Multiple sequence alignment - TraesCS5B01G328400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G328400 chr5B 100.000 3150 0 0 1 3150 511851398 511854547 0.000000e+00 5818.0
1 TraesCS5B01G328400 chr5B 74.453 685 116 37 1073 1744 512212668 512213306 1.130000e-59 241.0
2 TraesCS5B01G328400 chr5B 80.782 307 39 15 1451 1744 656926196 656926495 4.090000e-54 222.0
3 TraesCS5B01G328400 chr5B 90.000 50 4 1 1229 1278 474968796 474968748 2.620000e-06 63.9
4 TraesCS5B01G328400 chr5A 88.059 2730 175 70 221 2848 537614986 537617666 0.000000e+00 3096.0
5 TraesCS5B01G328400 chr5A 76.445 692 123 28 1085 1744 649441467 649442150 3.890000e-89 339.0
6 TraesCS5B01G328400 chr5A 74.378 683 120 34 1073 1744 537626135 537626773 1.130000e-59 241.0
7 TraesCS5B01G328400 chr5D 87.577 1795 103 62 702 2419 423972877 423974628 0.000000e+00 1969.0
8 TraesCS5B01G328400 chr5D 88.817 465 28 9 2411 2854 423974666 423975127 1.650000e-152 549.0
9 TraesCS5B01G328400 chr5D 83.878 490 53 12 1 464 423972080 423972569 8.020000e-121 444.0
10 TraesCS5B01G328400 chr5D 77.909 679 121 24 1085 1744 520910007 520910675 2.280000e-106 396.0
11 TraesCS5B01G328400 chr5D 91.566 249 13 5 471 713 423972609 423972855 1.400000e-88 337.0
12 TraesCS5B01G328400 chr7B 75.035 709 141 30 1073 1767 709510754 709511440 2.380000e-76 296.0
13 TraesCS5B01G328400 chr7D 74.614 713 138 36 1071 1767 616223811 616223126 1.110000e-69 274.0
14 TraesCS5B01G328400 chr4B 73.684 665 131 33 1103 1751 474378599 474379235 5.290000e-53 219.0
15 TraesCS5B01G328400 chr6D 93.182 44 3 0 1373 1416 84207062 84207105 7.290000e-07 65.8
16 TraesCS5B01G328400 chr6B 93.182 44 3 0 1373 1416 159952205 159952248 7.290000e-07 65.8
17 TraesCS5B01G328400 chr6A 93.182 44 3 0 1373 1416 101429011 101429054 7.290000e-07 65.8
18 TraesCS5B01G328400 chrUn 90.000 50 4 1 1229 1278 279044456 279044408 2.620000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G328400 chr5B 511851398 511854547 3149 False 5818.00 5818 100.0000 1 3150 1 chr5B.!!$F1 3149
1 TraesCS5B01G328400 chr5B 512212668 512213306 638 False 241.00 241 74.4530 1073 1744 1 chr5B.!!$F2 671
2 TraesCS5B01G328400 chr5A 537614986 537617666 2680 False 3096.00 3096 88.0590 221 2848 1 chr5A.!!$F1 2627
3 TraesCS5B01G328400 chr5A 649441467 649442150 683 False 339.00 339 76.4450 1085 1744 1 chr5A.!!$F3 659
4 TraesCS5B01G328400 chr5A 537626135 537626773 638 False 241.00 241 74.3780 1073 1744 1 chr5A.!!$F2 671
5 TraesCS5B01G328400 chr5D 423972080 423975127 3047 False 824.75 1969 87.9595 1 2854 4 chr5D.!!$F2 2853
6 TraesCS5B01G328400 chr5D 520910007 520910675 668 False 396.00 396 77.9090 1085 1744 1 chr5D.!!$F1 659
7 TraesCS5B01G328400 chr7B 709510754 709511440 686 False 296.00 296 75.0350 1073 1767 1 chr7B.!!$F1 694
8 TraesCS5B01G328400 chr7D 616223126 616223811 685 True 274.00 274 74.6140 1071 1767 1 chr7D.!!$R1 696
9 TraesCS5B01G328400 chr4B 474378599 474379235 636 False 219.00 219 73.6840 1103 1751 1 chr4B.!!$F1 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
947 1094 0.179121 TCATCGCGCAACCGTAATCT 60.179 50.0 8.75 0.0 36.67 2.40 F
1821 2028 0.040425 ACGTTTTCATGCAAGACGGC 60.040 50.0 18.13 0.0 37.99 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2039 0.028902 GTTGTTGGACGTGACAAGGC 59.971 55.0 0.00 0.00 36.52 4.35 R
2906 3248 0.105593 ATCATGTGTCGCTAGGCCAG 59.894 55.0 5.01 0.97 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.354704 CCGGGCACTCACAAGAAGATAA 60.355 50.000 0.00 0.00 0.00 1.75
36 37 3.559171 GGGCACTCACAAGAAGATAACCA 60.559 47.826 0.00 0.00 0.00 3.67
69 70 7.524294 TTTAGGACGACGGTTAAATATGAAC 57.476 36.000 0.00 0.00 0.00 3.18
70 71 5.075858 AGGACGACGGTTAAATATGAACA 57.924 39.130 0.00 0.00 0.00 3.18
74 75 6.903479 GGACGACGGTTAAATATGAACATTTC 59.097 38.462 0.00 0.00 30.84 2.17
84 85 2.772568 TGAACATTTCGGTGTTGCAG 57.227 45.000 6.50 0.00 42.08 4.41
89 90 3.900941 ACATTTCGGTGTTGCAGATTTC 58.099 40.909 0.00 0.00 0.00 2.17
103 104 3.731867 GCAGATTTCGGCAATTTCGATGT 60.732 43.478 2.09 0.00 37.03 3.06
107 108 2.610219 TCGGCAATTTCGATGTTGTG 57.390 45.000 10.72 5.66 0.00 3.33
118 119 4.159377 TCGATGTTGTGAATTTTGCTCC 57.841 40.909 0.00 0.00 0.00 4.70
148 149 5.509498 ACTTTGATGGCCTAAAATAGAGCA 58.491 37.500 3.32 0.00 0.00 4.26
149 150 6.131961 ACTTTGATGGCCTAAAATAGAGCAT 58.868 36.000 3.32 0.00 0.00 3.79
150 151 6.264067 ACTTTGATGGCCTAAAATAGAGCATC 59.736 38.462 3.32 0.00 0.00 3.91
248 295 5.556006 TGAACTGAGCATCCATGATGATA 57.444 39.130 8.21 0.00 38.85 2.15
257 304 1.215014 CCATGATGATACACGCGCGT 61.215 55.000 32.73 32.73 0.00 6.01
262 309 1.644295 GATGATACACGCGCGTCATAG 59.356 52.381 35.61 24.37 31.86 2.23
431 492 4.792804 GCAGACTGGCTCCCCTGC 62.793 72.222 4.26 0.00 44.00 4.85
440 501 3.579302 CTCCCCTGCAACCACCCA 61.579 66.667 0.00 0.00 0.00 4.51
441 502 3.868200 CTCCCCTGCAACCACCCAC 62.868 68.421 0.00 0.00 0.00 4.61
521 622 1.559682 ACATAACTTGATCAGCCCGGT 59.440 47.619 0.00 0.00 0.00 5.28
525 626 0.321653 ACTTGATCAGCCCGGTTCAC 60.322 55.000 0.00 0.00 0.00 3.18
534 635 2.094752 CAGCCCGGTTCACCAAATTAAG 60.095 50.000 0.00 0.00 35.14 1.85
545 646 9.090692 GGTTCACCAAATTAAGAAATCATCATG 57.909 33.333 0.00 0.00 35.64 3.07
576 681 1.195448 CAAGCCACTGCAAAGACGTAG 59.805 52.381 0.00 0.00 41.13 3.51
637 742 4.745125 ACCGCAAGTAATCATGAGTAATCG 59.255 41.667 4.12 4.76 0.00 3.34
639 744 4.376413 CGCAAGTAATCATGAGTAATCGCC 60.376 45.833 7.84 0.00 0.00 5.54
640 745 4.511454 GCAAGTAATCATGAGTAATCGCCA 59.489 41.667 4.12 0.00 0.00 5.69
641 746 5.180117 GCAAGTAATCATGAGTAATCGCCAT 59.820 40.000 4.12 0.00 0.00 4.40
643 748 5.858381 AGTAATCATGAGTAATCGCCATGT 58.142 37.500 4.12 0.00 38.88 3.21
644 749 5.928839 AGTAATCATGAGTAATCGCCATGTC 59.071 40.000 4.12 0.00 38.88 3.06
823 968 2.681778 CCACTGTCCCCGCTCTCT 60.682 66.667 0.00 0.00 0.00 3.10
824 969 2.716017 CCACTGTCCCCGCTCTCTC 61.716 68.421 0.00 0.00 0.00 3.20
825 970 1.680651 CACTGTCCCCGCTCTCTCT 60.681 63.158 0.00 0.00 0.00 3.10
826 971 1.379309 ACTGTCCCCGCTCTCTCTC 60.379 63.158 0.00 0.00 0.00 3.20
847 992 5.467399 TCTCACGCTAGCTCTCTTCTTATAC 59.533 44.000 13.93 0.00 0.00 1.47
889 1034 2.633657 GGCATTGCGCAGATACCG 59.366 61.111 11.31 0.00 45.17 4.02
910 1055 0.814410 CTTCCCGACCTCGATCGAGA 60.814 60.000 39.64 20.58 45.13 4.04
944 1091 1.061421 GAATTCATCGCGCAACCGTAA 59.939 47.619 8.75 0.00 36.67 3.18
947 1094 0.179121 TCATCGCGCAACCGTAATCT 60.179 50.000 8.75 0.00 36.67 2.40
948 1095 1.065851 TCATCGCGCAACCGTAATCTA 59.934 47.619 8.75 0.00 36.67 1.98
952 1099 1.533338 CGCGCAACCGTAATCTACTCT 60.533 52.381 8.75 0.00 36.67 3.24
953 1100 2.286595 CGCGCAACCGTAATCTACTCTA 60.287 50.000 8.75 0.00 36.67 2.43
960 1113 5.370875 ACCGTAATCTACTCTACTCACCT 57.629 43.478 0.00 0.00 0.00 4.00
964 1117 5.467399 CGTAATCTACTCTACTCACCTCCTG 59.533 48.000 0.00 0.00 0.00 3.86
970 1123 4.877773 ACTCTACTCACCTCCTGATCAAT 58.122 43.478 0.00 0.00 0.00 2.57
971 1124 6.019656 ACTCTACTCACCTCCTGATCAATA 57.980 41.667 0.00 0.00 0.00 1.90
974 1127 6.857848 TCTACTCACCTCCTGATCAATATCT 58.142 40.000 0.00 0.00 32.93 1.98
975 1128 7.301420 TCTACTCACCTCCTGATCAATATCTT 58.699 38.462 0.00 0.00 32.93 2.40
976 1129 6.172136 ACTCACCTCCTGATCAATATCTTG 57.828 41.667 0.00 0.00 32.93 3.02
978 1131 4.971282 TCACCTCCTGATCAATATCTTGGT 59.029 41.667 0.00 0.00 32.93 3.67
979 1132 5.061853 CACCTCCTGATCAATATCTTGGTG 58.938 45.833 0.00 5.27 35.11 4.17
980 1133 4.103785 ACCTCCTGATCAATATCTTGGTGG 59.896 45.833 12.17 12.17 41.05 4.61
982 1135 5.039920 TCCTGATCAATATCTTGGTGGTG 57.960 43.478 0.00 0.00 32.93 4.17
983 1136 4.139786 CCTGATCAATATCTTGGTGGTGG 58.860 47.826 0.00 0.00 32.93 4.61
984 1137 3.554934 TGATCAATATCTTGGTGGTGGC 58.445 45.455 0.00 0.00 32.93 5.01
985 1138 2.036958 TCAATATCTTGGTGGTGGCG 57.963 50.000 0.00 0.00 32.95 5.69
986 1139 0.381801 CAATATCTTGGTGGTGGCGC 59.618 55.000 0.00 0.00 0.00 6.53
987 1140 0.255890 AATATCTTGGTGGTGGCGCT 59.744 50.000 7.64 0.00 0.00 5.92
988 1141 0.464373 ATATCTTGGTGGTGGCGCTG 60.464 55.000 7.64 0.00 0.00 5.18
989 1142 1.549243 TATCTTGGTGGTGGCGCTGA 61.549 55.000 7.64 0.00 0.00 4.26
990 1143 3.357079 CTTGGTGGTGGCGCTGAC 61.357 66.667 7.64 4.23 0.00 3.51
991 1144 3.832237 CTTGGTGGTGGCGCTGACT 62.832 63.158 7.64 0.00 0.00 3.41
992 1145 4.624364 TGGTGGTGGCGCTGACTG 62.624 66.667 7.64 0.00 0.00 3.51
996 1149 4.996434 GGTGGCGCTGACTGCACT 62.996 66.667 7.64 0.00 43.06 4.40
997 1150 3.720193 GTGGCGCTGACTGCACTG 61.720 66.667 7.64 0.00 43.06 3.66
1000 1153 3.653009 GCGCTGACTGCACTGCAA 61.653 61.111 4.99 0.00 43.06 4.08
1001 1154 2.974489 GCGCTGACTGCACTGCAAT 61.974 57.895 4.99 0.00 43.06 3.56
1002 1155 1.154282 CGCTGACTGCACTGCAATG 60.154 57.895 4.99 0.00 43.06 2.82
1003 1156 1.211969 GCTGACTGCACTGCAATGG 59.788 57.895 4.99 0.00 38.41 3.16
1009 1162 2.177531 GCACTGCAATGGCGACTG 59.822 61.111 0.00 0.00 45.35 3.51
1025 1178 4.783621 TGGCCCGCTGATGCTCAC 62.784 66.667 0.00 0.00 36.97 3.51
1030 1183 3.250323 CGCTGATGCTCACCGTCG 61.250 66.667 0.00 0.00 36.97 5.12
1033 1186 4.451150 TGATGCTCACCGTCGCCC 62.451 66.667 0.00 0.00 31.85 6.13
1039 1195 4.671590 TCACCGTCGCCCTCCTCA 62.672 66.667 0.00 0.00 0.00 3.86
1042 1198 3.147595 CCGTCGCCCTCCTCATCA 61.148 66.667 0.00 0.00 0.00 3.07
1491 1680 4.309950 GACCTGAACGGGCCGTGT 62.310 66.667 34.87 25.76 39.99 4.49
1683 1879 1.094073 ACAGCTACGCCTACGACGAT 61.094 55.000 0.00 0.00 43.93 3.73
1705 1901 2.352805 CCTCCACCTTCACCTGCC 59.647 66.667 0.00 0.00 0.00 4.85
1779 1986 3.800506 GGTAACTCGTCCATAACCATTCG 59.199 47.826 0.00 0.00 0.00 3.34
1785 1992 2.286359 CGTCCATAACCATTCGTGCATG 60.286 50.000 0.00 0.00 0.00 4.06
1787 1994 1.404748 CCATAACCATTCGTGCATGCA 59.595 47.619 18.46 18.46 0.00 3.96
1803 2010 2.992313 CATACGTACGCGGCACAC 59.008 61.111 16.72 1.34 43.45 3.82
1811 2018 2.251075 CGCGGCACACGTTTTCAT 59.749 55.556 0.00 0.00 46.52 2.57
1812 2019 2.074353 CGCGGCACACGTTTTCATG 61.074 57.895 0.00 0.00 46.52 3.07
1813 2020 2.364311 GCGGCACACGTTTTCATGC 61.364 57.895 0.00 0.00 46.52 4.06
1814 2021 1.009108 CGGCACACGTTTTCATGCA 60.009 52.632 0.00 0.00 39.92 3.96
1815 2022 0.593518 CGGCACACGTTTTCATGCAA 60.594 50.000 0.00 0.00 39.92 4.08
1816 2023 1.130955 GGCACACGTTTTCATGCAAG 58.869 50.000 0.00 0.00 39.92 4.01
1817 2024 1.268999 GGCACACGTTTTCATGCAAGA 60.269 47.619 0.00 0.00 39.92 3.02
1818 2025 1.780860 GCACACGTTTTCATGCAAGAC 59.219 47.619 0.00 0.00 38.00 3.01
1819 2026 2.036217 CACACGTTTTCATGCAAGACG 58.964 47.619 14.71 14.71 39.43 4.18
1820 2027 1.002900 ACACGTTTTCATGCAAGACGG 60.003 47.619 18.13 12.43 37.99 4.79
1821 2028 0.040425 ACGTTTTCATGCAAGACGGC 60.040 50.000 18.13 0.00 37.99 5.68
1822 2029 1.059657 CGTTTTCATGCAAGACGGCG 61.060 55.000 4.80 4.80 36.28 6.46
1823 2030 0.040425 GTTTTCATGCAAGACGGCGT 60.040 50.000 14.65 14.65 36.28 5.68
1824 2031 0.237235 TTTTCATGCAAGACGGCGTC 59.763 50.000 31.33 31.33 36.28 5.19
1825 2032 1.573829 TTTCATGCAAGACGGCGTCC 61.574 55.000 34.04 20.50 36.28 4.79
1826 2033 2.723586 TTCATGCAAGACGGCGTCCA 62.724 55.000 34.04 25.20 36.28 4.02
1918 2129 1.734477 CAGCCTCAAGTCGTCCGTG 60.734 63.158 0.00 0.00 0.00 4.94
1933 2144 3.406361 GTGGTGAGCACGAGCACG 61.406 66.667 7.77 0.76 45.49 5.34
1993 2204 3.851128 GTCTCCTACCTGGGCCGC 61.851 72.222 0.00 0.00 36.20 6.53
2080 2309 4.838152 TCCCTCGCAATCGCAGCC 62.838 66.667 0.00 0.00 38.40 4.85
2105 2334 2.356313 CGTTCACGTGGCTCTGCT 60.356 61.111 17.00 0.00 34.11 4.24
2152 2381 2.096248 CTTCTGTCTCCGTCCTAGCTT 58.904 52.381 0.00 0.00 0.00 3.74
2153 2382 3.280295 CTTCTGTCTCCGTCCTAGCTTA 58.720 50.000 0.00 0.00 0.00 3.09
2154 2383 2.920524 TCTGTCTCCGTCCTAGCTTAG 58.079 52.381 0.00 0.00 0.00 2.18
2155 2384 1.335496 CTGTCTCCGTCCTAGCTTAGC 59.665 57.143 0.00 0.00 0.00 3.09
2156 2385 1.064611 TGTCTCCGTCCTAGCTTAGCT 60.065 52.381 12.67 12.67 43.41 3.32
2157 2386 2.172082 TGTCTCCGTCCTAGCTTAGCTA 59.828 50.000 13.70 13.70 40.44 3.32
2253 2508 0.107456 CCTCGGGCCGTAGTAGTAGA 59.893 60.000 27.32 1.28 0.00 2.59
2259 2514 3.220940 GGGCCGTAGTAGTAGAATCACT 58.779 50.000 0.00 0.00 0.00 3.41
2291 2546 7.596995 AGATTATTGTAGCGAGTCTGATTTAGC 59.403 37.037 0.00 0.00 0.00 3.09
2292 2547 4.450082 TTGTAGCGAGTCTGATTTAGCA 57.550 40.909 0.00 0.00 0.00 3.49
2374 2636 3.931578 ACCAGCTTGTCATCTGTACTTC 58.068 45.455 0.00 0.00 0.00 3.01
2405 2675 3.771577 TTGAAGGAGAGAAGGGAACAC 57.228 47.619 0.00 0.00 0.00 3.32
2570 2900 0.319211 TGGTTACTGCTTGTCCGTCG 60.319 55.000 0.00 0.00 0.00 5.12
2591 2926 2.217038 TCAGGTCAGGTCAGGTGGC 61.217 63.158 0.00 0.00 0.00 5.01
2653 2988 0.179163 TCAGTCGCGCATGTGTCTAG 60.179 55.000 8.75 0.00 0.00 2.43
2664 2999 3.426525 GCATGTGTCTAGTTGCAAAAAGC 59.573 43.478 0.00 0.00 45.96 3.51
2693 3033 1.395826 ATGTGTCCTCCGGCTCTAGC 61.396 60.000 0.00 0.00 41.14 3.42
2703 3043 1.067915 CCGGCTCTAGCTAGATTCTGC 60.068 57.143 23.48 21.16 41.70 4.26
2724 3064 3.254166 GCTGAATCTTGGCTCAAAGTTGA 59.746 43.478 0.00 0.00 35.57 3.18
2738 3079 1.692411 AGTTGAAAGTTGCTCCACCC 58.308 50.000 0.00 0.00 0.00 4.61
2788 3129 8.289618 TCTTCTTTTGATCTGTTTTGTAATCCG 58.710 33.333 0.00 0.00 0.00 4.18
2824 3166 3.797039 TGATTAGATTCTTGTGGAGCCG 58.203 45.455 0.00 0.00 0.00 5.52
2831 3173 1.302033 CTTGTGGAGCCGCTTGTCT 60.302 57.895 0.00 0.00 0.00 3.41
2836 3178 3.184683 GAGCCGCTTGTCTGCTCG 61.185 66.667 0.00 0.00 41.13 5.03
2849 3191 0.806868 CTGCTCGAAATGTGGCACAT 59.193 50.000 26.78 26.78 44.52 3.21
2854 3196 3.205338 CTCGAAATGTGGCACATATCCA 58.795 45.455 31.58 15.88 39.91 3.41
2855 3197 3.615155 TCGAAATGTGGCACATATCCAA 58.385 40.909 31.58 14.59 39.91 3.53
2856 3198 3.627123 TCGAAATGTGGCACATATCCAAG 59.373 43.478 31.58 19.06 39.91 3.61
2857 3199 3.243168 CGAAATGTGGCACATATCCAAGG 60.243 47.826 31.58 13.76 39.91 3.61
2858 3200 2.369983 ATGTGGCACATATCCAAGGG 57.630 50.000 30.56 0.00 44.52 3.95
2859 3201 0.258484 TGTGGCACATATCCAAGGGG 59.742 55.000 17.96 0.00 44.52 4.79
2860 3202 0.550914 GTGGCACATATCCAAGGGGA 59.449 55.000 13.86 0.00 45.97 4.81
2868 3210 4.917476 TCCAAGGGGATCTGAGCA 57.083 55.556 0.00 0.00 38.64 4.26
2869 3211 3.347158 TCCAAGGGGATCTGAGCAT 57.653 52.632 0.00 0.00 38.64 3.79
2870 3212 1.135094 TCCAAGGGGATCTGAGCATC 58.865 55.000 0.00 0.00 38.64 3.91
2871 3213 0.250209 CCAAGGGGATCTGAGCATCG 60.250 60.000 0.00 0.00 34.42 3.84
2872 3214 0.250209 CAAGGGGATCTGAGCATCGG 60.250 60.000 0.00 0.00 44.94 4.18
2873 3215 1.414061 AAGGGGATCTGAGCATCGGG 61.414 60.000 0.00 0.00 43.33 5.14
2874 3216 2.746359 GGGATCTGAGCATCGGGG 59.254 66.667 0.00 0.00 43.33 5.73
2875 3217 1.838846 GGGATCTGAGCATCGGGGA 60.839 63.158 0.00 0.00 43.33 4.81
2876 3218 1.670590 GGATCTGAGCATCGGGGAG 59.329 63.158 0.00 0.00 43.33 4.30
2877 3219 1.005156 GATCTGAGCATCGGGGAGC 60.005 63.158 0.00 0.00 43.33 4.70
2878 3220 1.459158 ATCTGAGCATCGGGGAGCT 60.459 57.895 0.00 0.00 43.33 4.09
2879 3221 1.756408 ATCTGAGCATCGGGGAGCTG 61.756 60.000 0.00 0.00 43.33 4.24
2880 3222 4.166888 TGAGCATCGGGGAGCTGC 62.167 66.667 0.00 0.00 42.04 5.25
2881 3223 4.166888 GAGCATCGGGGAGCTGCA 62.167 66.667 7.79 0.00 43.90 4.41
2882 3224 3.687321 GAGCATCGGGGAGCTGCAA 62.687 63.158 7.79 0.00 43.90 4.08
2883 3225 3.512516 GCATCGGGGAGCTGCAAC 61.513 66.667 7.79 0.00 41.32 4.17
2884 3226 2.270205 CATCGGGGAGCTGCAACT 59.730 61.111 7.79 0.00 0.00 3.16
2885 3227 1.377725 CATCGGGGAGCTGCAACTT 60.378 57.895 7.79 0.00 0.00 2.66
2886 3228 1.377725 ATCGGGGAGCTGCAACTTG 60.378 57.895 7.79 0.00 0.00 3.16
2887 3229 2.826777 ATCGGGGAGCTGCAACTTGG 62.827 60.000 7.79 0.00 0.00 3.61
2888 3230 3.376918 GGGGAGCTGCAACTTGGC 61.377 66.667 7.79 0.00 0.00 4.52
2889 3231 3.376918 GGGAGCTGCAACTTGGCC 61.377 66.667 7.79 0.00 0.00 5.36
2890 3232 2.282745 GGAGCTGCAACTTGGCCT 60.283 61.111 3.32 0.00 0.00 5.19
2891 3233 2.338785 GGAGCTGCAACTTGGCCTC 61.339 63.158 3.32 0.00 0.00 4.70
2892 3234 2.670934 AGCTGCAACTTGGCCTCG 60.671 61.111 3.32 0.00 0.00 4.63
2893 3235 4.410743 GCTGCAACTTGGCCTCGC 62.411 66.667 3.32 0.00 0.00 5.03
2894 3236 2.670934 CTGCAACTTGGCCTCGCT 60.671 61.111 3.32 0.00 0.00 4.93
2895 3237 1.375908 CTGCAACTTGGCCTCGCTA 60.376 57.895 3.32 0.00 0.00 4.26
2896 3238 1.639298 CTGCAACTTGGCCTCGCTAC 61.639 60.000 3.32 0.00 0.00 3.58
2897 3239 2.399356 GCAACTTGGCCTCGCTACC 61.399 63.158 3.32 0.00 0.00 3.18
2898 3240 1.296715 CAACTTGGCCTCGCTACCT 59.703 57.895 3.32 0.00 0.00 3.08
2899 3241 0.741221 CAACTTGGCCTCGCTACCTC 60.741 60.000 3.32 0.00 0.00 3.85
2900 3242 1.900545 AACTTGGCCTCGCTACCTCC 61.901 60.000 3.32 0.00 0.00 4.30
2901 3243 3.432051 CTTGGCCTCGCTACCTCCG 62.432 68.421 3.32 0.00 0.00 4.63
2904 3246 4.208686 GCCTCGCTACCTCCGGTG 62.209 72.222 0.00 0.00 36.19 4.94
2905 3247 4.208686 CCTCGCTACCTCCGGTGC 62.209 72.222 0.00 0.00 36.19 5.01
2906 3248 4.208686 CTCGCTACCTCCGGTGCC 62.209 72.222 0.00 0.00 36.19 5.01
2907 3249 4.753662 TCGCTACCTCCGGTGCCT 62.754 66.667 0.00 0.00 36.19 4.75
2908 3250 4.514577 CGCTACCTCCGGTGCCTG 62.515 72.222 0.00 0.00 36.19 4.85
2909 3251 4.162690 GCTACCTCCGGTGCCTGG 62.163 72.222 0.00 0.00 36.19 4.45
2910 3252 4.162690 CTACCTCCGGTGCCTGGC 62.163 72.222 12.87 12.87 36.19 4.85
2914 3256 3.854669 CTCCGGTGCCTGGCCTAG 61.855 72.222 17.53 6.81 0.00 3.02
2918 3260 4.840005 GGTGCCTGGCCTAGCGAC 62.840 72.222 17.53 6.10 0.00 5.19
2919 3261 4.082523 GTGCCTGGCCTAGCGACA 62.083 66.667 17.53 0.00 0.00 4.35
2920 3262 4.082523 TGCCTGGCCTAGCGACAC 62.083 66.667 17.53 0.00 0.00 3.67
2921 3263 4.082523 GCCTGGCCTAGCGACACA 62.083 66.667 7.66 0.00 0.00 3.72
2922 3264 2.903357 CCTGGCCTAGCGACACAT 59.097 61.111 3.32 0.00 0.00 3.21
2923 3265 1.522355 CCTGGCCTAGCGACACATG 60.522 63.158 3.32 0.00 0.00 3.21
2924 3266 1.517361 CTGGCCTAGCGACACATGA 59.483 57.895 3.32 0.00 0.00 3.07
2925 3267 0.105593 CTGGCCTAGCGACACATGAT 59.894 55.000 3.32 0.00 0.00 2.45
2926 3268 0.541392 TGGCCTAGCGACACATGATT 59.459 50.000 3.32 0.00 0.00 2.57
2927 3269 1.065491 TGGCCTAGCGACACATGATTT 60.065 47.619 3.32 0.00 0.00 2.17
2928 3270 2.017049 GGCCTAGCGACACATGATTTT 58.983 47.619 0.00 0.00 0.00 1.82
2929 3271 2.223340 GGCCTAGCGACACATGATTTTG 60.223 50.000 0.00 0.00 0.00 2.44
2930 3272 2.792542 GCCTAGCGACACATGATTTTGC 60.793 50.000 0.00 0.00 0.00 3.68
2931 3273 2.419673 CCTAGCGACACATGATTTTGCA 59.580 45.455 0.00 0.00 0.00 4.08
2932 3274 3.065786 CCTAGCGACACATGATTTTGCAT 59.934 43.478 0.00 0.00 0.00 3.96
2933 3275 3.141002 AGCGACACATGATTTTGCATC 57.859 42.857 0.00 0.00 0.00 3.91
2934 3276 1.841944 GCGACACATGATTTTGCATCG 59.158 47.619 0.00 0.00 33.03 3.84
2935 3277 2.443387 CGACACATGATTTTGCATCGG 58.557 47.619 0.00 0.00 0.00 4.18
2936 3278 2.159531 CGACACATGATTTTGCATCGGT 60.160 45.455 0.00 0.00 0.00 4.69
2937 3279 3.173599 GACACATGATTTTGCATCGGTG 58.826 45.455 0.00 0.00 34.35 4.94
2938 3280 2.557924 ACACATGATTTTGCATCGGTGT 59.442 40.909 0.00 9.13 35.67 4.16
2939 3281 3.005684 ACACATGATTTTGCATCGGTGTT 59.994 39.130 0.00 0.00 36.46 3.32
2940 3282 3.609373 CACATGATTTTGCATCGGTGTTC 59.391 43.478 0.00 0.00 0.00 3.18
2941 3283 3.181397 CATGATTTTGCATCGGTGTTCC 58.819 45.455 0.00 0.00 0.00 3.62
2942 3284 2.234143 TGATTTTGCATCGGTGTTCCA 58.766 42.857 0.00 0.00 0.00 3.53
2943 3285 2.228582 TGATTTTGCATCGGTGTTCCAG 59.771 45.455 0.00 0.00 0.00 3.86
2944 3286 1.974265 TTTTGCATCGGTGTTCCAGA 58.026 45.000 0.00 0.00 0.00 3.86
2945 3287 1.522668 TTTGCATCGGTGTTCCAGAG 58.477 50.000 0.00 0.00 0.00 3.35
2946 3288 0.955428 TTGCATCGGTGTTCCAGAGC 60.955 55.000 0.00 0.00 0.00 4.09
2947 3289 1.375908 GCATCGGTGTTCCAGAGCA 60.376 57.895 0.00 0.00 0.00 4.26
2948 3290 0.955428 GCATCGGTGTTCCAGAGCAA 60.955 55.000 0.00 0.00 0.00 3.91
2949 3291 0.798776 CATCGGTGTTCCAGAGCAAC 59.201 55.000 0.00 0.00 0.00 4.17
2950 3292 3.244105 CGGTGTTCCAGAGCAACG 58.756 61.111 7.54 7.54 45.42 4.10
2951 3293 1.594293 CGGTGTTCCAGAGCAACGT 60.594 57.895 13.01 0.00 45.56 3.99
2952 3294 1.157870 CGGTGTTCCAGAGCAACGTT 61.158 55.000 13.01 0.00 45.56 3.99
2953 3295 1.870580 CGGTGTTCCAGAGCAACGTTA 60.871 52.381 13.01 0.00 45.56 3.18
2954 3296 2.423577 GGTGTTCCAGAGCAACGTTAT 58.576 47.619 0.00 0.00 0.00 1.89
2955 3297 3.592059 GGTGTTCCAGAGCAACGTTATA 58.408 45.455 0.00 0.00 0.00 0.98
2956 3298 3.617263 GGTGTTCCAGAGCAACGTTATAG 59.383 47.826 0.00 0.00 0.00 1.31
2957 3299 4.243270 GTGTTCCAGAGCAACGTTATAGT 58.757 43.478 0.00 0.00 0.00 2.12
2958 3300 4.091509 GTGTTCCAGAGCAACGTTATAGTG 59.908 45.833 0.00 0.00 0.00 2.74
2959 3301 4.243270 GTTCCAGAGCAACGTTATAGTGT 58.757 43.478 0.00 0.00 0.00 3.55
2960 3302 3.845178 TCCAGAGCAACGTTATAGTGTG 58.155 45.455 0.00 0.00 0.00 3.82
2961 3303 2.348666 CCAGAGCAACGTTATAGTGTGC 59.651 50.000 0.00 0.00 0.00 4.57
2962 3304 2.993220 CAGAGCAACGTTATAGTGTGCA 59.007 45.455 0.00 0.00 0.00 4.57
2963 3305 3.618594 CAGAGCAACGTTATAGTGTGCAT 59.381 43.478 0.00 0.00 0.00 3.96
2964 3306 4.803613 CAGAGCAACGTTATAGTGTGCATA 59.196 41.667 0.00 0.00 0.00 3.14
2965 3307 4.804139 AGAGCAACGTTATAGTGTGCATAC 59.196 41.667 5.29 5.29 0.00 2.39
2966 3308 4.500127 AGCAACGTTATAGTGTGCATACA 58.500 39.130 16.44 2.43 0.00 2.29
2967 3309 5.116180 AGCAACGTTATAGTGTGCATACAT 58.884 37.500 16.44 9.54 39.39 2.29
2968 3310 5.006649 AGCAACGTTATAGTGTGCATACATG 59.993 40.000 16.44 3.04 39.39 3.21
2969 3311 5.006261 GCAACGTTATAGTGTGCATACATGA 59.994 40.000 16.44 0.89 39.39 3.07
2970 3312 6.456315 GCAACGTTATAGTGTGCATACATGAA 60.456 38.462 16.44 3.41 39.39 2.57
2971 3313 7.460296 CAACGTTATAGTGTGCATACATGAAA 58.540 34.615 16.44 1.89 39.39 2.69
2972 3314 7.603963 ACGTTATAGTGTGCATACATGAAAA 57.396 32.000 16.44 0.18 39.39 2.29
2973 3315 8.208718 ACGTTATAGTGTGCATACATGAAAAT 57.791 30.769 16.44 2.36 39.39 1.82
2974 3316 8.335356 ACGTTATAGTGTGCATACATGAAAATC 58.665 33.333 16.44 0.00 39.39 2.17
2975 3317 8.334632 CGTTATAGTGTGCATACATGAAAATCA 58.665 33.333 16.44 0.00 39.39 2.57
2978 3320 5.404946 AGTGTGCATACATGAAAATCAAGC 58.595 37.500 16.44 0.00 39.39 4.01
2979 3321 5.047872 AGTGTGCATACATGAAAATCAAGCA 60.048 36.000 16.44 0.00 39.39 3.91
2980 3322 5.287752 GTGTGCATACATGAAAATCAAGCAG 59.712 40.000 8.93 0.00 39.39 4.24
2981 3323 5.183522 TGTGCATACATGAAAATCAAGCAGA 59.816 36.000 0.00 0.00 0.00 4.26
2982 3324 6.127563 TGTGCATACATGAAAATCAAGCAGAT 60.128 34.615 0.00 0.00 39.09 2.90
2983 3325 6.198403 GTGCATACATGAAAATCAAGCAGATG 59.802 38.462 0.00 0.00 36.96 2.90
2984 3326 6.095720 TGCATACATGAAAATCAAGCAGATGA 59.904 34.615 0.00 0.00 36.96 2.92
2985 3327 7.145985 GCATACATGAAAATCAAGCAGATGAT 58.854 34.615 0.00 0.00 41.74 2.45
2986 3328 8.294577 GCATACATGAAAATCAAGCAGATGATA 58.705 33.333 0.00 0.00 39.08 2.15
2990 3332 9.132923 ACATGAAAATCAAGCAGATGATAATCT 57.867 29.630 0.00 0.00 39.08 2.40
2994 3336 9.557338 GAAAATCAAGCAGATGATAATCTATGC 57.443 33.333 0.00 0.00 39.08 3.14
2995 3337 8.631480 AAATCAAGCAGATGATAATCTATGCA 57.369 30.769 6.97 0.00 39.08 3.96
2996 3338 8.631480 AATCAAGCAGATGATAATCTATGCAA 57.369 30.769 6.97 0.00 39.08 4.08
2997 3339 8.809468 ATCAAGCAGATGATAATCTATGCAAT 57.191 30.769 6.97 0.00 38.25 3.56
2998 3340 8.265165 TCAAGCAGATGATAATCTATGCAATC 57.735 34.615 6.97 0.00 0.00 2.67
2999 3341 7.881232 TCAAGCAGATGATAATCTATGCAATCA 59.119 33.333 6.97 0.00 33.20 2.57
3000 3342 8.512138 CAAGCAGATGATAATCTATGCAATCAA 58.488 33.333 6.97 0.00 32.47 2.57
3001 3343 8.809468 AGCAGATGATAATCTATGCAATCAAT 57.191 30.769 6.97 0.00 32.47 2.57
3002 3344 8.678199 AGCAGATGATAATCTATGCAATCAATG 58.322 33.333 6.97 4.85 32.47 2.82
3003 3345 7.915923 GCAGATGATAATCTATGCAATCAATGG 59.084 37.037 0.88 0.00 32.47 3.16
3004 3346 7.915923 CAGATGATAATCTATGCAATCAATGGC 59.084 37.037 0.88 0.00 32.47 4.40
3005 3347 7.834681 AGATGATAATCTATGCAATCAATGGCT 59.165 33.333 0.88 0.00 32.47 4.75
3006 3348 7.770366 TGATAATCTATGCAATCAATGGCTT 57.230 32.000 0.00 0.00 0.00 4.35
3007 3349 8.866970 TGATAATCTATGCAATCAATGGCTTA 57.133 30.769 0.00 0.00 0.00 3.09
3008 3350 9.470399 TGATAATCTATGCAATCAATGGCTTAT 57.530 29.630 0.00 0.00 0.00 1.73
3011 3353 6.964807 TCTATGCAATCAATGGCTTATTGT 57.035 33.333 11.95 1.15 45.17 2.71
3012 3354 7.350744 TCTATGCAATCAATGGCTTATTGTT 57.649 32.000 11.95 3.99 45.17 2.83
3013 3355 7.204604 TCTATGCAATCAATGGCTTATTGTTG 58.795 34.615 11.95 14.23 45.17 3.33
3014 3356 5.402997 TGCAATCAATGGCTTATTGTTGA 57.597 34.783 19.84 0.00 45.17 3.18
3015 3357 5.791666 TGCAATCAATGGCTTATTGTTGAA 58.208 33.333 19.84 13.54 45.17 2.69
3016 3358 5.638657 TGCAATCAATGGCTTATTGTTGAAC 59.361 36.000 19.84 0.00 45.17 3.18
3017 3359 5.063817 GCAATCAATGGCTTATTGTTGAACC 59.936 40.000 19.84 0.00 45.17 3.62
3018 3360 5.999205 ATCAATGGCTTATTGTTGAACCA 57.001 34.783 11.95 0.00 45.17 3.67
3019 3361 5.999205 TCAATGGCTTATTGTTGAACCAT 57.001 34.783 11.95 0.00 45.17 3.55
3020 3362 7.658525 ATCAATGGCTTATTGTTGAACCATA 57.341 32.000 11.95 0.00 45.17 2.74
3021 3363 6.862209 TCAATGGCTTATTGTTGAACCATAC 58.138 36.000 11.95 0.00 45.17 2.39
3022 3364 6.663093 TCAATGGCTTATTGTTGAACCATACT 59.337 34.615 11.95 0.00 45.17 2.12
3023 3365 6.699575 ATGGCTTATTGTTGAACCATACTC 57.300 37.500 0.00 0.00 36.16 2.59
3024 3366 5.565509 TGGCTTATTGTTGAACCATACTCA 58.434 37.500 0.00 0.00 0.00 3.41
3025 3367 5.647658 TGGCTTATTGTTGAACCATACTCAG 59.352 40.000 0.00 0.00 0.00 3.35
3026 3368 5.648092 GGCTTATTGTTGAACCATACTCAGT 59.352 40.000 0.00 0.00 0.00 3.41
3027 3369 6.151144 GGCTTATTGTTGAACCATACTCAGTT 59.849 38.462 0.00 0.00 0.00 3.16
3028 3370 7.335924 GGCTTATTGTTGAACCATACTCAGTTA 59.664 37.037 0.00 0.00 0.00 2.24
3029 3371 8.893727 GCTTATTGTTGAACCATACTCAGTTAT 58.106 33.333 0.00 0.00 0.00 1.89
3032 3374 8.732746 ATTGTTGAACCATACTCAGTTATACC 57.267 34.615 0.00 0.00 0.00 2.73
3033 3375 7.247456 TGTTGAACCATACTCAGTTATACCA 57.753 36.000 0.00 0.00 0.00 3.25
3034 3376 7.857456 TGTTGAACCATACTCAGTTATACCAT 58.143 34.615 0.00 0.00 0.00 3.55
3035 3377 7.985184 TGTTGAACCATACTCAGTTATACCATC 59.015 37.037 0.00 0.00 0.00 3.51
3036 3378 7.669089 TGAACCATACTCAGTTATACCATCA 57.331 36.000 0.00 0.00 0.00 3.07
3037 3379 8.262601 TGAACCATACTCAGTTATACCATCAT 57.737 34.615 0.00 0.00 0.00 2.45
3038 3380 8.713971 TGAACCATACTCAGTTATACCATCATT 58.286 33.333 0.00 0.00 0.00 2.57
3056 3398 7.550196 ACCATCATTATTTGTTTCCTTGAATGC 59.450 33.333 0.00 0.00 0.00 3.56
3057 3399 7.767198 CCATCATTATTTGTTTCCTTGAATGCT 59.233 33.333 0.00 0.00 0.00 3.79
3058 3400 9.158233 CATCATTATTTGTTTCCTTGAATGCTT 57.842 29.630 0.00 0.00 0.00 3.91
3059 3401 8.537049 TCATTATTTGTTTCCTTGAATGCTTG 57.463 30.769 0.00 0.00 0.00 4.01
3060 3402 6.783892 TTATTTGTTTCCTTGAATGCTTGC 57.216 33.333 0.00 0.00 0.00 4.01
3061 3403 4.405116 TTTGTTTCCTTGAATGCTTGCT 57.595 36.364 0.00 0.00 0.00 3.91
3062 3404 4.405116 TTGTTTCCTTGAATGCTTGCTT 57.595 36.364 0.00 0.00 0.00 3.91
3063 3405 4.405116 TGTTTCCTTGAATGCTTGCTTT 57.595 36.364 0.00 0.00 0.00 3.51
3064 3406 5.528043 TGTTTCCTTGAATGCTTGCTTTA 57.472 34.783 0.00 0.00 0.00 1.85
3065 3407 5.911752 TGTTTCCTTGAATGCTTGCTTTAA 58.088 33.333 0.00 0.00 0.00 1.52
3066 3408 5.984926 TGTTTCCTTGAATGCTTGCTTTAAG 59.015 36.000 0.00 0.00 39.49 1.85
3081 3423 5.132437 GCTTTAAGCAGTTGACGTATCTC 57.868 43.478 12.54 0.00 41.89 2.75
3082 3424 4.033014 GCTTTAAGCAGTTGACGTATCTCC 59.967 45.833 12.54 0.00 41.89 3.71
3083 3425 4.794278 TTAAGCAGTTGACGTATCTCCA 57.206 40.909 0.00 0.00 0.00 3.86
3084 3426 3.678056 AAGCAGTTGACGTATCTCCAA 57.322 42.857 0.00 0.00 0.00 3.53
3085 3427 2.960819 AGCAGTTGACGTATCTCCAAC 58.039 47.619 8.57 8.57 40.14 3.77
3086 3428 1.654105 GCAGTTGACGTATCTCCAACG 59.346 52.381 10.34 7.57 43.39 4.10
3093 3435 1.636988 CGTATCTCCAACGTTGACCC 58.363 55.000 29.35 9.55 35.66 4.46
3094 3436 1.203994 CGTATCTCCAACGTTGACCCT 59.796 52.381 29.35 13.18 35.66 4.34
3095 3437 2.734492 CGTATCTCCAACGTTGACCCTC 60.734 54.545 29.35 13.09 35.66 4.30
3096 3438 1.348064 ATCTCCAACGTTGACCCTCA 58.652 50.000 29.35 7.26 0.00 3.86
3097 3439 1.124780 TCTCCAACGTTGACCCTCAA 58.875 50.000 29.35 4.79 33.32 3.02
3098 3440 1.487142 TCTCCAACGTTGACCCTCAAA 59.513 47.619 29.35 3.26 38.22 2.69
3099 3441 1.602377 CTCCAACGTTGACCCTCAAAC 59.398 52.381 29.35 0.00 38.22 2.93
3100 3442 1.065345 TCCAACGTTGACCCTCAAACA 60.065 47.619 29.35 0.00 38.22 2.83
3101 3443 1.333619 CCAACGTTGACCCTCAAACAG 59.666 52.381 29.35 4.16 38.22 3.16
3102 3444 1.021968 AACGTTGACCCTCAAACAGC 58.978 50.000 0.00 0.00 38.22 4.40
3103 3445 0.818040 ACGTTGACCCTCAAACAGCC 60.818 55.000 0.00 0.00 38.22 4.85
3104 3446 1.515521 CGTTGACCCTCAAACAGCCC 61.516 60.000 0.00 0.00 38.22 5.19
3105 3447 1.228124 TTGACCCTCAAACAGCCCG 60.228 57.895 0.00 0.00 32.71 6.13
3106 3448 3.056328 GACCCTCAAACAGCCCGC 61.056 66.667 0.00 0.00 0.00 6.13
3107 3449 3.842925 GACCCTCAAACAGCCCGCA 62.843 63.158 0.00 0.00 0.00 5.69
3108 3450 2.597217 CCCTCAAACAGCCCGCAA 60.597 61.111 0.00 0.00 0.00 4.85
3109 3451 2.644992 CCTCAAACAGCCCGCAAC 59.355 61.111 0.00 0.00 0.00 4.17
3110 3452 2.644992 CTCAAACAGCCCGCAACC 59.355 61.111 0.00 0.00 0.00 3.77
3111 3453 2.124109 TCAAACAGCCCGCAACCA 60.124 55.556 0.00 0.00 0.00 3.67
3112 3454 1.526575 CTCAAACAGCCCGCAACCAT 61.527 55.000 0.00 0.00 0.00 3.55
3113 3455 1.112315 TCAAACAGCCCGCAACCATT 61.112 50.000 0.00 0.00 0.00 3.16
3114 3456 0.249826 CAAACAGCCCGCAACCATTT 60.250 50.000 0.00 0.00 0.00 2.32
3115 3457 0.249826 AAACAGCCCGCAACCATTTG 60.250 50.000 0.00 0.00 35.62 2.32
3116 3458 1.112315 AACAGCCCGCAACCATTTGA 61.112 50.000 0.00 0.00 34.24 2.69
3117 3459 1.112315 ACAGCCCGCAACCATTTGAA 61.112 50.000 0.00 0.00 34.24 2.69
3118 3460 0.667184 CAGCCCGCAACCATTTGAAC 60.667 55.000 0.00 0.00 34.24 3.18
3119 3461 1.374125 GCCCGCAACCATTTGAACC 60.374 57.895 0.00 0.00 34.24 3.62
3120 3462 2.045280 CCCGCAACCATTTGAACCA 58.955 52.632 0.00 0.00 34.24 3.67
3121 3463 0.319469 CCCGCAACCATTTGAACCAC 60.319 55.000 0.00 0.00 34.24 4.16
3122 3464 0.387202 CCGCAACCATTTGAACCACA 59.613 50.000 0.00 0.00 34.24 4.17
3123 3465 1.486439 CGCAACCATTTGAACCACAC 58.514 50.000 0.00 0.00 34.24 3.82
3124 3466 1.486439 GCAACCATTTGAACCACACG 58.514 50.000 0.00 0.00 34.24 4.49
3125 3467 1.867698 GCAACCATTTGAACCACACGG 60.868 52.381 0.00 0.00 34.24 4.94
3126 3468 4.415719 GCAACCATTTGAACCACACGGT 62.416 50.000 0.00 0.00 39.29 4.83
3134 3476 3.885814 ACCACACGGTCCAGACAT 58.114 55.556 0.00 0.00 44.71 3.06
3135 3477 1.371183 ACCACACGGTCCAGACATG 59.629 57.895 0.00 0.00 44.71 3.21
3136 3478 1.371183 CCACACGGTCCAGACATGT 59.629 57.895 0.00 0.00 33.98 3.21
3137 3479 0.950555 CCACACGGTCCAGACATGTG 60.951 60.000 19.78 19.78 43.64 3.21
3138 3480 0.950555 CACACGGTCCAGACATGTGG 60.951 60.000 19.29 0.00 41.93 4.17
3139 3481 1.371183 CACGGTCCAGACATGTGGT 59.629 57.895 1.15 0.00 38.88 4.16
3140 3482 0.950555 CACGGTCCAGACATGTGGTG 60.951 60.000 1.15 0.00 38.88 4.17
3141 3483 1.371183 CGGTCCAGACATGTGGTGT 59.629 57.895 1.15 0.00 45.83 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.078637 GAGTGCCCGGTTTAGGACC 60.079 63.158 0.00 0.00 45.55 4.46
7 8 1.156736 CTTGTGAGTGCCCGGTTTAG 58.843 55.000 0.00 0.00 0.00 1.85
12 13 0.036010 ATCTTCTTGTGAGTGCCCGG 60.036 55.000 0.00 0.00 0.00 5.73
13 14 2.672961 TATCTTCTTGTGAGTGCCCG 57.327 50.000 0.00 0.00 0.00 6.13
33 34 5.047847 CGTCGTCCTAAAATACATCATGGT 58.952 41.667 0.00 0.00 0.00 3.55
36 37 5.272283 ACCGTCGTCCTAAAATACATCAT 57.728 39.130 0.00 0.00 0.00 2.45
69 70 2.910482 CGAAATCTGCAACACCGAAATG 59.090 45.455 0.00 0.00 0.00 2.32
70 71 2.095263 CCGAAATCTGCAACACCGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
74 75 1.154225 GCCGAAATCTGCAACACCG 60.154 57.895 0.00 0.00 0.00 4.94
84 85 4.030529 CACAACATCGAAATTGCCGAAATC 59.969 41.667 10.94 0.00 39.62 2.17
89 90 2.610219 TCACAACATCGAAATTGCCG 57.390 45.000 10.94 4.47 0.00 5.69
103 104 2.433604 TGGCTTGGAGCAAAATTCACAA 59.566 40.909 2.04 0.00 44.75 3.33
107 108 3.391506 AGTTGGCTTGGAGCAAAATTC 57.608 42.857 2.04 0.00 44.75 2.17
209 220 5.881443 TCAGTTCAAAACCTCCGTAAGAAAA 59.119 36.000 0.00 0.00 43.02 2.29
210 221 5.430007 TCAGTTCAAAACCTCCGTAAGAAA 58.570 37.500 0.00 0.00 43.02 2.52
248 295 0.942252 TATCTCTATGACGCGCGTGT 59.058 50.000 42.90 29.38 0.00 4.49
257 304 3.137728 TCCCGTGACCTGTATCTCTATGA 59.862 47.826 0.00 0.00 0.00 2.15
262 309 2.032620 ACATCCCGTGACCTGTATCTC 58.967 52.381 0.00 0.00 0.00 2.75
395 450 1.153289 CTCTGCCAGGGTTCATCGG 60.153 63.158 0.00 0.00 0.00 4.18
399 454 2.853542 TGCCTCTGCCAGGGTTCA 60.854 61.111 0.00 0.00 43.70 3.18
451 512 1.955157 GAGGCGAGCTAGCTGCATG 60.955 63.158 24.99 10.16 45.94 4.06
534 635 6.349973 TGAAGCGACTAACATGATGATTTC 57.650 37.500 0.00 0.00 0.00 2.17
576 681 1.010574 CGTCGTCTCTGCGATCTCC 60.011 63.158 0.00 0.00 43.07 3.71
637 742 0.394216 TGCTACCACATGGACATGGC 60.394 55.000 15.94 9.67 42.91 4.40
639 744 2.112380 TGTGCTACCACATGGACATG 57.888 50.000 10.57 10.57 46.51 3.21
823 968 2.411628 AGAAGAGAGCTAGCGTGAGA 57.588 50.000 9.55 0.00 0.00 3.27
824 969 4.829064 ATAAGAAGAGAGCTAGCGTGAG 57.171 45.455 9.55 0.00 0.00 3.51
825 970 5.007823 GTGTATAAGAAGAGAGCTAGCGTGA 59.992 44.000 9.55 0.00 0.00 4.35
826 971 5.209240 GTGTATAAGAAGAGAGCTAGCGTG 58.791 45.833 9.55 0.00 0.00 5.34
882 1027 2.132352 GGTCGGGAAGGCGGTATCT 61.132 63.158 0.00 0.00 0.00 1.98
883 1028 2.085042 GAGGTCGGGAAGGCGGTATC 62.085 65.000 0.00 0.00 0.00 2.24
889 1034 2.417936 GATCGAGGTCGGGAAGGC 59.582 66.667 0.00 0.00 40.29 4.35
910 1055 3.428063 TGAATTCAGGAGGAGGAGGAT 57.572 47.619 3.38 0.00 0.00 3.24
944 1091 5.371176 TGATCAGGAGGTGAGTAGAGTAGAT 59.629 44.000 0.00 0.00 39.07 1.98
947 1094 5.452341 TTGATCAGGAGGTGAGTAGAGTA 57.548 43.478 0.00 0.00 39.07 2.59
948 1095 4.323569 TTGATCAGGAGGTGAGTAGAGT 57.676 45.455 0.00 0.00 39.07 3.24
952 1099 6.268617 CCAAGATATTGATCAGGAGGTGAGTA 59.731 42.308 0.54 0.00 39.07 2.59
953 1100 5.071519 CCAAGATATTGATCAGGAGGTGAGT 59.928 44.000 0.54 0.00 39.07 3.41
960 1113 4.141413 CCACCACCAAGATATTGATCAGGA 60.141 45.833 0.54 0.00 34.95 3.86
964 1117 2.549754 CGCCACCACCAAGATATTGATC 59.450 50.000 0.54 0.00 0.00 2.92
970 1123 1.078497 CAGCGCCACCACCAAGATA 60.078 57.895 2.29 0.00 0.00 1.98
971 1124 2.360350 CAGCGCCACCACCAAGAT 60.360 61.111 2.29 0.00 0.00 2.40
974 1127 3.872603 AGTCAGCGCCACCACCAA 61.873 61.111 2.29 0.00 0.00 3.67
975 1128 4.624364 CAGTCAGCGCCACCACCA 62.624 66.667 2.29 0.00 0.00 4.17
985 1138 1.211969 CCATTGCAGTGCAGTCAGC 59.788 57.895 18.81 0.00 40.61 4.26
986 1139 1.211969 GCCATTGCAGTGCAGTCAG 59.788 57.895 18.81 10.10 40.61 3.51
987 1140 2.619165 CGCCATTGCAGTGCAGTCA 61.619 57.895 18.81 3.86 40.61 3.41
988 1141 2.177531 CGCCATTGCAGTGCAGTC 59.822 61.111 18.81 3.56 40.61 3.51
989 1142 2.281692 TCGCCATTGCAGTGCAGT 60.282 55.556 18.81 13.25 40.61 4.40
990 1143 2.177531 GTCGCCATTGCAGTGCAG 59.822 61.111 18.81 8.24 40.61 4.41
991 1144 2.281692 AGTCGCCATTGCAGTGCA 60.282 55.556 15.37 15.37 37.32 4.57
992 1145 2.177531 CAGTCGCCATTGCAGTGC 59.822 61.111 8.58 8.58 37.32 4.40
993 1146 2.872557 CCAGTCGCCATTGCAGTG 59.127 61.111 1.49 1.49 37.32 3.66
994 1147 3.058160 GCCAGTCGCCATTGCAGT 61.058 61.111 0.00 0.00 37.32 4.40
1025 1178 3.144120 CTGATGAGGAGGGCGACGG 62.144 68.421 0.00 0.00 0.00 4.79
1027 1180 2.107953 GCTGATGAGGAGGGCGAC 59.892 66.667 0.00 0.00 0.00 5.19
1030 1183 2.420890 CGAGCTGATGAGGAGGGC 59.579 66.667 0.00 0.00 0.00 5.19
1033 1186 1.108727 AGGAGCGAGCTGATGAGGAG 61.109 60.000 0.84 0.00 0.00 3.69
1039 1195 3.222855 CGGGAGGAGCGAGCTGAT 61.223 66.667 0.84 0.00 0.00 2.90
1683 1879 2.829384 GGTGAAGGTGGAGGTGGCA 61.829 63.158 0.00 0.00 0.00 4.92
1773 1969 0.657312 ACGTATGCATGCACGAATGG 59.343 50.000 30.25 16.54 40.56 3.16
1775 1971 1.521006 CGTACGTATGCATGCACGAAT 59.479 47.619 30.25 15.94 40.56 3.34
1776 1972 0.917939 CGTACGTATGCATGCACGAA 59.082 50.000 30.25 14.99 40.56 3.85
1779 1986 1.084290 CGCGTACGTATGCATGCAC 60.084 57.895 32.64 10.68 38.09 4.57
1785 1992 2.881827 TGTGCCGCGTACGTATGC 60.882 61.111 26.43 26.43 37.70 3.14
1787 1994 2.577644 CGTGTGCCGCGTACGTAT 60.578 61.111 17.90 0.00 37.70 3.06
1803 2010 1.059657 CGCCGTCTTGCATGAAAACG 61.060 55.000 3.51 11.82 0.00 3.60
1804 2011 0.040425 ACGCCGTCTTGCATGAAAAC 60.040 50.000 3.51 0.00 0.00 2.43
1805 2012 0.237235 GACGCCGTCTTGCATGAAAA 59.763 50.000 10.56 0.00 0.00 2.29
1806 2013 1.573829 GGACGCCGTCTTGCATGAAA 61.574 55.000 17.76 0.00 32.47 2.69
1807 2014 2.032634 GGACGCCGTCTTGCATGAA 61.033 57.895 17.76 0.00 32.47 2.57
1808 2015 2.434185 GGACGCCGTCTTGCATGA 60.434 61.111 17.76 0.00 32.47 3.07
1809 2016 2.741985 TGGACGCCGTCTTGCATG 60.742 61.111 17.76 0.00 32.47 4.06
1810 2017 2.434884 CTGGACGCCGTCTTGCAT 60.435 61.111 17.76 0.00 32.47 3.96
1813 2020 2.175184 CTTTGCTGGACGCCGTCTTG 62.175 60.000 17.76 10.99 38.05 3.02
1814 2021 1.961277 CTTTGCTGGACGCCGTCTT 60.961 57.895 17.76 0.00 38.05 3.01
1815 2022 2.357517 CTTTGCTGGACGCCGTCT 60.358 61.111 17.76 0.00 38.05 4.18
1816 2023 4.090057 GCTTTGCTGGACGCCGTC 62.090 66.667 9.15 9.15 38.05 4.79
1819 2026 2.985847 AAGGCTTTGCTGGACGCC 60.986 61.111 0.00 1.11 42.79 5.68
1820 2027 2.256461 CAAGGCTTTGCTGGACGC 59.744 61.111 0.00 0.00 39.77 5.19
1821 2028 1.165907 TGACAAGGCTTTGCTGGACG 61.166 55.000 8.71 0.00 37.85 4.79
1822 2029 0.312102 GTGACAAGGCTTTGCTGGAC 59.688 55.000 8.71 0.00 37.85 4.02
1823 2030 1.165907 CGTGACAAGGCTTTGCTGGA 61.166 55.000 8.71 0.00 37.85 3.86
1824 2031 1.283793 CGTGACAAGGCTTTGCTGG 59.716 57.895 8.71 0.00 37.85 4.85
1825 2032 0.040958 GACGTGACAAGGCTTTGCTG 60.041 55.000 8.71 0.00 37.85 4.41
1826 2033 1.166531 GGACGTGACAAGGCTTTGCT 61.167 55.000 8.71 0.00 37.85 3.91
1832 2039 0.028902 GTTGTTGGACGTGACAAGGC 59.971 55.000 0.00 0.00 36.52 4.35
1861 2068 2.989166 GCAAAGCCAAACATCAGTTAGC 59.011 45.455 0.00 0.00 36.84 3.09
1886 2093 2.040145 TGAGGCTGGATCACAATCACAA 59.960 45.455 0.00 0.00 33.21 3.33
1918 2129 2.807045 CTCGTGCTCGTGCTCACC 60.807 66.667 11.19 0.00 40.48 4.02
1930 2141 2.807045 GAGGTGCTCGTGCTCGTG 60.807 66.667 11.19 6.97 40.48 4.35
2162 2391 3.520862 GGTGCCGTGCCATGGATG 61.521 66.667 18.40 6.18 0.00 3.51
2200 2443 2.801996 CATGGCTGTTGCGTTGCG 60.802 61.111 0.00 0.00 40.82 4.85
2259 2514 9.063615 TCAGACTCGCTACAATAATCTATACAA 57.936 33.333 0.00 0.00 0.00 2.41
2289 2544 1.366366 CCTTGCTTGCTTGCTTGCT 59.634 52.632 10.35 0.00 0.00 3.91
2290 2545 2.315386 GCCTTGCTTGCTTGCTTGC 61.315 57.895 3.47 0.00 0.00 4.01
2291 2546 2.019951 CGCCTTGCTTGCTTGCTTG 61.020 57.895 3.47 0.00 0.00 4.01
2292 2547 2.337532 CGCCTTGCTTGCTTGCTT 59.662 55.556 3.47 0.00 0.00 3.91
2366 2626 9.658799 TCCTTCAATCTGATAAAAGAAGTACAG 57.341 33.333 11.47 0.00 32.68 2.74
2374 2636 7.498570 CCCTTCTCTCCTTCAATCTGATAAAAG 59.501 40.741 0.00 0.00 0.00 2.27
2388 2658 1.981495 CCTGTGTTCCCTTCTCTCCTT 59.019 52.381 0.00 0.00 0.00 3.36
2570 2900 1.536662 ACCTGACCTGACCTGACCC 60.537 63.158 0.00 0.00 0.00 4.46
2604 2939 3.499737 GCAGCTGCGCGTGGTAAT 61.500 61.111 25.23 0.00 0.00 1.89
2667 3002 3.686622 CGGAGGACACATATGGGTG 57.313 57.895 17.18 3.30 44.35 4.61
2703 3043 5.443185 TTCAACTTTGAGCCAAGATTCAG 57.557 39.130 0.00 0.00 38.61 3.02
2715 3055 3.130340 GGTGGAGCAACTTTCAACTTTGA 59.870 43.478 0.00 0.00 34.92 2.69
2824 3166 1.135859 CCACATTTCGAGCAGACAAGC 60.136 52.381 0.00 0.00 0.00 4.01
2831 3173 2.106477 TATGTGCCACATTTCGAGCA 57.894 45.000 16.67 0.00 39.88 4.26
2836 3178 3.068590 CCCTTGGATATGTGCCACATTTC 59.931 47.826 16.67 16.82 39.88 2.17
2854 3196 1.414061 CCCGATGCTCAGATCCCCTT 61.414 60.000 0.00 0.00 0.00 3.95
2855 3197 1.840650 CCCGATGCTCAGATCCCCT 60.841 63.158 0.00 0.00 0.00 4.79
2856 3198 2.746359 CCCGATGCTCAGATCCCC 59.254 66.667 0.00 0.00 0.00 4.81
2857 3199 1.825281 CTCCCCGATGCTCAGATCCC 61.825 65.000 0.00 0.00 0.00 3.85
2858 3200 1.670590 CTCCCCGATGCTCAGATCC 59.329 63.158 0.00 0.00 0.00 3.36
2859 3201 1.005156 GCTCCCCGATGCTCAGATC 60.005 63.158 0.00 0.00 0.00 2.75
2860 3202 1.459158 AGCTCCCCGATGCTCAGAT 60.459 57.895 0.00 0.00 33.90 2.90
2861 3203 2.042537 AGCTCCCCGATGCTCAGA 60.043 61.111 0.00 0.00 33.90 3.27
2862 3204 2.108566 CAGCTCCCCGATGCTCAG 59.891 66.667 0.00 0.00 37.44 3.35
2867 3209 1.377725 AAGTTGCAGCTCCCCGATG 60.378 57.895 2.60 0.00 0.00 3.84
2868 3210 1.377725 CAAGTTGCAGCTCCCCGAT 60.378 57.895 2.60 0.00 0.00 4.18
2869 3211 2.032528 CAAGTTGCAGCTCCCCGA 59.967 61.111 2.60 0.00 0.00 5.14
2870 3212 3.058160 CCAAGTTGCAGCTCCCCG 61.058 66.667 2.60 0.00 0.00 5.73
2871 3213 3.376918 GCCAAGTTGCAGCTCCCC 61.377 66.667 2.60 0.00 0.00 4.81
2872 3214 3.376918 GGCCAAGTTGCAGCTCCC 61.377 66.667 2.60 1.27 0.00 4.30
2873 3215 2.282745 AGGCCAAGTTGCAGCTCC 60.283 61.111 5.01 0.58 0.00 4.70
2874 3216 2.684843 CGAGGCCAAGTTGCAGCTC 61.685 63.158 5.01 0.00 0.00 4.09
2875 3217 2.670934 CGAGGCCAAGTTGCAGCT 60.671 61.111 5.01 0.00 0.00 4.24
2876 3218 4.410743 GCGAGGCCAAGTTGCAGC 62.411 66.667 5.01 0.00 0.00 5.25
2877 3219 1.375908 TAGCGAGGCCAAGTTGCAG 60.376 57.895 5.01 0.00 0.00 4.41
2878 3220 1.671054 GTAGCGAGGCCAAGTTGCA 60.671 57.895 5.01 0.00 0.00 4.08
2879 3221 2.399356 GGTAGCGAGGCCAAGTTGC 61.399 63.158 5.01 0.00 0.00 4.17
2880 3222 0.741221 GAGGTAGCGAGGCCAAGTTG 60.741 60.000 5.01 0.00 0.00 3.16
2881 3223 1.597461 GAGGTAGCGAGGCCAAGTT 59.403 57.895 5.01 0.00 0.00 2.66
2882 3224 2.359967 GGAGGTAGCGAGGCCAAGT 61.360 63.158 5.01 0.00 0.00 3.16
2883 3225 2.501610 GGAGGTAGCGAGGCCAAG 59.498 66.667 5.01 0.00 0.00 3.61
2884 3226 3.458163 CGGAGGTAGCGAGGCCAA 61.458 66.667 5.01 0.00 0.00 4.52
2897 3239 3.854669 CTAGGCCAGGCACCGGAG 61.855 72.222 15.19 0.00 0.00 4.63
2901 3243 4.840005 GTCGCTAGGCCAGGCACC 62.840 72.222 15.19 0.00 0.00 5.01
2902 3244 4.082523 TGTCGCTAGGCCAGGCAC 62.083 66.667 15.19 14.57 0.00 5.01
2903 3245 4.082523 GTGTCGCTAGGCCAGGCA 62.083 66.667 15.19 5.85 0.00 4.75
2904 3246 3.391665 ATGTGTCGCTAGGCCAGGC 62.392 63.158 5.01 1.26 0.00 4.85
2905 3247 1.522355 CATGTGTCGCTAGGCCAGG 60.522 63.158 5.01 0.00 0.00 4.45
2906 3248 0.105593 ATCATGTGTCGCTAGGCCAG 59.894 55.000 5.01 0.97 0.00 4.85
2907 3249 0.541392 AATCATGTGTCGCTAGGCCA 59.459 50.000 5.01 0.00 0.00 5.36
2908 3250 1.668419 AAATCATGTGTCGCTAGGCC 58.332 50.000 0.00 0.00 0.00 5.19
2909 3251 2.792542 GCAAAATCATGTGTCGCTAGGC 60.793 50.000 0.00 0.00 0.00 3.93
2910 3252 2.419673 TGCAAAATCATGTGTCGCTAGG 59.580 45.455 0.00 0.00 0.00 3.02
2911 3253 3.745332 TGCAAAATCATGTGTCGCTAG 57.255 42.857 0.00 0.00 0.00 3.42
2912 3254 3.242381 CGATGCAAAATCATGTGTCGCTA 60.242 43.478 0.00 0.00 0.00 4.26
2913 3255 2.476686 CGATGCAAAATCATGTGTCGCT 60.477 45.455 0.00 0.00 0.00 4.93
2914 3256 1.841944 CGATGCAAAATCATGTGTCGC 59.158 47.619 0.00 0.00 0.00 5.19
2915 3257 2.159531 ACCGATGCAAAATCATGTGTCG 60.160 45.455 0.00 0.00 32.76 4.35
2916 3258 3.173599 CACCGATGCAAAATCATGTGTC 58.826 45.455 0.00 0.00 0.00 3.67
2917 3259 2.557924 ACACCGATGCAAAATCATGTGT 59.442 40.909 0.00 0.00 32.29 3.72
2918 3260 3.220507 ACACCGATGCAAAATCATGTG 57.779 42.857 0.00 0.00 0.00 3.21
2919 3261 3.367292 GGAACACCGATGCAAAATCATGT 60.367 43.478 0.00 0.00 0.00 3.21
2920 3262 3.181397 GGAACACCGATGCAAAATCATG 58.819 45.455 0.00 0.00 0.00 3.07
2921 3263 2.824936 TGGAACACCGATGCAAAATCAT 59.175 40.909 0.00 0.00 0.00 2.45
2922 3264 2.228582 CTGGAACACCGATGCAAAATCA 59.771 45.455 0.00 0.00 0.00 2.57
2923 3265 2.487762 TCTGGAACACCGATGCAAAATC 59.512 45.455 0.00 0.00 0.00 2.17
2924 3266 2.489329 CTCTGGAACACCGATGCAAAAT 59.511 45.455 0.00 0.00 0.00 1.82
2925 3267 1.879380 CTCTGGAACACCGATGCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
2926 3268 1.522668 CTCTGGAACACCGATGCAAA 58.477 50.000 0.00 0.00 0.00 3.68
2927 3269 0.955428 GCTCTGGAACACCGATGCAA 60.955 55.000 0.00 0.00 0.00 4.08
2928 3270 1.375908 GCTCTGGAACACCGATGCA 60.376 57.895 0.00 0.00 0.00 3.96
2929 3271 0.955428 TTGCTCTGGAACACCGATGC 60.955 55.000 0.00 0.00 0.00 3.91
2930 3272 0.798776 GTTGCTCTGGAACACCGATG 59.201 55.000 0.00 0.00 0.00 3.84
2931 3273 0.670546 CGTTGCTCTGGAACACCGAT 60.671 55.000 3.18 0.00 0.00 4.18
2932 3274 1.300620 CGTTGCTCTGGAACACCGA 60.301 57.895 3.18 0.00 0.00 4.69
2933 3275 1.157870 AACGTTGCTCTGGAACACCG 61.158 55.000 0.00 0.00 0.00 4.94
2934 3276 1.873698 TAACGTTGCTCTGGAACACC 58.126 50.000 11.99 0.00 0.00 4.16
2935 3277 4.091509 CACTATAACGTTGCTCTGGAACAC 59.908 45.833 11.99 0.00 0.00 3.32
2936 3278 4.242475 CACTATAACGTTGCTCTGGAACA 58.758 43.478 11.99 0.00 0.00 3.18
2937 3279 4.091509 CACACTATAACGTTGCTCTGGAAC 59.908 45.833 11.99 0.00 0.00 3.62
2938 3280 4.242475 CACACTATAACGTTGCTCTGGAA 58.758 43.478 11.99 0.00 0.00 3.53
2939 3281 3.845178 CACACTATAACGTTGCTCTGGA 58.155 45.455 11.99 0.00 0.00 3.86
2940 3282 2.348666 GCACACTATAACGTTGCTCTGG 59.651 50.000 11.99 0.00 0.00 3.86
2941 3283 2.993220 TGCACACTATAACGTTGCTCTG 59.007 45.455 11.99 3.80 0.00 3.35
2942 3284 3.313012 TGCACACTATAACGTTGCTCT 57.687 42.857 11.99 0.00 0.00 4.09
2943 3285 4.565166 TGTATGCACACTATAACGTTGCTC 59.435 41.667 11.99 1.09 0.00 4.26
2944 3286 4.500127 TGTATGCACACTATAACGTTGCT 58.500 39.130 11.99 0.32 0.00 3.91
2945 3287 4.850859 TGTATGCACACTATAACGTTGC 57.149 40.909 11.99 4.98 0.00 4.17
2946 3288 6.582437 TCATGTATGCACACTATAACGTTG 57.418 37.500 11.99 0.00 37.54 4.10
2947 3289 7.603963 TTTCATGTATGCACACTATAACGTT 57.396 32.000 5.88 5.88 37.54 3.99
2948 3290 7.603963 TTTTCATGTATGCACACTATAACGT 57.396 32.000 0.00 0.00 37.54 3.99
2949 3291 8.334632 TGATTTTCATGTATGCACACTATAACG 58.665 33.333 0.00 0.00 37.54 3.18
2952 3294 8.344831 GCTTGATTTTCATGTATGCACACTATA 58.655 33.333 0.00 0.00 37.54 1.31
2953 3295 7.148035 TGCTTGATTTTCATGTATGCACACTAT 60.148 33.333 0.00 0.00 37.54 2.12
2954 3296 6.150809 TGCTTGATTTTCATGTATGCACACTA 59.849 34.615 0.00 0.00 37.54 2.74
2955 3297 5.047872 TGCTTGATTTTCATGTATGCACACT 60.048 36.000 0.00 0.00 37.54 3.55
2956 3298 5.162794 TGCTTGATTTTCATGTATGCACAC 58.837 37.500 0.00 0.00 37.54 3.82
2957 3299 5.183522 TCTGCTTGATTTTCATGTATGCACA 59.816 36.000 0.00 0.00 39.52 4.57
2958 3300 5.643664 TCTGCTTGATTTTCATGTATGCAC 58.356 37.500 0.00 0.00 0.00 4.57
2959 3301 5.900865 TCTGCTTGATTTTCATGTATGCA 57.099 34.783 0.00 0.00 0.00 3.96
2960 3302 6.500910 TCATCTGCTTGATTTTCATGTATGC 58.499 36.000 0.00 0.00 32.05 3.14
2964 3306 9.132923 AGATTATCATCTGCTTGATTTTCATGT 57.867 29.630 0.00 0.00 38.44 3.21
2968 3310 9.557338 GCATAGATTATCATCTGCTTGATTTTC 57.443 33.333 0.00 2.48 40.28 2.29
2969 3311 9.074576 TGCATAGATTATCATCTGCTTGATTTT 57.925 29.630 12.40 0.00 40.28 1.82
2970 3312 8.631480 TGCATAGATTATCATCTGCTTGATTT 57.369 30.769 12.40 0.00 40.28 2.17
2971 3313 8.631480 TTGCATAGATTATCATCTGCTTGATT 57.369 30.769 12.40 0.00 40.28 2.57
2972 3314 8.809468 ATTGCATAGATTATCATCTGCTTGAT 57.191 30.769 12.40 3.49 40.28 2.57
2973 3315 7.881232 TGATTGCATAGATTATCATCTGCTTGA 59.119 33.333 12.40 0.00 40.28 3.02
2974 3316 8.040716 TGATTGCATAGATTATCATCTGCTTG 57.959 34.615 12.40 0.00 40.28 4.01
2975 3317 8.631480 TTGATTGCATAGATTATCATCTGCTT 57.369 30.769 12.40 3.73 40.28 3.91
2976 3318 8.678199 CATTGATTGCATAGATTATCATCTGCT 58.322 33.333 12.40 0.00 40.28 4.24
2977 3319 7.915923 CCATTGATTGCATAGATTATCATCTGC 59.084 37.037 0.00 1.25 40.28 4.26
2978 3320 7.915923 GCCATTGATTGCATAGATTATCATCTG 59.084 37.037 0.00 0.42 40.28 2.90
2979 3321 7.834681 AGCCATTGATTGCATAGATTATCATCT 59.165 33.333 0.00 0.00 42.83 2.90
2980 3322 7.997482 AGCCATTGATTGCATAGATTATCATC 58.003 34.615 0.00 0.00 0.00 2.92
2981 3323 7.956328 AGCCATTGATTGCATAGATTATCAT 57.044 32.000 0.00 0.00 0.00 2.45
2982 3324 7.770366 AAGCCATTGATTGCATAGATTATCA 57.230 32.000 0.00 0.00 0.00 2.15
2985 3327 9.081204 ACAATAAGCCATTGATTGCATAGATTA 57.919 29.630 13.93 0.00 45.99 1.75
2986 3328 7.959175 ACAATAAGCCATTGATTGCATAGATT 58.041 30.769 13.93 0.00 45.99 2.40
2987 3329 7.534723 ACAATAAGCCATTGATTGCATAGAT 57.465 32.000 13.93 0.00 45.99 1.98
2988 3330 6.964807 ACAATAAGCCATTGATTGCATAGA 57.035 33.333 13.93 0.00 45.99 1.98
2989 3331 7.204604 TCAACAATAAGCCATTGATTGCATAG 58.795 34.615 13.93 0.00 45.99 2.23
2990 3332 7.110043 TCAACAATAAGCCATTGATTGCATA 57.890 32.000 13.93 0.00 45.99 3.14
2991 3333 5.979993 TCAACAATAAGCCATTGATTGCAT 58.020 33.333 13.93 0.00 45.99 3.96
2992 3334 5.402997 TCAACAATAAGCCATTGATTGCA 57.597 34.783 13.93 0.00 45.99 4.08
2993 3335 5.063817 GGTTCAACAATAAGCCATTGATTGC 59.936 40.000 13.93 5.17 45.99 3.56
2994 3336 6.164876 TGGTTCAACAATAAGCCATTGATTG 58.835 36.000 13.93 13.12 45.99 2.67
2995 3337 6.357579 TGGTTCAACAATAAGCCATTGATT 57.642 33.333 13.93 4.07 45.99 2.57
2996 3338 5.999205 TGGTTCAACAATAAGCCATTGAT 57.001 34.783 13.93 1.41 45.99 2.57
2997 3339 5.999205 ATGGTTCAACAATAAGCCATTGA 57.001 34.783 13.93 0.00 45.99 2.57
2999 3341 6.663093 TGAGTATGGTTCAACAATAAGCCATT 59.337 34.615 0.00 0.00 37.77 3.16
3000 3342 6.186957 TGAGTATGGTTCAACAATAAGCCAT 58.813 36.000 0.00 0.00 39.66 4.40
3001 3343 5.565509 TGAGTATGGTTCAACAATAAGCCA 58.434 37.500 0.00 0.00 0.00 4.75
3002 3344 5.648092 ACTGAGTATGGTTCAACAATAAGCC 59.352 40.000 0.00 0.00 0.00 4.35
3003 3345 6.743575 ACTGAGTATGGTTCAACAATAAGC 57.256 37.500 0.00 0.00 0.00 3.09
3006 3348 9.826574 GGTATAACTGAGTATGGTTCAACAATA 57.173 33.333 0.00 0.00 0.00 1.90
3007 3349 8.325787 TGGTATAACTGAGTATGGTTCAACAAT 58.674 33.333 0.00 0.00 0.00 2.71
3008 3350 7.681679 TGGTATAACTGAGTATGGTTCAACAA 58.318 34.615 0.00 0.00 0.00 2.83
3009 3351 7.247456 TGGTATAACTGAGTATGGTTCAACA 57.753 36.000 0.00 0.00 0.00 3.33
3010 3352 7.985184 TGATGGTATAACTGAGTATGGTTCAAC 59.015 37.037 0.00 0.00 0.00 3.18
3011 3353 8.084985 TGATGGTATAACTGAGTATGGTTCAA 57.915 34.615 0.00 0.00 0.00 2.69
3012 3354 7.669089 TGATGGTATAACTGAGTATGGTTCA 57.331 36.000 0.00 0.00 0.00 3.18
3030 3372 7.550196 GCATTCAAGGAAACAAATAATGATGGT 59.450 33.333 0.00 0.00 0.00 3.55
3031 3373 7.767198 AGCATTCAAGGAAACAAATAATGATGG 59.233 33.333 0.00 0.00 0.00 3.51
3032 3374 8.712285 AGCATTCAAGGAAACAAATAATGATG 57.288 30.769 0.00 0.00 0.00 3.07
3033 3375 9.158233 CAAGCATTCAAGGAAACAAATAATGAT 57.842 29.630 0.00 0.00 0.00 2.45
3034 3376 7.118101 GCAAGCATTCAAGGAAACAAATAATGA 59.882 33.333 0.00 0.00 0.00 2.57
3035 3377 7.118680 AGCAAGCATTCAAGGAAACAAATAATG 59.881 33.333 0.00 0.00 0.00 1.90
3036 3378 7.163441 AGCAAGCATTCAAGGAAACAAATAAT 58.837 30.769 0.00 0.00 0.00 1.28
3037 3379 6.523840 AGCAAGCATTCAAGGAAACAAATAA 58.476 32.000 0.00 0.00 0.00 1.40
3038 3380 6.100404 AGCAAGCATTCAAGGAAACAAATA 57.900 33.333 0.00 0.00 0.00 1.40
3039 3381 4.964593 AGCAAGCATTCAAGGAAACAAAT 58.035 34.783 0.00 0.00 0.00 2.32
3040 3382 4.405116 AGCAAGCATTCAAGGAAACAAA 57.595 36.364 0.00 0.00 0.00 2.83
3041 3383 4.405116 AAGCAAGCATTCAAGGAAACAA 57.595 36.364 0.00 0.00 0.00 2.83
3042 3384 4.405116 AAAGCAAGCATTCAAGGAAACA 57.595 36.364 0.00 0.00 0.00 2.83
3043 3385 6.457851 CTTAAAGCAAGCATTCAAGGAAAC 57.542 37.500 0.00 0.00 0.00 2.78
3059 3401 4.033014 GGAGATACGTCAACTGCTTAAAGC 59.967 45.833 0.00 0.00 42.82 3.51
3060 3402 5.168569 TGGAGATACGTCAACTGCTTAAAG 58.831 41.667 0.00 0.00 0.00 1.85
3061 3403 5.142061 TGGAGATACGTCAACTGCTTAAA 57.858 39.130 0.00 0.00 0.00 1.52
3062 3404 4.794278 TGGAGATACGTCAACTGCTTAA 57.206 40.909 0.00 0.00 0.00 1.85
3063 3405 4.491676 GTTGGAGATACGTCAACTGCTTA 58.508 43.478 9.19 0.00 38.10 3.09
3064 3406 3.326747 GTTGGAGATACGTCAACTGCTT 58.673 45.455 9.19 0.00 38.10 3.91
3065 3407 2.671351 CGTTGGAGATACGTCAACTGCT 60.671 50.000 13.23 0.00 38.74 4.24
3066 3408 1.654105 CGTTGGAGATACGTCAACTGC 59.346 52.381 13.23 7.91 38.74 4.40
3074 3416 1.203994 AGGGTCAACGTTGGAGATACG 59.796 52.381 27.02 0.00 44.20 3.06
3075 3417 2.232941 TGAGGGTCAACGTTGGAGATAC 59.767 50.000 27.02 17.04 0.00 2.24
3076 3418 2.531771 TGAGGGTCAACGTTGGAGATA 58.468 47.619 27.02 5.45 0.00 1.98
3077 3419 1.348064 TGAGGGTCAACGTTGGAGAT 58.652 50.000 27.02 11.96 0.00 2.75
3078 3420 1.124780 TTGAGGGTCAACGTTGGAGA 58.875 50.000 27.02 6.24 30.26 3.71
3079 3421 1.602377 GTTTGAGGGTCAACGTTGGAG 59.398 52.381 27.02 2.88 35.89 3.86
3080 3422 1.065345 TGTTTGAGGGTCAACGTTGGA 60.065 47.619 27.02 11.87 35.89 3.53
3081 3423 1.333619 CTGTTTGAGGGTCAACGTTGG 59.666 52.381 27.02 9.69 35.89 3.77
3082 3424 1.268539 GCTGTTTGAGGGTCAACGTTG 60.269 52.381 22.35 22.35 35.89 4.10
3083 3425 1.021968 GCTGTTTGAGGGTCAACGTT 58.978 50.000 0.00 0.00 35.89 3.99
3084 3426 0.818040 GGCTGTTTGAGGGTCAACGT 60.818 55.000 0.00 0.00 35.89 3.99
3085 3427 1.515521 GGGCTGTTTGAGGGTCAACG 61.516 60.000 0.00 0.00 35.89 4.10
3086 3428 1.515521 CGGGCTGTTTGAGGGTCAAC 61.516 60.000 0.00 0.00 35.89 3.18
3087 3429 1.228124 CGGGCTGTTTGAGGGTCAA 60.228 57.895 0.00 0.00 34.03 3.18
3088 3430 2.429930 CGGGCTGTTTGAGGGTCA 59.570 61.111 0.00 0.00 0.00 4.02
3089 3431 3.056328 GCGGGCTGTTTGAGGGTC 61.056 66.667 0.00 0.00 0.00 4.46
3090 3432 3.429372 TTGCGGGCTGTTTGAGGGT 62.429 57.895 0.00 0.00 0.00 4.34
3091 3433 2.597217 TTGCGGGCTGTTTGAGGG 60.597 61.111 0.00 0.00 0.00 4.30
3092 3434 2.644992 GTTGCGGGCTGTTTGAGG 59.355 61.111 0.00 0.00 0.00 3.86
3093 3435 1.526575 ATGGTTGCGGGCTGTTTGAG 61.527 55.000 0.00 0.00 0.00 3.02
3094 3436 1.112315 AATGGTTGCGGGCTGTTTGA 61.112 50.000 0.00 0.00 0.00 2.69
3095 3437 0.249826 AAATGGTTGCGGGCTGTTTG 60.250 50.000 0.00 0.00 0.00 2.93
3096 3438 0.249826 CAAATGGTTGCGGGCTGTTT 60.250 50.000 0.00 0.00 0.00 2.83
3097 3439 1.112315 TCAAATGGTTGCGGGCTGTT 61.112 50.000 0.00 0.00 34.50 3.16
3098 3440 1.112315 TTCAAATGGTTGCGGGCTGT 61.112 50.000 0.00 0.00 34.50 4.40
3099 3441 0.667184 GTTCAAATGGTTGCGGGCTG 60.667 55.000 0.00 0.00 34.50 4.85
3100 3442 1.665442 GTTCAAATGGTTGCGGGCT 59.335 52.632 0.00 0.00 34.50 5.19
3101 3443 1.374125 GGTTCAAATGGTTGCGGGC 60.374 57.895 0.00 0.00 34.50 6.13
3102 3444 0.319469 GTGGTTCAAATGGTTGCGGG 60.319 55.000 0.00 0.00 34.50 6.13
3103 3445 0.387202 TGTGGTTCAAATGGTTGCGG 59.613 50.000 0.00 0.00 34.50 5.69
3104 3446 1.486439 GTGTGGTTCAAATGGTTGCG 58.514 50.000 0.00 0.00 34.50 4.85
3105 3447 1.486439 CGTGTGGTTCAAATGGTTGC 58.514 50.000 0.00 0.00 34.50 4.17
3106 3448 2.132740 CCGTGTGGTTCAAATGGTTG 57.867 50.000 0.00 0.00 35.95 3.77
3118 3460 0.950555 CACATGTCTGGACCGTGTGG 60.951 60.000 19.37 8.54 40.31 4.17
3119 3461 0.950555 CCACATGTCTGGACCGTGTG 60.951 60.000 19.82 19.82 41.98 3.82
3120 3462 1.371183 CCACATGTCTGGACCGTGT 59.629 57.895 0.00 9.80 34.08 4.49
3121 3463 0.950555 CACCACATGTCTGGACCGTG 60.951 60.000 9.25 11.16 35.04 4.94
3122 3464 1.371183 CACCACATGTCTGGACCGT 59.629 57.895 9.25 0.00 35.04 4.83
3123 3465 1.371183 ACACCACATGTCTGGACCG 59.629 57.895 9.25 0.71 36.54 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.