Multiple sequence alignment - TraesCS5B01G328100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G328100 chr5B 100.000 3419 0 0 1 3419 511605166 511608584 0.000000e+00 6314
1 TraesCS5B01G328100 chr5B 71.307 1530 387 39 1007 2517 533500116 533501612 2.530000e-91 346
2 TraesCS5B01G328100 chr5D 93.649 2897 144 14 541 3419 423833577 423836451 0.000000e+00 4294
3 TraesCS5B01G328100 chr5D 71.864 1379 352 25 1007 2376 438595026 438596377 6.970000e-97 364
4 TraesCS5B01G328100 chr5D 71.185 1527 394 34 1007 2517 438691500 438692996 1.180000e-89 340
5 TraesCS5B01G328100 chr5D 89.286 112 9 3 372 482 423833449 423833558 1.650000e-28 137
6 TraesCS5B01G328100 chr7D 79.691 2654 506 27 782 3419 53505327 53502691 0.000000e+00 1884
7 TraesCS5B01G328100 chr7A 79.118 2222 423 33 735 2936 55890960 55888760 0.000000e+00 1495
8 TraesCS5B01G328100 chr4A 79.770 1997 376 19 1442 3419 668154894 668152907 0.000000e+00 1424
9 TraesCS5B01G328100 chr5A 94.105 475 28 0 2945 3419 537255068 537255542 0.000000e+00 723


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G328100 chr5B 511605166 511608584 3418 False 6314.0 6314 100.0000 1 3419 1 chr5B.!!$F1 3418
1 TraesCS5B01G328100 chr5B 533500116 533501612 1496 False 346.0 346 71.3070 1007 2517 1 chr5B.!!$F2 1510
2 TraesCS5B01G328100 chr5D 423833449 423836451 3002 False 2215.5 4294 91.4675 372 3419 2 chr5D.!!$F3 3047
3 TraesCS5B01G328100 chr5D 438595026 438596377 1351 False 364.0 364 71.8640 1007 2376 1 chr5D.!!$F1 1369
4 TraesCS5B01G328100 chr5D 438691500 438692996 1496 False 340.0 340 71.1850 1007 2517 1 chr5D.!!$F2 1510
5 TraesCS5B01G328100 chr7D 53502691 53505327 2636 True 1884.0 1884 79.6910 782 3419 1 chr7D.!!$R1 2637
6 TraesCS5B01G328100 chr7A 55888760 55890960 2200 True 1495.0 1495 79.1180 735 2936 1 chr7A.!!$R1 2201
7 TraesCS5B01G328100 chr4A 668152907 668154894 1987 True 1424.0 1424 79.7700 1442 3419 1 chr4A.!!$R1 1977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.033796 CCTGATGAATGGTGGTGGCT 60.034 55.0 0.00 0.00 0.0 4.75 F
633 641 0.034896 ACTGGTTGACTGGCTTACCG 59.965 55.0 1.82 0.39 39.7 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2090 0.318762 ACTGAGGTCCAACTTCGCTC 59.681 55.0 0.0 0.0 0.0 5.03 R
2602 2630 1.123861 TCAACTCTGGGCAGCTCTGT 61.124 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.626028 AACTTGGTTCTCGAAACATGC 57.374 42.857 9.65 0.00 37.91 4.06
23 24 1.531149 ACTTGGTTCTCGAAACATGCG 59.469 47.619 9.65 0.00 37.91 4.73
24 25 1.798223 CTTGGTTCTCGAAACATGCGA 59.202 47.619 0.00 0.00 37.91 5.10
47 48 8.786937 CGAGTATTGCATTTGCTTATTTGTAT 57.213 30.769 3.94 0.00 42.66 2.29
48 49 8.684655 CGAGTATTGCATTTGCTTATTTGTATG 58.315 33.333 3.94 0.00 42.66 2.39
49 50 9.734620 GAGTATTGCATTTGCTTATTTGTATGA 57.265 29.630 3.94 0.00 42.66 2.15
53 54 8.999220 TTGCATTTGCTTATTTGTATGATGAA 57.001 26.923 3.94 0.00 42.66 2.57
54 55 9.602568 TTGCATTTGCTTATTTGTATGATGAAT 57.397 25.926 3.94 0.00 42.66 2.57
59 60 9.955208 TTTGCTTATTTGTATGATGAATAGCTG 57.045 29.630 0.00 0.00 0.00 4.24
60 61 7.587629 TGCTTATTTGTATGATGAATAGCTGC 58.412 34.615 0.00 0.00 0.00 5.25
61 62 7.229106 TGCTTATTTGTATGATGAATAGCTGCA 59.771 33.333 1.02 0.00 0.00 4.41
62 63 8.242053 GCTTATTTGTATGATGAATAGCTGCAT 58.758 33.333 1.02 0.00 0.00 3.96
63 64 9.556030 CTTATTTGTATGATGAATAGCTGCATG 57.444 33.333 1.02 0.00 0.00 4.06
64 65 6.947644 TTTGTATGATGAATAGCTGCATGT 57.052 33.333 1.02 0.00 0.00 3.21
65 66 8.625786 ATTTGTATGATGAATAGCTGCATGTA 57.374 30.769 1.02 0.00 0.00 2.29
66 67 7.425577 TTGTATGATGAATAGCTGCATGTAC 57.574 36.000 1.02 4.37 0.00 2.90
67 68 6.523840 TGTATGATGAATAGCTGCATGTACA 58.476 36.000 1.02 0.00 0.00 2.90
68 69 7.163441 TGTATGATGAATAGCTGCATGTACAT 58.837 34.615 1.41 1.41 0.00 2.29
69 70 7.662669 TGTATGATGAATAGCTGCATGTACATT 59.337 33.333 5.37 0.00 0.00 2.71
70 71 6.549912 TGATGAATAGCTGCATGTACATTC 57.450 37.500 5.37 1.31 0.00 2.67
71 72 5.178067 TGATGAATAGCTGCATGTACATTCG 59.822 40.000 5.37 0.00 0.00 3.34
72 73 3.248363 TGAATAGCTGCATGTACATTCGC 59.752 43.478 5.37 8.43 0.00 4.70
73 74 2.307934 TAGCTGCATGTACATTCGCA 57.692 45.000 17.19 17.19 0.00 5.10
74 75 0.729116 AGCTGCATGTACATTCGCAC 59.271 50.000 14.93 12.21 0.00 5.34
75 76 0.447406 GCTGCATGTACATTCGCACA 59.553 50.000 14.93 4.90 0.00 4.57
76 77 1.135717 GCTGCATGTACATTCGCACAA 60.136 47.619 14.93 0.00 0.00 3.33
77 78 2.668001 GCTGCATGTACATTCGCACAAA 60.668 45.455 14.93 0.00 0.00 2.83
78 79 3.165890 CTGCATGTACATTCGCACAAAG 58.834 45.455 14.93 4.36 0.00 2.77
79 80 2.095314 TGCATGTACATTCGCACAAAGG 60.095 45.455 14.93 0.00 0.00 3.11
80 81 2.161410 GCATGTACATTCGCACAAAGGA 59.839 45.455 5.37 0.00 0.00 3.36
81 82 3.365868 GCATGTACATTCGCACAAAGGAA 60.366 43.478 5.37 0.00 0.00 3.36
82 83 4.675146 GCATGTACATTCGCACAAAGGAAT 60.675 41.667 5.37 0.00 33.31 3.01
83 84 5.448496 GCATGTACATTCGCACAAAGGAATA 60.448 40.000 5.37 0.00 31.93 1.75
84 85 5.794687 TGTACATTCGCACAAAGGAATAG 57.205 39.130 0.00 0.00 31.93 1.73
85 86 5.483811 TGTACATTCGCACAAAGGAATAGA 58.516 37.500 0.00 0.00 31.93 1.98
86 87 4.946784 ACATTCGCACAAAGGAATAGAC 57.053 40.909 0.00 0.00 31.93 2.59
87 88 4.323417 ACATTCGCACAAAGGAATAGACA 58.677 39.130 0.00 0.00 31.93 3.41
88 89 4.154195 ACATTCGCACAAAGGAATAGACAC 59.846 41.667 0.00 0.00 31.93 3.67
89 90 3.394674 TCGCACAAAGGAATAGACACA 57.605 42.857 0.00 0.00 0.00 3.72
90 91 3.325870 TCGCACAAAGGAATAGACACAG 58.674 45.455 0.00 0.00 0.00 3.66
91 92 2.416547 CGCACAAAGGAATAGACACAGG 59.583 50.000 0.00 0.00 0.00 4.00
92 93 2.162408 GCACAAAGGAATAGACACAGGC 59.838 50.000 0.00 0.00 0.00 4.85
93 94 2.416547 CACAAAGGAATAGACACAGGCG 59.583 50.000 0.00 0.00 0.00 5.52
94 95 2.038557 ACAAAGGAATAGACACAGGCGT 59.961 45.455 0.00 0.00 0.00 5.68
95 96 2.673368 CAAAGGAATAGACACAGGCGTC 59.327 50.000 0.00 0.00 36.08 5.19
96 97 0.456221 AGGAATAGACACAGGCGTCG 59.544 55.000 0.00 0.00 40.98 5.12
97 98 0.527817 GGAATAGACACAGGCGTCGG 60.528 60.000 0.00 0.00 40.98 4.79
98 99 0.172803 GAATAGACACAGGCGTCGGT 59.827 55.000 0.00 0.00 40.98 4.69
99 100 0.606604 AATAGACACAGGCGTCGGTT 59.393 50.000 0.00 0.00 40.98 4.44
100 101 0.606604 ATAGACACAGGCGTCGGTTT 59.393 50.000 0.00 0.00 40.98 3.27
101 102 0.319211 TAGACACAGGCGTCGGTTTG 60.319 55.000 0.00 0.00 40.98 2.93
102 103 1.885850 GACACAGGCGTCGGTTTGT 60.886 57.895 0.00 0.00 0.00 2.83
103 104 1.433837 GACACAGGCGTCGGTTTGTT 61.434 55.000 0.00 0.00 0.00 2.83
104 105 1.010125 CACAGGCGTCGGTTTGTTG 60.010 57.895 0.00 0.00 0.00 3.33
105 106 1.450669 ACAGGCGTCGGTTTGTTGT 60.451 52.632 0.00 0.00 0.00 3.32
106 107 1.010125 CAGGCGTCGGTTTGTTGTG 60.010 57.895 0.00 0.00 0.00 3.33
107 108 1.153329 AGGCGTCGGTTTGTTGTGA 60.153 52.632 0.00 0.00 0.00 3.58
108 109 0.534203 AGGCGTCGGTTTGTTGTGAT 60.534 50.000 0.00 0.00 0.00 3.06
109 110 0.309612 GGCGTCGGTTTGTTGTGATT 59.690 50.000 0.00 0.00 0.00 2.57
110 111 1.268845 GGCGTCGGTTTGTTGTGATTT 60.269 47.619 0.00 0.00 0.00 2.17
111 112 1.778591 GCGTCGGTTTGTTGTGATTTG 59.221 47.619 0.00 0.00 0.00 2.32
112 113 2.793237 GCGTCGGTTTGTTGTGATTTGT 60.793 45.455 0.00 0.00 0.00 2.83
113 114 2.781101 CGTCGGTTTGTTGTGATTTGTG 59.219 45.455 0.00 0.00 0.00 3.33
114 115 3.486043 CGTCGGTTTGTTGTGATTTGTGA 60.486 43.478 0.00 0.00 0.00 3.58
115 116 3.789224 GTCGGTTTGTTGTGATTTGTGAC 59.211 43.478 0.00 0.00 0.00 3.67
116 117 3.692101 TCGGTTTGTTGTGATTTGTGACT 59.308 39.130 0.00 0.00 0.00 3.41
117 118 3.790820 CGGTTTGTTGTGATTTGTGACTG 59.209 43.478 0.00 0.00 0.00 3.51
118 119 3.551485 GGTTTGTTGTGATTTGTGACTGC 59.449 43.478 0.00 0.00 0.00 4.40
119 120 4.172505 GTTTGTTGTGATTTGTGACTGCA 58.827 39.130 0.00 0.00 0.00 4.41
120 121 3.419264 TGTTGTGATTTGTGACTGCAC 57.581 42.857 0.00 0.00 45.35 4.57
128 129 3.025619 GTGACTGCACAAGCGCTT 58.974 55.556 18.98 18.98 46.23 4.68
129 130 2.234613 GTGACTGCACAAGCGCTTA 58.765 52.632 24.55 6.21 46.23 3.09
130 131 0.110644 GTGACTGCACAAGCGCTTAC 60.111 55.000 24.55 15.70 46.23 2.34
131 132 1.130613 GACTGCACAAGCGCTTACG 59.869 57.895 24.55 17.52 46.23 3.18
132 133 1.282248 GACTGCACAAGCGCTTACGA 61.282 55.000 24.55 6.25 46.23 3.43
133 134 0.878523 ACTGCACAAGCGCTTACGAA 60.879 50.000 24.55 10.47 46.23 3.85
134 135 0.451135 CTGCACAAGCGCTTACGAAC 60.451 55.000 24.55 11.27 46.23 3.95
135 136 1.154469 GCACAAGCGCTTACGAACC 60.154 57.895 24.55 4.56 43.93 3.62
136 137 1.129809 CACAAGCGCTTACGAACCG 59.870 57.895 24.55 11.19 43.93 4.44
140 141 4.500568 GCGCTTACGAACCGCTGC 62.501 66.667 0.00 0.00 43.95 5.25
141 142 2.809601 CGCTTACGAACCGCTGCT 60.810 61.111 0.00 0.00 43.93 4.24
142 143 2.789203 CGCTTACGAACCGCTGCTC 61.789 63.158 0.00 0.00 43.93 4.26
143 144 2.789203 GCTTACGAACCGCTGCTCG 61.789 63.158 8.04 8.04 40.87 5.03
144 145 1.154093 CTTACGAACCGCTGCTCGA 60.154 57.895 15.33 0.00 41.67 4.04
145 146 0.525668 CTTACGAACCGCTGCTCGAT 60.526 55.000 15.33 4.14 41.67 3.59
146 147 0.800683 TTACGAACCGCTGCTCGATG 60.801 55.000 15.33 0.00 41.67 3.84
147 148 1.650314 TACGAACCGCTGCTCGATGA 61.650 55.000 15.33 0.00 41.67 2.92
148 149 2.226896 CGAACCGCTGCTCGATGAG 61.227 63.158 3.99 0.00 41.67 2.90
149 150 1.153745 GAACCGCTGCTCGATGAGT 60.154 57.895 0.00 0.00 41.67 3.41
150 151 0.737715 GAACCGCTGCTCGATGAGTT 60.738 55.000 0.00 0.00 41.67 3.01
151 152 0.530744 AACCGCTGCTCGATGAGTTA 59.469 50.000 0.00 0.00 41.67 2.24
152 153 0.530744 ACCGCTGCTCGATGAGTTAA 59.469 50.000 0.00 0.00 41.67 2.01
153 154 1.137086 ACCGCTGCTCGATGAGTTAAT 59.863 47.619 0.00 0.00 41.67 1.40
154 155 2.205074 CCGCTGCTCGATGAGTTAATT 58.795 47.619 0.00 0.00 41.67 1.40
155 156 2.219674 CCGCTGCTCGATGAGTTAATTC 59.780 50.000 0.00 0.00 41.67 2.17
156 157 2.219674 CGCTGCTCGATGAGTTAATTCC 59.780 50.000 0.00 0.00 41.67 3.01
157 158 2.545946 GCTGCTCGATGAGTTAATTCCC 59.454 50.000 0.00 0.00 31.39 3.97
158 159 3.742640 GCTGCTCGATGAGTTAATTCCCT 60.743 47.826 0.00 0.00 31.39 4.20
159 160 4.054671 CTGCTCGATGAGTTAATTCCCTC 58.945 47.826 0.00 0.00 31.39 4.30
160 161 3.053455 GCTCGATGAGTTAATTCCCTCG 58.947 50.000 11.44 11.44 31.39 4.63
161 162 3.053455 CTCGATGAGTTAATTCCCTCGC 58.947 50.000 12.35 0.00 0.00 5.03
162 163 1.787155 CGATGAGTTAATTCCCTCGCG 59.213 52.381 0.00 0.00 0.00 5.87
163 164 2.798499 CGATGAGTTAATTCCCTCGCGT 60.798 50.000 5.77 0.00 0.00 6.01
164 165 2.004583 TGAGTTAATTCCCTCGCGTG 57.995 50.000 5.77 2.75 0.00 5.34
165 166 1.274167 TGAGTTAATTCCCTCGCGTGT 59.726 47.619 5.77 0.00 0.00 4.49
166 167 2.492881 TGAGTTAATTCCCTCGCGTGTA 59.507 45.455 5.77 0.00 0.00 2.90
167 168 3.056678 TGAGTTAATTCCCTCGCGTGTAA 60.057 43.478 5.77 0.44 0.00 2.41
168 169 3.928375 GAGTTAATTCCCTCGCGTGTAAA 59.072 43.478 5.77 0.08 0.00 2.01
169 170 3.930848 AGTTAATTCCCTCGCGTGTAAAG 59.069 43.478 5.77 0.00 0.00 1.85
170 171 2.467566 AATTCCCTCGCGTGTAAAGT 57.532 45.000 5.77 0.00 0.00 2.66
171 172 2.467566 ATTCCCTCGCGTGTAAAGTT 57.532 45.000 5.77 0.00 0.00 2.66
172 173 2.243602 TTCCCTCGCGTGTAAAGTTT 57.756 45.000 5.77 0.00 0.00 2.66
173 174 1.787012 TCCCTCGCGTGTAAAGTTTC 58.213 50.000 5.77 0.00 0.00 2.78
174 175 0.437295 CCCTCGCGTGTAAAGTTTCG 59.563 55.000 5.77 0.00 0.00 3.46
175 176 1.411394 CCTCGCGTGTAAAGTTTCGA 58.589 50.000 5.77 0.00 0.00 3.71
176 177 1.788308 CCTCGCGTGTAAAGTTTCGAA 59.212 47.619 5.77 0.00 0.00 3.71
177 178 2.160013 CCTCGCGTGTAAAGTTTCGAAG 60.160 50.000 5.77 0.00 0.00 3.79
178 179 1.190763 TCGCGTGTAAAGTTTCGAAGC 59.809 47.619 5.77 3.49 0.00 3.86
179 180 1.720547 CGCGTGTAAAGTTTCGAAGCC 60.721 52.381 8.51 0.00 0.00 4.35
180 181 1.529865 GCGTGTAAAGTTTCGAAGCCT 59.470 47.619 8.51 0.94 0.00 4.58
181 182 2.032290 GCGTGTAAAGTTTCGAAGCCTT 60.032 45.455 8.51 4.73 0.00 4.35
182 183 3.795659 CGTGTAAAGTTTCGAAGCCTTC 58.204 45.455 8.51 0.00 0.00 3.46
183 184 3.246699 CGTGTAAAGTTTCGAAGCCTTCA 59.753 43.478 8.51 3.32 0.00 3.02
184 185 4.608445 CGTGTAAAGTTTCGAAGCCTTCAG 60.608 45.833 8.51 0.00 0.00 3.02
185 186 3.250040 TGTAAAGTTTCGAAGCCTTCAGC 59.750 43.478 8.51 5.22 44.25 4.26
196 197 2.882742 GCCTTCAGCGAACTAACAAG 57.117 50.000 0.00 0.00 0.00 3.16
197 198 1.464997 GCCTTCAGCGAACTAACAAGG 59.535 52.381 0.00 0.00 32.83 3.61
198 199 2.870435 GCCTTCAGCGAACTAACAAGGA 60.870 50.000 0.00 0.00 31.96 3.36
199 200 3.600388 CCTTCAGCGAACTAACAAGGAT 58.400 45.455 0.00 0.00 31.96 3.24
200 201 3.372206 CCTTCAGCGAACTAACAAGGATG 59.628 47.826 0.00 0.00 31.96 3.51
201 202 2.972625 TCAGCGAACTAACAAGGATGG 58.027 47.619 0.00 0.00 0.00 3.51
202 203 2.301870 TCAGCGAACTAACAAGGATGGT 59.698 45.455 0.00 0.00 0.00 3.55
203 204 3.074412 CAGCGAACTAACAAGGATGGTT 58.926 45.455 0.00 0.00 0.00 3.67
204 205 3.502211 CAGCGAACTAACAAGGATGGTTT 59.498 43.478 0.00 0.00 0.00 3.27
205 206 4.023193 CAGCGAACTAACAAGGATGGTTTT 60.023 41.667 0.00 0.00 0.00 2.43
206 207 4.215613 AGCGAACTAACAAGGATGGTTTTC 59.784 41.667 0.00 0.00 0.00 2.29
207 208 4.023536 GCGAACTAACAAGGATGGTTTTCA 60.024 41.667 0.00 0.00 0.00 2.69
208 209 5.689819 CGAACTAACAAGGATGGTTTTCAG 58.310 41.667 0.00 0.00 0.00 3.02
209 210 5.453567 AACTAACAAGGATGGTTTTCAGC 57.546 39.130 0.00 0.00 0.00 4.26
213 214 3.680156 GGATGGTTTTCAGCCGCA 58.320 55.556 0.00 0.00 42.55 5.69
214 215 1.508088 GGATGGTTTTCAGCCGCAG 59.492 57.895 0.00 0.00 42.55 5.18
228 229 3.625745 CGCAGGTTTGGTCTAAGGT 57.374 52.632 0.00 0.00 0.00 3.50
229 230 2.754946 CGCAGGTTTGGTCTAAGGTA 57.245 50.000 0.00 0.00 0.00 3.08
230 231 2.618053 CGCAGGTTTGGTCTAAGGTAG 58.382 52.381 0.00 0.00 0.00 3.18
231 232 2.677037 CGCAGGTTTGGTCTAAGGTAGG 60.677 54.545 0.00 0.00 0.00 3.18
232 233 2.940083 GCAGGTTTGGTCTAAGGTAGGC 60.940 54.545 0.00 0.00 0.00 3.93
233 234 1.553704 AGGTTTGGTCTAAGGTAGGCG 59.446 52.381 0.00 0.00 0.00 5.52
234 235 1.551883 GGTTTGGTCTAAGGTAGGCGA 59.448 52.381 0.00 0.00 0.00 5.54
235 236 2.169978 GGTTTGGTCTAAGGTAGGCGAT 59.830 50.000 0.00 0.00 0.00 4.58
236 237 3.370209 GGTTTGGTCTAAGGTAGGCGATT 60.370 47.826 0.00 0.00 0.00 3.34
237 238 3.536956 TTGGTCTAAGGTAGGCGATTG 57.463 47.619 0.00 0.00 0.00 2.67
238 239 1.760613 TGGTCTAAGGTAGGCGATTGG 59.239 52.381 0.00 0.00 0.00 3.16
239 240 1.070289 GGTCTAAGGTAGGCGATTGGG 59.930 57.143 0.00 0.00 0.00 4.12
240 241 0.756903 TCTAAGGTAGGCGATTGGGC 59.243 55.000 0.00 0.00 42.69 5.36
251 252 4.820744 ATTGGGCTGGCGCGGAAT 62.821 61.111 8.83 0.00 36.88 3.01
260 261 3.577313 GCGCGGAATGCCCTCTTC 61.577 66.667 8.83 0.00 42.08 2.87
261 262 2.897350 CGCGGAATGCCCTCTTCC 60.897 66.667 0.00 0.00 42.08 3.46
262 263 2.517166 GCGGAATGCCCTCTTCCC 60.517 66.667 0.00 0.00 39.22 3.97
263 264 2.998097 CGGAATGCCCTCTTCCCA 59.002 61.111 0.00 0.00 39.22 4.37
264 265 1.153086 CGGAATGCCCTCTTCCCAG 60.153 63.158 0.00 0.00 39.22 4.45
265 266 1.626356 CGGAATGCCCTCTTCCCAGA 61.626 60.000 0.00 0.00 39.22 3.86
266 267 0.182299 GGAATGCCCTCTTCCCAGAG 59.818 60.000 0.00 0.00 45.79 3.35
276 277 2.744760 TCTTCCCAGAGAGACCTGATG 58.255 52.381 0.00 0.00 36.29 3.07
277 278 2.313041 TCTTCCCAGAGAGACCTGATGA 59.687 50.000 0.00 0.00 36.29 2.92
278 279 2.928036 TCCCAGAGAGACCTGATGAA 57.072 50.000 0.00 0.00 36.29 2.57
279 280 3.411454 TCCCAGAGAGACCTGATGAAT 57.589 47.619 0.00 0.00 36.29 2.57
280 281 3.036819 TCCCAGAGAGACCTGATGAATG 58.963 50.000 0.00 0.00 36.29 2.67
281 282 2.104451 CCCAGAGAGACCTGATGAATGG 59.896 54.545 0.00 0.00 36.29 3.16
282 283 2.770802 CCAGAGAGACCTGATGAATGGT 59.229 50.000 0.00 0.00 39.60 3.55
283 284 3.431905 CCAGAGAGACCTGATGAATGGTG 60.432 52.174 0.00 0.00 36.59 4.17
284 285 2.770802 AGAGAGACCTGATGAATGGTGG 59.229 50.000 0.00 0.00 36.59 4.61
285 286 2.503356 GAGAGACCTGATGAATGGTGGT 59.497 50.000 0.00 0.00 36.59 4.16
286 287 2.238144 AGAGACCTGATGAATGGTGGTG 59.762 50.000 0.00 0.00 36.59 4.17
287 288 1.283029 AGACCTGATGAATGGTGGTGG 59.717 52.381 0.00 0.00 36.59 4.61
288 289 0.323725 ACCTGATGAATGGTGGTGGC 60.324 55.000 0.00 0.00 34.90 5.01
289 290 0.033796 CCTGATGAATGGTGGTGGCT 60.034 55.000 0.00 0.00 0.00 4.75
290 291 1.212688 CCTGATGAATGGTGGTGGCTA 59.787 52.381 0.00 0.00 0.00 3.93
291 292 2.292267 CTGATGAATGGTGGTGGCTAC 58.708 52.381 0.00 0.00 0.00 3.58
292 293 1.632920 TGATGAATGGTGGTGGCTACA 59.367 47.619 1.52 0.00 0.00 2.74
293 294 2.241941 TGATGAATGGTGGTGGCTACAT 59.758 45.455 1.52 0.00 0.00 2.29
294 295 2.127271 TGAATGGTGGTGGCTACATG 57.873 50.000 1.52 0.00 0.00 3.21
295 296 0.740737 GAATGGTGGTGGCTACATGC 59.259 55.000 1.52 0.00 41.94 4.06
296 297 0.039472 AATGGTGGTGGCTACATGCA 59.961 50.000 1.52 0.00 45.15 3.96
297 298 0.039472 ATGGTGGTGGCTACATGCAA 59.961 50.000 1.52 0.00 45.15 4.08
298 299 0.608856 TGGTGGTGGCTACATGCAAG 60.609 55.000 1.52 0.00 45.15 4.01
299 300 0.322456 GGTGGTGGCTACATGCAAGA 60.322 55.000 1.52 0.00 45.15 3.02
300 301 1.533625 GTGGTGGCTACATGCAAGAA 58.466 50.000 1.52 0.00 45.15 2.52
301 302 1.470098 GTGGTGGCTACATGCAAGAAG 59.530 52.381 1.52 0.00 45.15 2.85
302 303 1.350684 TGGTGGCTACATGCAAGAAGA 59.649 47.619 1.52 0.00 45.15 2.87
303 304 2.012673 GGTGGCTACATGCAAGAAGAG 58.987 52.381 1.52 0.00 45.15 2.85
304 305 2.012673 GTGGCTACATGCAAGAAGAGG 58.987 52.381 0.00 0.00 45.15 3.69
305 306 1.065199 TGGCTACATGCAAGAAGAGGG 60.065 52.381 0.00 0.00 45.15 4.30
306 307 1.020437 GCTACATGCAAGAAGAGGGC 58.980 55.000 0.00 0.00 42.31 5.19
307 308 1.673168 CTACATGCAAGAAGAGGGCC 58.327 55.000 0.00 0.00 0.00 5.80
308 309 0.255890 TACATGCAAGAAGAGGGCCC 59.744 55.000 16.46 16.46 0.00 5.80
309 310 1.755783 CATGCAAGAAGAGGGCCCC 60.756 63.158 21.43 10.60 0.00 5.80
310 311 2.240918 ATGCAAGAAGAGGGCCCCA 61.241 57.895 21.43 6.90 0.00 4.96
311 312 2.044551 GCAAGAAGAGGGCCCCAG 60.045 66.667 21.43 1.35 0.00 4.45
312 313 2.606587 GCAAGAAGAGGGCCCCAGA 61.607 63.158 21.43 0.00 0.00 3.86
313 314 2.078452 CAAGAAGAGGGCCCCAGAA 58.922 57.895 21.43 0.00 0.00 3.02
314 315 0.405585 CAAGAAGAGGGCCCCAGAAA 59.594 55.000 21.43 0.00 0.00 2.52
315 316 1.158007 AAGAAGAGGGCCCCAGAAAA 58.842 50.000 21.43 0.00 0.00 2.29
316 317 1.158007 AGAAGAGGGCCCCAGAAAAA 58.842 50.000 21.43 0.00 0.00 1.94
317 318 1.203063 AGAAGAGGGCCCCAGAAAAAC 60.203 52.381 21.43 2.04 0.00 2.43
318 319 0.860457 AAGAGGGCCCCAGAAAAACT 59.140 50.000 21.43 0.00 0.00 2.66
319 320 0.113190 AGAGGGCCCCAGAAAAACTG 59.887 55.000 21.43 0.00 45.36 3.16
333 334 5.755849 AGAAAAACTGAAGGAGGACTTTGA 58.244 37.500 0.00 0.00 40.21 2.69
334 335 5.590663 AGAAAAACTGAAGGAGGACTTTGAC 59.409 40.000 0.00 0.00 40.21 3.18
335 336 4.503714 AAACTGAAGGAGGACTTTGACA 57.496 40.909 0.00 0.00 40.21 3.58
336 337 3.477210 ACTGAAGGAGGACTTTGACAC 57.523 47.619 0.00 0.00 40.21 3.67
337 338 2.104963 ACTGAAGGAGGACTTTGACACC 59.895 50.000 0.00 0.00 40.21 4.16
338 339 2.104792 CTGAAGGAGGACTTTGACACCA 59.895 50.000 0.00 0.00 40.21 4.17
339 340 2.711009 TGAAGGAGGACTTTGACACCAT 59.289 45.455 0.00 0.00 40.21 3.55
340 341 2.867109 AGGAGGACTTTGACACCATG 57.133 50.000 0.00 0.00 0.00 3.66
341 342 1.352352 AGGAGGACTTTGACACCATGG 59.648 52.381 11.19 11.19 0.00 3.66
342 343 1.073923 GGAGGACTTTGACACCATGGT 59.926 52.381 13.00 13.00 0.00 3.55
343 344 6.810941 AAGGAGGACTTTGACACCATGGTG 62.811 50.000 37.81 37.81 43.49 4.17
354 355 2.691409 ACCATGGTGATTCTGGTACG 57.309 50.000 18.99 0.00 41.43 3.67
355 356 1.299541 CCATGGTGATTCTGGTACGC 58.700 55.000 2.57 0.00 0.00 4.42
356 357 1.406751 CCATGGTGATTCTGGTACGCA 60.407 52.381 2.57 0.00 0.00 5.24
357 358 1.935873 CATGGTGATTCTGGTACGCAG 59.064 52.381 5.31 5.31 0.00 5.18
358 359 0.249120 TGGTGATTCTGGTACGCAGG 59.751 55.000 10.33 0.00 0.00 4.85
359 360 0.535335 GGTGATTCTGGTACGCAGGA 59.465 55.000 10.33 3.75 0.00 3.86
360 361 1.471676 GGTGATTCTGGTACGCAGGAG 60.472 57.143 10.33 0.00 0.00 3.69
361 362 0.824109 TGATTCTGGTACGCAGGAGG 59.176 55.000 10.33 0.00 0.00 4.30
362 363 1.112113 GATTCTGGTACGCAGGAGGA 58.888 55.000 10.33 0.00 0.00 3.71
363 364 1.689273 GATTCTGGTACGCAGGAGGAT 59.311 52.381 10.33 2.68 0.00 3.24
364 365 2.447408 TTCTGGTACGCAGGAGGATA 57.553 50.000 10.33 0.00 0.00 2.59
365 366 2.677542 TCTGGTACGCAGGAGGATAT 57.322 50.000 10.33 0.00 0.00 1.63
366 367 2.239400 TCTGGTACGCAGGAGGATATG 58.761 52.381 10.33 0.00 0.00 1.78
367 368 1.273606 CTGGTACGCAGGAGGATATGG 59.726 57.143 4.04 0.00 0.00 2.74
368 369 1.133294 TGGTACGCAGGAGGATATGGA 60.133 52.381 0.00 0.00 0.00 3.41
369 370 1.968493 GGTACGCAGGAGGATATGGAA 59.032 52.381 0.00 0.00 0.00 3.53
370 371 2.367567 GGTACGCAGGAGGATATGGAAA 59.632 50.000 0.00 0.00 0.00 3.13
371 372 2.918712 ACGCAGGAGGATATGGAAAG 57.081 50.000 0.00 0.00 0.00 2.62
372 373 2.398588 ACGCAGGAGGATATGGAAAGA 58.601 47.619 0.00 0.00 0.00 2.52
373 374 2.366916 ACGCAGGAGGATATGGAAAGAG 59.633 50.000 0.00 0.00 0.00 2.85
374 375 2.630098 CGCAGGAGGATATGGAAAGAGA 59.370 50.000 0.00 0.00 0.00 3.10
375 376 3.305950 CGCAGGAGGATATGGAAAGAGAG 60.306 52.174 0.00 0.00 0.00 3.20
376 377 3.007831 GCAGGAGGATATGGAAAGAGAGG 59.992 52.174 0.00 0.00 0.00 3.69
377 378 4.487804 CAGGAGGATATGGAAAGAGAGGA 58.512 47.826 0.00 0.00 0.00 3.71
378 379 4.904251 CAGGAGGATATGGAAAGAGAGGAA 59.096 45.833 0.00 0.00 0.00 3.36
379 380 5.367937 CAGGAGGATATGGAAAGAGAGGAAA 59.632 44.000 0.00 0.00 0.00 3.13
380 381 6.044171 CAGGAGGATATGGAAAGAGAGGAAAT 59.956 42.308 0.00 0.00 0.00 2.17
381 382 6.044171 AGGAGGATATGGAAAGAGAGGAAATG 59.956 42.308 0.00 0.00 0.00 2.32
382 383 6.198237 AGGATATGGAAAGAGAGGAAATGG 57.802 41.667 0.00 0.00 0.00 3.16
383 384 5.674035 AGGATATGGAAAGAGAGGAAATGGT 59.326 40.000 0.00 0.00 0.00 3.55
424 425 4.380531 CTGCAAGTCAAGTCAAGGTAAGA 58.619 43.478 0.00 0.00 0.00 2.10
430 431 2.029290 TCAAGTCAAGGTAAGAGGACGC 60.029 50.000 0.00 0.00 35.49 5.19
439 440 0.669318 TAAGAGGACGCCGTTTGCTG 60.669 55.000 0.00 0.00 38.05 4.41
445 446 4.999939 CGCCGTTTGCTGTTGCCC 63.000 66.667 0.00 0.00 38.71 5.36
474 475 6.843752 TCAGGAACTTTAAATGTAGGGACAA 58.156 36.000 0.00 0.00 35.88 3.18
475 476 6.940298 TCAGGAACTTTAAATGTAGGGACAAG 59.060 38.462 0.00 0.00 35.88 3.16
482 483 9.588096 ACTTTAAATGTAGGGACAAGAATTTCT 57.412 29.630 0.00 0.00 39.59 2.52
484 485 9.807921 TTTAAATGTAGGGACAAGAATTTCTCT 57.192 29.630 0.00 0.00 39.59 3.10
485 486 9.807921 TTAAATGTAGGGACAAGAATTTCTCTT 57.192 29.630 0.00 0.00 45.80 2.85
486 487 8.712228 AAATGTAGGGACAAGAATTTCTCTTT 57.288 30.769 0.00 0.00 41.97 2.52
487 488 7.929941 ATGTAGGGACAAGAATTTCTCTTTC 57.070 36.000 0.00 0.00 41.97 2.62
488 489 7.079451 TGTAGGGACAAGAATTTCTCTTTCT 57.921 36.000 0.00 0.00 41.97 2.52
489 490 6.936900 TGTAGGGACAAGAATTTCTCTTTCTG 59.063 38.462 0.00 0.00 41.97 3.02
490 491 6.192970 AGGGACAAGAATTTCTCTTTCTGA 57.807 37.500 0.00 0.00 41.97 3.27
491 492 6.788218 AGGGACAAGAATTTCTCTTTCTGAT 58.212 36.000 0.00 0.00 41.97 2.90
492 493 7.922382 AGGGACAAGAATTTCTCTTTCTGATA 58.078 34.615 0.00 0.00 41.97 2.15
493 494 8.046107 AGGGACAAGAATTTCTCTTTCTGATAG 58.954 37.037 0.00 0.00 41.97 2.08
494 495 7.201688 GGGACAAGAATTTCTCTTTCTGATAGC 60.202 40.741 0.00 0.00 41.97 2.97
495 496 7.201688 GGACAAGAATTTCTCTTTCTGATAGCC 60.202 40.741 0.00 0.00 41.97 3.93
496 497 7.401246 ACAAGAATTTCTCTTTCTGATAGCCT 58.599 34.615 0.00 0.00 41.97 4.58
497 498 7.552330 ACAAGAATTTCTCTTTCTGATAGCCTC 59.448 37.037 0.00 0.00 41.97 4.70
498 499 7.192852 AGAATTTCTCTTTCTGATAGCCTCA 57.807 36.000 0.00 0.00 32.30 3.86
499 500 7.804147 AGAATTTCTCTTTCTGATAGCCTCAT 58.196 34.615 0.00 0.00 32.30 2.90
500 501 7.716123 AGAATTTCTCTTTCTGATAGCCTCATG 59.284 37.037 0.00 0.00 32.30 3.07
501 502 4.952071 TCTCTTTCTGATAGCCTCATGG 57.048 45.455 0.00 0.00 32.10 3.66
502 503 4.293494 TCTCTTTCTGATAGCCTCATGGT 58.707 43.478 0.00 0.00 32.10 3.55
503 504 4.718774 TCTCTTTCTGATAGCCTCATGGTT 59.281 41.667 0.00 0.00 32.10 3.67
504 505 4.774124 TCTTTCTGATAGCCTCATGGTTG 58.226 43.478 0.00 0.00 32.10 3.77
505 506 4.471025 TCTTTCTGATAGCCTCATGGTTGA 59.529 41.667 0.00 0.00 32.10 3.18
506 507 3.827008 TCTGATAGCCTCATGGTTGAC 57.173 47.619 0.00 0.00 32.10 3.18
507 508 3.378512 TCTGATAGCCTCATGGTTGACT 58.621 45.455 0.00 0.00 32.10 3.41
508 509 3.386078 TCTGATAGCCTCATGGTTGACTC 59.614 47.826 0.00 0.00 32.10 3.36
509 510 2.101415 TGATAGCCTCATGGTTGACTCG 59.899 50.000 0.00 0.00 35.27 4.18
510 511 0.175760 TAGCCTCATGGTTGACTCGC 59.824 55.000 0.00 0.00 35.27 5.03
511 512 1.078848 GCCTCATGGTTGACTCGCT 60.079 57.895 0.00 0.00 35.27 4.93
512 513 0.674895 GCCTCATGGTTGACTCGCTT 60.675 55.000 0.00 0.00 35.27 4.68
513 514 1.813513 CCTCATGGTTGACTCGCTTT 58.186 50.000 0.00 0.00 0.00 3.51
514 515 2.154462 CCTCATGGTTGACTCGCTTTT 58.846 47.619 0.00 0.00 0.00 2.27
515 516 2.554032 CCTCATGGTTGACTCGCTTTTT 59.446 45.455 0.00 0.00 0.00 1.94
516 517 3.365364 CCTCATGGTTGACTCGCTTTTTC 60.365 47.826 0.00 0.00 0.00 2.29
517 518 3.210227 TCATGGTTGACTCGCTTTTTCA 58.790 40.909 0.00 0.00 0.00 2.69
518 519 3.250762 TCATGGTTGACTCGCTTTTTCAG 59.749 43.478 0.00 0.00 0.00 3.02
535 536 8.832487 CTTTTTCAGCATGCAATTACTAGTAG 57.168 34.615 21.98 0.00 34.76 2.57
536 537 7.921786 TTTTCAGCATGCAATTACTAGTAGT 57.078 32.000 21.98 8.14 34.76 2.73
537 538 9.443323 TTTTTCAGCATGCAATTACTAGTAGTA 57.557 29.630 21.98 5.90 34.76 1.82
538 539 9.613428 TTTTCAGCATGCAATTACTAGTAGTAT 57.387 29.630 21.98 0.00 34.76 2.12
539 540 8.818141 TTCAGCATGCAATTACTAGTAGTATC 57.182 34.615 21.98 2.56 34.76 2.24
554 555 9.969001 ACTAGTAGTATCTTTCTTCAGAGAAGT 57.031 33.333 0.00 0.00 42.55 3.01
559 560 8.062065 AGTATCTTTCTTCAGAGAAGTACTGG 57.938 38.462 0.00 0.00 42.55 4.00
572 573 0.326927 GTACTGGTTGGCTGGCCTAA 59.673 55.000 13.05 3.18 36.94 2.69
573 574 0.618458 TACTGGTTGGCTGGCCTAAG 59.382 55.000 13.05 0.00 36.94 2.18
574 575 2.035626 TGGTTGGCTGGCCTAAGC 59.964 61.111 13.05 5.18 42.75 3.09
600 601 4.162509 AGCCACAGAATCCTACTACCTTTC 59.837 45.833 0.00 0.00 0.00 2.62
601 602 4.162509 GCCACAGAATCCTACTACCTTTCT 59.837 45.833 0.00 0.00 0.00 2.52
603 604 6.342111 CCACAGAATCCTACTACCTTTCTTC 58.658 44.000 0.00 0.00 0.00 2.87
604 605 6.070767 CCACAGAATCCTACTACCTTTCTTCA 60.071 42.308 0.00 0.00 0.00 3.02
605 606 7.038659 CACAGAATCCTACTACCTTTCTTCAG 58.961 42.308 0.00 0.00 0.00 3.02
631 639 8.904099 ATATAAATACTGGTTGACTGGCTTAC 57.096 34.615 0.00 0.00 0.00 2.34
632 640 3.629142 ATACTGGTTGACTGGCTTACC 57.371 47.619 0.00 0.00 0.00 2.85
633 641 0.034896 ACTGGTTGACTGGCTTACCG 59.965 55.000 1.82 0.39 39.70 4.02
634 642 0.320374 CTGGTTGACTGGCTTACCGA 59.680 55.000 1.82 0.00 39.70 4.69
635 643 0.759959 TGGTTGACTGGCTTACCGAA 59.240 50.000 1.82 0.00 39.70 4.30
636 644 1.270625 TGGTTGACTGGCTTACCGAAG 60.271 52.381 1.82 0.00 39.70 3.79
654 666 0.755327 AGCCACAGAACAACAACCCC 60.755 55.000 0.00 0.00 0.00 4.95
655 667 1.744320 GCCACAGAACAACAACCCCC 61.744 60.000 0.00 0.00 0.00 5.40
665 677 0.399376 AACAACCCCCTTCCCAAACC 60.399 55.000 0.00 0.00 0.00 3.27
667 679 2.021652 AACCCCCTTCCCAAACCCA 61.022 57.895 0.00 0.00 0.00 4.51
675 687 1.355720 CTTCCCAAACCCAGACATCCT 59.644 52.381 0.00 0.00 0.00 3.24
680 692 2.648059 CAAACCCAGACATCCTCCATC 58.352 52.381 0.00 0.00 0.00 3.51
681 693 1.216990 AACCCAGACATCCTCCATCC 58.783 55.000 0.00 0.00 0.00 3.51
682 694 0.044702 ACCCAGACATCCTCCATCCA 59.955 55.000 0.00 0.00 0.00 3.41
683 695 1.345838 ACCCAGACATCCTCCATCCAT 60.346 52.381 0.00 0.00 0.00 3.41
705 717 2.346739 GCAGCTGCAGTCTCCTGT 59.653 61.111 33.36 0.00 41.02 4.00
706 718 1.302351 GCAGCTGCAGTCTCCTGTT 60.302 57.895 33.36 0.00 41.02 3.16
707 719 1.575576 GCAGCTGCAGTCTCCTGTTG 61.576 60.000 33.36 0.00 41.02 3.33
708 720 0.954449 CAGCTGCAGTCTCCTGTTGG 60.954 60.000 16.64 0.00 41.02 3.77
711 723 0.673022 CTGCAGTCTCCTGTTGGCTC 60.673 60.000 5.25 0.00 41.02 4.70
714 726 0.036577 CAGTCTCCTGTTGGCTCCTG 60.037 60.000 0.00 0.00 33.80 3.86
715 727 1.376553 GTCTCCTGTTGGCTCCTGC 60.377 63.158 0.00 0.00 38.76 4.85
718 730 0.959372 CTCCTGTTGGCTCCTGCTTG 60.959 60.000 0.00 0.00 39.59 4.01
720 732 1.521450 CCTGTTGGCTCCTGCTTGTG 61.521 60.000 0.00 0.00 39.59 3.33
721 733 2.138656 CTGTTGGCTCCTGCTTGTGC 62.139 60.000 0.00 0.00 39.59 4.57
722 734 1.900498 GTTGGCTCCTGCTTGTGCT 60.900 57.895 0.00 0.00 40.48 4.40
723 735 0.606401 GTTGGCTCCTGCTTGTGCTA 60.606 55.000 0.00 0.00 40.48 3.49
729 741 2.042831 CCTGCTTGTGCTAGCCACC 61.043 63.158 13.29 0.37 44.01 4.61
731 743 1.302752 TGCTTGTGCTAGCCACCAG 60.303 57.895 13.29 12.16 44.01 4.00
732 744 2.042831 GCTTGTGCTAGCCACCAGG 61.043 63.158 13.29 7.98 44.01 4.45
778 793 1.002746 TATGCACAAGAAGCCGGCA 60.003 52.632 31.54 4.05 39.03 5.69
843 858 0.940126 CCGGCATCAGAAAAGATCCG 59.060 55.000 0.00 0.00 37.89 4.18
889 904 3.007920 AGGACTGCTGCCTCTGGG 61.008 66.667 0.00 0.00 0.00 4.45
934 949 1.375908 GGCCATGTTGTCGAGCTCA 60.376 57.895 15.40 0.00 0.00 4.26
1244 1259 5.710513 TGGAATCCTAATGTGCATTATGC 57.289 39.130 10.65 10.65 45.29 3.14
1298 1313 2.410939 GTGGTTACCACGTCTTCCTTC 58.589 52.381 19.33 0.00 44.95 3.46
1405 1420 4.130118 AGCACTTCGTCTTTCTGAATGTT 58.870 39.130 3.59 0.00 0.00 2.71
1476 1491 6.592994 CACTTGAGATGCTTGATCTAACAGAA 59.407 38.462 0.00 0.00 41.91 3.02
1483 1498 3.127030 GCTTGATCTAACAGAAAACGGGG 59.873 47.826 0.00 0.00 0.00 5.73
1596 1611 3.896888 TGGATGCAATGGGAAATATGACC 59.103 43.478 0.00 0.00 0.00 4.02
1662 1677 4.853924 AAGAACCGAAATGCTGAACAAT 57.146 36.364 0.00 0.00 0.00 2.71
2024 2039 5.045651 ACAACTCCCTACACATGATGATCAA 60.046 40.000 0.00 0.00 0.00 2.57
2028 2043 4.053983 CCCTACACATGATGATCAACTCG 58.946 47.826 0.00 0.00 0.00 4.18
2040 2055 0.976641 TCAACTCGCACTGGATTCCT 59.023 50.000 3.95 0.00 0.00 3.36
2073 2090 2.498167 CATCTGGCTTATTTCCCTCGG 58.502 52.381 0.00 0.00 0.00 4.63
2077 2094 0.880718 GGCTTATTTCCCTCGGAGCG 60.881 60.000 0.00 0.00 31.21 5.03
2117 2134 1.909700 TTGTGGCTTAAAGGGCAGAG 58.090 50.000 0.00 0.00 42.30 3.35
2169 2186 4.711399 CAAGCATAGTTGATCATCTCCCA 58.289 43.478 9.58 0.00 0.00 4.37
2389 2406 1.000394 GGCCACTACCGCAACAATTTT 60.000 47.619 0.00 0.00 0.00 1.82
2602 2630 6.387192 TCTGGTGAATTCCCTTCATTCTTA 57.613 37.500 2.27 0.00 45.36 2.10
2639 2667 5.809001 AGTTGATTCTACTTGATCTTGCCA 58.191 37.500 0.00 0.00 0.00 4.92
2652 2680 8.149647 ACTTGATCTTGCCAATAACAAATTTGA 58.850 29.630 24.64 3.48 0.00 2.69
2662 2690 8.250332 GCCAATAACAAATTTGATGGAGAGTTA 58.750 33.333 24.64 10.07 0.00 2.24
2665 2693 8.877864 ATAACAAATTTGATGGAGAGTTACCA 57.122 30.769 24.64 0.00 41.83 3.25
2677 2705 4.381411 GAGAGTTACCAACATGGATAGCC 58.619 47.826 2.85 0.00 40.96 3.93
2720 2748 2.591429 TCCGGCTGCGGCATAATG 60.591 61.111 21.31 2.90 40.87 1.90
2741 2769 7.595819 AATGTGTTTTCTGGTTCTATTCCAA 57.404 32.000 0.00 0.00 34.35 3.53
2747 2775 7.039784 TGTTTTCTGGTTCTATTCCAATTGAGG 60.040 37.037 7.12 0.00 34.35 3.86
2755 2783 5.245531 TCTATTCCAATTGAGGTCACACAC 58.754 41.667 7.12 0.00 0.00 3.82
2773 2801 3.627577 CACACCTTGGATACCTGCAATAC 59.372 47.826 0.00 0.00 31.80 1.89
2774 2802 3.523564 ACACCTTGGATACCTGCAATACT 59.476 43.478 0.00 0.00 31.80 2.12
2884 2912 2.079158 GGTAACCCTTTAACGTGGAGC 58.921 52.381 0.00 0.00 0.00 4.70
2887 2915 2.756840 ACCCTTTAACGTGGAGCTAC 57.243 50.000 0.00 0.00 0.00 3.58
2912 2940 1.525995 CCAGCAAACCCTGACACGT 60.526 57.895 0.00 0.00 34.77 4.49
2916 2944 1.857364 CAAACCCTGACACGTACGC 59.143 57.895 16.72 0.00 0.00 4.42
2919 2947 2.126071 CCCTGACACGTACGCTGG 60.126 66.667 16.72 12.20 0.00 4.85
2921 2949 1.154016 CCTGACACGTACGCTGGAG 60.154 63.158 16.72 12.12 0.00 3.86
2943 2971 8.377799 TGGAGCAAAATATGATGATAGCTTAGA 58.622 33.333 0.00 0.00 0.00 2.10
2983 3011 7.201617 GGTCAATACCTTGATTACACTAGCAAC 60.202 40.741 0.00 0.00 43.08 4.17
3058 3086 9.935241 GATATTCCAGCTGAAATAACATCTCTA 57.065 33.333 17.39 0.00 36.33 2.43
3118 3146 2.966516 GTCCGGTAAGATCCCAGAGAAT 59.033 50.000 0.00 0.00 0.00 2.40
3290 3318 1.554617 TCCAGACGCTCATTGATCCAA 59.445 47.619 0.00 0.00 0.00 3.53
3291 3319 2.027285 TCCAGACGCTCATTGATCCAAA 60.027 45.455 0.00 0.00 0.00 3.28
3292 3320 2.947652 CCAGACGCTCATTGATCCAAAT 59.052 45.455 0.00 0.00 0.00 2.32
3415 3443 2.097629 GGCGAGGTTTTTCTATCTTGGC 59.902 50.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.359706 GCATGTTTCGAGAACCAAGTTTT 58.640 39.130 0.00 0.00 0.00 2.43
4 5 1.798223 TCGCATGTTTCGAGAACCAAG 59.202 47.619 0.00 0.00 0.00 3.61
5 6 1.872388 TCGCATGTTTCGAGAACCAA 58.128 45.000 0.00 0.00 0.00 3.67
6 7 3.597550 TCGCATGTTTCGAGAACCA 57.402 47.368 0.00 0.00 0.00 3.67
12 13 2.342179 TGCAATACTCGCATGTTTCGA 58.658 42.857 0.00 0.00 33.55 3.71
13 14 2.804421 TGCAATACTCGCATGTTTCG 57.196 45.000 0.00 0.00 33.55 3.46
20 21 4.898829 ATAAGCAAATGCAATACTCGCA 57.101 36.364 8.28 0.00 45.16 5.10
21 22 5.516339 ACAAATAAGCAAATGCAATACTCGC 59.484 36.000 8.28 0.00 45.16 5.03
22 23 8.684655 CATACAAATAAGCAAATGCAATACTCG 58.315 33.333 8.28 0.00 45.16 4.18
23 24 9.734620 TCATACAAATAAGCAAATGCAATACTC 57.265 29.630 8.28 0.00 45.16 2.59
27 28 9.602568 TTCATCATACAAATAAGCAAATGCAAT 57.397 25.926 8.28 0.00 45.16 3.56
28 29 8.999220 TTCATCATACAAATAAGCAAATGCAA 57.001 26.923 8.28 0.00 45.16 4.08
33 34 9.955208 CAGCTATTCATCATACAAATAAGCAAA 57.045 29.630 0.00 0.00 0.00 3.68
34 35 8.077991 GCAGCTATTCATCATACAAATAAGCAA 58.922 33.333 0.00 0.00 0.00 3.91
35 36 7.229106 TGCAGCTATTCATCATACAAATAAGCA 59.771 33.333 0.00 0.00 0.00 3.91
36 37 7.587629 TGCAGCTATTCATCATACAAATAAGC 58.412 34.615 0.00 0.00 0.00 3.09
37 38 9.556030 CATGCAGCTATTCATCATACAAATAAG 57.444 33.333 0.00 0.00 0.00 1.73
38 39 9.070179 ACATGCAGCTATTCATCATACAAATAA 57.930 29.630 0.00 0.00 0.00 1.40
39 40 8.625786 ACATGCAGCTATTCATCATACAAATA 57.374 30.769 0.00 0.00 0.00 1.40
40 41 7.520451 ACATGCAGCTATTCATCATACAAAT 57.480 32.000 0.00 0.00 0.00 2.32
41 42 6.947644 ACATGCAGCTATTCATCATACAAA 57.052 33.333 0.00 0.00 0.00 2.83
42 43 6.991531 TGTACATGCAGCTATTCATCATACAA 59.008 34.615 0.00 0.00 0.00 2.41
43 44 6.523840 TGTACATGCAGCTATTCATCATACA 58.476 36.000 0.00 0.00 0.00 2.29
44 45 7.606858 ATGTACATGCAGCTATTCATCATAC 57.393 36.000 7.78 0.00 0.00 2.39
45 46 7.063780 CGAATGTACATGCAGCTATTCATCATA 59.936 37.037 14.37 0.00 0.00 2.15
46 47 6.128363 CGAATGTACATGCAGCTATTCATCAT 60.128 38.462 14.37 0.00 0.00 2.45
47 48 5.178067 CGAATGTACATGCAGCTATTCATCA 59.822 40.000 14.37 0.00 0.00 3.07
48 49 5.615708 CGAATGTACATGCAGCTATTCATC 58.384 41.667 14.37 0.70 0.00 2.92
49 50 4.083643 GCGAATGTACATGCAGCTATTCAT 60.084 41.667 14.37 0.00 0.00 2.57
50 51 3.248363 GCGAATGTACATGCAGCTATTCA 59.752 43.478 14.37 0.00 0.00 2.57
51 52 3.248363 TGCGAATGTACATGCAGCTATTC 59.752 43.478 22.66 10.44 32.73 1.75
52 53 3.002656 GTGCGAATGTACATGCAGCTATT 59.997 43.478 22.66 3.60 38.14 1.73
53 54 2.545526 GTGCGAATGTACATGCAGCTAT 59.454 45.455 22.66 3.53 38.14 2.97
54 55 1.933181 GTGCGAATGTACATGCAGCTA 59.067 47.619 22.66 12.15 38.14 3.32
55 56 0.729116 GTGCGAATGTACATGCAGCT 59.271 50.000 22.66 4.79 38.14 4.24
56 57 0.447406 TGTGCGAATGTACATGCAGC 59.553 50.000 18.32 18.28 38.14 5.25
57 58 2.898181 TTGTGCGAATGTACATGCAG 57.102 45.000 18.32 10.29 40.52 4.41
58 59 2.095314 CCTTTGTGCGAATGTACATGCA 60.095 45.455 14.37 14.67 40.52 3.96
59 60 2.161410 TCCTTTGTGCGAATGTACATGC 59.839 45.455 9.63 6.42 40.52 4.06
60 61 4.418013 TTCCTTTGTGCGAATGTACATG 57.582 40.909 9.63 0.00 40.52 3.21
61 62 6.037172 GTCTATTCCTTTGTGCGAATGTACAT 59.963 38.462 1.41 1.41 40.52 2.29
62 63 5.350365 GTCTATTCCTTTGTGCGAATGTACA 59.650 40.000 0.00 0.00 39.05 2.90
63 64 5.350365 TGTCTATTCCTTTGTGCGAATGTAC 59.650 40.000 0.00 0.00 31.33 2.90
64 65 5.350365 GTGTCTATTCCTTTGTGCGAATGTA 59.650 40.000 0.00 0.00 31.33 2.29
65 66 4.154195 GTGTCTATTCCTTTGTGCGAATGT 59.846 41.667 0.00 0.00 31.33 2.71
66 67 4.154015 TGTGTCTATTCCTTTGTGCGAATG 59.846 41.667 0.00 0.00 31.33 2.67
67 68 4.323417 TGTGTCTATTCCTTTGTGCGAAT 58.677 39.130 0.00 0.00 33.39 3.34
68 69 3.734463 TGTGTCTATTCCTTTGTGCGAA 58.266 40.909 0.00 0.00 0.00 4.70
69 70 3.325870 CTGTGTCTATTCCTTTGTGCGA 58.674 45.455 0.00 0.00 0.00 5.10
70 71 2.416547 CCTGTGTCTATTCCTTTGTGCG 59.583 50.000 0.00 0.00 0.00 5.34
71 72 2.162408 GCCTGTGTCTATTCCTTTGTGC 59.838 50.000 0.00 0.00 0.00 4.57
72 73 2.416547 CGCCTGTGTCTATTCCTTTGTG 59.583 50.000 0.00 0.00 0.00 3.33
73 74 2.038557 ACGCCTGTGTCTATTCCTTTGT 59.961 45.455 0.00 0.00 0.00 2.83
74 75 2.673368 GACGCCTGTGTCTATTCCTTTG 59.327 50.000 3.66 0.00 35.95 2.77
75 76 2.674177 CGACGCCTGTGTCTATTCCTTT 60.674 50.000 8.98 0.00 36.71 3.11
76 77 1.135083 CGACGCCTGTGTCTATTCCTT 60.135 52.381 8.98 0.00 36.71 3.36
77 78 0.456221 CGACGCCTGTGTCTATTCCT 59.544 55.000 8.98 0.00 36.71 3.36
78 79 0.527817 CCGACGCCTGTGTCTATTCC 60.528 60.000 8.98 0.00 36.71 3.01
79 80 0.172803 ACCGACGCCTGTGTCTATTC 59.827 55.000 8.98 0.00 36.71 1.75
80 81 0.606604 AACCGACGCCTGTGTCTATT 59.393 50.000 8.98 1.01 36.71 1.73
81 82 0.606604 AAACCGACGCCTGTGTCTAT 59.393 50.000 8.98 0.00 36.71 1.98
82 83 0.319211 CAAACCGACGCCTGTGTCTA 60.319 55.000 8.98 0.00 36.71 2.59
83 84 1.594293 CAAACCGACGCCTGTGTCT 60.594 57.895 8.98 0.00 36.71 3.41
84 85 1.433837 AACAAACCGACGCCTGTGTC 61.434 55.000 0.75 0.75 35.49 3.67
85 86 1.450669 AACAAACCGACGCCTGTGT 60.451 52.632 0.00 0.00 0.00 3.72
86 87 1.010125 CAACAAACCGACGCCTGTG 60.010 57.895 0.00 0.00 0.00 3.66
87 88 1.450669 ACAACAAACCGACGCCTGT 60.451 52.632 0.00 0.00 0.00 4.00
88 89 1.010125 CACAACAAACCGACGCCTG 60.010 57.895 0.00 0.00 0.00 4.85
89 90 0.534203 ATCACAACAAACCGACGCCT 60.534 50.000 0.00 0.00 0.00 5.52
90 91 0.309612 AATCACAACAAACCGACGCC 59.690 50.000 0.00 0.00 0.00 5.68
91 92 1.778591 CAAATCACAACAAACCGACGC 59.221 47.619 0.00 0.00 0.00 5.19
92 93 2.781101 CACAAATCACAACAAACCGACG 59.219 45.455 0.00 0.00 0.00 5.12
93 94 3.789224 GTCACAAATCACAACAAACCGAC 59.211 43.478 0.00 0.00 0.00 4.79
94 95 3.692101 AGTCACAAATCACAACAAACCGA 59.308 39.130 0.00 0.00 0.00 4.69
95 96 3.790820 CAGTCACAAATCACAACAAACCG 59.209 43.478 0.00 0.00 0.00 4.44
96 97 3.551485 GCAGTCACAAATCACAACAAACC 59.449 43.478 0.00 0.00 0.00 3.27
97 98 4.031652 GTGCAGTCACAAATCACAACAAAC 59.968 41.667 0.00 0.00 42.66 2.93
98 99 4.172505 GTGCAGTCACAAATCACAACAAA 58.827 39.130 0.00 0.00 42.66 2.83
99 100 3.768406 GTGCAGTCACAAATCACAACAA 58.232 40.909 0.00 0.00 42.66 2.83
100 101 3.419264 GTGCAGTCACAAATCACAACA 57.581 42.857 0.00 0.00 42.66 3.33
111 112 0.110644 GTAAGCGCTTGTGCAGTCAC 60.111 55.000 32.23 15.82 43.40 3.67
112 113 1.556591 CGTAAGCGCTTGTGCAGTCA 61.557 55.000 32.23 6.92 39.64 3.41
113 114 1.130613 CGTAAGCGCTTGTGCAGTC 59.869 57.895 32.23 11.92 39.64 3.51
114 115 0.878523 TTCGTAAGCGCTTGTGCAGT 60.879 50.000 32.23 6.85 39.64 4.40
115 116 0.451135 GTTCGTAAGCGCTTGTGCAG 60.451 55.000 32.23 17.32 39.64 4.41
116 117 1.567537 GTTCGTAAGCGCTTGTGCA 59.432 52.632 32.23 9.85 39.64 4.57
117 118 1.154469 GGTTCGTAAGCGCTTGTGC 60.154 57.895 32.23 19.68 38.14 4.57
118 119 1.129809 CGGTTCGTAAGCGCTTGTG 59.870 57.895 32.23 22.80 45.79 3.33
119 120 3.545911 CGGTTCGTAAGCGCTTGT 58.454 55.556 32.23 10.24 45.79 3.16
125 126 2.789203 CGAGCAGCGGTTCGTAAGC 61.789 63.158 14.44 0.00 42.01 3.09
126 127 0.525668 ATCGAGCAGCGGTTCGTAAG 60.526 55.000 20.78 0.00 46.27 2.34
127 128 0.800683 CATCGAGCAGCGGTTCGTAA 60.801 55.000 20.78 5.08 46.27 3.18
128 129 1.226575 CATCGAGCAGCGGTTCGTA 60.227 57.895 20.78 9.70 46.27 3.43
129 130 2.507102 CATCGAGCAGCGGTTCGT 60.507 61.111 20.78 7.52 46.27 3.85
131 132 0.737715 AACTCATCGAGCAGCGGTTC 60.738 55.000 0.00 0.00 41.33 3.62
132 133 0.530744 TAACTCATCGAGCAGCGGTT 59.469 50.000 0.00 0.00 41.33 4.44
133 134 0.530744 TTAACTCATCGAGCAGCGGT 59.469 50.000 0.00 0.00 41.33 5.68
134 135 1.858091 ATTAACTCATCGAGCAGCGG 58.142 50.000 0.00 0.00 41.33 5.52
135 136 2.219674 GGAATTAACTCATCGAGCAGCG 59.780 50.000 0.00 0.00 42.69 5.18
136 137 2.545946 GGGAATTAACTCATCGAGCAGC 59.454 50.000 0.00 0.00 32.04 5.25
137 138 4.054671 GAGGGAATTAACTCATCGAGCAG 58.945 47.826 0.00 0.00 33.95 4.24
138 139 3.490933 CGAGGGAATTAACTCATCGAGCA 60.491 47.826 5.21 0.00 33.36 4.26
139 140 3.053455 CGAGGGAATTAACTCATCGAGC 58.947 50.000 5.21 0.00 33.36 5.03
140 141 3.053455 GCGAGGGAATTAACTCATCGAG 58.947 50.000 12.96 0.00 33.36 4.04
141 142 2.543031 CGCGAGGGAATTAACTCATCGA 60.543 50.000 12.96 0.00 33.85 3.59
142 143 1.787155 CGCGAGGGAATTAACTCATCG 59.213 52.381 0.00 6.45 33.36 3.84
143 144 2.540101 CACGCGAGGGAATTAACTCATC 59.460 50.000 15.93 1.00 35.60 2.92
144 145 2.093658 ACACGCGAGGGAATTAACTCAT 60.094 45.455 15.93 0.00 38.45 2.90
145 146 1.274167 ACACGCGAGGGAATTAACTCA 59.726 47.619 15.93 0.00 38.45 3.41
146 147 2.005971 ACACGCGAGGGAATTAACTC 57.994 50.000 15.93 0.00 38.45 3.01
147 148 3.598019 TTACACGCGAGGGAATTAACT 57.402 42.857 15.93 0.00 38.45 2.24
148 149 3.681417 ACTTTACACGCGAGGGAATTAAC 59.319 43.478 15.93 0.00 38.45 2.01
149 150 3.929094 ACTTTACACGCGAGGGAATTAA 58.071 40.909 15.93 0.00 38.45 1.40
150 151 3.598019 ACTTTACACGCGAGGGAATTA 57.402 42.857 15.93 0.00 38.45 1.40
151 152 2.467566 ACTTTACACGCGAGGGAATT 57.532 45.000 15.93 0.00 38.45 2.17
152 153 2.467566 AACTTTACACGCGAGGGAAT 57.532 45.000 15.93 0.00 38.45 3.01
153 154 2.137523 GAAACTTTACACGCGAGGGAA 58.862 47.619 15.93 4.25 38.45 3.97
154 155 1.787012 GAAACTTTACACGCGAGGGA 58.213 50.000 15.93 0.00 38.45 4.20
155 156 0.437295 CGAAACTTTACACGCGAGGG 59.563 55.000 15.93 4.07 43.28 4.30
156 157 1.411394 TCGAAACTTTACACGCGAGG 58.589 50.000 15.93 7.12 0.00 4.63
157 158 2.717893 GCTTCGAAACTTTACACGCGAG 60.718 50.000 15.93 7.88 0.00 5.03
158 159 1.190763 GCTTCGAAACTTTACACGCGA 59.809 47.619 15.93 0.00 0.00 5.87
159 160 1.577221 GCTTCGAAACTTTACACGCG 58.423 50.000 3.53 3.53 0.00 6.01
160 161 1.529865 AGGCTTCGAAACTTTACACGC 59.470 47.619 0.00 0.00 0.00 5.34
161 162 3.246699 TGAAGGCTTCGAAACTTTACACG 59.753 43.478 21.42 0.00 0.00 4.49
162 163 4.773510 CTGAAGGCTTCGAAACTTTACAC 58.226 43.478 21.42 4.70 0.00 2.90
163 164 3.250040 GCTGAAGGCTTCGAAACTTTACA 59.750 43.478 21.42 8.85 38.06 2.41
164 165 3.664537 CGCTGAAGGCTTCGAAACTTTAC 60.665 47.826 21.42 5.52 39.13 2.01
165 166 2.478894 CGCTGAAGGCTTCGAAACTTTA 59.521 45.455 21.42 10.12 39.13 1.85
166 167 1.264288 CGCTGAAGGCTTCGAAACTTT 59.736 47.619 21.42 5.99 39.13 2.66
167 168 0.868406 CGCTGAAGGCTTCGAAACTT 59.132 50.000 21.42 12.91 39.13 2.66
168 169 0.033504 TCGCTGAAGGCTTCGAAACT 59.966 50.000 21.42 0.00 39.13 2.66
169 170 0.865769 TTCGCTGAAGGCTTCGAAAC 59.134 50.000 21.42 10.04 37.90 2.78
170 171 0.865769 GTTCGCTGAAGGCTTCGAAA 59.134 50.000 21.42 10.32 41.65 3.46
171 172 0.033504 AGTTCGCTGAAGGCTTCGAA 59.966 50.000 21.42 18.26 38.42 3.71
172 173 0.885879 TAGTTCGCTGAAGGCTTCGA 59.114 50.000 21.42 13.46 39.13 3.71
173 174 1.390463 GTTAGTTCGCTGAAGGCTTCG 59.610 52.381 21.42 16.56 39.13 3.79
174 175 2.413837 TGTTAGTTCGCTGAAGGCTTC 58.586 47.619 20.27 20.27 39.13 3.86
175 176 2.543777 TGTTAGTTCGCTGAAGGCTT 57.456 45.000 0.00 0.00 39.13 4.35
176 177 2.417719 CTTGTTAGTTCGCTGAAGGCT 58.582 47.619 0.00 0.00 39.13 4.58
177 178 1.464997 CCTTGTTAGTTCGCTGAAGGC 59.535 52.381 0.00 0.00 37.64 4.35
178 179 3.040147 TCCTTGTTAGTTCGCTGAAGG 57.960 47.619 0.00 0.00 33.88 3.46
179 180 3.372206 CCATCCTTGTTAGTTCGCTGAAG 59.628 47.826 0.00 0.00 0.00 3.02
180 181 3.244422 ACCATCCTTGTTAGTTCGCTGAA 60.244 43.478 0.00 0.00 0.00 3.02
181 182 2.301870 ACCATCCTTGTTAGTTCGCTGA 59.698 45.455 0.00 0.00 0.00 4.26
182 183 2.699954 ACCATCCTTGTTAGTTCGCTG 58.300 47.619 0.00 0.00 0.00 5.18
183 184 3.418684 AACCATCCTTGTTAGTTCGCT 57.581 42.857 0.00 0.00 0.00 4.93
184 185 4.023536 TGAAAACCATCCTTGTTAGTTCGC 60.024 41.667 0.00 0.00 0.00 4.70
185 186 5.682943 TGAAAACCATCCTTGTTAGTTCG 57.317 39.130 0.00 0.00 0.00 3.95
186 187 5.461526 GCTGAAAACCATCCTTGTTAGTTC 58.538 41.667 0.00 0.00 0.00 3.01
187 188 4.280929 GGCTGAAAACCATCCTTGTTAGTT 59.719 41.667 0.00 0.00 0.00 2.24
188 189 3.826729 GGCTGAAAACCATCCTTGTTAGT 59.173 43.478 0.00 0.00 0.00 2.24
189 190 3.119849 CGGCTGAAAACCATCCTTGTTAG 60.120 47.826 0.00 0.00 0.00 2.34
190 191 2.817258 CGGCTGAAAACCATCCTTGTTA 59.183 45.455 0.00 0.00 0.00 2.41
191 192 1.613437 CGGCTGAAAACCATCCTTGTT 59.387 47.619 0.00 0.00 0.00 2.83
192 193 1.247567 CGGCTGAAAACCATCCTTGT 58.752 50.000 0.00 0.00 0.00 3.16
193 194 0.109132 GCGGCTGAAAACCATCCTTG 60.109 55.000 0.00 0.00 0.00 3.61
194 195 0.539438 TGCGGCTGAAAACCATCCTT 60.539 50.000 0.00 0.00 0.00 3.36
195 196 0.962356 CTGCGGCTGAAAACCATCCT 60.962 55.000 0.00 0.00 0.00 3.24
196 197 1.508088 CTGCGGCTGAAAACCATCC 59.492 57.895 0.00 0.00 0.00 3.51
197 198 1.244019 ACCTGCGGCTGAAAACCATC 61.244 55.000 8.57 0.00 0.00 3.51
198 199 0.827507 AACCTGCGGCTGAAAACCAT 60.828 50.000 8.57 0.00 0.00 3.55
199 200 1.040339 AAACCTGCGGCTGAAAACCA 61.040 50.000 8.57 0.00 0.00 3.67
200 201 0.597377 CAAACCTGCGGCTGAAAACC 60.597 55.000 8.57 0.00 0.00 3.27
201 202 0.597377 CCAAACCTGCGGCTGAAAAC 60.597 55.000 8.57 0.00 0.00 2.43
202 203 1.040339 ACCAAACCTGCGGCTGAAAA 61.040 50.000 8.57 0.00 0.00 2.29
203 204 1.452145 GACCAAACCTGCGGCTGAAA 61.452 55.000 8.57 0.00 0.00 2.69
204 205 1.896660 GACCAAACCTGCGGCTGAA 60.897 57.895 8.57 0.00 0.00 3.02
205 206 1.476845 TAGACCAAACCTGCGGCTGA 61.477 55.000 8.57 0.00 0.00 4.26
206 207 0.605319 TTAGACCAAACCTGCGGCTG 60.605 55.000 0.00 0.00 0.00 4.85
207 208 0.321653 CTTAGACCAAACCTGCGGCT 60.322 55.000 0.00 0.00 0.00 5.52
208 209 1.305930 CCTTAGACCAAACCTGCGGC 61.306 60.000 0.00 0.00 0.00 6.53
209 210 0.036306 ACCTTAGACCAAACCTGCGG 59.964 55.000 0.00 0.00 0.00 5.69
210 211 2.618053 CTACCTTAGACCAAACCTGCG 58.382 52.381 0.00 0.00 0.00 5.18
211 212 2.940083 GCCTACCTTAGACCAAACCTGC 60.940 54.545 0.00 0.00 0.00 4.85
212 213 2.677037 CGCCTACCTTAGACCAAACCTG 60.677 54.545 0.00 0.00 0.00 4.00
213 214 1.553704 CGCCTACCTTAGACCAAACCT 59.446 52.381 0.00 0.00 0.00 3.50
214 215 1.551883 TCGCCTACCTTAGACCAAACC 59.448 52.381 0.00 0.00 0.00 3.27
215 216 3.538634 ATCGCCTACCTTAGACCAAAC 57.461 47.619 0.00 0.00 0.00 2.93
216 217 3.370103 CCAATCGCCTACCTTAGACCAAA 60.370 47.826 0.00 0.00 0.00 3.28
217 218 2.169769 CCAATCGCCTACCTTAGACCAA 59.830 50.000 0.00 0.00 0.00 3.67
218 219 1.760613 CCAATCGCCTACCTTAGACCA 59.239 52.381 0.00 0.00 0.00 4.02
219 220 1.070289 CCCAATCGCCTACCTTAGACC 59.930 57.143 0.00 0.00 0.00 3.85
220 221 1.540580 GCCCAATCGCCTACCTTAGAC 60.541 57.143 0.00 0.00 0.00 2.59
221 222 0.756903 GCCCAATCGCCTACCTTAGA 59.243 55.000 0.00 0.00 0.00 2.10
222 223 0.759346 AGCCCAATCGCCTACCTTAG 59.241 55.000 0.00 0.00 0.00 2.18
223 224 0.468226 CAGCCCAATCGCCTACCTTA 59.532 55.000 0.00 0.00 0.00 2.69
224 225 1.224592 CAGCCCAATCGCCTACCTT 59.775 57.895 0.00 0.00 0.00 3.50
225 226 2.746375 CCAGCCCAATCGCCTACCT 61.746 63.158 0.00 0.00 0.00 3.08
226 227 2.203209 CCAGCCCAATCGCCTACC 60.203 66.667 0.00 0.00 0.00 3.18
227 228 2.902343 GCCAGCCCAATCGCCTAC 60.902 66.667 0.00 0.00 0.00 3.18
228 229 4.545706 CGCCAGCCCAATCGCCTA 62.546 66.667 0.00 0.00 0.00 3.93
234 235 4.820744 ATTCCGCGCCAGCCCAAT 62.821 61.111 0.00 0.00 41.18 3.16
244 245 2.897350 GGAAGAGGGCATTCCGCG 60.897 66.667 0.00 0.00 43.84 6.46
245 246 2.517166 GGGAAGAGGGCATTCCGC 60.517 66.667 8.66 0.00 46.05 5.54
246 247 1.153086 CTGGGAAGAGGGCATTCCG 60.153 63.158 8.66 0.00 46.05 4.30
247 248 0.182299 CTCTGGGAAGAGGGCATTCC 59.818 60.000 6.79 6.79 44.65 3.01
248 249 1.140652 CTCTCTGGGAAGAGGGCATTC 59.859 57.143 3.06 0.00 39.33 2.67
249 250 1.211456 CTCTCTGGGAAGAGGGCATT 58.789 55.000 3.06 0.00 39.33 3.56
250 251 0.341258 TCTCTCTGGGAAGAGGGCAT 59.659 55.000 3.06 0.00 42.58 4.40
251 252 0.616111 GTCTCTCTGGGAAGAGGGCA 60.616 60.000 3.06 0.00 42.58 5.36
252 253 1.334384 GGTCTCTCTGGGAAGAGGGC 61.334 65.000 3.06 0.00 42.58 5.19
253 254 0.338120 AGGTCTCTCTGGGAAGAGGG 59.662 60.000 3.06 0.00 42.58 4.30
254 255 1.006519 TCAGGTCTCTCTGGGAAGAGG 59.993 57.143 3.06 0.00 42.58 3.69
255 256 2.523325 TCAGGTCTCTCTGGGAAGAG 57.477 55.000 0.00 0.00 43.50 2.85
256 257 2.313041 TCATCAGGTCTCTCTGGGAAGA 59.687 50.000 0.00 0.00 35.58 2.87
257 258 2.744760 TCATCAGGTCTCTCTGGGAAG 58.255 52.381 0.00 0.00 35.58 3.46
258 259 2.928036 TCATCAGGTCTCTCTGGGAA 57.072 50.000 0.00 0.00 35.58 3.97
259 260 2.928036 TTCATCAGGTCTCTCTGGGA 57.072 50.000 0.00 0.00 35.58 4.37
260 261 2.104451 CCATTCATCAGGTCTCTCTGGG 59.896 54.545 0.00 0.00 35.58 4.45
261 262 2.770802 ACCATTCATCAGGTCTCTCTGG 59.229 50.000 0.00 0.00 35.58 3.86
262 263 3.431905 CCACCATTCATCAGGTCTCTCTG 60.432 52.174 0.00 0.00 35.52 3.35
263 264 2.770802 CCACCATTCATCAGGTCTCTCT 59.229 50.000 0.00 0.00 35.52 3.10
264 265 2.503356 ACCACCATTCATCAGGTCTCTC 59.497 50.000 0.00 0.00 35.52 3.20
265 266 2.238144 CACCACCATTCATCAGGTCTCT 59.762 50.000 0.00 0.00 35.52 3.10
266 267 2.636830 CACCACCATTCATCAGGTCTC 58.363 52.381 0.00 0.00 35.52 3.36
267 268 1.283029 CCACCACCATTCATCAGGTCT 59.717 52.381 0.00 0.00 35.52 3.85
268 269 1.755179 CCACCACCATTCATCAGGTC 58.245 55.000 0.00 0.00 35.52 3.85
269 270 0.323725 GCCACCACCATTCATCAGGT 60.324 55.000 0.00 0.00 39.10 4.00
270 271 0.033796 AGCCACCACCATTCATCAGG 60.034 55.000 0.00 0.00 0.00 3.86
271 272 2.292267 GTAGCCACCACCATTCATCAG 58.708 52.381 0.00 0.00 0.00 2.90
272 273 1.632920 TGTAGCCACCACCATTCATCA 59.367 47.619 0.00 0.00 0.00 3.07
273 274 2.418368 TGTAGCCACCACCATTCATC 57.582 50.000 0.00 0.00 0.00 2.92
274 275 2.658285 CATGTAGCCACCACCATTCAT 58.342 47.619 0.00 0.00 0.00 2.57
275 276 1.954733 GCATGTAGCCACCACCATTCA 60.955 52.381 0.00 0.00 37.23 2.57
276 277 0.740737 GCATGTAGCCACCACCATTC 59.259 55.000 0.00 0.00 37.23 2.67
277 278 0.039472 TGCATGTAGCCACCACCATT 59.961 50.000 0.00 0.00 44.83 3.16
278 279 0.039472 TTGCATGTAGCCACCACCAT 59.961 50.000 0.00 0.00 44.83 3.55
279 280 0.608856 CTTGCATGTAGCCACCACCA 60.609 55.000 0.00 0.00 44.83 4.17
280 281 0.322456 TCTTGCATGTAGCCACCACC 60.322 55.000 0.00 0.00 44.83 4.61
281 282 1.470098 CTTCTTGCATGTAGCCACCAC 59.530 52.381 0.00 0.00 44.83 4.16
282 283 1.350684 TCTTCTTGCATGTAGCCACCA 59.649 47.619 0.00 0.00 44.83 4.17
283 284 2.012673 CTCTTCTTGCATGTAGCCACC 58.987 52.381 0.00 0.00 44.83 4.61
284 285 2.012673 CCTCTTCTTGCATGTAGCCAC 58.987 52.381 0.00 0.00 44.83 5.01
285 286 1.065199 CCCTCTTCTTGCATGTAGCCA 60.065 52.381 0.00 0.00 44.83 4.75
286 287 1.673168 CCCTCTTCTTGCATGTAGCC 58.327 55.000 0.00 0.00 44.83 3.93
287 288 1.020437 GCCCTCTTCTTGCATGTAGC 58.980 55.000 0.00 0.00 45.96 3.58
288 289 1.673168 GGCCCTCTTCTTGCATGTAG 58.327 55.000 0.00 0.00 0.00 2.74
289 290 0.255890 GGGCCCTCTTCTTGCATGTA 59.744 55.000 17.04 0.00 0.00 2.29
290 291 1.000396 GGGCCCTCTTCTTGCATGT 60.000 57.895 17.04 0.00 0.00 3.21
291 292 1.755783 GGGGCCCTCTTCTTGCATG 60.756 63.158 24.38 0.00 0.00 4.06
292 293 2.220786 CTGGGGCCCTCTTCTTGCAT 62.221 60.000 25.93 0.00 0.00 3.96
293 294 2.858476 TGGGGCCCTCTTCTTGCA 60.858 61.111 25.93 5.18 0.00 4.08
294 295 2.044551 CTGGGGCCCTCTTCTTGC 60.045 66.667 25.93 1.93 0.00 4.01
295 296 0.405585 TTTCTGGGGCCCTCTTCTTG 59.594 55.000 25.93 4.35 0.00 3.02
296 297 1.158007 TTTTCTGGGGCCCTCTTCTT 58.842 50.000 25.93 0.00 0.00 2.52
297 298 1.158007 TTTTTCTGGGGCCCTCTTCT 58.842 50.000 25.93 0.00 0.00 2.85
298 299 1.203063 AGTTTTTCTGGGGCCCTCTTC 60.203 52.381 25.93 5.04 0.00 2.87
299 300 0.860457 AGTTTTTCTGGGGCCCTCTT 59.140 50.000 25.93 0.00 0.00 2.85
300 301 0.113190 CAGTTTTTCTGGGGCCCTCT 59.887 55.000 25.93 7.62 40.23 3.69
301 302 0.112412 TCAGTTTTTCTGGGGCCCTC 59.888 55.000 25.93 12.89 43.76 4.30
302 303 0.560688 TTCAGTTTTTCTGGGGCCCT 59.439 50.000 25.93 0.00 43.76 5.19
303 304 0.969149 CTTCAGTTTTTCTGGGGCCC 59.031 55.000 18.17 18.17 43.76 5.80
304 305 0.969149 CCTTCAGTTTTTCTGGGGCC 59.031 55.000 0.00 0.00 43.76 5.80
305 306 1.889170 CTCCTTCAGTTTTTCTGGGGC 59.111 52.381 0.00 0.00 43.76 5.80
306 307 2.108250 TCCTCCTTCAGTTTTTCTGGGG 59.892 50.000 0.00 0.00 43.76 4.96
307 308 3.149981 GTCCTCCTTCAGTTTTTCTGGG 58.850 50.000 0.00 0.00 43.76 4.45
308 309 4.092116 AGTCCTCCTTCAGTTTTTCTGG 57.908 45.455 0.00 0.00 43.76 3.86
309 310 5.590259 TCAAAGTCCTCCTTCAGTTTTTCTG 59.410 40.000 0.00 0.00 44.85 3.02
310 311 5.590663 GTCAAAGTCCTCCTTCAGTTTTTCT 59.409 40.000 0.00 0.00 31.27 2.52
311 312 5.357032 TGTCAAAGTCCTCCTTCAGTTTTTC 59.643 40.000 0.00 0.00 31.27 2.29
312 313 5.125578 GTGTCAAAGTCCTCCTTCAGTTTTT 59.874 40.000 0.00 0.00 31.27 1.94
313 314 4.640647 GTGTCAAAGTCCTCCTTCAGTTTT 59.359 41.667 0.00 0.00 31.27 2.43
314 315 4.200092 GTGTCAAAGTCCTCCTTCAGTTT 58.800 43.478 0.00 0.00 31.27 2.66
315 316 3.433740 GGTGTCAAAGTCCTCCTTCAGTT 60.434 47.826 0.00 0.00 31.27 3.16
316 317 2.104963 GGTGTCAAAGTCCTCCTTCAGT 59.895 50.000 0.00 0.00 31.27 3.41
317 318 2.104792 TGGTGTCAAAGTCCTCCTTCAG 59.895 50.000 0.00 0.00 31.27 3.02
318 319 2.123589 TGGTGTCAAAGTCCTCCTTCA 58.876 47.619 0.00 0.00 31.27 3.02
319 320 2.930826 TGGTGTCAAAGTCCTCCTTC 57.069 50.000 0.00 0.00 31.27 3.46
320 321 2.224867 CCATGGTGTCAAAGTCCTCCTT 60.225 50.000 2.57 0.00 33.79 3.36
321 322 1.352352 CCATGGTGTCAAAGTCCTCCT 59.648 52.381 2.57 0.00 0.00 3.69
322 323 1.073923 ACCATGGTGTCAAAGTCCTCC 59.926 52.381 18.99 0.00 0.00 4.30
323 324 2.154462 CACCATGGTGTCAAAGTCCTC 58.846 52.381 32.94 0.00 40.91 3.71
324 325 1.774254 TCACCATGGTGTCAAAGTCCT 59.226 47.619 37.49 0.67 45.55 3.85
325 326 2.270352 TCACCATGGTGTCAAAGTCC 57.730 50.000 37.49 0.00 45.55 3.85
326 327 4.074970 AGAATCACCATGGTGTCAAAGTC 58.925 43.478 37.49 27.63 45.55 3.01
327 328 3.822735 CAGAATCACCATGGTGTCAAAGT 59.177 43.478 37.49 22.03 45.55 2.66
328 329 3.192001 CCAGAATCACCATGGTGTCAAAG 59.808 47.826 37.49 25.99 45.55 2.77
329 330 3.156293 CCAGAATCACCATGGTGTCAAA 58.844 45.455 37.49 23.07 45.55 2.69
330 331 2.108075 ACCAGAATCACCATGGTGTCAA 59.892 45.455 37.49 23.42 45.53 3.18
331 332 1.704628 ACCAGAATCACCATGGTGTCA 59.295 47.619 37.49 24.12 45.53 3.58
332 333 2.496899 ACCAGAATCACCATGGTGTC 57.503 50.000 37.49 29.52 45.53 3.67
333 334 2.354704 CGTACCAGAATCACCATGGTGT 60.355 50.000 37.49 24.06 46.64 4.16
334 335 2.279741 CGTACCAGAATCACCATGGTG 58.720 52.381 35.00 35.00 46.64 4.17
336 337 1.299541 GCGTACCAGAATCACCATGG 58.700 55.000 11.19 11.19 40.10 3.66
337 338 1.935873 CTGCGTACCAGAATCACCATG 59.064 52.381 5.67 0.00 44.64 3.66
338 339 1.134401 CCTGCGTACCAGAATCACCAT 60.134 52.381 11.58 0.00 44.64 3.55
339 340 0.249120 CCTGCGTACCAGAATCACCA 59.751 55.000 11.58 0.00 44.64 4.17
340 341 0.535335 TCCTGCGTACCAGAATCACC 59.465 55.000 11.58 0.00 44.64 4.02
341 342 1.471676 CCTCCTGCGTACCAGAATCAC 60.472 57.143 11.58 0.00 44.64 3.06
342 343 0.824109 CCTCCTGCGTACCAGAATCA 59.176 55.000 11.58 0.00 44.64 2.57
343 344 1.112113 TCCTCCTGCGTACCAGAATC 58.888 55.000 11.58 0.00 44.64 2.52
344 345 1.794714 ATCCTCCTGCGTACCAGAAT 58.205 50.000 11.58 0.40 44.64 2.40
345 346 2.447408 TATCCTCCTGCGTACCAGAA 57.553 50.000 11.58 0.00 44.64 3.02
346 347 2.239400 CATATCCTCCTGCGTACCAGA 58.761 52.381 11.58 0.45 44.64 3.86
347 348 1.273606 CCATATCCTCCTGCGTACCAG 59.726 57.143 4.81 4.81 41.41 4.00
348 349 1.133294 TCCATATCCTCCTGCGTACCA 60.133 52.381 0.00 0.00 0.00 3.25
349 350 1.629043 TCCATATCCTCCTGCGTACC 58.371 55.000 0.00 0.00 0.00 3.34
350 351 3.321111 TCTTTCCATATCCTCCTGCGTAC 59.679 47.826 0.00 0.00 0.00 3.67
351 352 3.572642 TCTTTCCATATCCTCCTGCGTA 58.427 45.455 0.00 0.00 0.00 4.42
352 353 2.366916 CTCTTTCCATATCCTCCTGCGT 59.633 50.000 0.00 0.00 0.00 5.24
353 354 2.630098 TCTCTTTCCATATCCTCCTGCG 59.370 50.000 0.00 0.00 0.00 5.18
354 355 3.007831 CCTCTCTTTCCATATCCTCCTGC 59.992 52.174 0.00 0.00 0.00 4.85
355 356 4.487804 TCCTCTCTTTCCATATCCTCCTG 58.512 47.826 0.00 0.00 0.00 3.86
356 357 4.841813 TCCTCTCTTTCCATATCCTCCT 57.158 45.455 0.00 0.00 0.00 3.69
357 358 5.896073 TTTCCTCTCTTTCCATATCCTCC 57.104 43.478 0.00 0.00 0.00 4.30
358 359 6.183361 ACCATTTCCTCTCTTTCCATATCCTC 60.183 42.308 0.00 0.00 0.00 3.71
359 360 5.674035 ACCATTTCCTCTCTTTCCATATCCT 59.326 40.000 0.00 0.00 0.00 3.24
360 361 5.946486 ACCATTTCCTCTCTTTCCATATCC 58.054 41.667 0.00 0.00 0.00 2.59
361 362 9.579932 AATAACCATTTCCTCTCTTTCCATATC 57.420 33.333 0.00 0.00 0.00 1.63
362 363 9.579932 GAATAACCATTTCCTCTCTTTCCATAT 57.420 33.333 0.00 0.00 0.00 1.78
363 364 8.781951 AGAATAACCATTTCCTCTCTTTCCATA 58.218 33.333 0.00 0.00 0.00 2.74
364 365 7.646884 AGAATAACCATTTCCTCTCTTTCCAT 58.353 34.615 0.00 0.00 0.00 3.41
365 366 7.032598 AGAATAACCATTTCCTCTCTTTCCA 57.967 36.000 0.00 0.00 0.00 3.53
366 367 7.946381 AAGAATAACCATTTCCTCTCTTTCC 57.054 36.000 0.00 0.00 0.00 3.13
368 369 9.467796 CCTTAAGAATAACCATTTCCTCTCTTT 57.532 33.333 3.36 0.00 0.00 2.52
369 370 8.836735 TCCTTAAGAATAACCATTTCCTCTCTT 58.163 33.333 3.36 0.00 0.00 2.85
370 371 8.393959 TCCTTAAGAATAACCATTTCCTCTCT 57.606 34.615 3.36 0.00 0.00 3.10
371 372 7.717436 CCTCCTTAAGAATAACCATTTCCTCTC 59.283 40.741 3.36 0.00 0.00 3.20
372 373 7.184753 ACCTCCTTAAGAATAACCATTTCCTCT 59.815 37.037 3.36 0.00 0.00 3.69
373 374 7.347252 ACCTCCTTAAGAATAACCATTTCCTC 58.653 38.462 3.36 0.00 0.00 3.71
374 375 7.285340 ACCTCCTTAAGAATAACCATTTCCT 57.715 36.000 3.36 0.00 0.00 3.36
375 376 7.614192 TCAACCTCCTTAAGAATAACCATTTCC 59.386 37.037 3.36 0.00 0.00 3.13
376 377 8.459635 GTCAACCTCCTTAAGAATAACCATTTC 58.540 37.037 3.36 0.00 0.00 2.17
377 378 8.170730 AGTCAACCTCCTTAAGAATAACCATTT 58.829 33.333 3.36 0.00 0.00 2.32
378 379 7.611855 CAGTCAACCTCCTTAAGAATAACCATT 59.388 37.037 3.36 0.00 0.00 3.16
379 380 7.112779 CAGTCAACCTCCTTAAGAATAACCAT 58.887 38.462 3.36 0.00 0.00 3.55
380 381 6.472887 CAGTCAACCTCCTTAAGAATAACCA 58.527 40.000 3.36 0.00 0.00 3.67
381 382 5.354513 GCAGTCAACCTCCTTAAGAATAACC 59.645 44.000 3.36 0.00 0.00 2.85
382 383 5.938125 TGCAGTCAACCTCCTTAAGAATAAC 59.062 40.000 3.36 0.00 0.00 1.89
383 384 6.121776 TGCAGTCAACCTCCTTAAGAATAA 57.878 37.500 3.36 0.00 0.00 1.40
430 431 1.733402 TTGAGGGCAACAGCAAACGG 61.733 55.000 0.00 0.00 39.74 4.44
439 440 2.206576 AGTTCCTGATTGAGGGCAAC 57.793 50.000 0.00 0.00 43.06 4.17
445 446 7.829211 TCCCTACATTTAAAGTTCCTGATTGAG 59.171 37.037 0.00 0.00 0.00 3.02
460 461 9.807921 AAAGAGAAATTCTTGTCCCTACATTTA 57.192 29.630 0.00 0.00 45.41 1.40
464 465 6.936900 CAGAAAGAGAAATTCTTGTCCCTACA 59.063 38.462 0.00 0.00 45.41 2.74
474 475 7.192852 TGAGGCTATCAGAAAGAGAAATTCT 57.807 36.000 0.00 0.00 37.62 2.40
475 476 7.041235 CCATGAGGCTATCAGAAAGAGAAATTC 60.041 40.741 0.00 0.00 42.53 2.17
482 483 4.471025 TCAACCATGAGGCTATCAGAAAGA 59.529 41.667 0.00 0.00 42.53 2.52
483 484 4.574013 GTCAACCATGAGGCTATCAGAAAG 59.426 45.833 0.00 0.00 42.53 2.62
484 485 4.225942 AGTCAACCATGAGGCTATCAGAAA 59.774 41.667 0.00 0.00 42.53 2.52
485 486 3.776969 AGTCAACCATGAGGCTATCAGAA 59.223 43.478 0.00 0.00 42.53 3.02
486 487 3.378512 AGTCAACCATGAGGCTATCAGA 58.621 45.455 0.00 0.00 42.53 3.27
487 488 3.726607 GAGTCAACCATGAGGCTATCAG 58.273 50.000 0.00 0.00 42.53 2.90
488 489 2.101415 CGAGTCAACCATGAGGCTATCA 59.899 50.000 0.00 0.00 43.70 2.15
489 490 2.748605 CGAGTCAACCATGAGGCTATC 58.251 52.381 0.00 0.00 39.06 2.08
490 491 1.202580 GCGAGTCAACCATGAGGCTAT 60.203 52.381 0.00 0.00 39.06 2.97
491 492 0.175760 GCGAGTCAACCATGAGGCTA 59.824 55.000 0.00 0.00 39.06 3.93
492 493 1.078848 GCGAGTCAACCATGAGGCT 60.079 57.895 0.00 0.00 39.06 4.58
493 494 0.674895 AAGCGAGTCAACCATGAGGC 60.675 55.000 0.00 0.00 39.06 4.70
494 495 1.813513 AAAGCGAGTCAACCATGAGG 58.186 50.000 0.00 0.00 35.88 3.86
495 496 3.250762 TGAAAAAGCGAGTCAACCATGAG 59.749 43.478 0.00 0.00 35.88 2.90
496 497 3.210227 TGAAAAAGCGAGTCAACCATGA 58.790 40.909 0.00 0.00 0.00 3.07
497 498 3.558505 CTGAAAAAGCGAGTCAACCATG 58.441 45.455 0.00 0.00 0.00 3.66
498 499 2.030805 GCTGAAAAAGCGAGTCAACCAT 60.031 45.455 0.00 0.00 43.45 3.55
499 500 1.333619 GCTGAAAAAGCGAGTCAACCA 59.666 47.619 0.00 0.00 43.45 3.67
500 501 2.037941 GCTGAAAAAGCGAGTCAACC 57.962 50.000 0.00 0.00 43.45 3.77
510 511 8.454106 ACTACTAGTAATTGCATGCTGAAAAAG 58.546 33.333 20.33 10.51 0.00 2.27
511 512 8.335532 ACTACTAGTAATTGCATGCTGAAAAA 57.664 30.769 20.33 4.37 0.00 1.94
512 513 7.921786 ACTACTAGTAATTGCATGCTGAAAA 57.078 32.000 20.33 4.79 0.00 2.29
513 514 9.261180 GATACTACTAGTAATTGCATGCTGAAA 57.739 33.333 20.33 5.20 33.89 2.69
514 515 8.642432 AGATACTACTAGTAATTGCATGCTGAA 58.358 33.333 20.33 6.03 33.89 3.02
515 516 8.183104 AGATACTACTAGTAATTGCATGCTGA 57.817 34.615 20.33 8.07 33.89 4.26
516 517 8.824159 AAGATACTACTAGTAATTGCATGCTG 57.176 34.615 20.33 1.67 33.89 4.41
517 518 9.482627 GAAAGATACTACTAGTAATTGCATGCT 57.517 33.333 20.33 0.40 33.89 3.79
518 519 9.482627 AGAAAGATACTACTAGTAATTGCATGC 57.517 33.333 11.82 11.82 33.89 4.06
528 529 9.969001 ACTTCTCTGAAGAAAGATACTACTAGT 57.031 33.333 13.42 0.00 40.95 2.57
532 533 9.997482 CAGTACTTCTCTGAAGAAAGATACTAC 57.003 37.037 13.42 4.10 40.95 2.73
534 535 7.672239 ACCAGTACTTCTCTGAAGAAAGATACT 59.328 37.037 13.42 7.68 40.95 2.12
535 536 7.832769 ACCAGTACTTCTCTGAAGAAAGATAC 58.167 38.462 13.42 5.85 40.95 2.24
536 537 8.307483 CAACCAGTACTTCTCTGAAGAAAGATA 58.693 37.037 13.42 0.00 40.95 1.98
537 538 6.926630 ACCAGTACTTCTCTGAAGAAAGAT 57.073 37.500 13.42 0.00 40.95 2.40
538 539 6.463049 CCAACCAGTACTTCTCTGAAGAAAGA 60.463 42.308 13.42 0.00 40.95 2.52
539 540 5.698545 CCAACCAGTACTTCTCTGAAGAAAG 59.301 44.000 13.42 0.91 40.95 2.62
554 555 0.618458 CTTAGGCCAGCCAACCAGTA 59.382 55.000 12.03 0.00 38.92 2.74
559 560 0.244721 CTTTGCTTAGGCCAGCCAAC 59.755 55.000 12.03 0.00 39.25 3.77
572 573 2.307098 AGTAGGATTCTGTGGCTTTGCT 59.693 45.455 0.00 0.00 0.00 3.91
573 574 2.716217 AGTAGGATTCTGTGGCTTTGC 58.284 47.619 0.00 0.00 0.00 3.68
574 575 4.080863 AGGTAGTAGGATTCTGTGGCTTTG 60.081 45.833 0.00 0.00 0.00 2.77
600 601 9.265901 CCAGTCAACCAGTATTTATATCTGAAG 57.734 37.037 0.00 0.00 0.00 3.02
601 602 7.715249 GCCAGTCAACCAGTATTTATATCTGAA 59.285 37.037 0.00 0.00 0.00 3.02
603 604 7.220030 AGCCAGTCAACCAGTATTTATATCTG 58.780 38.462 0.00 0.00 0.00 2.90
604 605 7.380423 AGCCAGTCAACCAGTATTTATATCT 57.620 36.000 0.00 0.00 0.00 1.98
605 606 8.989980 GTAAGCCAGTCAACCAGTATTTATATC 58.010 37.037 0.00 0.00 0.00 1.63
612 620 2.093658 CGGTAAGCCAGTCAACCAGTAT 60.094 50.000 0.00 0.00 34.09 2.12
631 639 1.021202 TTGTTGTTCTGTGGCTTCGG 58.979 50.000 0.00 0.00 0.00 4.30
632 640 1.268539 GGTTGTTGTTCTGTGGCTTCG 60.269 52.381 0.00 0.00 0.00 3.79
633 641 1.067060 GGGTTGTTGTTCTGTGGCTTC 59.933 52.381 0.00 0.00 0.00 3.86
634 642 1.111277 GGGTTGTTGTTCTGTGGCTT 58.889 50.000 0.00 0.00 0.00 4.35
635 643 0.755327 GGGGTTGTTGTTCTGTGGCT 60.755 55.000 0.00 0.00 0.00 4.75
636 644 1.739667 GGGGTTGTTGTTCTGTGGC 59.260 57.895 0.00 0.00 0.00 5.01
637 645 0.106217 AGGGGGTTGTTGTTCTGTGG 60.106 55.000 0.00 0.00 0.00 4.17
640 648 1.328279 GGAAGGGGGTTGTTGTTCTG 58.672 55.000 0.00 0.00 0.00 3.02
645 657 0.756294 GTTTGGGAAGGGGGTTGTTG 59.244 55.000 0.00 0.00 0.00 3.33
654 666 1.616994 GGATGTCTGGGTTTGGGAAGG 60.617 57.143 0.00 0.00 0.00 3.46
655 667 1.355720 AGGATGTCTGGGTTTGGGAAG 59.644 52.381 0.00 0.00 0.00 3.46
665 677 2.563261 CATGGATGGAGGATGTCTGG 57.437 55.000 0.00 0.00 0.00 3.86
698 710 1.130054 AAGCAGGAGCCAACAGGAGA 61.130 55.000 0.00 0.00 43.56 3.71
701 713 1.228367 ACAAGCAGGAGCCAACAGG 60.228 57.895 0.00 0.00 43.56 4.00
705 717 0.321919 CTAGCACAAGCAGGAGCCAA 60.322 55.000 0.00 0.00 45.49 4.52
706 718 1.297689 CTAGCACAAGCAGGAGCCA 59.702 57.895 0.00 0.00 45.49 4.75
707 719 2.111582 GCTAGCACAAGCAGGAGCC 61.112 63.158 10.63 0.00 45.49 4.70
708 720 2.111582 GGCTAGCACAAGCAGGAGC 61.112 63.158 18.24 0.00 44.64 4.70
711 723 2.042831 GGTGGCTAGCACAAGCAGG 61.043 63.158 18.24 0.00 44.64 4.85
714 726 2.042831 CCTGGTGGCTAGCACAAGC 61.043 63.158 18.24 11.43 41.99 4.01
715 727 4.308526 CCTGGTGGCTAGCACAAG 57.691 61.111 18.24 14.61 0.00 3.16
742 754 2.912987 TAGACAGAGGAGGAGGCGGC 62.913 65.000 0.00 0.00 0.00 6.53
743 755 0.178975 ATAGACAGAGGAGGAGGCGG 60.179 60.000 0.00 0.00 0.00 6.13
744 756 0.958091 CATAGACAGAGGAGGAGGCG 59.042 60.000 0.00 0.00 0.00 5.52
745 757 0.678950 GCATAGACAGAGGAGGAGGC 59.321 60.000 0.00 0.00 0.00 4.70
746 758 1.686052 GTGCATAGACAGAGGAGGAGG 59.314 57.143 0.00 0.00 0.00 4.30
747 759 2.382882 TGTGCATAGACAGAGGAGGAG 58.617 52.381 0.00 0.00 0.00 3.69
748 760 2.532250 TGTGCATAGACAGAGGAGGA 57.468 50.000 0.00 0.00 0.00 3.71
778 793 1.002888 CTCATCTGTGAAGCACCCACT 59.997 52.381 0.00 0.00 35.66 4.00
934 949 1.947456 GAAGAAACTGTTGCGGAGGTT 59.053 47.619 0.00 0.00 0.00 3.50
1092 1107 4.102367 AGAGAGCCCAAGAATCTTGGTATC 59.898 45.833 32.74 28.31 37.88 2.24
1244 1259 8.560374 CCTCAGCATGCAATATATTATCATCAG 58.440 37.037 21.98 0.00 34.76 2.90
1298 1313 2.854777 CTCATGTCGAGAAACCTTAGCG 59.145 50.000 0.00 0.00 45.45 4.26
1405 1420 6.620877 AGGTGTGTGTGGAAAGATAAGATA 57.379 37.500 0.00 0.00 0.00 1.98
1483 1498 3.222603 AGGTTGGATTCAAGGTGTCAAC 58.777 45.455 0.00 0.00 32.92 3.18
1596 1611 5.012768 TCCAAGTTTAAGTACCTCAAGGGAG 59.987 44.000 0.29 0.00 40.27 4.30
1662 1677 2.854963 AGCACTCTCAAATTGCACAGA 58.145 42.857 0.00 0.00 38.81 3.41
2024 2039 1.617947 GGGAGGAATCCAGTGCGAGT 61.618 60.000 0.61 0.00 0.00 4.18
2028 2043 3.366052 TTAAAGGGAGGAATCCAGTGC 57.634 47.619 0.61 0.00 0.00 4.40
2040 2055 2.041620 AGCCAGATGCAGTTTAAAGGGA 59.958 45.455 0.00 0.00 44.83 4.20
2073 2090 0.318762 ACTGAGGTCCAACTTCGCTC 59.681 55.000 0.00 0.00 0.00 5.03
2077 2094 3.493767 AGGAAACTGAGGTCCAACTTC 57.506 47.619 7.13 0.00 41.13 3.01
2117 2134 9.282247 CAGAAATGTCAAGATTAGTAATGTTGC 57.718 33.333 22.02 17.92 40.74 4.17
2169 2186 7.595819 TGAAAATACAGTCCAAAACCAATCT 57.404 32.000 0.00 0.00 0.00 2.40
2602 2630 1.123861 TCAACTCTGGGCAGCTCTGT 61.124 55.000 0.00 0.00 0.00 3.41
2639 2667 9.308000 TGGTAACTCTCCATCAAATTTGTTATT 57.692 29.630 17.47 5.56 37.61 1.40
2652 2680 5.455326 GCTATCCATGTTGGTAACTCTCCAT 60.455 44.000 0.00 0.00 39.03 3.41
2662 2690 3.737559 TTCTTGGCTATCCATGTTGGT 57.262 42.857 0.00 0.00 43.05 3.67
2665 2693 5.014808 GCAATTTCTTGGCTATCCATGTT 57.985 39.130 0.00 0.00 43.05 2.71
2677 2705 8.248945 AGATAAGACAAATCTGGCAATTTCTTG 58.751 33.333 13.56 6.38 34.48 3.02
2720 2748 7.657336 TCAATTGGAATAGAACCAGAAAACAC 58.343 34.615 5.42 0.00 38.70 3.32
2747 2775 2.699954 CAGGTATCCAAGGTGTGTGAC 58.300 52.381 0.00 0.00 0.00 3.67
2773 2801 3.942829 TCTGTTATCTGCAAGGTCCAAG 58.057 45.455 0.00 0.00 0.00 3.61
2774 2802 4.365514 TTCTGTTATCTGCAAGGTCCAA 57.634 40.909 0.00 0.00 0.00 3.53
2884 2912 0.521735 GGTTTGCTGGCCTTTCGTAG 59.478 55.000 3.32 0.00 0.00 3.51
2887 2915 1.903404 AGGGTTTGCTGGCCTTTCG 60.903 57.895 3.32 0.00 0.00 3.46
2912 2940 4.702831 TCATCATATTTTGCTCCAGCGTA 58.297 39.130 0.00 0.00 45.83 4.42
2916 2944 7.450124 AAGCTATCATCATATTTTGCTCCAG 57.550 36.000 0.00 0.00 0.00 3.86
2921 2949 9.823098 CACTTCTAAGCTATCATCATATTTTGC 57.177 33.333 0.00 0.00 0.00 3.68
2983 3011 8.455903 AGTCAAGACCAACCATATAAATGATG 57.544 34.615 0.00 0.00 34.84 3.07
3058 3086 7.684529 AGATGTTCAGGTTCTTCAGATTAACT 58.315 34.615 0.00 0.00 0.00 2.24
3118 3146 5.517924 TCCAATGATCCAAGAAAGCCAATA 58.482 37.500 0.00 0.00 0.00 1.90
3290 3318 3.266636 TGTTGCCGATGTACGATGAATT 58.733 40.909 0.00 0.00 45.77 2.17
3291 3319 2.899976 TGTTGCCGATGTACGATGAAT 58.100 42.857 0.00 0.00 45.77 2.57
3292 3320 2.371910 TGTTGCCGATGTACGATGAA 57.628 45.000 0.00 0.00 45.77 2.57
3390 3418 5.395324 CCAAGATAGAAAAACCTCGCCTCTA 60.395 44.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.