Multiple sequence alignment - TraesCS5B01G328600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G328600 chr5B 100.000 5159 0 0 1 5159 512248644 512243486 0.000000e+00 9527.0
1 TraesCS5B01G328600 chr5B 90.250 400 25 6 4487 4882 588652762 588653151 1.280000e-140 510.0
2 TraesCS5B01G328600 chr5B 88.462 208 15 5 4922 5122 588653149 588653354 5.160000e-60 243.0
3 TraesCS5B01G328600 chr5D 88.802 2438 103 78 119 2511 424044849 424042537 0.000000e+00 2833.0
4 TraesCS5B01G328600 chr5D 89.557 1762 86 29 3411 5122 424041648 424039935 0.000000e+00 2145.0
5 TraesCS5B01G328600 chr5D 85.349 587 27 26 2752 3327 424042194 424041656 2.100000e-153 553.0
6 TraesCS5B01G328600 chr5D 83.333 120 7 7 2512 2628 424042468 424042359 1.180000e-16 99.0
7 TraesCS5B01G328600 chr5A 91.696 1975 79 36 566 2511 537636038 537634120 0.000000e+00 2660.0
8 TraesCS5B01G328600 chr5A 91.867 873 37 14 3437 4286 537633107 537632246 0.000000e+00 1188.0
9 TraesCS5B01G328600 chr5A 87.544 851 39 23 4314 5122 537632245 537631420 0.000000e+00 922.0
10 TraesCS5B01G328600 chr5A 81.630 675 54 27 2686 3339 537633840 537633215 3.590000e-136 496.0
11 TraesCS5B01G328600 chr5A 89.250 400 29 5 4487 4882 37995814 37995425 6.000000e-134 488.0
12 TraesCS5B01G328600 chr5A 87.541 305 22 7 138 436 537636406 537636112 6.400000e-89 339.0
13 TraesCS5B01G328600 chr5A 89.655 203 13 4 4927 5122 37995423 37995222 8.580000e-63 252.0
14 TraesCS5B01G328600 chr5A 79.882 338 54 10 4742 5072 537630081 537629751 8.640000e-58 235.0
15 TraesCS5B01G328600 chr5A 84.444 135 4 7 4265 4396 37995953 37995833 3.260000e-22 117.0
16 TraesCS5B01G328600 chr5A 96.610 59 1 1 3 61 537636520 537636463 4.250000e-16 97.1
17 TraesCS5B01G328600 chr5A 92.157 51 3 1 104 153 537636476 537636426 2.580000e-08 71.3
18 TraesCS5B01G328600 chr2B 90.680 397 23 6 4487 4879 539374090 539374476 2.750000e-142 516.0
19 TraesCS5B01G328600 chr2B 90.196 204 12 4 4926 5122 539374480 539374682 5.120000e-65 259.0
20 TraesCS5B01G328600 chr6B 89.950 398 26 6 4489 4882 279574412 279574799 7.710000e-138 501.0
21 TraesCS5B01G328600 chr6B 89.500 400 28 5 4487 4882 581866011 581865622 1.290000e-135 494.0
22 TraesCS5B01G328600 chr6B 89.423 208 13 5 4922 5122 279574797 279575002 2.380000e-63 254.0
23 TraesCS5B01G328600 chr6B 88.462 208 14 6 4922 5122 581865624 581865420 5.160000e-60 243.0
24 TraesCS5B01G328600 chr6B 87.156 109 6 3 4287 4393 279574286 279574388 3.260000e-22 117.0
25 TraesCS5B01G328600 chr6B 84.444 135 4 7 4265 4396 581866150 581866030 3.260000e-22 117.0
26 TraesCS5B01G328600 chr1B 90.000 150 7 4 4980 5122 60968465 60968317 2.450000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G328600 chr5B 512243486 512248644 5158 True 9527.000000 9527 100.000000 1 5159 1 chr5B.!!$R1 5158
1 TraesCS5B01G328600 chr5B 588652762 588653354 592 False 376.500000 510 89.356000 4487 5122 2 chr5B.!!$F1 635
2 TraesCS5B01G328600 chr5D 424039935 424044849 4914 True 1407.500000 2833 86.760250 119 5122 4 chr5D.!!$R1 5003
3 TraesCS5B01G328600 chr5A 537629751 537636520 6769 True 751.050000 2660 88.615875 3 5122 8 chr5A.!!$R2 5119
4 TraesCS5B01G328600 chr5A 37995222 37995953 731 True 285.666667 488 87.783000 4265 5122 3 chr5A.!!$R1 857
5 TraesCS5B01G328600 chr2B 539374090 539374682 592 False 387.500000 516 90.438000 4487 5122 2 chr2B.!!$F1 635
6 TraesCS5B01G328600 chr6B 279574286 279575002 716 False 290.666667 501 88.843000 4287 5122 3 chr6B.!!$F1 835
7 TraesCS5B01G328600 chr6B 581865420 581866150 730 True 284.666667 494 87.468667 4265 5122 3 chr6B.!!$R1 857

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 615 0.179127 CACAGTCTCGCCGTGATGAT 60.179 55.0 0.00 0.00 32.23 2.45 F
984 1069 0.183252 AGGTAGTAGGCTCGAGACCC 59.817 60.0 16.58 8.72 0.00 4.46 F
2251 2342 0.310854 CTCGCCGCCATTAATTTCCC 59.689 55.0 0.00 0.00 0.00 3.97 F
2631 2806 0.107831 AAGTAGACGGCAAAGTGGCA 59.892 50.0 0.00 0.00 43.94 4.92 F
3390 3642 0.252789 TACATTTGGGGACGGAGGGA 60.253 55.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2405 2497 0.231279 CGCCGTCCATGCGTTTATAC 59.769 55.0 0.0 0.0 46.59 1.47 R
2615 2783 0.107831 AACTGCCACTTTGCCGTCTA 59.892 50.0 0.0 0.0 0.00 2.59 R
3374 3626 0.043637 TACTCCCTCCGTCCCCAAAT 59.956 55.0 0.0 0.0 0.00 2.32 R
3603 3917 0.251165 TAGGTTGCAAAGACAGGCCC 60.251 55.0 0.0 0.0 0.00 5.80 R
4763 5144 0.322975 CACAGTCACTCCTTCCCTGG 59.677 60.0 0.0 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.095021 CCCTAAACTCTAAGCCATAAAACCAC 59.905 42.308 0.00 0.00 0.00 4.16
61 62 7.519002 GTCGTTGGCAATATCATTTAGATACC 58.481 38.462 1.92 0.00 41.81 2.73
62 63 7.387948 GTCGTTGGCAATATCATTTAGATACCT 59.612 37.037 1.92 0.00 41.81 3.08
63 64 7.936847 TCGTTGGCAATATCATTTAGATACCTT 59.063 33.333 1.92 0.00 41.81 3.50
64 65 8.567948 CGTTGGCAATATCATTTAGATACCTTT 58.432 33.333 1.92 0.00 41.81 3.11
90 91 8.948631 TTTTTGAATTTGTATTGCTTACCACA 57.051 26.923 0.00 0.00 0.00 4.17
91 92 9.553064 TTTTTGAATTTGTATTGCTTACCACAT 57.447 25.926 0.00 0.00 0.00 3.21
92 93 8.755696 TTTGAATTTGTATTGCTTACCACATC 57.244 30.769 0.00 0.00 0.00 3.06
93 94 7.701539 TGAATTTGTATTGCTTACCACATCT 57.298 32.000 0.00 0.00 0.00 2.90
94 95 7.537715 TGAATTTGTATTGCTTACCACATCTG 58.462 34.615 0.00 0.00 0.00 2.90
95 96 7.176515 TGAATTTGTATTGCTTACCACATCTGT 59.823 33.333 0.00 0.00 0.00 3.41
96 97 6.494893 TTTGTATTGCTTACCACATCTGTC 57.505 37.500 0.00 0.00 0.00 3.51
97 98 5.159273 TGTATTGCTTACCACATCTGTCA 57.841 39.130 0.00 0.00 0.00 3.58
98 99 4.935205 TGTATTGCTTACCACATCTGTCAC 59.065 41.667 0.00 0.00 0.00 3.67
99 100 2.472695 TGCTTACCACATCTGTCACC 57.527 50.000 0.00 0.00 0.00 4.02
100 101 1.977854 TGCTTACCACATCTGTCACCT 59.022 47.619 0.00 0.00 0.00 4.00
101 102 2.289631 TGCTTACCACATCTGTCACCTG 60.290 50.000 0.00 0.00 0.00 4.00
102 103 2.936993 GCTTACCACATCTGTCACCTGG 60.937 54.545 0.00 0.00 0.00 4.45
103 104 2.024176 TACCACATCTGTCACCTGGT 57.976 50.000 0.00 0.00 0.00 4.00
104 105 2.024176 ACCACATCTGTCACCTGGTA 57.976 50.000 0.00 0.00 0.00 3.25
105 106 2.551270 ACCACATCTGTCACCTGGTAT 58.449 47.619 0.00 0.00 0.00 2.73
106 107 3.719871 ACCACATCTGTCACCTGGTATA 58.280 45.455 0.00 0.00 0.00 1.47
107 108 4.298626 ACCACATCTGTCACCTGGTATAT 58.701 43.478 0.00 0.00 0.00 0.86
108 109 4.721776 ACCACATCTGTCACCTGGTATATT 59.278 41.667 0.00 0.00 0.00 1.28
109 110 5.191722 ACCACATCTGTCACCTGGTATATTT 59.808 40.000 0.00 0.00 0.00 1.40
110 111 6.385759 ACCACATCTGTCACCTGGTATATTTA 59.614 38.462 0.00 0.00 0.00 1.40
111 112 6.931281 CCACATCTGTCACCTGGTATATTTAG 59.069 42.308 0.00 0.00 0.00 1.85
112 113 7.202001 CCACATCTGTCACCTGGTATATTTAGA 60.202 40.741 0.00 0.00 0.00 2.10
113 114 8.370940 CACATCTGTCACCTGGTATATTTAGAT 58.629 37.037 0.00 1.13 0.00 1.98
114 115 9.601810 ACATCTGTCACCTGGTATATTTAGATA 57.398 33.333 0.00 0.00 0.00 1.98
214 257 4.218417 GCAATGGCCCTAAACATACATAGG 59.782 45.833 0.00 0.00 38.74 2.57
244 287 7.308770 CGGTCTCGGTATAGTAATATGGTCAAA 60.309 40.741 0.00 0.00 0.00 2.69
247 290 6.996509 TCGGTATAGTAATATGGTCAAACCC 58.003 40.000 0.00 0.00 37.50 4.11
268 311 5.221864 ACCCAAGTTATTCCCGATAAGGATC 60.222 44.000 0.00 0.00 45.00 3.36
288 332 6.876257 AGGATCGAGTATATTTGCCATCTTTC 59.124 38.462 0.00 0.00 0.00 2.62
289 333 6.876257 GGATCGAGTATATTTGCCATCTTTCT 59.124 38.462 0.00 0.00 0.00 2.52
292 336 6.925718 TCGAGTATATTTGCCATCTTTCTCAG 59.074 38.462 0.00 0.00 0.00 3.35
321 365 2.288763 ACCAACATCCAACCATTTTCGC 60.289 45.455 0.00 0.00 0.00 4.70
338 382 1.384191 GCCCCAACCTCACTCCATT 59.616 57.895 0.00 0.00 0.00 3.16
354 398 5.975344 CACTCCATTATTCATGTACGTACGT 59.025 40.000 25.98 25.98 0.00 3.57
355 399 7.012232 TCACTCCATTATTCATGTACGTACGTA 59.988 37.037 23.60 23.60 0.00 3.57
402 446 0.956410 CACCCCGCCAAATACAACGA 60.956 55.000 0.00 0.00 0.00 3.85
446 495 7.047460 AGAAAAACTGATGAAACAGCTGATT 57.953 32.000 23.35 16.10 41.06 2.57
449 498 6.506500 AAACTGATGAAACAGCTGATTAGG 57.493 37.500 23.35 6.53 41.06 2.69
451 500 5.564550 ACTGATGAAACAGCTGATTAGGTT 58.435 37.500 23.35 0.00 41.06 3.50
452 501 5.413833 ACTGATGAAACAGCTGATTAGGTTG 59.586 40.000 23.35 8.60 41.06 3.77
470 520 3.285745 GTTGAAAGAAAACGGCAGTACG 58.714 45.455 0.00 0.00 40.31 3.67
501 551 8.788813 GTTCACGTCATCATCACAAAATTAATC 58.211 33.333 0.00 0.00 0.00 1.75
504 554 8.577939 CACGTCATCATCACAAAATTAATCAAC 58.422 33.333 0.00 0.00 0.00 3.18
505 555 8.296000 ACGTCATCATCACAAAATTAATCAACA 58.704 29.630 0.00 0.00 0.00 3.33
508 558 9.642327 TCATCATCACAAAATTAATCAACAAGG 57.358 29.630 0.00 0.00 0.00 3.61
510 560 7.385267 TCATCACAAAATTAATCAACAAGGGG 58.615 34.615 0.00 0.00 0.00 4.79
511 561 6.985653 TCACAAAATTAATCAACAAGGGGA 57.014 33.333 0.00 0.00 0.00 4.81
512 562 7.366847 TCACAAAATTAATCAACAAGGGGAA 57.633 32.000 0.00 0.00 0.00 3.97
513 563 7.796054 TCACAAAATTAATCAACAAGGGGAAA 58.204 30.769 0.00 0.00 0.00 3.13
514 564 8.267894 TCACAAAATTAATCAACAAGGGGAAAA 58.732 29.630 0.00 0.00 0.00 2.29
515 565 9.065798 CACAAAATTAATCAACAAGGGGAAAAT 57.934 29.630 0.00 0.00 0.00 1.82
516 566 9.283768 ACAAAATTAATCAACAAGGGGAAAATC 57.716 29.630 0.00 0.00 0.00 2.17
517 567 8.729756 CAAAATTAATCAACAAGGGGAAAATCC 58.270 33.333 0.00 0.00 35.23 3.01
563 615 0.179127 CACAGTCTCGCCGTGATGAT 60.179 55.000 0.00 0.00 32.23 2.45
574 626 1.016627 CGTGATGATTCCGTGCCAAT 58.983 50.000 0.00 0.00 0.00 3.16
576 628 2.221749 CGTGATGATTCCGTGCCAATAG 59.778 50.000 0.00 0.00 0.00 1.73
577 629 3.206150 GTGATGATTCCGTGCCAATAGT 58.794 45.455 0.00 0.00 0.00 2.12
578 630 3.248602 GTGATGATTCCGTGCCAATAGTC 59.751 47.826 0.00 0.00 0.00 2.59
579 631 1.934589 TGATTCCGTGCCAATAGTCG 58.065 50.000 0.00 0.00 0.00 4.18
581 633 0.814010 ATTCCGTGCCAATAGTCGCC 60.814 55.000 0.00 0.00 0.00 5.54
582 634 3.261951 CCGTGCCAATAGTCGCCG 61.262 66.667 0.00 0.00 0.00 6.46
599 659 1.062587 GCCGGATTCACTGTCAATTCG 59.937 52.381 5.05 0.00 32.79 3.34
680 746 1.078709 CGTCAATGCGACAATGTCCT 58.921 50.000 7.91 0.00 45.70 3.85
734 808 3.775654 CGTGTCTCCCCCTGCCTC 61.776 72.222 0.00 0.00 0.00 4.70
756 831 3.506067 CCCTATAAAATCAACCGCCATCC 59.494 47.826 0.00 0.00 0.00 3.51
773 848 1.223763 CCTCCTCGCTAAAACCCCC 59.776 63.158 0.00 0.00 0.00 5.40
797 872 3.006112 TCTCATCTTAGCGTGACCTCT 57.994 47.619 0.00 0.00 0.00 3.69
944 1029 2.729491 GACGCGGCCAAAGCAAAC 60.729 61.111 12.47 0.00 42.56 2.93
945 1030 3.477224 GACGCGGCCAAAGCAAACA 62.477 57.895 12.47 0.00 42.56 2.83
947 1032 2.417097 GCGGCCAAAGCAAACAGT 59.583 55.556 2.24 0.00 42.56 3.55
948 1033 1.950630 GCGGCCAAAGCAAACAGTG 60.951 57.895 2.24 0.00 42.56 3.66
949 1034 1.437160 CGGCCAAAGCAAACAGTGT 59.563 52.632 2.24 0.00 42.56 3.55
950 1035 0.665835 CGGCCAAAGCAAACAGTGTA 59.334 50.000 2.24 0.00 42.56 2.90
951 1036 1.334960 CGGCCAAAGCAAACAGTGTAG 60.335 52.381 2.24 0.00 42.56 2.74
952 1037 1.953686 GGCCAAAGCAAACAGTGTAGA 59.046 47.619 0.00 0.00 42.56 2.59
974 1059 2.371510 AGGAGCCGTAGTAGGTAGTAGG 59.628 54.545 0.00 0.00 0.00 3.18
975 1060 2.150390 GAGCCGTAGTAGGTAGTAGGC 58.850 57.143 0.00 0.00 43.07 3.93
976 1061 2.268762 GCCGTAGTAGGTAGTAGGCT 57.731 55.000 0.00 0.00 39.92 4.58
977 1062 2.150390 GCCGTAGTAGGTAGTAGGCTC 58.850 57.143 0.00 0.00 39.92 4.70
978 1063 2.411904 CCGTAGTAGGTAGTAGGCTCG 58.588 57.143 0.00 0.00 0.00 5.03
979 1064 2.036475 CCGTAGTAGGTAGTAGGCTCGA 59.964 54.545 0.00 0.00 0.00 4.04
980 1065 3.316283 CGTAGTAGGTAGTAGGCTCGAG 58.684 54.545 8.45 8.45 0.00 4.04
981 1066 3.005261 CGTAGTAGGTAGTAGGCTCGAGA 59.995 52.174 18.75 0.00 0.00 4.04
982 1067 3.473923 AGTAGGTAGTAGGCTCGAGAC 57.526 52.381 18.75 15.26 0.00 3.36
984 1069 0.183252 AGGTAGTAGGCTCGAGACCC 59.817 60.000 16.58 8.72 0.00 4.46
986 1071 0.463474 GTAGTAGGCTCGAGACCCGT 60.463 60.000 16.58 1.27 39.75 5.28
1149 1234 4.101448 ACGCTCATGGGCCTCACC 62.101 66.667 13.12 0.00 37.93 4.02
1308 1393 2.801162 CAGTGGCTCGTCGTGTCG 60.801 66.667 0.00 0.00 0.00 4.35
1318 1403 1.449048 TCGTCGTGTCGAAAACAATCG 59.551 47.619 0.00 0.00 40.31 3.34
1758 1843 3.112709 GTCTTCGTGGCCGTGCTC 61.113 66.667 0.00 0.00 35.01 4.26
1809 1894 2.048503 GCGTACGTTGGCTGGACT 60.049 61.111 17.90 0.00 0.00 3.85
1886 1971 2.817396 GCTGCTCGACTCCAAGGC 60.817 66.667 0.00 0.00 0.00 4.35
1922 2013 4.021925 GCAGGGCAACGGAGAGGT 62.022 66.667 0.00 0.00 37.60 3.85
1932 2023 3.151022 GGAGAGGTGGAGGAGGCG 61.151 72.222 0.00 0.00 0.00 5.52
2017 2108 0.390472 GGACTTCTGGGTGCTCTTCG 60.390 60.000 0.00 0.00 0.00 3.79
2145 2236 1.604378 CATCTGGGGCTTCTTCGGT 59.396 57.895 0.00 0.00 0.00 4.69
2193 2284 2.921754 GCGCTTCATCAAGTACGTTACT 59.078 45.455 0.00 0.00 41.73 2.24
2194 2285 4.100529 GCGCTTCATCAAGTACGTTACTA 58.899 43.478 0.00 0.00 38.26 1.82
2196 2287 5.330295 CGCTTCATCAAGTACGTTACTACT 58.670 41.667 0.00 0.00 38.26 2.57
2198 2289 6.963242 CGCTTCATCAAGTACGTTACTACTAA 59.037 38.462 0.00 0.00 38.26 2.24
2201 2292 8.970691 TTCATCAAGTACGTTACTACTAAACC 57.029 34.615 0.00 0.00 38.26 3.27
2202 2293 8.109705 TCATCAAGTACGTTACTACTAAACCA 57.890 34.615 0.00 0.00 38.26 3.67
2203 2294 8.239314 TCATCAAGTACGTTACTACTAAACCAG 58.761 37.037 0.00 0.00 38.26 4.00
2207 2298 7.371126 AGTACGTTACTACTAAACCAGTCTC 57.629 40.000 0.00 0.00 38.80 3.36
2208 2299 5.635417 ACGTTACTACTAAACCAGTCTCC 57.365 43.478 0.00 0.00 38.80 3.71
2209 2300 5.320277 ACGTTACTACTAAACCAGTCTCCT 58.680 41.667 0.00 0.00 38.80 3.69
2248 2339 0.814457 TTGCTCGCCGCCATTAATTT 59.186 45.000 0.00 0.00 38.05 1.82
2251 2342 0.310854 CTCGCCGCCATTAATTTCCC 59.689 55.000 0.00 0.00 0.00 3.97
2253 2344 0.744281 CGCCGCCATTAATTTCCCTT 59.256 50.000 0.00 0.00 0.00 3.95
2254 2345 1.535860 CGCCGCCATTAATTTCCCTTG 60.536 52.381 0.00 0.00 0.00 3.61
2255 2346 1.806247 GCCGCCATTAATTTCCCTTGC 60.806 52.381 0.00 0.00 0.00 4.01
2256 2347 1.202521 CCGCCATTAATTTCCCTTGCC 60.203 52.381 0.00 0.00 0.00 4.52
2257 2348 1.535860 CGCCATTAATTTCCCTTGCCG 60.536 52.381 0.00 0.00 0.00 5.69
2259 2350 1.756538 CCATTAATTTCCCTTGCCGCT 59.243 47.619 0.00 0.00 0.00 5.52
2261 2352 3.243401 CCATTAATTTCCCTTGCCGCTAC 60.243 47.826 0.00 0.00 0.00 3.58
2262 2353 1.658994 TAATTTCCCTTGCCGCTACG 58.341 50.000 0.00 0.00 0.00 3.51
2309 2400 2.657237 CGGATCTGGGGCCGTATC 59.343 66.667 0.00 0.00 42.49 2.24
2310 2401 2.207229 CGGATCTGGGGCCGTATCA 61.207 63.158 11.88 0.00 42.49 2.15
2311 2402 1.754380 CGGATCTGGGGCCGTATCAA 61.754 60.000 11.88 0.00 42.49 2.57
2379 2470 2.549282 CGTGAACGTTCTTGGCCG 59.451 61.111 27.32 17.02 34.11 6.13
2393 2485 6.399564 CGTTCTTGGCCGAAAATCAAATAAAC 60.400 38.462 0.00 0.00 0.00 2.01
2459 2551 3.181499 GGCTGTTGCTTTCAGATGAGATG 60.181 47.826 7.35 0.00 39.59 2.90
2464 2556 5.708697 TGTTGCTTTCAGATGAGATGAATGT 59.291 36.000 0.00 0.00 36.60 2.71
2516 2681 9.932207 ACAAGAGATCTGAGATGAATGATTATC 57.068 33.333 0.00 0.00 0.00 1.75
2547 2712 7.824289 GCATATTCTATCTTAAGCACCACCATA 59.176 37.037 0.00 0.00 0.00 2.74
2548 2713 9.155975 CATATTCTATCTTAAGCACCACCATAC 57.844 37.037 0.00 0.00 0.00 2.39
2549 2714 6.808321 TTCTATCTTAAGCACCACCATACT 57.192 37.500 0.00 0.00 0.00 2.12
2550 2715 7.907841 TTCTATCTTAAGCACCACCATACTA 57.092 36.000 0.00 0.00 0.00 1.82
2551 2716 7.286215 TCTATCTTAAGCACCACCATACTAC 57.714 40.000 0.00 0.00 0.00 2.73
2552 2717 7.067421 TCTATCTTAAGCACCACCATACTACT 58.933 38.462 0.00 0.00 0.00 2.57
2553 2718 8.222637 TCTATCTTAAGCACCACCATACTACTA 58.777 37.037 0.00 0.00 0.00 1.82
2554 2719 6.710597 TCTTAAGCACCACCATACTACTAG 57.289 41.667 0.00 0.00 0.00 2.57
2555 2720 6.192773 TCTTAAGCACCACCATACTACTAGT 58.807 40.000 0.00 0.00 0.00 2.57
2615 2783 3.259876 TGGTGGTATCTTAAGCACGAAGT 59.740 43.478 0.00 0.00 46.38 3.01
2631 2806 0.107831 AAGTAGACGGCAAAGTGGCA 59.892 50.000 0.00 0.00 43.94 4.92
2632 2807 0.320771 AGTAGACGGCAAAGTGGCAG 60.321 55.000 0.00 0.00 43.94 4.85
2633 2808 0.602905 GTAGACGGCAAAGTGGCAGT 60.603 55.000 0.00 0.00 43.94 4.40
2676 2881 2.359570 AAAGACGTTCACCGACGCCT 62.360 55.000 0.00 0.00 46.47 5.52
2692 2916 4.618912 CGACGCCTCAGATATATTCAACAG 59.381 45.833 0.00 0.00 0.00 3.16
2702 2926 6.370994 CAGATATATTCAACAGAGTGATGCCC 59.629 42.308 0.00 0.00 0.00 5.36
2730 2954 6.829229 AAGTTAAAGAAAAATACTCCCGGG 57.171 37.500 16.85 16.85 0.00 5.73
2732 2956 5.014438 AGTTAAAGAAAAATACTCCCGGGGA 59.986 40.000 23.50 16.55 0.00 4.81
2740 2964 4.295407 CTCCCGGGGAGCATAGAA 57.705 61.111 29.32 0.00 43.29 2.10
2769 2993 2.578786 CAGTGGGGGACTTTTTAACGT 58.421 47.619 0.00 0.00 29.75 3.99
2771 2995 4.136051 CAGTGGGGGACTTTTTAACGTAA 58.864 43.478 0.00 0.00 29.75 3.18
2772 2996 4.023792 CAGTGGGGGACTTTTTAACGTAAC 60.024 45.833 0.00 0.00 29.75 2.50
2773 2997 3.058983 GTGGGGGACTTTTTAACGTAACG 60.059 47.826 0.00 0.00 0.00 3.18
2774 2998 2.483877 GGGGGACTTTTTAACGTAACGG 59.516 50.000 0.00 0.00 0.00 4.44
2776 3000 4.002982 GGGGACTTTTTAACGTAACGGAT 58.997 43.478 0.00 0.00 0.00 4.18
2780 3004 7.308288 GGGGACTTTTTAACGTAACGGATAAAA 60.308 37.037 0.00 0.00 33.77 1.52
2782 3006 8.067189 GGACTTTTTAACGTAACGGATAAAACA 58.933 33.333 0.00 0.00 34.59 2.83
2783 3007 9.432077 GACTTTTTAACGTAACGGATAAAACAA 57.568 29.630 0.00 0.00 34.59 2.83
2784 3008 9.437045 ACTTTTTAACGTAACGGATAAAACAAG 57.563 29.630 0.00 0.00 34.59 3.16
2785 3009 7.834821 TTTTAACGTAACGGATAAAACAAGC 57.165 32.000 0.00 0.00 32.14 4.01
2786 3010 4.408993 AACGTAACGGATAAAACAAGCC 57.591 40.909 0.00 0.00 0.00 4.35
2787 3011 2.743664 ACGTAACGGATAAAACAAGCCC 59.256 45.455 0.00 0.00 0.00 5.19
2788 3012 3.004862 CGTAACGGATAAAACAAGCCCT 58.995 45.455 0.00 0.00 0.00 5.19
2789 3013 3.181514 CGTAACGGATAAAACAAGCCCTG 60.182 47.826 0.00 0.00 0.00 4.45
2790 3014 1.834188 ACGGATAAAACAAGCCCTGG 58.166 50.000 0.00 0.00 0.00 4.45
2791 3015 1.102978 CGGATAAAACAAGCCCTGGG 58.897 55.000 8.86 8.86 0.00 4.45
2792 3016 1.340600 CGGATAAAACAAGCCCTGGGA 60.341 52.381 19.27 0.00 0.00 4.37
2894 3118 1.942657 GTGTATGCAGTGTATGGGCAG 59.057 52.381 3.69 0.00 41.40 4.85
2898 3122 1.454479 GCAGTGTATGGGCAGGCAT 60.454 57.895 0.00 0.00 0.00 4.40
2899 3123 1.731433 GCAGTGTATGGGCAGGCATG 61.731 60.000 0.00 0.00 0.00 4.06
2952 3176 4.170723 CGTCCCTTTCACGCTCTC 57.829 61.111 0.00 0.00 0.00 3.20
2953 3177 1.587054 CGTCCCTTTCACGCTCTCT 59.413 57.895 0.00 0.00 0.00 3.10
2957 3181 3.660865 GTCCCTTTCACGCTCTCTTTTA 58.339 45.455 0.00 0.00 0.00 1.52
3021 3263 6.397272 TGGCCAATTCTGTTTGTTTCATATC 58.603 36.000 0.61 0.00 0.00 1.63
3032 3279 6.932400 TGTTTGTTTCATATCGGTTCAGTACT 59.068 34.615 0.00 0.00 0.00 2.73
3033 3280 7.442969 TGTTTGTTTCATATCGGTTCAGTACTT 59.557 33.333 0.00 0.00 0.00 2.24
3034 3281 7.591006 TTGTTTCATATCGGTTCAGTACTTC 57.409 36.000 0.00 0.00 0.00 3.01
3035 3282 6.693466 TGTTTCATATCGGTTCAGTACTTCA 58.307 36.000 0.00 0.00 0.00 3.02
3036 3283 6.811665 TGTTTCATATCGGTTCAGTACTTCAG 59.188 38.462 0.00 0.00 0.00 3.02
3037 3284 6.525578 TTCATATCGGTTCAGTACTTCAGT 57.474 37.500 0.00 0.00 0.00 3.41
3038 3285 6.525578 TCATATCGGTTCAGTACTTCAGTT 57.474 37.500 0.00 0.00 0.00 3.16
3039 3286 6.330278 TCATATCGGTTCAGTACTTCAGTTG 58.670 40.000 0.00 0.00 0.00 3.16
3040 3287 4.866508 ATCGGTTCAGTACTTCAGTTGA 57.133 40.909 0.00 0.00 0.00 3.18
3041 3288 4.238761 TCGGTTCAGTACTTCAGTTGAG 57.761 45.455 0.00 0.00 0.00 3.02
3042 3289 3.635373 TCGGTTCAGTACTTCAGTTGAGT 59.365 43.478 0.00 0.00 0.00 3.41
3065 3312 3.577415 AGTAGTAGGTGGTGGTTTCTCAC 59.423 47.826 0.00 0.00 36.95 3.51
3100 3347 2.254546 TGAATCGTGCCTCAACTTGT 57.745 45.000 0.00 0.00 0.00 3.16
3165 3412 5.862678 TTTATTAATGTAAGCAAGGGGGC 57.137 39.130 0.00 0.00 0.00 5.80
3233 3483 5.234329 TGTCACATTCTGAAAAGAACTCGTC 59.766 40.000 0.00 0.00 0.00 4.20
3249 3499 4.489810 ACTCGTCAAGTTCAGATTGCTAG 58.510 43.478 0.00 0.00 33.03 3.42
3255 3505 7.067129 TCGTCAAGTTCAGATTGCTAGTAGTAT 59.933 37.037 0.00 0.00 0.00 2.12
3314 3566 7.822822 GGTGTAGTAGTATTGTCCAAGTCAATT 59.177 37.037 0.00 0.00 36.92 2.32
3380 3632 8.576442 AGTATGAAAAAGTGTCTTACATTTGGG 58.424 33.333 0.00 0.00 31.19 4.12
3381 3633 6.155475 TGAAAAAGTGTCTTACATTTGGGG 57.845 37.500 0.00 0.00 31.19 4.96
3382 3634 5.894393 TGAAAAAGTGTCTTACATTTGGGGA 59.106 36.000 0.00 0.00 31.19 4.81
3383 3635 5.784578 AAAAGTGTCTTACATTTGGGGAC 57.215 39.130 0.00 0.00 29.74 4.46
3384 3636 3.053831 AGTGTCTTACATTTGGGGACG 57.946 47.619 0.00 0.00 0.00 4.79
3385 3637 2.081462 GTGTCTTACATTTGGGGACGG 58.919 52.381 0.00 0.00 0.00 4.79
3386 3638 1.979308 TGTCTTACATTTGGGGACGGA 59.021 47.619 0.00 0.00 0.00 4.69
3387 3639 2.027561 TGTCTTACATTTGGGGACGGAG 60.028 50.000 0.00 0.00 0.00 4.63
3388 3640 1.557832 TCTTACATTTGGGGACGGAGG 59.442 52.381 0.00 0.00 0.00 4.30
3389 3641 0.621609 TTACATTTGGGGACGGAGGG 59.378 55.000 0.00 0.00 0.00 4.30
3390 3642 0.252789 TACATTTGGGGACGGAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
3391 3643 1.224592 CATTTGGGGACGGAGGGAG 59.775 63.158 0.00 0.00 0.00 4.30
3398 3650 1.397672 GGGACGGAGGGAGTAGTAAC 58.602 60.000 0.00 0.00 0.00 2.50
3407 3659 4.470304 GGAGGGAGTAGTAACCTGTTCATT 59.530 45.833 0.00 0.00 34.02 2.57
3431 3683 3.857157 TTTTCTGGCACTGTCTAACCT 57.143 42.857 0.00 0.00 0.00 3.50
3435 3742 2.556286 GGCACTGTCTAACCTTGCC 58.444 57.895 0.00 0.00 45.64 4.52
3467 3774 5.679734 TCACTGACTGATTTTCTTGCTTC 57.320 39.130 0.00 0.00 0.00 3.86
3607 3921 9.125026 CCAAAGTGAATATATATAATGAGGGCC 57.875 37.037 0.00 0.00 0.00 5.80
3608 3922 9.911788 CAAAGTGAATATATATAATGAGGGCCT 57.088 33.333 5.25 5.25 0.00 5.19
3609 3923 9.911788 AAAGTGAATATATATAATGAGGGCCTG 57.088 33.333 12.95 0.00 0.00 4.85
3630 3944 6.173339 CCTGTCTTTGCAACCTAATCTCTTA 58.827 40.000 0.00 0.00 0.00 2.10
3634 3948 9.733556 TGTCTTTGCAACCTAATCTCTTAATTA 57.266 29.630 0.00 0.00 0.00 1.40
3648 3987 7.849804 TCTCTTAATTAATTCTGACACTGCC 57.150 36.000 3.39 0.00 0.00 4.85
3660 3999 1.792949 GACACTGCCTAACGTTGTGAG 59.207 52.381 19.06 6.19 33.41 3.51
4068 4408 2.125552 TTCGGCCTCGATGTGCTG 60.126 61.111 0.00 4.63 45.51 4.41
4211 4551 2.180131 GAAACTCAGCTGGCTGCACG 62.180 60.000 18.84 9.11 45.94 5.34
4252 4596 5.469421 AGTTTTTCAGACTGATGAAGAGCAG 59.531 40.000 5.87 0.00 40.16 4.24
4257 4601 4.631773 TGATGAAGAGCAGCAGCC 57.368 55.556 0.00 0.00 38.12 4.85
4262 4606 1.296068 GAAGAGCAGCAGCCTCTGT 59.704 57.895 0.00 0.00 43.56 3.41
4305 4649 3.565764 TCAGCAATGAAGGGGATACAG 57.434 47.619 0.00 0.00 39.74 2.74
4354 4698 9.082313 CTTTTGGGCAAAGATGGATAGTATATT 57.918 33.333 0.00 0.00 44.40 1.28
4384 4734 8.859236 AGATTCAATTGGTATACTGGATGATG 57.141 34.615 5.42 0.00 0.00 3.07
4415 4770 4.139786 ACTATGGCTGTGCAATAGATTGG 58.860 43.478 17.78 0.00 43.24 3.16
4503 4880 3.934068 ACCACGTCAAGTATTTCCGAAT 58.066 40.909 0.00 0.00 0.00 3.34
4519 4896 4.458397 TCCGAATGGAGGTAGTAGTAGTG 58.542 47.826 0.00 0.00 40.17 2.74
4594 4971 1.000955 TCTTTTCCTCGCCTGTCTGTC 59.999 52.381 0.00 0.00 0.00 3.51
4595 4972 1.001406 CTTTTCCTCGCCTGTCTGTCT 59.999 52.381 0.00 0.00 0.00 3.41
4596 4973 0.318441 TTTCCTCGCCTGTCTGTCTG 59.682 55.000 0.00 0.00 0.00 3.51
4597 4974 0.827925 TTCCTCGCCTGTCTGTCTGT 60.828 55.000 0.00 0.00 0.00 3.41
4624 5001 4.122776 CTGTTATTATCTGTGCTCGGCTT 58.877 43.478 0.00 0.00 0.00 4.35
4638 5015 3.877508 GCTCGGCTTAGTACATGGAATTT 59.122 43.478 0.00 0.00 0.00 1.82
4673 5051 5.072736 TCAGGATCACATAGCTGATTCCAAT 59.927 40.000 0.00 0.00 30.62 3.16
4736 5117 2.935201 CTGCATCCTGCTACTTCAGTTC 59.065 50.000 0.34 0.00 45.31 3.01
4763 5144 7.119262 AGGTAGATAACATTGCAGTTGTTGTAC 59.881 37.037 21.02 18.00 37.81 2.90
4899 5286 5.779241 AATTACCCTGATGAAGGTCTCAA 57.221 39.130 0.00 0.00 45.78 3.02
4900 5287 4.553330 TTACCCTGATGAAGGTCTCAAC 57.447 45.455 0.00 0.00 45.78 3.18
4901 5288 2.625639 ACCCTGATGAAGGTCTCAACT 58.374 47.619 0.00 0.00 45.78 3.16
4902 5289 2.569404 ACCCTGATGAAGGTCTCAACTC 59.431 50.000 0.00 0.00 45.78 3.01
4903 5290 2.836981 CCCTGATGAAGGTCTCAACTCT 59.163 50.000 0.00 0.00 45.78 3.24
4904 5291 3.118811 CCCTGATGAAGGTCTCAACTCTC 60.119 52.174 0.00 0.00 45.78 3.20
4921 5308 5.543507 ACTCTCAAGTGAAGTGATTGAGT 57.456 39.130 12.42 0.00 46.43 3.41
4960 5347 6.301169 ACCTGACTTTTCCTCCACTATTAG 57.699 41.667 0.00 0.00 0.00 1.73
5040 5430 4.083696 CCATTTTCTGCTGGATTGTTTTGC 60.084 41.667 0.00 0.00 34.24 3.68
5048 5438 3.858503 GCTGGATTGTTTTGCCTCTGTTC 60.859 47.826 0.00 0.00 0.00 3.18
5050 5440 2.627699 GGATTGTTTTGCCTCTGTTCCA 59.372 45.455 0.00 0.00 0.00 3.53
5051 5441 3.259123 GGATTGTTTTGCCTCTGTTCCAT 59.741 43.478 0.00 0.00 0.00 3.41
5052 5442 3.731652 TTGTTTTGCCTCTGTTCCATG 57.268 42.857 0.00 0.00 0.00 3.66
5053 5443 2.665165 TGTTTTGCCTCTGTTCCATGT 58.335 42.857 0.00 0.00 0.00 3.21
5055 5445 3.068024 TGTTTTGCCTCTGTTCCATGTTC 59.932 43.478 0.00 0.00 0.00 3.18
5079 5469 7.050377 TCCAACTATCCACTCTGAATTTCATC 58.950 38.462 0.00 0.00 0.00 2.92
5111 6182 7.493499 AGAAATATCTCTCCTGGTGGATATG 57.507 40.000 14.74 0.00 42.29 1.78
5123 6194 5.653769 CCTGGTGGATATGAACATGTTTTCT 59.346 40.000 13.36 3.30 34.57 2.52
5124 6195 6.183360 CCTGGTGGATATGAACATGTTTTCTC 60.183 42.308 13.36 7.55 34.57 2.87
5126 6197 6.891361 TGGTGGATATGAACATGTTTTCTCAT 59.109 34.615 13.36 13.58 33.26 2.90
5127 6198 7.396907 TGGTGGATATGAACATGTTTTCTCATT 59.603 33.333 13.36 3.18 31.20 2.57
5128 6199 7.703621 GGTGGATATGAACATGTTTTCTCATTG 59.296 37.037 13.36 0.00 31.20 2.82
5131 6202 8.461222 GGATATGAACATGTTTTCTCATTGTGA 58.539 33.333 13.36 0.00 31.20 3.58
5134 6205 6.497437 TGAACATGTTTTCTCATTGTGACTG 58.503 36.000 13.36 0.00 0.00 3.51
5135 6206 6.318396 TGAACATGTTTTCTCATTGTGACTGA 59.682 34.615 13.36 0.00 0.00 3.41
5138 6209 6.974622 ACATGTTTTCTCATTGTGACTGAAAC 59.025 34.615 0.00 7.22 0.00 2.78
5139 6210 6.757897 TGTTTTCTCATTGTGACTGAAACT 57.242 33.333 12.26 0.00 0.00 2.66
5140 6211 6.554419 TGTTTTCTCATTGTGACTGAAACTG 58.446 36.000 12.26 0.00 0.00 3.16
5142 6213 5.739752 TTCTCATTGTGACTGAAACTGTG 57.260 39.130 0.00 0.00 0.00 3.66
5144 6215 5.912892 TCTCATTGTGACTGAAACTGTGTA 58.087 37.500 0.00 0.00 0.00 2.90
5145 6216 6.345298 TCTCATTGTGACTGAAACTGTGTAA 58.655 36.000 0.00 0.00 0.00 2.41
5146 6217 6.479990 TCTCATTGTGACTGAAACTGTGTAAG 59.520 38.462 0.00 0.00 0.00 2.34
5147 6218 4.875544 TTGTGACTGAAACTGTGTAAGC 57.124 40.909 0.00 0.00 0.00 3.09
5149 6220 3.871006 TGTGACTGAAACTGTGTAAGCTG 59.129 43.478 0.00 0.00 0.00 4.24
5151 6222 4.752101 GTGACTGAAACTGTGTAAGCTGAT 59.248 41.667 0.00 0.00 0.00 2.90
5152 6223 5.237344 GTGACTGAAACTGTGTAAGCTGATT 59.763 40.000 0.00 0.00 0.00 2.57
5153 6224 5.822519 TGACTGAAACTGTGTAAGCTGATTT 59.177 36.000 0.00 0.00 0.00 2.17
5154 6225 6.064846 ACTGAAACTGTGTAAGCTGATTTG 57.935 37.500 0.00 0.00 0.00 2.32
5155 6226 5.822519 ACTGAAACTGTGTAAGCTGATTTGA 59.177 36.000 0.00 0.00 0.00 2.69
5157 6228 5.588246 TGAAACTGTGTAAGCTGATTTGACA 59.412 36.000 0.00 0.00 0.00 3.58
5158 6229 5.424121 AACTGTGTAAGCTGATTTGACAC 57.576 39.130 5.08 5.08 40.62 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.325804 TGGCTTAGAGTTTAGGGTATAACCTC 59.674 42.308 14.16 0.00 42.09 3.85
1 2 6.207532 TGGCTTAGAGTTTAGGGTATAACCT 58.792 40.000 15.26 15.26 44.75 3.50
30 31 0.035820 ATATTGCCAACGACGGTGGT 60.036 50.000 31.34 15.76 0.00 4.16
34 35 3.691049 AAATGATATTGCCAACGACGG 57.309 42.857 0.00 0.00 0.00 4.79
65 66 8.948631 TGTGGTAAGCAATACAAATTCAAAAA 57.051 26.923 2.63 0.00 36.14 1.94
66 67 9.202273 GATGTGGTAAGCAATACAAATTCAAAA 57.798 29.630 2.63 0.00 36.14 2.44
67 68 8.584157 AGATGTGGTAAGCAATACAAATTCAAA 58.416 29.630 2.63 0.00 36.14 2.69
68 69 8.028354 CAGATGTGGTAAGCAATACAAATTCAA 58.972 33.333 2.63 0.00 36.14 2.69
69 70 7.176515 ACAGATGTGGTAAGCAATACAAATTCA 59.823 33.333 0.00 0.00 36.14 2.57
70 71 7.538575 ACAGATGTGGTAAGCAATACAAATTC 58.461 34.615 0.00 0.00 36.14 2.17
71 72 7.176515 TGACAGATGTGGTAAGCAATACAAATT 59.823 33.333 0.00 0.00 36.14 1.82
72 73 6.658816 TGACAGATGTGGTAAGCAATACAAAT 59.341 34.615 0.00 0.00 36.14 2.32
73 74 6.000840 TGACAGATGTGGTAAGCAATACAAA 58.999 36.000 0.00 0.00 36.14 2.83
74 75 5.411361 GTGACAGATGTGGTAAGCAATACAA 59.589 40.000 0.00 0.00 36.14 2.41
75 76 4.935205 GTGACAGATGTGGTAAGCAATACA 59.065 41.667 0.00 0.00 36.14 2.29
76 77 4.332819 GGTGACAGATGTGGTAAGCAATAC 59.667 45.833 0.00 0.00 0.00 1.89
77 78 4.225042 AGGTGACAGATGTGGTAAGCAATA 59.775 41.667 0.00 0.00 0.00 1.90
78 79 3.009473 AGGTGACAGATGTGGTAAGCAAT 59.991 43.478 0.00 0.00 0.00 3.56
79 80 2.371841 AGGTGACAGATGTGGTAAGCAA 59.628 45.455 0.00 0.00 0.00 3.91
80 81 1.977854 AGGTGACAGATGTGGTAAGCA 59.022 47.619 0.00 0.00 0.00 3.91
81 82 2.350522 CAGGTGACAGATGTGGTAAGC 58.649 52.381 0.00 0.00 0.00 3.09
82 83 2.303022 ACCAGGTGACAGATGTGGTAAG 59.697 50.000 0.00 0.00 39.80 2.34
83 84 2.334977 ACCAGGTGACAGATGTGGTAA 58.665 47.619 0.00 0.00 39.80 2.85
84 85 2.024176 ACCAGGTGACAGATGTGGTA 57.976 50.000 0.00 0.00 39.80 3.25
85 86 2.024176 TACCAGGTGACAGATGTGGT 57.976 50.000 0.76 0.00 43.93 4.16
86 87 4.963318 ATATACCAGGTGACAGATGTGG 57.037 45.455 0.76 0.00 0.00 4.17
87 88 7.726216 TCTAAATATACCAGGTGACAGATGTG 58.274 38.462 0.76 0.00 0.00 3.21
88 89 7.914427 TCTAAATATACCAGGTGACAGATGT 57.086 36.000 0.76 0.00 0.00 3.06
93 94 9.769677 AGCTATATCTAAATATACCAGGTGACA 57.230 33.333 0.76 0.00 30.59 3.58
108 109 9.863650 ACAAGTACTTGGAGTAGCTATATCTAA 57.136 33.333 33.11 2.31 44.45 2.10
109 110 9.863650 AACAAGTACTTGGAGTAGCTATATCTA 57.136 33.333 33.11 0.00 44.45 1.98
110 111 8.770010 AACAAGTACTTGGAGTAGCTATATCT 57.230 34.615 33.11 9.65 44.45 1.98
111 112 9.896263 GTAACAAGTACTTGGAGTAGCTATATC 57.104 37.037 33.11 9.93 44.45 1.63
112 113 9.417561 TGTAACAAGTACTTGGAGTAGCTATAT 57.582 33.333 33.11 10.24 44.45 0.86
113 114 8.812513 TGTAACAAGTACTTGGAGTAGCTATA 57.187 34.615 33.11 12.85 44.45 1.31
114 115 7.713734 TGTAACAAGTACTTGGAGTAGCTAT 57.286 36.000 33.11 11.39 44.45 2.97
115 116 7.713734 ATGTAACAAGTACTTGGAGTAGCTA 57.286 36.000 33.11 14.95 44.45 3.32
116 117 6.607004 ATGTAACAAGTACTTGGAGTAGCT 57.393 37.500 33.11 12.73 44.45 3.32
117 118 8.767478 TTTATGTAACAAGTACTTGGAGTAGC 57.233 34.615 33.11 19.04 44.45 3.58
197 233 4.062991 CGGTTCCTATGTATGTTTAGGGC 58.937 47.826 0.00 0.00 36.44 5.19
232 275 7.562088 GGGAATAACTTGGGTTTGACCATATTA 59.438 37.037 0.00 0.00 41.02 0.98
244 287 4.042174 TCCTTATCGGGAATAACTTGGGT 58.958 43.478 0.00 0.00 31.67 4.51
268 311 6.347240 GCTGAGAAAGATGGCAAATATACTCG 60.347 42.308 0.00 0.00 0.00 4.18
288 332 0.037303 ATGTTGGTCACAGGGCTGAG 59.963 55.000 0.00 0.00 39.40 3.35
289 333 0.036732 GATGTTGGTCACAGGGCTGA 59.963 55.000 0.00 0.00 39.40 4.26
292 336 0.539438 TTGGATGTTGGTCACAGGGC 60.539 55.000 0.00 0.00 39.40 5.19
321 365 3.053693 TGAATAATGGAGTGAGGTTGGGG 60.054 47.826 0.00 0.00 0.00 4.96
357 401 1.078759 ACGTGTGCGCAATCTCTAGC 61.079 55.000 14.00 0.00 42.83 3.42
402 446 0.309612 GTTTGCGGATTGTCGGTTGT 59.690 50.000 0.00 0.00 0.00 3.32
444 493 4.583073 ACTGCCGTTTTCTTTCAACCTAAT 59.417 37.500 0.00 0.00 0.00 1.73
446 495 3.547746 ACTGCCGTTTTCTTTCAACCTA 58.452 40.909 0.00 0.00 0.00 3.08
449 498 3.242511 ACGTACTGCCGTTTTCTTTCAAC 60.243 43.478 0.00 0.00 37.96 3.18
451 500 2.553086 ACGTACTGCCGTTTTCTTTCA 58.447 42.857 0.00 0.00 37.96 2.69
452 501 3.422732 GCTACGTACTGCCGTTTTCTTTC 60.423 47.826 0.00 0.00 42.00 2.62
470 520 2.279136 GTGATGATGACGTGAACGCTAC 59.721 50.000 2.11 0.00 44.43 3.58
471 521 2.094957 TGTGATGATGACGTGAACGCTA 60.095 45.455 2.11 0.00 44.43 4.26
472 522 1.336795 TGTGATGATGACGTGAACGCT 60.337 47.619 2.11 0.00 44.43 5.07
473 523 1.067693 TGTGATGATGACGTGAACGC 58.932 50.000 2.11 0.00 44.43 4.84
524 574 7.847096 ACTGTGATTTTCCCTTGTTACTTTTT 58.153 30.769 0.00 0.00 0.00 1.94
525 575 7.342026 AGACTGTGATTTTCCCTTGTTACTTTT 59.658 33.333 0.00 0.00 0.00 2.27
526 576 6.833933 AGACTGTGATTTTCCCTTGTTACTTT 59.166 34.615 0.00 0.00 0.00 2.66
527 577 6.365520 AGACTGTGATTTTCCCTTGTTACTT 58.634 36.000 0.00 0.00 0.00 2.24
528 578 5.941788 AGACTGTGATTTTCCCTTGTTACT 58.058 37.500 0.00 0.00 0.00 2.24
529 579 5.107065 CGAGACTGTGATTTTCCCTTGTTAC 60.107 44.000 0.00 0.00 0.00 2.50
530 580 4.994852 CGAGACTGTGATTTTCCCTTGTTA 59.005 41.667 0.00 0.00 0.00 2.41
531 581 3.815401 CGAGACTGTGATTTTCCCTTGTT 59.185 43.478 0.00 0.00 0.00 2.83
532 582 3.403038 CGAGACTGTGATTTTCCCTTGT 58.597 45.455 0.00 0.00 0.00 3.16
533 583 2.160417 GCGAGACTGTGATTTTCCCTTG 59.840 50.000 0.00 0.00 0.00 3.61
534 584 2.427506 GCGAGACTGTGATTTTCCCTT 58.572 47.619 0.00 0.00 0.00 3.95
535 585 1.339151 GGCGAGACTGTGATTTTCCCT 60.339 52.381 0.00 0.00 0.00 4.20
538 588 1.429463 ACGGCGAGACTGTGATTTTC 58.571 50.000 16.62 0.00 36.16 2.29
546 598 1.203928 GAATCATCACGGCGAGACTG 58.796 55.000 16.62 11.72 0.00 3.51
563 615 1.448893 GGCGACTATTGGCACGGAA 60.449 57.895 0.00 0.00 0.00 4.30
574 626 0.454600 GACAGTGAATCCGGCGACTA 59.545 55.000 9.30 0.00 0.00 2.59
576 628 0.669318 TTGACAGTGAATCCGGCGAC 60.669 55.000 9.30 0.00 0.00 5.19
577 629 0.249120 ATTGACAGTGAATCCGGCGA 59.751 50.000 9.30 0.00 0.00 5.54
578 630 1.062587 GAATTGACAGTGAATCCGGCG 59.937 52.381 0.00 0.00 0.00 6.46
579 631 1.062587 CGAATTGACAGTGAATCCGGC 59.937 52.381 0.00 0.00 0.00 6.13
581 633 2.002586 AGCGAATTGACAGTGAATCCG 58.997 47.619 0.00 0.00 0.00 4.18
582 634 2.352960 GGAGCGAATTGACAGTGAATCC 59.647 50.000 0.00 0.00 0.00 3.01
599 659 1.226575 GCGGCGGTAATTTTGGAGC 60.227 57.895 9.78 0.00 0.00 4.70
731 805 3.146847 GGCGGTTGATTTTATAGGGAGG 58.853 50.000 0.00 0.00 0.00 4.30
732 806 3.815809 TGGCGGTTGATTTTATAGGGAG 58.184 45.455 0.00 0.00 0.00 4.30
733 807 3.935818 TGGCGGTTGATTTTATAGGGA 57.064 42.857 0.00 0.00 0.00 4.20
734 808 3.506067 GGATGGCGGTTGATTTTATAGGG 59.494 47.826 0.00 0.00 0.00 3.53
756 831 4.957164 GGGGGTTTTAGCGAGGAG 57.043 61.111 0.00 0.00 0.00 3.69
773 848 3.126831 GGTCACGCTAAGATGAGATTGG 58.873 50.000 0.00 0.00 0.00 3.16
774 849 4.047822 GAGGTCACGCTAAGATGAGATTG 58.952 47.826 0.00 0.00 0.00 2.67
775 850 3.957497 AGAGGTCACGCTAAGATGAGATT 59.043 43.478 0.00 0.00 0.00 2.40
776 851 3.561143 AGAGGTCACGCTAAGATGAGAT 58.439 45.455 0.00 0.00 0.00 2.75
777 852 2.946329 GAGAGGTCACGCTAAGATGAGA 59.054 50.000 0.00 0.00 0.00 3.27
778 853 2.685388 TGAGAGGTCACGCTAAGATGAG 59.315 50.000 0.00 0.00 0.00 2.90
779 854 2.685388 CTGAGAGGTCACGCTAAGATGA 59.315 50.000 0.00 0.00 26.81 2.92
780 855 2.223688 CCTGAGAGGTCACGCTAAGATG 60.224 54.545 0.00 0.00 26.81 2.90
944 1029 2.093106 ACTACGGCTCCTTCTACACTG 58.907 52.381 0.00 0.00 0.00 3.66
945 1030 2.510928 ACTACGGCTCCTTCTACACT 57.489 50.000 0.00 0.00 0.00 3.55
947 1032 2.240667 ACCTACTACGGCTCCTTCTACA 59.759 50.000 0.00 0.00 0.00 2.74
948 1033 2.929641 ACCTACTACGGCTCCTTCTAC 58.070 52.381 0.00 0.00 0.00 2.59
949 1034 3.713764 ACTACCTACTACGGCTCCTTCTA 59.286 47.826 0.00 0.00 0.00 2.10
950 1035 2.509131 ACTACCTACTACGGCTCCTTCT 59.491 50.000 0.00 0.00 0.00 2.85
951 1036 2.929641 ACTACCTACTACGGCTCCTTC 58.070 52.381 0.00 0.00 0.00 3.46
952 1037 3.181446 CCTACTACCTACTACGGCTCCTT 60.181 52.174 0.00 0.00 0.00 3.36
974 1059 3.119096 GCCAAACGGGTCTCGAGC 61.119 66.667 7.81 2.69 42.43 5.03
975 1060 2.434359 GGCCAAACGGGTCTCGAG 60.434 66.667 5.93 5.93 42.43 4.04
976 1061 4.367023 CGGCCAAACGGGTCTCGA 62.367 66.667 2.24 0.00 39.98 4.04
1305 1390 1.857426 CGGCGCGATTGTTTTCGAC 60.857 57.895 12.10 0.00 41.62 4.20
1308 1393 2.145905 CAGCGGCGCGATTGTTTTC 61.146 57.895 27.59 0.00 0.00 2.29
1443 1528 2.365105 TAGCCCTTGAGGACCCCG 60.365 66.667 0.00 0.00 38.24 5.73
1800 1885 0.547471 TCATCCAGGAAGTCCAGCCA 60.547 55.000 0.00 0.00 38.89 4.75
1902 1993 4.373116 TCTCCGTTGCCCTGCGTC 62.373 66.667 0.00 0.00 0.00 5.19
1903 1994 4.379243 CTCTCCGTTGCCCTGCGT 62.379 66.667 0.00 0.00 0.00 5.24
1962 2053 2.951745 GCGATCGTGTGCTCCTCG 60.952 66.667 17.81 0.00 0.00 4.63
1991 2082 2.261671 CCCAGAAGTCCACCGACG 59.738 66.667 0.00 0.00 44.28 5.12
2017 2108 3.195698 GCCCATCAGGAACGACGC 61.196 66.667 0.00 0.00 38.24 5.19
2174 2265 8.582096 GTTTAGTAGTAACGTACTTGATGAAGC 58.418 37.037 0.00 0.00 40.14 3.86
2193 2284 3.596956 AGGAGGAGGAGACTGGTTTAGTA 59.403 47.826 0.00 0.00 44.43 1.82
2194 2285 2.384029 AGGAGGAGGAGACTGGTTTAGT 59.616 50.000 0.00 0.00 44.43 2.24
2196 2287 3.562108 AAGGAGGAGGAGACTGGTTTA 57.438 47.619 0.00 0.00 44.43 2.01
2198 2289 2.424684 AAAGGAGGAGGAGACTGGTT 57.575 50.000 0.00 0.00 44.43 3.67
2201 2292 2.685897 CGAGTAAAGGAGGAGGAGACTG 59.314 54.545 0.00 0.00 44.43 3.51
2203 2294 1.406180 GCGAGTAAAGGAGGAGGAGAC 59.594 57.143 0.00 0.00 0.00 3.36
2207 2298 1.123928 ATGGCGAGTAAAGGAGGAGG 58.876 55.000 0.00 0.00 0.00 4.30
2208 2299 1.757118 TCATGGCGAGTAAAGGAGGAG 59.243 52.381 0.00 0.00 0.00 3.69
2209 2300 1.860641 TCATGGCGAGTAAAGGAGGA 58.139 50.000 0.00 0.00 0.00 3.71
2256 2347 2.021931 GGTCGTCGTACCGTAGCG 59.978 66.667 0.00 0.00 0.00 4.26
2257 2348 1.349973 GAGGTCGTCGTACCGTAGC 59.650 63.158 7.81 0.00 44.77 3.58
2259 2350 1.809619 CGGAGGTCGTCGTACCGTA 60.810 63.158 0.00 0.00 44.77 4.02
2308 2399 8.414629 TTCTGAGCAAGCTAGATATAGATTGA 57.585 34.615 25.22 7.19 43.81 2.57
2309 2400 9.656040 AATTCTGAGCAAGCTAGATATAGATTG 57.344 33.333 18.60 18.60 43.89 2.67
2310 2401 9.656040 CAATTCTGAGCAAGCTAGATATAGATT 57.344 33.333 0.00 0.00 0.00 2.40
2311 2402 9.033711 TCAATTCTGAGCAAGCTAGATATAGAT 57.966 33.333 0.00 0.00 0.00 1.98
2402 2494 2.473984 GCCGTCCATGCGTTTATACTAC 59.526 50.000 0.00 0.00 0.00 2.73
2403 2495 2.746269 GCCGTCCATGCGTTTATACTA 58.254 47.619 0.00 0.00 0.00 1.82
2404 2496 1.578583 GCCGTCCATGCGTTTATACT 58.421 50.000 0.00 0.00 0.00 2.12
2405 2497 0.231279 CGCCGTCCATGCGTTTATAC 59.769 55.000 0.00 0.00 46.59 1.47
2406 2498 2.595707 CGCCGTCCATGCGTTTATA 58.404 52.632 0.00 0.00 46.59 0.98
2407 2499 3.405464 CGCCGTCCATGCGTTTAT 58.595 55.556 0.00 0.00 46.59 1.40
2459 2551 3.134127 GACCCAGGCCGCACATTC 61.134 66.667 0.00 0.00 0.00 2.67
2516 2681 7.227314 TGGTGCTTAAGATAGAATATGCACAAG 59.773 37.037 18.98 0.00 46.61 3.16
2571 2736 2.948979 CCGCAGCCATTTTAGTCCATTA 59.051 45.455 0.00 0.00 0.00 1.90
2572 2737 1.750778 CCGCAGCCATTTTAGTCCATT 59.249 47.619 0.00 0.00 0.00 3.16
2573 2738 1.340991 ACCGCAGCCATTTTAGTCCAT 60.341 47.619 0.00 0.00 0.00 3.41
2588 2753 1.406341 GCTTAAGATACCACCACCGCA 60.406 52.381 6.67 0.00 0.00 5.69
2615 2783 0.107831 AACTGCCACTTTGCCGTCTA 59.892 50.000 0.00 0.00 0.00 2.59
2643 2848 7.096353 GGTGAACGTCTTTTTGCCTAAATAAAC 60.096 37.037 0.00 0.00 0.00 2.01
2663 2868 0.454600 TATCTGAGGCGTCGGTGAAC 59.545 55.000 14.58 0.00 0.00 3.18
2676 2881 7.157347 GGCATCACTCTGTTGAATATATCTGA 58.843 38.462 0.00 0.00 0.00 3.27
2692 2916 7.391148 TCTTTAACTTTTATGGGCATCACTC 57.609 36.000 0.00 0.00 0.00 3.51
2725 2949 0.546598 ACTTTTCTATGCTCCCCGGG 59.453 55.000 15.80 15.80 0.00 5.73
2726 2950 2.420058 AACTTTTCTATGCTCCCCGG 57.580 50.000 0.00 0.00 0.00 5.73
2727 2951 3.312697 GCTAAACTTTTCTATGCTCCCCG 59.687 47.826 0.00 0.00 0.00 5.73
2728 2952 4.270008 TGCTAAACTTTTCTATGCTCCCC 58.730 43.478 0.00 0.00 0.00 4.81
2730 2954 5.163713 CCACTGCTAAACTTTTCTATGCTCC 60.164 44.000 0.00 0.00 0.00 4.70
2732 2956 4.702131 CCCACTGCTAAACTTTTCTATGCT 59.298 41.667 0.00 0.00 0.00 3.79
2733 2957 4.142381 CCCCACTGCTAAACTTTTCTATGC 60.142 45.833 0.00 0.00 0.00 3.14
2734 2958 4.399303 CCCCCACTGCTAAACTTTTCTATG 59.601 45.833 0.00 0.00 0.00 2.23
2735 2959 4.291249 TCCCCCACTGCTAAACTTTTCTAT 59.709 41.667 0.00 0.00 0.00 1.98
2736 2960 3.653836 TCCCCCACTGCTAAACTTTTCTA 59.346 43.478 0.00 0.00 0.00 2.10
2737 2961 2.445525 TCCCCCACTGCTAAACTTTTCT 59.554 45.455 0.00 0.00 0.00 2.52
2739 2963 2.177016 AGTCCCCCACTGCTAAACTTTT 59.823 45.455 0.00 0.00 32.26 2.27
2740 2964 1.780919 AGTCCCCCACTGCTAAACTTT 59.219 47.619 0.00 0.00 32.26 2.66
2769 2993 3.349022 CCAGGGCTTGTTTTATCCGTTA 58.651 45.455 0.00 0.00 0.00 3.18
2771 2995 1.615919 CCCAGGGCTTGTTTTATCCGT 60.616 52.381 0.00 0.00 0.00 4.69
2772 2996 1.102978 CCCAGGGCTTGTTTTATCCG 58.897 55.000 0.00 0.00 0.00 4.18
2773 2997 2.525105 TCCCAGGGCTTGTTTTATCC 57.475 50.000 0.00 0.00 0.00 2.59
2774 2998 2.695147 CCATCCCAGGGCTTGTTTTATC 59.305 50.000 0.00 0.00 0.00 1.75
2776 3000 1.272985 CCCATCCCAGGGCTTGTTTTA 60.273 52.381 0.00 0.00 43.10 1.52
2786 3010 1.438469 TTCTATGCTCCCATCCCAGG 58.562 55.000 0.00 0.00 32.85 4.45
2787 3011 3.117738 ACTTTTCTATGCTCCCATCCCAG 60.118 47.826 0.00 0.00 32.85 4.45
2788 3012 2.852449 ACTTTTCTATGCTCCCATCCCA 59.148 45.455 0.00 0.00 32.85 4.37
2789 3013 3.217626 CACTTTTCTATGCTCCCATCCC 58.782 50.000 0.00 0.00 32.85 3.85
2790 3014 3.217626 CCACTTTTCTATGCTCCCATCC 58.782 50.000 0.00 0.00 32.85 3.51
2791 3015 3.217626 CCCACTTTTCTATGCTCCCATC 58.782 50.000 0.00 0.00 32.85 3.51
2792 3016 2.687914 GCCCACTTTTCTATGCTCCCAT 60.688 50.000 0.00 0.00 35.44 4.00
2851 3075 5.243283 ACAAGTTGACACTTCTATACTCGGT 59.757 40.000 10.54 0.00 41.69 4.69
2852 3076 5.573282 CACAAGTTGACACTTCTATACTCGG 59.427 44.000 10.54 0.00 41.69 4.63
2902 3126 2.886730 TAAAAGGCGCCCCAGCTAGC 62.887 60.000 26.15 6.62 36.60 3.42
2903 3127 1.095807 GTAAAAGGCGCCCCAGCTAG 61.096 60.000 26.15 0.00 36.60 3.42
2904 3128 1.078001 GTAAAAGGCGCCCCAGCTA 60.078 57.895 26.15 4.92 36.60 3.32
2905 3129 2.361230 GTAAAAGGCGCCCCAGCT 60.361 61.111 26.15 0.00 36.60 4.24
2906 3130 3.449227 GGTAAAAGGCGCCCCAGC 61.449 66.667 26.15 11.78 0.00 4.85
2907 3131 3.131478 CGGTAAAAGGCGCCCCAG 61.131 66.667 26.15 9.30 0.00 4.45
2908 3132 4.726304 CCGGTAAAAGGCGCCCCA 62.726 66.667 26.15 2.12 0.00 4.96
2909 3133 4.728110 ACCGGTAAAAGGCGCCCC 62.728 66.667 26.15 16.28 0.00 5.80
2983 3207 0.689055 TGGCCATAGCTATCAGGCTG 59.311 55.000 26.03 8.58 46.23 4.85
2984 3208 1.438469 TTGGCCATAGCTATCAGGCT 58.562 50.000 26.03 0.00 46.23 4.58
3021 3263 3.978687 ACTCAACTGAAGTACTGAACCG 58.021 45.455 0.00 0.00 0.00 4.44
3032 3279 5.475909 CACCACCTACTACTACTCAACTGAA 59.524 44.000 0.00 0.00 0.00 3.02
3033 3280 5.008331 CACCACCTACTACTACTCAACTGA 58.992 45.833 0.00 0.00 0.00 3.41
3034 3281 4.158025 CCACCACCTACTACTACTCAACTG 59.842 50.000 0.00 0.00 0.00 3.16
3035 3282 4.202652 ACCACCACCTACTACTACTCAACT 60.203 45.833 0.00 0.00 0.00 3.16
3036 3283 4.085009 ACCACCACCTACTACTACTCAAC 58.915 47.826 0.00 0.00 0.00 3.18
3037 3284 4.393239 ACCACCACCTACTACTACTCAA 57.607 45.455 0.00 0.00 0.00 3.02
3038 3285 4.393239 AACCACCACCTACTACTACTCA 57.607 45.455 0.00 0.00 0.00 3.41
3039 3286 5.015515 AGAAACCACCACCTACTACTACTC 58.984 45.833 0.00 0.00 0.00 2.59
3040 3287 5.008165 AGAAACCACCACCTACTACTACT 57.992 43.478 0.00 0.00 0.00 2.57
3041 3288 4.768968 TGAGAAACCACCACCTACTACTAC 59.231 45.833 0.00 0.00 0.00 2.73
3042 3289 4.768968 GTGAGAAACCACCACCTACTACTA 59.231 45.833 0.00 0.00 0.00 1.82
3065 3312 3.672397 CGATTCATGCGAGATCTTAGTGG 59.328 47.826 0.00 0.00 0.00 4.00
3076 3323 0.390998 TTGAGGCACGATTCATGCGA 60.391 50.000 0.00 0.00 44.37 5.10
3077 3324 0.247814 GTTGAGGCACGATTCATGCG 60.248 55.000 0.00 0.00 44.37 4.73
3100 3347 9.139734 CCAGTTCATTATACAGGTAGGTACTAA 57.860 37.037 0.00 0.00 45.48 2.24
3153 3400 3.331293 GGCTAGCCCCCTTGCTTA 58.669 61.111 24.19 0.00 42.75 3.09
3165 3412 0.108138 CTCTTGTCCAACCGGGCTAG 60.108 60.000 6.32 0.00 40.68 3.42
3233 3483 8.932945 TTGATACTACTAGCAATCTGAACTTG 57.067 34.615 0.00 0.00 0.00 3.16
3249 3499 9.988350 AAAATCACGATTGTTCATTGATACTAC 57.012 29.630 0.00 0.00 0.00 2.73
3354 3606 8.576442 CCCAAATGTAAGACACTTTTTCATACT 58.424 33.333 0.00 0.00 33.48 2.12
3355 3607 7.812669 CCCCAAATGTAAGACACTTTTTCATAC 59.187 37.037 0.00 0.00 33.48 2.39
3356 3608 7.726291 TCCCCAAATGTAAGACACTTTTTCATA 59.274 33.333 0.00 0.00 33.48 2.15
3357 3609 6.553100 TCCCCAAATGTAAGACACTTTTTCAT 59.447 34.615 0.00 0.00 33.48 2.57
3358 3610 5.894393 TCCCCAAATGTAAGACACTTTTTCA 59.106 36.000 0.00 0.00 33.48 2.69
3359 3611 6.213677 GTCCCCAAATGTAAGACACTTTTTC 58.786 40.000 0.00 0.00 33.48 2.29
3360 3612 5.221165 CGTCCCCAAATGTAAGACACTTTTT 60.221 40.000 0.00 0.00 33.48 1.94
3361 3613 4.277423 CGTCCCCAAATGTAAGACACTTTT 59.723 41.667 0.00 0.00 35.49 2.27
3362 3614 3.818773 CGTCCCCAAATGTAAGACACTTT 59.181 43.478 0.00 0.00 0.00 2.66
3363 3615 3.408634 CGTCCCCAAATGTAAGACACTT 58.591 45.455 0.00 0.00 0.00 3.16
3364 3616 2.290071 CCGTCCCCAAATGTAAGACACT 60.290 50.000 0.00 0.00 0.00 3.55
3365 3617 2.081462 CCGTCCCCAAATGTAAGACAC 58.919 52.381 0.00 0.00 0.00 3.67
3366 3618 1.979308 TCCGTCCCCAAATGTAAGACA 59.021 47.619 0.00 0.00 0.00 3.41
3367 3619 2.629051 CTCCGTCCCCAAATGTAAGAC 58.371 52.381 0.00 0.00 0.00 3.01
3368 3620 1.557832 CCTCCGTCCCCAAATGTAAGA 59.442 52.381 0.00 0.00 0.00 2.10
3369 3621 1.408266 CCCTCCGTCCCCAAATGTAAG 60.408 57.143 0.00 0.00 0.00 2.34
3370 3622 0.621609 CCCTCCGTCCCCAAATGTAA 59.378 55.000 0.00 0.00 0.00 2.41
3371 3623 0.252789 TCCCTCCGTCCCCAAATGTA 60.253 55.000 0.00 0.00 0.00 2.29
3372 3624 1.540367 TCCCTCCGTCCCCAAATGT 60.540 57.895 0.00 0.00 0.00 2.71
3373 3625 1.224592 CTCCCTCCGTCCCCAAATG 59.775 63.158 0.00 0.00 0.00 2.32
3374 3626 0.043637 TACTCCCTCCGTCCCCAAAT 59.956 55.000 0.00 0.00 0.00 2.32
3375 3627 0.616679 CTACTCCCTCCGTCCCCAAA 60.617 60.000 0.00 0.00 0.00 3.28
3376 3628 1.001248 CTACTCCCTCCGTCCCCAA 59.999 63.158 0.00 0.00 0.00 4.12
3377 3629 0.920763 TACTACTCCCTCCGTCCCCA 60.921 60.000 0.00 0.00 0.00 4.96
3378 3630 0.259938 TTACTACTCCCTCCGTCCCC 59.740 60.000 0.00 0.00 0.00 4.81
3379 3631 1.397672 GTTACTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
3380 3632 1.064091 AGGTTACTACTCCCTCCGTCC 60.064 57.143 0.00 0.00 0.00 4.79
3381 3633 2.022934 CAGGTTACTACTCCCTCCGTC 58.977 57.143 0.00 0.00 0.00 4.79
3382 3634 1.357079 ACAGGTTACTACTCCCTCCGT 59.643 52.381 0.00 0.00 0.00 4.69
3383 3635 2.140839 ACAGGTTACTACTCCCTCCG 57.859 55.000 0.00 0.00 0.00 4.63
3384 3636 3.438183 TGAACAGGTTACTACTCCCTCC 58.562 50.000 0.00 0.00 0.00 4.30
3385 3637 5.395435 GGAATGAACAGGTTACTACTCCCTC 60.395 48.000 0.00 0.00 0.00 4.30
3386 3638 4.470304 GGAATGAACAGGTTACTACTCCCT 59.530 45.833 0.00 0.00 0.00 4.20
3387 3639 4.224370 TGGAATGAACAGGTTACTACTCCC 59.776 45.833 0.00 0.00 0.00 4.30
3388 3640 5.416271 TGGAATGAACAGGTTACTACTCC 57.584 43.478 0.00 0.00 0.00 3.85
3389 3641 7.923414 AAATGGAATGAACAGGTTACTACTC 57.077 36.000 0.00 0.00 0.00 2.59
3390 3642 8.164070 AGAAAATGGAATGAACAGGTTACTACT 58.836 33.333 0.00 0.00 0.00 2.57
3391 3643 8.237267 CAGAAAATGGAATGAACAGGTTACTAC 58.763 37.037 0.00 0.00 0.00 2.73
3418 3670 1.604604 TTGGCAAGGTTAGACAGTGC 58.395 50.000 0.00 0.00 34.42 4.40
3431 3683 2.032799 GTCAGTGATCGTTGTTTGGCAA 59.967 45.455 0.00 0.00 34.16 4.52
3435 3742 4.997905 ATCAGTCAGTGATCGTTGTTTG 57.002 40.909 0.00 0.00 42.80 2.93
3467 3774 7.746526 TCGAATATTTCTATGCATGATCGAG 57.253 36.000 10.16 0.00 32.55 4.04
3521 3828 8.313292 GCAATCTGAGTTTCTGGATCTCTATAT 58.687 37.037 0.00 0.00 0.00 0.86
3522 3829 7.508636 AGCAATCTGAGTTTCTGGATCTCTATA 59.491 37.037 0.00 0.00 0.00 1.31
3603 3917 0.251165 TAGGTTGCAAAGACAGGCCC 60.251 55.000 0.00 0.00 0.00 5.80
3605 3919 3.084786 AGATTAGGTTGCAAAGACAGGC 58.915 45.455 0.00 0.00 0.00 4.85
3607 3921 7.672983 TTAAGAGATTAGGTTGCAAAGACAG 57.327 36.000 0.00 0.00 0.00 3.51
3608 3922 8.635765 AATTAAGAGATTAGGTTGCAAAGACA 57.364 30.769 0.00 0.00 0.00 3.41
3630 3944 5.938125 ACGTTAGGCAGTGTCAGAATTAATT 59.062 36.000 0.00 0.00 0.00 1.40
3634 3948 3.402628 ACGTTAGGCAGTGTCAGAATT 57.597 42.857 0.00 0.00 0.00 2.17
3635 3949 3.067106 CAACGTTAGGCAGTGTCAGAAT 58.933 45.455 0.00 0.00 0.00 2.40
3644 3983 2.148916 TGTCTCACAACGTTAGGCAG 57.851 50.000 0.00 0.00 0.00 4.85
3647 3986 3.675225 CAGTCATGTCTCACAACGTTAGG 59.325 47.826 0.00 0.00 0.00 2.69
3648 3987 4.546570 TCAGTCATGTCTCACAACGTTAG 58.453 43.478 0.00 0.00 0.00 2.34
3660 3999 2.932614 CGTCCTGGAATTCAGTCATGTC 59.067 50.000 7.93 0.00 41.83 3.06
3909 4249 1.681486 GGCCCGAGAAGAGGAAGGAG 61.681 65.000 0.00 0.00 0.00 3.69
4068 4408 2.583520 CTGGTCCTGAGGCTGAGC 59.416 66.667 0.00 0.00 0.00 4.26
4096 4436 1.434513 TTGGCCTGGTGGATCTTGGT 61.435 55.000 3.32 0.00 34.57 3.67
4252 4596 1.002544 ACTTTACAGGACAGAGGCTGC 59.997 52.381 0.00 0.00 34.37 5.25
4257 4601 3.607078 GCGCAAAACTTTACAGGACAGAG 60.607 47.826 0.30 0.00 0.00 3.35
4262 4606 1.001815 GCTGCGCAAAACTTTACAGGA 60.002 47.619 13.05 0.00 0.00 3.86
4305 4649 6.051717 AGAATCAAGGCATGTACTGTATGTC 58.948 40.000 0.00 0.00 0.00 3.06
4358 4702 9.948964 CATCATCCAGTATACCAATTGAATCTA 57.051 33.333 7.12 0.00 0.00 1.98
4384 4734 4.820897 TGCACAGCCATAGTAGCATATAC 58.179 43.478 0.00 0.00 0.00 1.47
4415 4770 3.665675 CTACCACCGGCCTCTGCAC 62.666 68.421 0.00 0.00 40.13 4.57
4480 4857 3.319755 TCGGAAATACTTGACGTGGTTC 58.680 45.455 0.00 0.00 0.00 3.62
4503 4880 5.010314 CACAAACACACTACTACTACCTCCA 59.990 44.000 0.00 0.00 0.00 3.86
4509 4886 7.436080 GCTACAAACACAAACACACTACTACTA 59.564 37.037 0.00 0.00 0.00 1.82
4519 4896 3.775661 ACAGGCTACAAACACAAACAC 57.224 42.857 0.00 0.00 0.00 3.32
4594 4971 6.336566 AGCACAGATAATAACAGACAGACAG 58.663 40.000 0.00 0.00 0.00 3.51
4595 4972 6.286240 AGCACAGATAATAACAGACAGACA 57.714 37.500 0.00 0.00 0.00 3.41
4596 4973 5.457148 CGAGCACAGATAATAACAGACAGAC 59.543 44.000 0.00 0.00 0.00 3.51
4597 4974 5.450550 CCGAGCACAGATAATAACAGACAGA 60.451 44.000 0.00 0.00 0.00 3.41
4638 5015 6.094048 GCTATGTGATCCTGAAAGCACTTTTA 59.906 38.462 0.00 0.00 32.11 1.52
4673 5051 1.672363 CAGCTCACAAACAGCACTTCA 59.328 47.619 0.00 0.00 39.56 3.02
4724 5102 6.864342 TGTTATCTACCTGAACTGAAGTAGC 58.136 40.000 0.00 0.00 33.70 3.58
4727 5105 6.595716 GCAATGTTATCTACCTGAACTGAAGT 59.404 38.462 0.00 0.00 0.00 3.01
4736 5117 6.072508 ACAACAACTGCAATGTTATCTACCTG 60.073 38.462 15.02 6.16 38.90 4.00
4763 5144 0.322975 CACAGTCACTCCTTCCCTGG 59.677 60.000 0.00 0.00 0.00 4.45
4843 5227 4.719106 ACCTCAGGCTGCTGCTGC 62.719 66.667 21.42 21.42 39.59 5.25
4899 5286 5.543507 ACTCAATCACTTCACTTGAGAGT 57.456 39.130 16.07 0.27 45.57 3.24
4900 5287 9.814899 ATATAACTCAATCACTTCACTTGAGAG 57.185 33.333 16.07 0.00 45.57 3.20
4960 5347 4.023365 AGCAAAAATCTCAGACTGAAGTGC 60.023 41.667 6.61 9.43 0.00 4.40
5048 5438 4.080919 TCAGAGTGGATAGTTGGAACATGG 60.081 45.833 0.00 0.00 39.30 3.66
5050 5440 5.762179 TTCAGAGTGGATAGTTGGAACAT 57.238 39.130 0.00 0.00 39.30 2.71
5051 5441 5.762179 ATTCAGAGTGGATAGTTGGAACA 57.238 39.130 0.00 0.00 0.00 3.18
5052 5442 6.655003 TGAAATTCAGAGTGGATAGTTGGAAC 59.345 38.462 0.00 0.00 0.00 3.62
5053 5443 6.778821 TGAAATTCAGAGTGGATAGTTGGAA 58.221 36.000 0.00 0.00 0.00 3.53
5055 5445 6.018425 CGATGAAATTCAGAGTGGATAGTTGG 60.018 42.308 1.10 0.00 0.00 3.77
5111 6182 6.728200 TCAGTCACAATGAGAAAACATGTTC 58.272 36.000 12.39 0.00 0.00 3.18
5123 6194 5.007626 GCTTACACAGTTTCAGTCACAATGA 59.992 40.000 0.00 0.00 0.00 2.57
5124 6195 5.008019 AGCTTACACAGTTTCAGTCACAATG 59.992 40.000 0.00 0.00 0.00 2.82
5126 6197 4.332543 CAGCTTACACAGTTTCAGTCACAA 59.667 41.667 0.00 0.00 0.00 3.33
5127 6198 3.871006 CAGCTTACACAGTTTCAGTCACA 59.129 43.478 0.00 0.00 0.00 3.58
5128 6199 4.119862 TCAGCTTACACAGTTTCAGTCAC 58.880 43.478 0.00 0.00 0.00 3.67
5131 6202 5.822519 TCAAATCAGCTTACACAGTTTCAGT 59.177 36.000 0.00 0.00 0.00 3.41
5134 6205 5.909610 GTGTCAAATCAGCTTACACAGTTTC 59.090 40.000 0.00 0.00 40.08 2.78
5135 6206 5.821204 GTGTCAAATCAGCTTACACAGTTT 58.179 37.500 0.00 0.00 40.08 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.