC 62.177 72.222 34.24 15.31 39.26 3.71
3520 3768 2.670148 AAGTGGGCCGGTCCATCTC 61.670 63.158 34.24 19.43 39.26 2.75
3521 3769 2.610859 AAGTGGGCCGGTCCATCT 60.611 61.111 34.24 25.99 39.26 2.90
3522 3770 2.438434 CAAGTGGGCCGGTCCATC 60.438 66.667 34.24 24.10 39.26 3.51
3523 3771 4.047125 CCAAGTGGGCCGGTCCAT 62.047 66.667 34.24 14.58 39.26 3.41
3533 3781 0.540365 AGGCATTGTGTCCCAAGTGG 60.540 55.000 0.00 0.00 36.25 4.00
3534 3782 1.000060 CAAGGCATTGTGTCCCAAGTG 60.000 52.381 2.19 0.00 36.25 3.16
3535 3783 1.331214 CAAGGCATTGTGTCCCAAGT 58.669 50.000 2.19 0.00 36.25 3.16
3536 3784 0.037975 GCAAGGCATTGTGTCCCAAG 60.038 55.000 13.30 0.00 38.76 3.61
3537 3785 1.470996 GGCAAGGCATTGTGTCCCAA 61.471 55.000 13.30 0.00 38.76 4.12
3538 3786 1.907807 GGCAAGGCATTGTGTCCCA 60.908 57.895 13.30 0.00 38.76 4.37
3539 3787 2.973082 GGCAAGGCATTGTGTCCC 59.027 61.111 13.30 1.17 38.76 4.46
3540 3788 2.568090 CGGCAAGGCATTGTGTCC 59.432 61.111 13.30 4.60 38.76 4.02
3541 3789 2.126346 GCGGCAAGGCATTGTGTC 60.126 61.111 13.30 2.40 38.76 3.67
3542 3790 3.683937 GGCGGCAAGGCATTGTGT 61.684 61.111 13.30 0.00 45.92 3.72
3550 3798 3.830192 GCATGGAAGGCGGCAAGG 61.830 66.667 13.08 0.00 29.35 3.61
3558 3806 2.437281 AGGATGAGTACAGCATGGAAGG 59.563 50.000 6.04 0.00 43.62 3.46
3559 3807 3.726607 GAGGATGAGTACAGCATGGAAG 58.273 50.000 6.04 0.00 43.62 3.46
3560 3808 2.101415 CGAGGATGAGTACAGCATGGAA 59.899 50.000 6.04 0.00 43.62 3.53
3561 3809 1.683385 CGAGGATGAGTACAGCATGGA 59.317 52.381 6.04 0.00 43.62 3.41
3562 3810 1.269988 CCGAGGATGAGTACAGCATGG 60.270 57.143 6.04 0.00 43.62 3.66
3563 3811 1.683385 TCCGAGGATGAGTACAGCATG 59.317 52.381 6.04 0.00 46.00 4.06
3564 3812 1.959985 CTCCGAGGATGAGTACAGCAT 59.040 52.381 0.00 0.00 33.73 3.79
3565 3813 1.393603 CTCCGAGGATGAGTACAGCA 58.606 55.000 0.00 0.00 33.73 4.41
3566 3814 0.671251 CCTCCGAGGATGAGTACAGC 59.329 60.000 9.01 0.00 37.67 4.40
3567 3815 2.226330 CTCCTCCGAGGATGAGTACAG 58.774 57.143 17.80 0.00 44.81 2.74
3568 3816 1.564818 ACTCCTCCGAGGATGAGTACA 59.435 52.381 22.71 0.00 44.81 2.90
3569 3817 2.351706 ACTCCTCCGAGGATGAGTAC 57.648 55.000 22.71 0.00 44.81 2.73
3570 3818 2.745482 CGAACTCCTCCGAGGATGAGTA 60.745 54.545 23.76 0.00 44.81 2.59
3571 3819 1.770294 GAACTCCTCCGAGGATGAGT 58.230 55.000 17.80 19.78 44.81 3.41
3572 3820 0.665835 CGAACTCCTCCGAGGATGAG 59.334 60.000 17.80 18.69 44.81 2.90
3573 3821 0.034380 ACGAACTCCTCCGAGGATGA 60.034 55.000 17.80 0.00 44.81 2.92
3574 3822 0.101399 CACGAACTCCTCCGAGGATG 59.899 60.000 17.80 13.56 44.81 3.51
3575 3823 0.034380 TCACGAACTCCTCCGAGGAT 60.034 55.000 17.80 3.77 44.81 3.24
3576 3824 0.959372 GTCACGAACTCCTCCGAGGA 60.959 60.000 16.58 16.58 43.43 3.71
3577 3825 1.507174 GTCACGAACTCCTCCGAGG 59.493 63.158 8.30 8.30 40.77 4.63
3578 3826 0.961358 AGGTCACGAACTCCTCCGAG 60.961 60.000 0.00 0.00 42.32 4.63
3579 3827 1.074423 AGGTCACGAACTCCTCCGA 59.926 57.895 0.00 0.00 0.00 4.55
3580 3828 1.213013 CAGGTCACGAACTCCTCCG 59.787 63.158 0.00 0.00 0.00 4.63
3581 3829 0.680061 AACAGGTCACGAACTCCTCC 59.320 55.000 0.00 0.00 0.00 4.30
3582 3830 1.666311 CGAACAGGTCACGAACTCCTC 60.666 57.143 0.00 0.00 0.00 3.71
3583 3831 0.314302 CGAACAGGTCACGAACTCCT 59.686 55.000 0.00 0.00 0.00 3.69
3584 3832 0.031721 ACGAACAGGTCACGAACTCC 59.968 55.000 0.00 0.00 0.00 3.85
3585 3833 1.406447 GACGAACAGGTCACGAACTC 58.594 55.000 0.00 0.00 36.91 3.01
3586 3834 0.317603 CGACGAACAGGTCACGAACT 60.318 55.000 0.00 0.00 36.73 3.01
3587 3835 1.873355 GCGACGAACAGGTCACGAAC 61.873 60.000 0.00 0.00 36.73 3.95
3588 3836 1.659335 GCGACGAACAGGTCACGAA 60.659 57.895 0.00 0.00 36.73 3.85
3589 3837 2.050714 GCGACGAACAGGTCACGA 60.051 61.111 0.00 0.00 36.73 4.35
3590 3838 3.103911 GGCGACGAACAGGTCACG 61.104 66.667 0.00 0.00 36.73 4.35
3605 3853 4.736896 GACCTCACGTCCACCGGC 62.737 72.222 0.00 0.00 42.24 6.13
3612 3860 0.824109 TCCATCATGGACCTCACGTC 59.176 55.000 0.66 0.00 42.67 4.34
3613 3861 2.990977 TCCATCATGGACCTCACGT 58.009 52.632 0.66 0.00 42.67 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.