Multiple sequence alignment - TraesCS5B01G328000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G328000 chr5B 100.000 2972 0 0 1 2972 511601150 511604121 0.000000e+00 5489.0
1 TraesCS5B01G328000 chr5B 85.514 1001 117 22 1002 1992 511362025 511361043 0.000000e+00 1020.0
2 TraesCS5B01G328000 chr5B 100.000 29 0 0 2699 2727 580833532 580833504 1.000000e-03 54.7
3 TraesCS5B01G328000 chr5A 91.720 1727 92 29 777 2474 537248814 537250518 0.000000e+00 2350.0
4 TraesCS5B01G328000 chr5A 84.955 997 128 17 1002 1990 537118205 537117223 0.000000e+00 990.0
5 TraesCS5B01G328000 chr5A 94.017 234 9 3 2474 2707 537250934 537251162 1.700000e-92 350.0
6 TraesCS5B01G328000 chr5A 87.500 280 15 11 349 612 537248441 537248716 3.720000e-79 305.0
7 TraesCS5B01G328000 chr5A 82.143 224 25 9 2753 2972 537251275 537251487 8.470000e-41 178.0
8 TraesCS5B01G328000 chr5A 92.857 98 7 0 642 739 324692560 324692657 3.090000e-30 143.0
9 TraesCS5B01G328000 chr5A 89.286 112 9 3 626 737 639210462 639210570 1.440000e-28 137.0
10 TraesCS5B01G328000 chr5A 100.000 41 0 0 733 773 537248746 537248786 3.180000e-10 76.8
11 TraesCS5B01G328000 chr5D 95.526 1207 34 9 778 1982 423756557 423757745 0.000000e+00 1912.0
12 TraesCS5B01G328000 chr5D 84.955 997 128 17 1002 1990 423512882 423511900 0.000000e+00 990.0
13 TraesCS5B01G328000 chr5D 80.211 475 25 26 186 649 423756076 423756492 2.900000e-75 292.0
14 TraesCS5B01G328000 chr5D 95.652 92 3 1 647 737 383306885 383306976 2.390000e-31 147.0
15 TraesCS5B01G328000 chr5D 100.000 40 0 0 734 773 423756494 423756533 1.140000e-09 75.0
16 TraesCS5B01G328000 chr4D 94.792 96 5 0 645 740 47533272 47533177 1.850000e-32 150.0
17 TraesCS5B01G328000 chr2A 93.000 100 7 0 643 742 197673596 197673497 2.390000e-31 147.0
18 TraesCS5B01G328000 chr2A 100.000 31 0 0 1178 1208 49068506 49068476 1.150000e-04 58.4
19 TraesCS5B01G328000 chr4B 92.929 99 5 2 646 744 600126331 600126427 3.090000e-30 143.0
20 TraesCS5B01G328000 chr6B 91.346 104 8 1 643 745 639915416 639915313 1.110000e-29 141.0
21 TraesCS5B01G328000 chr6B 95.122 41 2 0 2701 2741 412149357 412149397 6.880000e-07 65.8
22 TraesCS5B01G328000 chr3D 92.079 101 6 2 635 735 138889966 138889868 1.110000e-29 141.0
23 TraesCS5B01G328000 chr7B 90.566 106 8 2 643 748 83911148 83911045 3.990000e-29 139.0
24 TraesCS5B01G328000 chr2D 91.667 48 3 1 37 84 643078073 643078027 6.880000e-07 65.8
25 TraesCS5B01G328000 chr2D 97.297 37 1 0 2705 2741 474182971 474182935 2.470000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G328000 chr5B 511601150 511604121 2971 False 5489.000000 5489 100.000000 1 2972 1 chr5B.!!$F1 2971
1 TraesCS5B01G328000 chr5B 511361043 511362025 982 True 1020.000000 1020 85.514000 1002 1992 1 chr5B.!!$R1 990
2 TraesCS5B01G328000 chr5A 537117223 537118205 982 True 990.000000 990 84.955000 1002 1990 1 chr5A.!!$R1 988
3 TraesCS5B01G328000 chr5A 537248441 537251487 3046 False 651.960000 2350 91.076000 349 2972 5 chr5A.!!$F3 2623
4 TraesCS5B01G328000 chr5D 423511900 423512882 982 True 990.000000 990 84.955000 1002 1990 1 chr5D.!!$R1 988
5 TraesCS5B01G328000 chr5D 423756076 423757745 1669 False 759.666667 1912 91.912333 186 1982 3 chr5D.!!$F2 1796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 790 0.107945 GAGCTAGCCAGGTCAACCAG 60.108 60.0 12.13 0.0 46.5 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2061 0.676782 AAATCTACCACACCCTGCGC 60.677 55.0 0.0 0.0 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.544246 AGTGCCGGCTCAATTTTAACC 59.456 47.619 29.70 0.00 0.00 2.85
22 23 0.892063 TGCCGGCTCAATTTTAACCC 59.108 50.000 29.70 0.00 0.00 4.11
23 24 1.182667 GCCGGCTCAATTTTAACCCT 58.817 50.000 22.15 0.00 0.00 4.34
24 25 1.548719 GCCGGCTCAATTTTAACCCTT 59.451 47.619 22.15 0.00 0.00 3.95
25 26 2.028476 GCCGGCTCAATTTTAACCCTTT 60.028 45.455 22.15 0.00 0.00 3.11
26 27 3.556213 GCCGGCTCAATTTTAACCCTTTT 60.556 43.478 22.15 0.00 0.00 2.27
27 28 4.637276 CCGGCTCAATTTTAACCCTTTTT 58.363 39.130 0.00 0.00 0.00 1.94
28 29 4.688879 CCGGCTCAATTTTAACCCTTTTTC 59.311 41.667 0.00 0.00 0.00 2.29
29 30 5.510690 CCGGCTCAATTTTAACCCTTTTTCT 60.511 40.000 0.00 0.00 0.00 2.52
30 31 6.294843 CCGGCTCAATTTTAACCCTTTTTCTA 60.295 38.462 0.00 0.00 0.00 2.10
31 32 7.320399 CGGCTCAATTTTAACCCTTTTTCTAT 58.680 34.615 0.00 0.00 0.00 1.98
32 33 7.817478 CGGCTCAATTTTAACCCTTTTTCTATT 59.183 33.333 0.00 0.00 0.00 1.73
41 42 6.894339 AACCCTTTTTCTATTAGTGTGTGG 57.106 37.500 0.00 0.00 0.00 4.17
42 43 4.765339 ACCCTTTTTCTATTAGTGTGTGGC 59.235 41.667 0.00 0.00 0.00 5.01
43 44 4.157840 CCCTTTTTCTATTAGTGTGTGGCC 59.842 45.833 0.00 0.00 0.00 5.36
44 45 5.010282 CCTTTTTCTATTAGTGTGTGGCCT 58.990 41.667 3.32 0.00 0.00 5.19
45 46 5.106157 CCTTTTTCTATTAGTGTGTGGCCTG 60.106 44.000 3.32 0.00 0.00 4.85
46 47 4.901197 TTTCTATTAGTGTGTGGCCTGA 57.099 40.909 3.32 0.00 0.00 3.86
47 48 4.471904 TTCTATTAGTGTGTGGCCTGAG 57.528 45.455 3.32 0.00 0.00 3.35
48 49 2.766263 TCTATTAGTGTGTGGCCTGAGG 59.234 50.000 3.32 0.00 0.00 3.86
49 50 1.362224 ATTAGTGTGTGGCCTGAGGT 58.638 50.000 3.32 0.00 0.00 3.85
50 51 1.136828 TTAGTGTGTGGCCTGAGGTT 58.863 50.000 3.32 0.00 0.00 3.50
51 52 0.396435 TAGTGTGTGGCCTGAGGTTG 59.604 55.000 3.32 0.00 0.00 3.77
52 53 2.203337 TGTGTGGCCTGAGGTTGC 60.203 61.111 3.32 0.00 0.00 4.17
60 61 3.399181 CTGAGGTTGCCGGGGCTA 61.399 66.667 11.55 0.00 42.51 3.93
61 62 2.690881 TGAGGTTGCCGGGGCTAT 60.691 61.111 11.55 0.00 42.51 2.97
62 63 2.270874 CTGAGGTTGCCGGGGCTATT 62.271 60.000 11.55 0.00 42.51 1.73
63 64 1.076995 GAGGTTGCCGGGGCTATTT 60.077 57.895 11.55 0.00 42.51 1.40
64 65 0.683179 GAGGTTGCCGGGGCTATTTT 60.683 55.000 11.55 0.00 42.51 1.82
65 66 0.252057 AGGTTGCCGGGGCTATTTTT 60.252 50.000 11.55 0.00 42.51 1.94
66 67 0.108377 GGTTGCCGGGGCTATTTTTG 60.108 55.000 11.55 0.00 42.51 2.44
67 68 0.606096 GTTGCCGGGGCTATTTTTGT 59.394 50.000 11.55 0.00 42.51 2.83
68 69 0.892063 TTGCCGGGGCTATTTTTGTC 59.108 50.000 11.55 0.00 42.51 3.18
69 70 0.968393 TGCCGGGGCTATTTTTGTCC 60.968 55.000 11.55 0.00 42.51 4.02
70 71 0.968393 GCCGGGGCTATTTTTGTCCA 60.968 55.000 2.18 0.00 38.26 4.02
71 72 1.551452 CCGGGGCTATTTTTGTCCAA 58.449 50.000 0.00 0.00 0.00 3.53
72 73 1.896465 CCGGGGCTATTTTTGTCCAAA 59.104 47.619 0.00 0.00 0.00 3.28
73 74 2.300437 CCGGGGCTATTTTTGTCCAAAA 59.700 45.455 0.00 1.18 38.76 2.44
74 75 3.322369 CGGGGCTATTTTTGTCCAAAAC 58.678 45.455 4.75 0.00 39.70 2.43
75 76 3.670625 GGGGCTATTTTTGTCCAAAACC 58.329 45.455 4.75 3.62 39.70 3.27
76 77 3.322369 GGGCTATTTTTGTCCAAAACCG 58.678 45.455 4.75 0.00 39.70 4.44
77 78 3.322369 GGCTATTTTTGTCCAAAACCGG 58.678 45.455 0.00 0.00 39.70 5.28
78 79 2.734606 GCTATTTTTGTCCAAAACCGGC 59.265 45.455 0.00 6.03 39.70 6.13
79 80 1.859383 ATTTTTGTCCAAAACCGGCG 58.141 45.000 0.00 0.00 39.70 6.46
80 81 0.815734 TTTTTGTCCAAAACCGGCGA 59.184 45.000 9.30 0.00 39.70 5.54
81 82 0.815734 TTTTGTCCAAAACCGGCGAA 59.184 45.000 9.30 0.00 35.57 4.70
82 83 0.815734 TTTGTCCAAAACCGGCGAAA 59.184 45.000 9.30 0.00 0.00 3.46
83 84 0.815734 TTGTCCAAAACCGGCGAAAA 59.184 45.000 9.30 0.00 0.00 2.29
84 85 0.815734 TGTCCAAAACCGGCGAAAAA 59.184 45.000 9.30 0.00 0.00 1.94
85 86 1.202313 TGTCCAAAACCGGCGAAAAAG 60.202 47.619 9.30 0.00 0.00 2.27
86 87 0.386113 TCCAAAACCGGCGAAAAAGG 59.614 50.000 9.30 4.75 0.00 3.11
87 88 0.386113 CCAAAACCGGCGAAAAAGGA 59.614 50.000 9.30 0.00 0.00 3.36
88 89 1.202428 CCAAAACCGGCGAAAAAGGAA 60.202 47.619 9.30 0.00 0.00 3.36
89 90 2.124122 CAAAACCGGCGAAAAAGGAAG 58.876 47.619 9.30 0.00 0.00 3.46
90 91 1.395635 AAACCGGCGAAAAAGGAAGT 58.604 45.000 9.30 0.00 0.00 3.01
91 92 0.949397 AACCGGCGAAAAAGGAAGTC 59.051 50.000 9.30 0.00 0.00 3.01
92 93 0.108019 ACCGGCGAAAAAGGAAGTCT 59.892 50.000 9.30 0.00 0.00 3.24
93 94 1.235724 CCGGCGAAAAAGGAAGTCTT 58.764 50.000 9.30 0.00 37.28 3.01
94 95 1.069227 CCGGCGAAAAAGGAAGTCTTG 60.069 52.381 9.30 0.00 35.55 3.02
95 96 1.069227 CGGCGAAAAAGGAAGTCTTGG 60.069 52.381 0.00 0.00 35.55 3.61
96 97 2.227194 GGCGAAAAAGGAAGTCTTGGA 58.773 47.619 0.00 0.00 35.55 3.53
97 98 2.820197 GGCGAAAAAGGAAGTCTTGGAT 59.180 45.455 0.00 0.00 35.55 3.41
98 99 3.366374 GGCGAAAAAGGAAGTCTTGGATG 60.366 47.826 0.00 0.00 35.55 3.51
99 100 3.826466 CGAAAAAGGAAGTCTTGGATGC 58.174 45.455 0.00 0.00 35.55 3.91
100 101 3.253188 CGAAAAAGGAAGTCTTGGATGCA 59.747 43.478 0.00 0.00 35.55 3.96
101 102 4.082571 CGAAAAAGGAAGTCTTGGATGCAT 60.083 41.667 0.00 0.00 35.55 3.96
102 103 4.796038 AAAAGGAAGTCTTGGATGCATG 57.204 40.909 2.46 0.00 35.55 4.06
103 104 2.431954 AGGAAGTCTTGGATGCATGG 57.568 50.000 2.46 0.00 0.00 3.66
104 105 0.743097 GGAAGTCTTGGATGCATGGC 59.257 55.000 2.46 0.00 0.00 4.40
105 106 1.684248 GGAAGTCTTGGATGCATGGCT 60.684 52.381 2.46 1.13 0.00 4.75
106 107 1.674962 GAAGTCTTGGATGCATGGCTC 59.325 52.381 2.46 0.00 0.00 4.70
107 108 0.463295 AGTCTTGGATGCATGGCTCG 60.463 55.000 2.46 0.00 0.00 5.03
108 109 1.153107 TCTTGGATGCATGGCTCGG 60.153 57.895 2.46 0.00 0.00 4.63
109 110 2.124193 TTGGATGCATGGCTCGGG 60.124 61.111 2.46 0.00 0.00 5.14
110 111 4.881440 TGGATGCATGGCTCGGGC 62.881 66.667 2.46 0.00 37.82 6.13
112 113 4.916293 GATGCATGGCTCGGGCGA 62.916 66.667 2.46 0.00 39.81 5.54
113 114 4.260609 ATGCATGGCTCGGGCGAT 62.261 61.111 0.00 0.00 39.81 4.58
114 115 3.779850 ATGCATGGCTCGGGCGATT 62.780 57.895 0.34 0.00 39.81 3.34
115 116 3.211963 GCATGGCTCGGGCGATTT 61.212 61.111 0.34 0.00 39.81 2.17
116 117 2.774799 GCATGGCTCGGGCGATTTT 61.775 57.895 0.34 0.00 39.81 1.82
117 118 1.809207 CATGGCTCGGGCGATTTTT 59.191 52.632 0.34 0.00 39.81 1.94
152 153 3.451402 AAAAATGGTCCTAGGGTGGTC 57.549 47.619 9.46 0.00 0.00 4.02
153 154 0.909623 AAATGGTCCTAGGGTGGTCG 59.090 55.000 9.46 0.00 0.00 4.79
154 155 0.981277 AATGGTCCTAGGGTGGTCGG 60.981 60.000 9.46 0.00 0.00 4.79
155 156 2.762875 GGTCCTAGGGTGGTCGGG 60.763 72.222 9.46 0.00 0.00 5.14
156 157 3.468140 GTCCTAGGGTGGTCGGGC 61.468 72.222 9.46 0.00 0.00 6.13
157 158 4.791069 TCCTAGGGTGGTCGGGCC 62.791 72.222 9.46 0.00 37.90 5.80
158 159 4.798682 CCTAGGGTGGTCGGGCCT 62.799 72.222 0.84 0.00 38.35 5.19
159 160 2.687566 CTAGGGTGGTCGGGCCTT 60.688 66.667 0.84 0.00 38.35 4.35
160 161 2.686106 TAGGGTGGTCGGGCCTTC 60.686 66.667 0.84 0.00 38.35 3.46
161 162 3.549433 TAGGGTGGTCGGGCCTTCA 62.549 63.158 0.84 0.00 38.35 3.02
162 163 2.833151 TAGGGTGGTCGGGCCTTCAT 62.833 60.000 0.84 0.00 38.35 2.57
163 164 2.124695 GGTGGTCGGGCCTTCATC 60.125 66.667 0.84 0.00 38.35 2.92
164 165 2.668632 GTGGTCGGGCCTTCATCA 59.331 61.111 0.84 0.00 38.35 3.07
165 166 1.224592 GTGGTCGGGCCTTCATCAT 59.775 57.895 0.84 0.00 38.35 2.45
166 167 0.815615 GTGGTCGGGCCTTCATCATC 60.816 60.000 0.84 0.00 38.35 2.92
167 168 1.271127 TGGTCGGGCCTTCATCATCA 61.271 55.000 0.84 0.00 38.35 3.07
168 169 0.109342 GGTCGGGCCTTCATCATCAT 59.891 55.000 0.84 0.00 0.00 2.45
169 170 1.477558 GGTCGGGCCTTCATCATCATT 60.478 52.381 0.84 0.00 0.00 2.57
170 171 2.224523 GGTCGGGCCTTCATCATCATTA 60.225 50.000 0.84 0.00 0.00 1.90
171 172 3.476552 GTCGGGCCTTCATCATCATTAA 58.523 45.455 0.84 0.00 0.00 1.40
172 173 3.882888 GTCGGGCCTTCATCATCATTAAA 59.117 43.478 0.84 0.00 0.00 1.52
173 174 4.338118 GTCGGGCCTTCATCATCATTAAAA 59.662 41.667 0.84 0.00 0.00 1.52
174 175 4.952957 TCGGGCCTTCATCATCATTAAAAA 59.047 37.500 0.84 0.00 0.00 1.94
198 199 5.194473 ACAGCTATATATCCCTCGAAGGA 57.806 43.478 4.95 4.95 37.67 3.36
203 204 5.395435 GCTATATATCCCTCGAAGGAAACCC 60.395 48.000 6.90 0.00 40.04 4.11
273 274 3.676646 GCATCTGCAAAAAGAATGGTGTC 59.323 43.478 0.00 0.00 41.59 3.67
279 280 0.178975 AAAAGAATGGTGTCCGGCCA 60.179 50.000 2.24 0.00 40.68 5.36
284 285 2.556840 AATGGTGTCCGGCCATCCTG 62.557 60.000 11.95 0.00 45.21 3.86
309 310 4.950479 GCCAGTAGCACAGCATCT 57.050 55.556 0.00 0.00 42.97 2.90
311 312 1.576356 GCCAGTAGCACAGCATCTAC 58.424 55.000 0.00 0.00 42.97 2.59
312 313 1.137872 GCCAGTAGCACAGCATCTACT 59.862 52.381 0.00 0.00 44.43 2.57
313 314 2.801342 GCCAGTAGCACAGCATCTACTC 60.801 54.545 0.00 0.00 42.42 2.59
340 341 1.153823 CGCCGGTCAGACCAACTAG 60.154 63.158 20.13 2.43 38.47 2.57
341 342 1.874345 CGCCGGTCAGACCAACTAGT 61.874 60.000 20.13 0.00 38.47 2.57
342 343 0.389948 GCCGGTCAGACCAACTAGTG 60.390 60.000 20.13 0.95 38.47 2.74
344 345 1.825474 CCGGTCAGACCAACTAGTGAT 59.175 52.381 20.13 0.00 38.47 3.06
345 346 2.159226 CCGGTCAGACCAACTAGTGATC 60.159 54.545 20.13 0.00 38.47 2.92
346 347 2.755655 CGGTCAGACCAACTAGTGATCT 59.244 50.000 20.13 0.00 38.47 2.75
347 348 3.181495 CGGTCAGACCAACTAGTGATCTC 60.181 52.174 20.13 0.00 38.47 2.75
430 435 8.306038 TCCATCTAACAAAAAGAAATCATGTGG 58.694 33.333 0.00 0.00 0.00 4.17
431 436 7.063780 CCATCTAACAAAAAGAAATCATGTGGC 59.936 37.037 0.00 0.00 0.00 5.01
432 437 7.288810 TCTAACAAAAAGAAATCATGTGGCT 57.711 32.000 0.00 0.00 0.00 4.75
434 439 4.886579 ACAAAAAGAAATCATGTGGCTCC 58.113 39.130 0.00 0.00 0.00 4.70
436 441 5.166398 CAAAAAGAAATCATGTGGCTCCTC 58.834 41.667 0.00 0.00 0.00 3.71
453 458 5.780793 GGCTCCTCCTCCTACTATGAAATTA 59.219 44.000 0.00 0.00 0.00 1.40
454 459 6.442244 GGCTCCTCCTCCTACTATGAAATTAT 59.558 42.308 0.00 0.00 0.00 1.28
497 502 0.611618 TTTGCCATGTGGGTGCTAGG 60.612 55.000 0.54 0.00 39.65 3.02
498 503 2.830370 GCCATGTGGGTGCTAGGC 60.830 66.667 0.54 0.00 39.65 3.93
499 504 3.001514 CCATGTGGGTGCTAGGCT 58.998 61.111 0.00 0.00 0.00 4.58
500 505 1.983119 GCCATGTGGGTGCTAGGCTA 61.983 60.000 0.54 0.00 39.02 3.93
510 515 2.544069 GGTGCTAGGCTAAGCTCTAACG 60.544 54.545 14.23 0.00 43.19 3.18
533 538 5.533482 GAAGTCGATCAACAGCCATATACT 58.467 41.667 0.00 0.00 0.00 2.12
534 539 5.127693 AGTCGATCAACAGCCATATACTC 57.872 43.478 0.00 0.00 0.00 2.59
535 540 4.021894 AGTCGATCAACAGCCATATACTCC 60.022 45.833 0.00 0.00 0.00 3.85
536 541 3.057526 TCGATCAACAGCCATATACTCCG 60.058 47.826 0.00 0.00 0.00 4.63
537 542 3.057526 CGATCAACAGCCATATACTCCGA 60.058 47.826 0.00 0.00 0.00 4.55
538 543 4.489810 GATCAACAGCCATATACTCCGAG 58.510 47.826 0.00 0.00 0.00 4.63
539 544 2.628178 TCAACAGCCATATACTCCGAGG 59.372 50.000 0.00 0.00 0.00 4.63
540 545 2.365617 CAACAGCCATATACTCCGAGGT 59.634 50.000 0.00 0.00 0.00 3.85
541 546 3.520691 ACAGCCATATACTCCGAGGTA 57.479 47.619 0.00 0.00 0.00 3.08
542 547 3.155501 ACAGCCATATACTCCGAGGTAC 58.844 50.000 0.00 0.00 0.00 3.34
543 548 3.154710 CAGCCATATACTCCGAGGTACA 58.845 50.000 0.00 0.00 0.00 2.90
551 567 1.297664 CTCCGAGGTACAGTAGGACG 58.702 60.000 0.00 0.00 0.00 4.79
556 572 2.709213 GAGGTACAGTAGGACGTGTCT 58.291 52.381 0.00 0.00 0.00 3.41
639 655 1.726892 GCGATCACAACGACGTACTCA 60.727 52.381 0.00 0.00 0.00 3.41
643 659 4.493708 CGATCACAACGACGTACTCAGTAT 60.494 45.833 0.00 0.00 0.00 2.12
644 660 5.276536 CGATCACAACGACGTACTCAGTATA 60.277 44.000 0.00 0.00 0.00 1.47
645 661 6.563567 CGATCACAACGACGTACTCAGTATAT 60.564 42.308 0.00 0.00 0.00 0.86
646 662 7.358683 CGATCACAACGACGTACTCAGTATATA 60.359 40.741 0.00 0.00 0.00 0.86
647 663 7.719778 TCACAACGACGTACTCAGTATATAT 57.280 36.000 0.00 0.00 0.00 0.86
654 670 9.743057 ACGACGTACTCAGTATATATATACTCC 57.257 37.037 26.01 13.89 45.16 3.85
655 671 9.190858 CGACGTACTCAGTATATATATACTCCC 57.809 40.741 26.01 14.14 45.16 4.30
674 690 9.710818 ATACTCCCTCTGTAAACTAACATAAGA 57.289 33.333 0.00 0.00 0.00 2.10
675 691 8.068892 ACTCCCTCTGTAAACTAACATAAGAG 57.931 38.462 0.00 0.00 0.00 2.85
676 692 6.875076 TCCCTCTGTAAACTAACATAAGAGC 58.125 40.000 0.00 0.00 0.00 4.09
677 693 5.749109 CCCTCTGTAAACTAACATAAGAGCG 59.251 44.000 0.00 0.00 0.00 5.03
678 694 6.331061 CCTCTGTAAACTAACATAAGAGCGT 58.669 40.000 0.00 0.00 0.00 5.07
679 695 6.812160 CCTCTGTAAACTAACATAAGAGCGTT 59.188 38.462 0.00 0.00 0.00 4.84
680 696 7.331193 CCTCTGTAAACTAACATAAGAGCGTTT 59.669 37.037 0.00 0.00 0.00 3.60
681 697 9.350357 CTCTGTAAACTAACATAAGAGCGTTTA 57.650 33.333 0.00 0.00 0.00 2.01
682 698 9.695526 TCTGTAAACTAACATAAGAGCGTTTAA 57.304 29.630 0.00 0.00 31.24 1.52
728 744 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
729 745 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
730 746 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
731 747 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
773 789 1.983224 GAGCTAGCCAGGTCAACCA 59.017 57.895 12.13 0.00 46.50 3.67
774 790 0.107945 GAGCTAGCCAGGTCAACCAG 60.108 60.000 12.13 0.00 46.50 4.00
775 791 0.545309 AGCTAGCCAGGTCAACCAGA 60.545 55.000 12.13 0.00 38.89 3.86
795 835 1.298788 GTCCGGCCAACAAACAACG 60.299 57.895 2.24 0.00 0.00 4.10
818 858 1.076632 TCGCTTCCTCCTCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
819 859 2.131067 CGCTTCCTCCTCCTCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
820 860 1.313129 GCTTCCTCCTCCTCCTCCT 59.687 63.158 0.00 0.00 0.00 3.69
821 861 0.558712 GCTTCCTCCTCCTCCTCCTA 59.441 60.000 0.00 0.00 0.00 2.94
896 938 7.841956 ACCATATATATCTCCACAGCTTGTAC 58.158 38.462 0.00 0.00 0.00 2.90
909 951 1.337821 CTTGTACCTCGTCGTCAAGC 58.662 55.000 0.00 0.00 31.19 4.01
910 952 0.956633 TTGTACCTCGTCGTCAAGCT 59.043 50.000 0.00 0.00 0.00 3.74
912 954 1.736126 TGTACCTCGTCGTCAAGCTAG 59.264 52.381 0.00 0.00 0.00 3.42
929 974 2.709125 TAGTGCACCGGTGACACAGC 62.709 60.000 38.96 26.71 38.85 4.40
960 1005 2.355363 CGACGAACGCCAAGGTCA 60.355 61.111 0.00 0.00 35.97 4.02
961 1006 2.372690 CGACGAACGCCAAGGTCAG 61.373 63.158 0.00 0.00 35.97 3.51
962 1007 1.006571 GACGAACGCCAAGGTCAGA 60.007 57.895 0.00 0.00 35.97 3.27
963 1008 1.006102 ACGAACGCCAAGGTCAGAG 60.006 57.895 0.00 0.00 35.97 3.35
964 1009 2.383527 CGAACGCCAAGGTCAGAGC 61.384 63.158 0.00 0.00 35.97 4.09
965 1010 1.004440 GAACGCCAAGGTCAGAGCT 60.004 57.895 0.00 0.00 36.33 4.09
967 1012 0.247736 AACGCCAAGGTCAGAGCTAG 59.752 55.000 1.60 0.00 0.00 3.42
968 1013 1.520342 CGCCAAGGTCAGAGCTAGC 60.520 63.158 6.62 6.62 0.00 3.42
969 1014 1.904032 GCCAAGGTCAGAGCTAGCT 59.096 57.895 19.45 19.45 0.00 3.32
1566 1619 3.237741 ATAGCCGAGCTGCTCCCC 61.238 66.667 22.97 14.00 41.68 4.81
2022 2076 2.434884 CTGCGCAGGGTGTGGTAG 60.435 66.667 29.88 0.00 0.00 3.18
2029 2083 2.633488 GCAGGGTGTGGTAGATTTCTC 58.367 52.381 0.00 0.00 0.00 2.87
2067 2121 1.737029 CGTCCATCTGAACGTGATGCT 60.737 52.381 8.47 0.00 39.76 3.79
2102 2158 9.110502 TGTATGTTCTTGTTTGTGTGTACATAA 57.889 29.630 0.00 0.00 36.53 1.90
2108 2164 8.445275 TCTTGTTTGTGTGTACATAATGAAGT 57.555 30.769 0.00 0.00 36.53 3.01
2110 2166 6.964908 TGTTTGTGTGTACATAATGAAGTGG 58.035 36.000 0.00 0.00 36.53 4.00
2130 2186 3.187700 GGTGATGAACTATGTGTCGACC 58.812 50.000 14.12 5.06 0.00 4.79
2168 2228 7.257722 ACAAAATTATATTTCAACCTGCCTCG 58.742 34.615 0.00 0.00 0.00 4.63
2172 2232 0.883833 ATTTCAACCTGCCTCGCAAG 59.116 50.000 0.00 0.00 38.41 4.01
2198 2258 2.283298 AGATACATTGGCAAGTCGCAG 58.717 47.619 5.96 0.00 45.17 5.18
2199 2259 1.331756 GATACATTGGCAAGTCGCAGG 59.668 52.381 5.96 0.00 45.17 4.85
2222 2282 7.385752 CAGGTGCACTAAAAATCAAATGAATGT 59.614 33.333 17.98 0.00 0.00 2.71
2224 2284 7.148590 GGTGCACTAAAAATCAAATGAATGTCC 60.149 37.037 17.98 0.00 0.00 4.02
2261 2321 1.063806 CTGCTCAACGTGCTACAGTC 58.936 55.000 0.00 0.00 0.00 3.51
2268 2328 4.520179 TCAACGTGCTACAGTCTATAGGA 58.480 43.478 0.00 0.00 0.00 2.94
2270 2330 5.066117 TCAACGTGCTACAGTCTATAGGAAG 59.934 44.000 0.00 0.00 0.00 3.46
2271 2331 3.315749 ACGTGCTACAGTCTATAGGAAGC 59.684 47.826 0.00 3.35 0.00 3.86
2272 2332 3.315470 CGTGCTACAGTCTATAGGAAGCA 59.685 47.826 0.00 5.75 33.34 3.91
2277 2337 6.071672 TGCTACAGTCTATAGGAAGCATCATC 60.072 42.308 0.00 0.00 31.53 2.92
2282 2342 8.748412 ACAGTCTATAGGAAGCATCATCTAATC 58.252 37.037 0.00 0.00 0.00 1.75
2305 2365 8.585471 ATCTGAAGATTGTGGTATTTGATTGT 57.415 30.769 0.00 0.00 0.00 2.71
2306 2366 8.044060 TCTGAAGATTGTGGTATTTGATTGTC 57.956 34.615 0.00 0.00 0.00 3.18
2307 2367 7.665145 TCTGAAGATTGTGGTATTTGATTGTCA 59.335 33.333 0.00 0.00 0.00 3.58
2308 2368 8.175925 TGAAGATTGTGGTATTTGATTGTCAA 57.824 30.769 0.00 0.00 34.03 3.18
2309 2369 8.081633 TGAAGATTGTGGTATTTGATTGTCAAC 58.918 33.333 0.00 0.00 35.89 3.18
2310 2370 7.523293 AGATTGTGGTATTTGATTGTCAACA 57.477 32.000 0.00 0.00 35.89 3.33
2311 2371 8.125978 AGATTGTGGTATTTGATTGTCAACAT 57.874 30.769 0.00 0.00 35.89 2.71
2334 2401 9.502145 ACATATTCAACATACAAAAGCAATACG 57.498 29.630 0.00 0.00 0.00 3.06
2398 2465 7.727578 TGAGAATATGTTAGTACAAGTGGGA 57.272 36.000 0.00 0.00 37.91 4.37
2406 2473 8.983702 ATGTTAGTACAAGTGGGAAAGTTAAA 57.016 30.769 0.00 0.00 37.91 1.52
2407 2474 8.804912 TGTTAGTACAAGTGGGAAAGTTAAAA 57.195 30.769 0.00 0.00 0.00 1.52
2408 2475 8.895737 TGTTAGTACAAGTGGGAAAGTTAAAAG 58.104 33.333 0.00 0.00 0.00 2.27
2409 2476 9.112725 GTTAGTACAAGTGGGAAAGTTAAAAGA 57.887 33.333 0.00 0.00 0.00 2.52
2414 2481 8.771920 ACAAGTGGGAAAGTTAAAAGAAAAAG 57.228 30.769 0.00 0.00 0.00 2.27
2416 2483 9.430623 CAAGTGGGAAAGTTAAAAGAAAAAGAA 57.569 29.630 0.00 0.00 0.00 2.52
2436 2503 3.951563 AGCATTAGGCCACCATTAGAA 57.048 42.857 5.01 0.00 46.50 2.10
2491 2974 2.287608 GGGCAAGATAAAATACGCCAGC 60.288 50.000 0.00 0.00 41.41 4.85
2519 3002 4.764823 TGACCTACACAAATCCATTGAACC 59.235 41.667 0.00 0.00 41.85 3.62
2544 3027 7.411157 CCGTAAAAATTGTCGTAGAACAGGTAG 60.411 40.741 0.00 0.00 39.69 3.18
2545 3028 5.857822 AAAATTGTCGTAGAACAGGTAGC 57.142 39.130 0.00 0.00 39.69 3.58
2566 3049 1.831736 GCAGAGTAGGGGCAGAAGTAA 59.168 52.381 0.00 0.00 0.00 2.24
2567 3050 2.236395 GCAGAGTAGGGGCAGAAGTAAA 59.764 50.000 0.00 0.00 0.00 2.01
2611 3094 4.281657 AGGGATGGATTTCAAAAGGCTAC 58.718 43.478 0.00 0.00 0.00 3.58
2632 3115 7.309194 GGCTACAATAAAATTGGTTGACACTCT 60.309 37.037 4.78 0.00 0.00 3.24
2633 3116 7.750903 GCTACAATAAAATTGGTTGACACTCTC 59.249 37.037 4.78 0.00 0.00 3.20
2642 3125 2.139118 GTTGACACTCTCAAGTCTGCC 58.861 52.381 0.00 0.00 39.69 4.85
2661 3144 5.126869 TCTGCCATCAACAAAGAGAAACAAA 59.873 36.000 0.00 0.00 0.00 2.83
2717 3200 8.350852 AGTTGAAGTATAATATACTCCCTCCG 57.649 38.462 12.80 0.00 0.00 4.63
2718 3201 7.949006 AGTTGAAGTATAATATACTCCCTCCGT 59.051 37.037 12.80 0.00 0.00 4.69
2721 3204 5.764432 AGTATAATATACTCCCTCCGTCCC 58.236 45.833 7.10 0.00 0.00 4.46
2722 3205 1.920610 AATATACTCCCTCCGTCCCG 58.079 55.000 0.00 0.00 0.00 5.14
2723 3206 1.070604 ATATACTCCCTCCGTCCCGA 58.929 55.000 0.00 0.00 0.00 5.14
2724 3207 0.846015 TATACTCCCTCCGTCCCGAA 59.154 55.000 0.00 0.00 0.00 4.30
2725 3208 0.032813 ATACTCCCTCCGTCCCGAAA 60.033 55.000 0.00 0.00 0.00 3.46
2726 3209 0.032813 TACTCCCTCCGTCCCGAAAT 60.033 55.000 0.00 0.00 0.00 2.17
2727 3210 1.144057 CTCCCTCCGTCCCGAAATG 59.856 63.158 0.00 0.00 0.00 2.32
2728 3211 1.611261 TCCCTCCGTCCCGAAATGT 60.611 57.895 0.00 0.00 0.00 2.71
2729 3212 0.324552 TCCCTCCGTCCCGAAATGTA 60.325 55.000 0.00 0.00 0.00 2.29
2730 3213 0.538118 CCCTCCGTCCCGAAATGTAA 59.462 55.000 0.00 0.00 0.00 2.41
2731 3214 1.472728 CCCTCCGTCCCGAAATGTAAG 60.473 57.143 0.00 0.00 0.00 2.34
2732 3215 1.479323 CCTCCGTCCCGAAATGTAAGA 59.521 52.381 0.00 0.00 0.00 2.10
2733 3216 2.093869 CCTCCGTCCCGAAATGTAAGAA 60.094 50.000 0.00 0.00 0.00 2.52
2735 3218 2.564062 TCCGTCCCGAAATGTAAGAAGT 59.436 45.455 0.00 0.00 0.00 3.01
2737 3220 3.749609 CCGTCCCGAAATGTAAGAAGTTT 59.250 43.478 0.00 0.00 0.00 2.66
2738 3221 4.214758 CCGTCCCGAAATGTAAGAAGTTTT 59.785 41.667 0.00 0.00 0.00 2.43
2739 3222 5.278120 CCGTCCCGAAATGTAAGAAGTTTTT 60.278 40.000 0.00 0.00 0.00 1.94
2797 3346 1.139989 CGTTGTCTTGCTGTCGATGT 58.860 50.000 0.00 0.00 0.00 3.06
2798 3347 2.030628 TCGTTGTCTTGCTGTCGATGTA 60.031 45.455 0.00 0.00 0.00 2.29
2799 3348 2.090658 CGTTGTCTTGCTGTCGATGTAC 59.909 50.000 0.00 0.00 0.00 2.90
2800 3349 2.363788 TGTCTTGCTGTCGATGTACC 57.636 50.000 0.00 0.00 0.00 3.34
2801 3350 1.893137 TGTCTTGCTGTCGATGTACCT 59.107 47.619 0.00 0.00 0.00 3.08
2802 3351 3.086282 TGTCTTGCTGTCGATGTACCTA 58.914 45.455 0.00 0.00 0.00 3.08
2803 3352 3.128764 TGTCTTGCTGTCGATGTACCTAG 59.871 47.826 0.00 0.00 0.00 3.02
2804 3353 3.377485 GTCTTGCTGTCGATGTACCTAGA 59.623 47.826 0.00 0.00 0.00 2.43
2805 3354 4.014406 TCTTGCTGTCGATGTACCTAGAA 58.986 43.478 0.00 0.00 0.00 2.10
2806 3355 4.461431 TCTTGCTGTCGATGTACCTAGAAA 59.539 41.667 0.00 0.00 0.00 2.52
2807 3356 4.106029 TGCTGTCGATGTACCTAGAAAC 57.894 45.455 0.00 0.00 0.00 2.78
2808 3357 3.508402 TGCTGTCGATGTACCTAGAAACA 59.492 43.478 0.00 0.00 0.00 2.83
2809 3358 4.159693 TGCTGTCGATGTACCTAGAAACAT 59.840 41.667 9.01 9.01 39.00 2.71
2810 3359 4.740695 GCTGTCGATGTACCTAGAAACATC 59.259 45.833 19.61 19.61 45.52 3.06
2811 3360 5.258456 TGTCGATGTACCTAGAAACATCC 57.742 43.478 21.83 14.17 45.99 3.51
2812 3361 4.201980 TGTCGATGTACCTAGAAACATCCG 60.202 45.833 21.83 18.18 45.99 4.18
2813 3362 4.036027 GTCGATGTACCTAGAAACATCCGA 59.964 45.833 21.83 19.41 45.99 4.55
2814 3363 4.825634 TCGATGTACCTAGAAACATCCGAT 59.174 41.667 21.83 1.37 45.99 4.18
2815 3364 5.048921 TCGATGTACCTAGAAACATCCGATC 60.049 44.000 21.83 7.76 45.99 3.69
2816 3365 4.931661 TGTACCTAGAAACATCCGATCC 57.068 45.455 0.00 0.00 0.00 3.36
2817 3366 3.317149 TGTACCTAGAAACATCCGATCCG 59.683 47.826 0.00 0.00 0.00 4.18
2818 3367 2.662866 ACCTAGAAACATCCGATCCGA 58.337 47.619 0.00 0.00 0.00 4.55
2819 3368 3.231818 ACCTAGAAACATCCGATCCGAT 58.768 45.455 0.00 0.00 0.00 4.18
2820 3369 3.005897 ACCTAGAAACATCCGATCCGATG 59.994 47.826 18.80 18.80 44.38 3.84
2877 3441 1.671054 GCGGGTGTAGCTTCAGCAA 60.671 57.895 21.74 0.00 45.16 3.91
2880 3444 1.131126 CGGGTGTAGCTTCAGCAATTG 59.869 52.381 21.74 0.00 45.16 2.32
2901 3465 0.453950 CGTTGTCATGCAAGCTGCTC 60.454 55.000 1.00 0.00 45.31 4.26
2907 3471 1.475280 TCATGCAAGCTGCTCCATTTC 59.525 47.619 1.00 0.00 45.31 2.17
2912 3476 1.471684 CAAGCTGCTCCATTTCCAGTC 59.528 52.381 1.00 0.00 0.00 3.51
2926 3490 0.389948 CCAGTCGTTGAGGTAGTGCC 60.390 60.000 0.00 0.00 37.58 5.01
2927 3491 0.389948 CAGTCGTTGAGGTAGTGCCC 60.390 60.000 0.00 0.00 38.26 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.750712 GGTTAAAATTGAGCCGGCACTA 59.249 45.455 31.54 20.75 0.00 2.74
1 2 1.544246 GGTTAAAATTGAGCCGGCACT 59.456 47.619 31.54 9.09 0.00 4.40
2 3 1.403647 GGGTTAAAATTGAGCCGGCAC 60.404 52.381 31.54 24.60 0.00 5.01
3 4 0.892063 GGGTTAAAATTGAGCCGGCA 59.108 50.000 31.54 8.70 0.00 5.69
4 5 1.182667 AGGGTTAAAATTGAGCCGGC 58.817 50.000 21.89 21.89 39.10 6.13
5 6 3.953712 AAAGGGTTAAAATTGAGCCGG 57.046 42.857 0.00 0.00 39.10 6.13
6 7 5.538118 AGAAAAAGGGTTAAAATTGAGCCG 58.462 37.500 1.17 0.00 39.10 5.52
15 16 8.852135 CCACACACTAATAGAAAAAGGGTTAAA 58.148 33.333 0.00 0.00 0.00 1.52
16 17 7.040271 GCCACACACTAATAGAAAAAGGGTTAA 60.040 37.037 0.00 0.00 0.00 2.01
17 18 6.431852 GCCACACACTAATAGAAAAAGGGTTA 59.568 38.462 0.00 0.00 0.00 2.85
18 19 5.243060 GCCACACACTAATAGAAAAAGGGTT 59.757 40.000 0.00 0.00 0.00 4.11
19 20 4.765339 GCCACACACTAATAGAAAAAGGGT 59.235 41.667 0.00 0.00 0.00 4.34
20 21 4.157840 GGCCACACACTAATAGAAAAAGGG 59.842 45.833 0.00 0.00 0.00 3.95
21 22 5.010282 AGGCCACACACTAATAGAAAAAGG 58.990 41.667 5.01 0.00 0.00 3.11
22 23 5.705441 TCAGGCCACACACTAATAGAAAAAG 59.295 40.000 5.01 0.00 0.00 2.27
23 24 5.626142 TCAGGCCACACACTAATAGAAAAA 58.374 37.500 5.01 0.00 0.00 1.94
24 25 5.235850 TCAGGCCACACACTAATAGAAAA 57.764 39.130 5.01 0.00 0.00 2.29
25 26 4.323485 CCTCAGGCCACACACTAATAGAAA 60.323 45.833 5.01 0.00 0.00 2.52
26 27 3.197766 CCTCAGGCCACACACTAATAGAA 59.802 47.826 5.01 0.00 0.00 2.10
27 28 2.766263 CCTCAGGCCACACACTAATAGA 59.234 50.000 5.01 0.00 0.00 1.98
28 29 2.501723 ACCTCAGGCCACACACTAATAG 59.498 50.000 5.01 0.00 0.00 1.73
29 30 2.546899 ACCTCAGGCCACACACTAATA 58.453 47.619 5.01 0.00 0.00 0.98
30 31 1.362224 ACCTCAGGCCACACACTAAT 58.638 50.000 5.01 0.00 0.00 1.73
31 32 1.136828 AACCTCAGGCCACACACTAA 58.863 50.000 5.01 0.00 0.00 2.24
32 33 0.396435 CAACCTCAGGCCACACACTA 59.604 55.000 5.01 0.00 0.00 2.74
33 34 1.149174 CAACCTCAGGCCACACACT 59.851 57.895 5.01 0.00 0.00 3.55
34 35 2.555547 GCAACCTCAGGCCACACAC 61.556 63.158 5.01 0.00 0.00 3.82
35 36 2.203337 GCAACCTCAGGCCACACA 60.203 61.111 5.01 0.00 0.00 3.72
43 44 2.270874 AATAGCCCCGGCAACCTCAG 62.271 60.000 8.74 0.00 44.88 3.35
44 45 1.858739 AAATAGCCCCGGCAACCTCA 61.859 55.000 8.74 0.00 44.88 3.86
45 46 0.683179 AAAATAGCCCCGGCAACCTC 60.683 55.000 8.74 0.00 44.88 3.85
46 47 0.252057 AAAAATAGCCCCGGCAACCT 60.252 50.000 8.74 0.00 44.88 3.50
47 48 0.108377 CAAAAATAGCCCCGGCAACC 60.108 55.000 8.74 0.00 44.88 3.77
48 49 0.606096 ACAAAAATAGCCCCGGCAAC 59.394 50.000 8.74 0.00 44.88 4.17
49 50 0.892063 GACAAAAATAGCCCCGGCAA 59.108 50.000 8.74 0.00 44.88 4.52
50 51 0.968393 GGACAAAAATAGCCCCGGCA 60.968 55.000 8.74 0.00 44.88 5.69
51 52 0.968393 TGGACAAAAATAGCCCCGGC 60.968 55.000 0.00 0.00 42.33 6.13
52 53 1.551452 TTGGACAAAAATAGCCCCGG 58.449 50.000 0.00 0.00 0.00 5.73
53 54 3.322369 GTTTTGGACAAAAATAGCCCCG 58.678 45.455 11.39 0.00 41.37 5.73
54 55 3.670625 GGTTTTGGACAAAAATAGCCCC 58.329 45.455 11.39 4.70 41.37 5.80
55 56 3.322369 CGGTTTTGGACAAAAATAGCCC 58.678 45.455 11.39 7.65 41.37 5.19
56 57 3.322369 CCGGTTTTGGACAAAAATAGCC 58.678 45.455 11.39 7.97 41.37 3.93
57 58 2.734606 GCCGGTTTTGGACAAAAATAGC 59.265 45.455 11.39 10.33 41.37 2.97
58 59 2.983803 CGCCGGTTTTGGACAAAAATAG 59.016 45.455 11.39 6.51 41.37 1.73
59 60 2.621998 TCGCCGGTTTTGGACAAAAATA 59.378 40.909 11.39 0.00 41.37 1.40
60 61 1.409427 TCGCCGGTTTTGGACAAAAAT 59.591 42.857 11.39 0.00 41.37 1.82
61 62 0.815734 TCGCCGGTTTTGGACAAAAA 59.184 45.000 11.39 0.00 41.37 1.94
62 63 0.815734 TTCGCCGGTTTTGGACAAAA 59.184 45.000 1.90 6.14 37.90 2.44
63 64 0.815734 TTTCGCCGGTTTTGGACAAA 59.184 45.000 1.90 0.00 0.00 2.83
64 65 0.815734 TTTTCGCCGGTTTTGGACAA 59.184 45.000 1.90 0.00 0.00 3.18
65 66 0.815734 TTTTTCGCCGGTTTTGGACA 59.184 45.000 1.90 0.00 0.00 4.02
66 67 1.483316 CTTTTTCGCCGGTTTTGGAC 58.517 50.000 1.90 0.00 0.00 4.02
67 68 0.386113 CCTTTTTCGCCGGTTTTGGA 59.614 50.000 1.90 0.00 0.00 3.53
68 69 0.386113 TCCTTTTTCGCCGGTTTTGG 59.614 50.000 1.90 0.00 0.00 3.28
69 70 2.124122 CTTCCTTTTTCGCCGGTTTTG 58.876 47.619 1.90 0.00 0.00 2.44
70 71 1.752498 ACTTCCTTTTTCGCCGGTTTT 59.248 42.857 1.90 0.00 0.00 2.43
71 72 1.335810 GACTTCCTTTTTCGCCGGTTT 59.664 47.619 1.90 0.00 0.00 3.27
72 73 0.949397 GACTTCCTTTTTCGCCGGTT 59.051 50.000 1.90 0.00 0.00 4.44
73 74 0.108019 AGACTTCCTTTTTCGCCGGT 59.892 50.000 1.90 0.00 0.00 5.28
74 75 1.069227 CAAGACTTCCTTTTTCGCCGG 60.069 52.381 0.00 0.00 31.42 6.13
75 76 1.069227 CCAAGACTTCCTTTTTCGCCG 60.069 52.381 0.00 0.00 31.42 6.46
76 77 2.227194 TCCAAGACTTCCTTTTTCGCC 58.773 47.619 0.00 0.00 31.42 5.54
77 78 3.826466 CATCCAAGACTTCCTTTTTCGC 58.174 45.455 0.00 0.00 31.42 4.70
78 79 3.253188 TGCATCCAAGACTTCCTTTTTCG 59.747 43.478 0.00 0.00 31.42 3.46
79 80 4.853924 TGCATCCAAGACTTCCTTTTTC 57.146 40.909 0.00 0.00 31.42 2.29
80 81 4.020839 CCATGCATCCAAGACTTCCTTTTT 60.021 41.667 0.00 0.00 31.42 1.94
81 82 3.512724 CCATGCATCCAAGACTTCCTTTT 59.487 43.478 0.00 0.00 31.42 2.27
82 83 3.094572 CCATGCATCCAAGACTTCCTTT 58.905 45.455 0.00 0.00 31.42 3.11
83 84 2.731572 CCATGCATCCAAGACTTCCTT 58.268 47.619 0.00 0.00 34.91 3.36
84 85 1.684248 GCCATGCATCCAAGACTTCCT 60.684 52.381 0.00 0.00 0.00 3.36
85 86 0.743097 GCCATGCATCCAAGACTTCC 59.257 55.000 0.00 0.00 0.00 3.46
86 87 1.674962 GAGCCATGCATCCAAGACTTC 59.325 52.381 0.00 0.00 0.00 3.01
87 88 1.760192 GAGCCATGCATCCAAGACTT 58.240 50.000 0.00 0.00 0.00 3.01
88 89 0.463295 CGAGCCATGCATCCAAGACT 60.463 55.000 0.00 0.00 0.00 3.24
89 90 1.442526 CCGAGCCATGCATCCAAGAC 61.443 60.000 0.00 0.00 0.00 3.01
90 91 1.153107 CCGAGCCATGCATCCAAGA 60.153 57.895 0.00 0.00 0.00 3.02
91 92 2.191513 CCCGAGCCATGCATCCAAG 61.192 63.158 0.00 0.00 0.00 3.61
92 93 2.124193 CCCGAGCCATGCATCCAA 60.124 61.111 0.00 0.00 0.00 3.53
93 94 4.881440 GCCCGAGCCATGCATCCA 62.881 66.667 0.00 0.00 0.00 3.41
95 96 4.916293 TCGCCCGAGCCATGCATC 62.916 66.667 0.00 0.00 34.57 3.91
96 97 3.779850 AATCGCCCGAGCCATGCAT 62.780 57.895 0.00 0.00 34.57 3.96
97 98 3.993614 AAATCGCCCGAGCCATGCA 62.994 57.895 0.00 0.00 34.57 3.96
98 99 2.283472 AAAAATCGCCCGAGCCATGC 62.283 55.000 0.00 0.00 34.57 4.06
99 100 1.809207 AAAAATCGCCCGAGCCATG 59.191 52.632 0.00 0.00 34.57 3.66
100 101 4.337013 AAAAATCGCCCGAGCCAT 57.663 50.000 0.00 0.00 34.57 4.40
132 133 2.290705 CGACCACCCTAGGACCATTTTT 60.291 50.000 11.48 0.00 0.00 1.94
133 134 1.280998 CGACCACCCTAGGACCATTTT 59.719 52.381 11.48 0.00 0.00 1.82
134 135 0.909623 CGACCACCCTAGGACCATTT 59.090 55.000 11.48 0.00 0.00 2.32
135 136 0.981277 CCGACCACCCTAGGACCATT 60.981 60.000 11.48 0.00 0.00 3.16
136 137 1.382695 CCGACCACCCTAGGACCAT 60.383 63.158 11.48 0.00 0.00 3.55
137 138 2.038329 CCGACCACCCTAGGACCA 59.962 66.667 11.48 0.00 0.00 4.02
138 139 2.762875 CCCGACCACCCTAGGACC 60.763 72.222 11.48 0.00 0.00 4.46
139 140 3.468140 GCCCGACCACCCTAGGAC 61.468 72.222 11.48 0.00 0.00 3.85
140 141 4.791069 GGCCCGACCACCCTAGGA 62.791 72.222 11.48 0.00 38.86 2.94
141 142 4.798682 AGGCCCGACCACCCTAGG 62.799 72.222 0.06 0.06 43.14 3.02
142 143 2.687566 AAGGCCCGACCACCCTAG 60.688 66.667 0.00 0.00 43.14 3.02
143 144 2.686106 GAAGGCCCGACCACCCTA 60.686 66.667 0.00 0.00 43.14 3.53
144 145 4.974438 TGAAGGCCCGACCACCCT 62.974 66.667 0.00 0.00 43.14 4.34
145 146 3.699134 GATGAAGGCCCGACCACCC 62.699 68.421 0.00 0.00 43.14 4.61
146 147 2.124695 GATGAAGGCCCGACCACC 60.125 66.667 0.00 0.00 43.14 4.61
147 148 0.815615 GATGATGAAGGCCCGACCAC 60.816 60.000 0.00 0.00 43.14 4.16
148 149 1.271127 TGATGATGAAGGCCCGACCA 61.271 55.000 0.00 0.00 43.14 4.02
149 150 0.109342 ATGATGATGAAGGCCCGACC 59.891 55.000 0.00 0.00 39.61 4.79
150 151 1.972872 AATGATGATGAAGGCCCGAC 58.027 50.000 0.00 0.00 0.00 4.79
151 152 3.855255 TTAATGATGATGAAGGCCCGA 57.145 42.857 0.00 0.00 0.00 5.14
152 153 4.916983 TTTTAATGATGATGAAGGCCCG 57.083 40.909 0.00 0.00 0.00 6.13
172 173 7.016268 TCCTTCGAGGGATATATAGCTGTTTTT 59.984 37.037 13.05 0.00 35.59 1.94
173 174 6.497259 TCCTTCGAGGGATATATAGCTGTTTT 59.503 38.462 13.05 0.00 35.59 2.43
174 175 6.017192 TCCTTCGAGGGATATATAGCTGTTT 58.983 40.000 13.05 0.00 35.59 2.83
175 176 5.580998 TCCTTCGAGGGATATATAGCTGTT 58.419 41.667 13.05 0.00 35.59 3.16
176 177 5.194473 TCCTTCGAGGGATATATAGCTGT 57.806 43.478 13.05 0.00 35.59 4.40
177 178 6.334202 GTTTCCTTCGAGGGATATATAGCTG 58.666 44.000 18.02 0.00 35.59 4.24
178 179 5.422650 GGTTTCCTTCGAGGGATATATAGCT 59.577 44.000 18.02 0.00 35.59 3.32
179 180 5.395435 GGGTTTCCTTCGAGGGATATATAGC 60.395 48.000 18.02 9.76 35.59 2.97
180 181 5.128991 GGGGTTTCCTTCGAGGGATATATAG 59.871 48.000 18.02 0.00 35.59 1.31
181 182 5.028131 GGGGTTTCCTTCGAGGGATATATA 58.972 45.833 18.02 0.00 35.59 0.86
182 183 3.844804 GGGGTTTCCTTCGAGGGATATAT 59.155 47.826 18.02 0.00 35.59 0.86
183 184 3.245441 GGGGTTTCCTTCGAGGGATATA 58.755 50.000 18.02 0.00 35.59 0.86
184 185 2.055579 GGGGTTTCCTTCGAGGGATAT 58.944 52.381 18.02 0.00 35.59 1.63
196 197 2.035155 CCAACGGAGGGGGTTTCC 59.965 66.667 0.00 0.00 0.00 3.13
198 199 2.518933 CACCAACGGAGGGGGTTT 59.481 61.111 0.36 0.00 35.92 3.27
284 285 0.036388 TGTGCTACTGGCTAACTGGC 60.036 55.000 0.00 0.00 42.39 4.85
285 286 2.009042 GCTGTGCTACTGGCTAACTGG 61.009 57.143 0.00 0.00 42.39 4.00
286 287 1.338105 TGCTGTGCTACTGGCTAACTG 60.338 52.381 0.00 0.00 42.39 3.16
287 288 0.976641 TGCTGTGCTACTGGCTAACT 59.023 50.000 0.00 0.00 42.39 2.24
288 289 1.936547 GATGCTGTGCTACTGGCTAAC 59.063 52.381 0.00 0.00 42.39 2.34
289 290 1.833630 AGATGCTGTGCTACTGGCTAA 59.166 47.619 0.00 0.00 42.39 3.09
290 291 1.489481 AGATGCTGTGCTACTGGCTA 58.511 50.000 0.00 0.00 42.39 3.93
291 292 1.137872 GTAGATGCTGTGCTACTGGCT 59.862 52.381 0.00 0.00 42.39 4.75
308 309 0.950116 CCGGCGTTAGGTAGGAGTAG 59.050 60.000 6.01 0.00 0.00 2.57
309 310 0.255890 ACCGGCGTTAGGTAGGAGTA 59.744 55.000 6.01 0.00 40.80 2.59
310 311 1.000396 ACCGGCGTTAGGTAGGAGT 60.000 57.895 6.01 0.00 40.80 3.85
311 312 1.033746 TGACCGGCGTTAGGTAGGAG 61.034 60.000 6.01 0.00 43.01 3.69
312 313 1.001020 TGACCGGCGTTAGGTAGGA 60.001 57.895 6.01 0.00 43.01 2.94
313 314 1.033746 TCTGACCGGCGTTAGGTAGG 61.034 60.000 6.01 0.00 43.01 3.18
340 341 5.163854 CCATTTGTTAGTTGGTCGAGATCAC 60.164 44.000 0.00 0.00 0.00 3.06
341 342 4.935205 CCATTTGTTAGTTGGTCGAGATCA 59.065 41.667 0.00 0.00 0.00 2.92
342 343 5.175859 TCCATTTGTTAGTTGGTCGAGATC 58.824 41.667 0.00 0.00 0.00 2.75
344 345 4.610605 TCCATTTGTTAGTTGGTCGAGA 57.389 40.909 0.00 0.00 0.00 4.04
345 346 5.449304 GTTTCCATTTGTTAGTTGGTCGAG 58.551 41.667 0.00 0.00 0.00 4.04
346 347 4.024725 CGTTTCCATTTGTTAGTTGGTCGA 60.025 41.667 0.00 0.00 0.00 4.20
347 348 4.215965 CGTTTCCATTTGTTAGTTGGTCG 58.784 43.478 0.00 0.00 0.00 4.79
392 393 2.294449 TAGATGGATGGAGGAGGACG 57.706 55.000 0.00 0.00 0.00 4.79
430 435 5.816955 AATTTCATAGTAGGAGGAGGAGC 57.183 43.478 0.00 0.00 0.00 4.70
497 502 3.402058 TCGACTTCGTTAGAGCTTAGC 57.598 47.619 0.00 0.00 40.80 3.09
498 503 5.158101 TGATCGACTTCGTTAGAGCTTAG 57.842 43.478 0.00 0.00 40.80 2.18
499 504 5.106436 TGTTGATCGACTTCGTTAGAGCTTA 60.106 40.000 14.27 0.00 40.80 3.09
500 505 4.167268 GTTGATCGACTTCGTTAGAGCTT 58.833 43.478 5.79 0.00 40.80 3.74
510 515 5.533482 AGTATATGGCTGTTGATCGACTTC 58.467 41.667 14.27 5.76 0.00 3.01
533 538 0.615331 ACGTCCTACTGTACCTCGGA 59.385 55.000 0.00 0.00 0.00 4.55
534 539 0.731417 CACGTCCTACTGTACCTCGG 59.269 60.000 0.00 0.00 0.00 4.63
535 540 1.396301 GACACGTCCTACTGTACCTCG 59.604 57.143 0.00 0.00 0.00 4.63
536 541 2.709213 AGACACGTCCTACTGTACCTC 58.291 52.381 0.00 0.00 0.00 3.85
537 542 2.875094 AGACACGTCCTACTGTACCT 57.125 50.000 0.00 0.00 0.00 3.08
538 543 3.243002 GCATAGACACGTCCTACTGTACC 60.243 52.174 0.00 0.00 0.00 3.34
539 544 3.243002 GGCATAGACACGTCCTACTGTAC 60.243 52.174 0.00 0.00 0.00 2.90
540 545 2.947652 GGCATAGACACGTCCTACTGTA 59.052 50.000 0.00 0.00 0.00 2.74
541 546 1.749634 GGCATAGACACGTCCTACTGT 59.250 52.381 0.00 0.00 0.00 3.55
542 547 1.067212 GGGCATAGACACGTCCTACTG 59.933 57.143 0.00 0.00 0.00 2.74
543 548 1.341679 TGGGCATAGACACGTCCTACT 60.342 52.381 0.00 0.00 0.00 2.57
551 567 2.304180 AGCTATGGATGGGCATAGACAC 59.696 50.000 0.00 0.00 34.29 3.67
556 572 3.955471 GCTTTAGCTATGGATGGGCATA 58.045 45.455 0.00 0.00 38.21 3.14
581 597 1.579429 GATTGGTGGCGCGAAAACT 59.421 52.632 12.10 0.00 0.00 2.66
650 666 7.363968 GCTCTTATGTTAGTTTACAGAGGGAGT 60.364 40.741 0.00 0.00 30.73 3.85
651 667 6.981559 GCTCTTATGTTAGTTTACAGAGGGAG 59.018 42.308 0.00 0.00 30.97 4.30
652 668 6.405508 CGCTCTTATGTTAGTTTACAGAGGGA 60.406 42.308 4.76 0.00 35.05 4.20
653 669 5.749109 CGCTCTTATGTTAGTTTACAGAGGG 59.251 44.000 0.00 0.00 30.36 4.30
654 670 6.331061 ACGCTCTTATGTTAGTTTACAGAGG 58.669 40.000 0.00 0.00 0.00 3.69
655 671 7.813852 AACGCTCTTATGTTAGTTTACAGAG 57.186 36.000 0.00 0.00 0.00 3.35
656 672 9.695526 TTAAACGCTCTTATGTTAGTTTACAGA 57.304 29.630 0.00 0.00 34.92 3.41
702 718 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
703 719 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
704 720 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
705 721 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
706 722 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
707 723 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
708 724 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
709 725 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
710 726 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
711 727 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
712 728 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
713 729 7.902920 ATTGTACTCCCTCCGTAAACTAATA 57.097 36.000 0.00 0.00 0.00 0.98
714 730 6.803366 ATTGTACTCCCTCCGTAAACTAAT 57.197 37.500 0.00 0.00 0.00 1.73
715 731 6.663093 TGTATTGTACTCCCTCCGTAAACTAA 59.337 38.462 0.00 0.00 0.00 2.24
716 732 6.186957 TGTATTGTACTCCCTCCGTAAACTA 58.813 40.000 0.00 0.00 0.00 2.24
717 733 5.018809 TGTATTGTACTCCCTCCGTAAACT 58.981 41.667 0.00 0.00 0.00 2.66
718 734 5.329035 TGTATTGTACTCCCTCCGTAAAC 57.671 43.478 0.00 0.00 0.00 2.01
719 735 5.999205 TTGTATTGTACTCCCTCCGTAAA 57.001 39.130 0.00 0.00 0.00 2.01
720 736 5.895534 AGATTGTATTGTACTCCCTCCGTAA 59.104 40.000 0.00 0.00 0.00 3.18
721 737 5.301045 CAGATTGTATTGTACTCCCTCCGTA 59.699 44.000 0.00 0.00 0.00 4.02
722 738 4.099573 CAGATTGTATTGTACTCCCTCCGT 59.900 45.833 0.00 0.00 0.00 4.69
723 739 4.099573 ACAGATTGTATTGTACTCCCTCCG 59.900 45.833 0.00 0.00 0.00 4.63
724 740 5.602628 GACAGATTGTATTGTACTCCCTCC 58.397 45.833 0.00 0.00 0.00 4.30
725 741 5.067413 TCGACAGATTGTATTGTACTCCCTC 59.933 44.000 0.00 0.00 0.00 4.30
726 742 4.954202 TCGACAGATTGTATTGTACTCCCT 59.046 41.667 0.00 0.00 0.00 4.20
727 743 5.067413 TCTCGACAGATTGTATTGTACTCCC 59.933 44.000 0.00 0.00 0.00 4.30
728 744 6.132791 TCTCGACAGATTGTATTGTACTCC 57.867 41.667 0.00 0.00 0.00 3.85
729 745 7.418408 TGATCTCGACAGATTGTATTGTACTC 58.582 38.462 0.00 0.00 39.71 2.59
730 746 7.283354 TCTGATCTCGACAGATTGTATTGTACT 59.717 37.037 0.36 0.00 39.71 2.73
731 747 7.418408 TCTGATCTCGACAGATTGTATTGTAC 58.582 38.462 0.36 0.00 39.71 2.90
773 789 0.106918 TGTTTGTTGGCCGGACTTCT 60.107 50.000 9.82 0.00 0.00 2.85
774 790 0.741915 TTGTTTGTTGGCCGGACTTC 59.258 50.000 9.82 1.31 0.00 3.01
775 791 0.458260 GTTGTTTGTTGGCCGGACTT 59.542 50.000 9.82 0.00 0.00 3.01
834 874 1.005630 GAGCTCGGAATCGGATGGG 60.006 63.158 0.00 0.00 36.95 4.00
896 938 0.798771 GCACTAGCTTGACGACGAGG 60.799 60.000 0.00 0.00 37.91 4.63
909 951 0.667487 CTGTGTCACCGGTGCACTAG 60.667 60.000 37.94 31.72 37.97 2.57
910 952 1.365999 CTGTGTCACCGGTGCACTA 59.634 57.895 37.94 29.11 37.97 2.74
912 954 3.649986 GCTGTGTCACCGGTGCAC 61.650 66.667 35.28 35.28 37.78 4.57
944 989 1.006571 TCTGACCTTGGCGTTCGTC 60.007 57.895 0.00 0.00 0.00 4.20
989 1040 1.743252 GCGGCCATCCTAGCTATGC 60.743 63.158 2.24 0.00 0.00 3.14
1566 1619 4.457496 ACGCAGATCACCCGCCTG 62.457 66.667 0.00 0.00 0.00 4.85
2007 2061 0.676782 AAATCTACCACACCCTGCGC 60.677 55.000 0.00 0.00 0.00 6.09
2022 2076 0.865769 ACGCCAACACACGAGAAATC 59.134 50.000 0.00 0.00 0.00 2.17
2029 2083 2.555782 CCATCACGCCAACACACG 59.444 61.111 0.00 0.00 0.00 4.49
2067 2121 4.634012 ACAAGAACATACAAGGGCTACA 57.366 40.909 0.00 0.00 0.00 2.74
2102 2158 5.809001 ACACATAGTTCATCACCACTTCAT 58.191 37.500 0.00 0.00 0.00 2.57
2108 2164 3.368013 GGTCGACACATAGTTCATCACCA 60.368 47.826 18.91 0.00 0.00 4.17
2110 2166 3.119101 AGGGTCGACACATAGTTCATCAC 60.119 47.826 22.01 0.00 0.00 3.06
2149 2205 3.879998 TGCGAGGCAGGTTGAAATATAA 58.120 40.909 0.00 0.00 33.32 0.98
2150 2206 3.552132 TGCGAGGCAGGTTGAAATATA 57.448 42.857 0.00 0.00 33.32 0.86
2152 2208 2.083774 CTTGCGAGGCAGGTTGAAATA 58.916 47.619 0.00 0.00 40.61 1.40
2163 2223 3.717707 TGTATCTTCATACTTGCGAGGC 58.282 45.455 5.79 0.00 36.55 4.70
2164 2224 5.178252 CCAATGTATCTTCATACTTGCGAGG 59.822 44.000 5.79 0.00 36.55 4.63
2168 2228 5.756195 TGCCAATGTATCTTCATACTTGC 57.244 39.130 0.00 0.00 36.55 4.01
2172 2232 5.559035 GCGACTTGCCAATGTATCTTCATAC 60.559 44.000 0.00 0.00 37.76 2.39
2198 2258 7.148590 GGACATTCATTTGATTTTTAGTGCACC 60.149 37.037 14.63 0.00 0.00 5.01
2199 2259 7.599998 AGGACATTCATTTGATTTTTAGTGCAC 59.400 33.333 9.40 9.40 0.00 4.57
2222 2282 2.912956 AGGGTGAAGAGCATTTACAGGA 59.087 45.455 0.00 0.00 0.00 3.86
2224 2284 2.421424 GCAGGGTGAAGAGCATTTACAG 59.579 50.000 0.00 0.00 0.00 2.74
2261 2321 9.806203 CTTCAGATTAGATGATGCTTCCTATAG 57.194 37.037 0.00 0.00 0.00 1.31
2268 2328 7.228906 CCACAATCTTCAGATTAGATGATGCTT 59.771 37.037 1.64 0.00 42.41 3.91
2270 2330 6.485984 ACCACAATCTTCAGATTAGATGATGC 59.514 38.462 1.64 0.00 42.41 3.91
2271 2331 9.722184 ATACCACAATCTTCAGATTAGATGATG 57.278 33.333 1.64 0.00 42.41 3.07
2282 2342 7.819644 TGACAATCAAATACCACAATCTTCAG 58.180 34.615 0.00 0.00 0.00 3.02
2305 2365 9.926158 ATTGCTTTTGTATGTTGAATATGTTGA 57.074 25.926 0.00 0.00 0.00 3.18
2308 2368 9.502145 CGTATTGCTTTTGTATGTTGAATATGT 57.498 29.630 0.00 0.00 0.00 2.29
2309 2369 9.715123 TCGTATTGCTTTTGTATGTTGAATATG 57.285 29.630 0.00 0.00 0.00 1.78
2313 2373 9.549509 GTATTCGTATTGCTTTTGTATGTTGAA 57.450 29.630 0.00 0.00 0.00 2.69
2404 2471 5.991606 GTGGCCTAATGCTTCTTTTTCTTTT 59.008 36.000 3.32 0.00 40.92 2.27
2405 2472 5.511373 GGTGGCCTAATGCTTCTTTTTCTTT 60.511 40.000 3.32 0.00 40.92 2.52
2406 2473 4.021104 GGTGGCCTAATGCTTCTTTTTCTT 60.021 41.667 3.32 0.00 40.92 2.52
2407 2474 3.511540 GGTGGCCTAATGCTTCTTTTTCT 59.488 43.478 3.32 0.00 40.92 2.52
2408 2475 3.258123 TGGTGGCCTAATGCTTCTTTTTC 59.742 43.478 3.32 0.00 40.92 2.29
2409 2476 3.238597 TGGTGGCCTAATGCTTCTTTTT 58.761 40.909 3.32 0.00 40.92 1.94
2414 2481 3.820557 TCTAATGGTGGCCTAATGCTTC 58.179 45.455 3.32 0.00 40.92 3.86
2416 2483 3.951563 TTCTAATGGTGGCCTAATGCT 57.048 42.857 3.32 0.00 40.92 3.79
2436 2503 2.422093 GCCTACTGGAATTAGCTGCCTT 60.422 50.000 0.00 0.00 34.57 4.35
2476 2959 3.563808 TCACATGGCTGGCGTATTTTATC 59.436 43.478 0.00 0.00 0.00 1.75
2519 3002 6.219302 ACCTGTTCTACGACAATTTTTACG 57.781 37.500 0.00 0.00 0.00 3.18
2544 3027 2.914777 CTTCTGCCCCTACTCTGCGC 62.915 65.000 0.00 0.00 0.00 6.09
2545 3028 1.142748 CTTCTGCCCCTACTCTGCG 59.857 63.158 0.00 0.00 0.00 5.18
2611 3094 8.137437 ACTTGAGAGTGTCAACCAATTTTATTG 58.863 33.333 0.00 0.00 40.45 1.90
2632 3115 3.817084 CTCTTTGTTGATGGCAGACTTGA 59.183 43.478 0.00 0.00 0.00 3.02
2633 3116 3.817084 TCTCTTTGTTGATGGCAGACTTG 59.183 43.478 0.00 0.00 0.00 3.16
2642 3125 9.173939 GTCATAGTTTGTTTCTCTTTGTTGATG 57.826 33.333 0.00 0.00 0.00 3.07
2692 3175 7.949006 ACGGAGGGAGTATATTATACTTCAACT 59.051 37.037 19.40 10.87 0.00 3.16
2737 3220 5.310451 AGCGAAATTAGGGTAGTGTCAAAA 58.690 37.500 0.00 0.00 0.00 2.44
2738 3221 4.901868 AGCGAAATTAGGGTAGTGTCAAA 58.098 39.130 0.00 0.00 0.00 2.69
2739 3222 4.546829 AGCGAAATTAGGGTAGTGTCAA 57.453 40.909 0.00 0.00 0.00 3.18
2741 3224 5.690857 GTCATAGCGAAATTAGGGTAGTGTC 59.309 44.000 0.00 0.00 0.00 3.67
2742 3225 5.363005 AGTCATAGCGAAATTAGGGTAGTGT 59.637 40.000 0.00 0.00 0.00 3.55
2743 3226 5.844004 AGTCATAGCGAAATTAGGGTAGTG 58.156 41.667 0.00 0.00 0.00 2.74
2744 3227 7.432059 GTTAGTCATAGCGAAATTAGGGTAGT 58.568 38.462 0.00 0.00 0.00 2.73
2746 3229 6.552350 AGGTTAGTCATAGCGAAATTAGGGTA 59.448 38.462 0.00 0.00 0.00 3.69
2748 3231 5.855045 AGGTTAGTCATAGCGAAATTAGGG 58.145 41.667 0.00 0.00 0.00 3.53
2749 3232 6.202954 CCAAGGTTAGTCATAGCGAAATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
2750 3233 6.761714 ACCAAGGTTAGTCATAGCGAAATTAG 59.238 38.462 0.00 0.00 0.00 1.73
2751 3234 6.646267 ACCAAGGTTAGTCATAGCGAAATTA 58.354 36.000 0.00 0.00 0.00 1.40
2753 3236 5.099042 ACCAAGGTTAGTCATAGCGAAAT 57.901 39.130 0.00 0.00 0.00 2.17
2754 3237 4.222145 AGACCAAGGTTAGTCATAGCGAAA 59.778 41.667 0.00 0.00 35.38 3.46
2755 3238 3.767673 AGACCAAGGTTAGTCATAGCGAA 59.232 43.478 0.00 0.00 35.38 4.70
2756 3239 3.362706 AGACCAAGGTTAGTCATAGCGA 58.637 45.455 0.00 0.00 35.38 4.93
2797 3346 3.824133 TCGGATCGGATGTTTCTAGGTA 58.176 45.455 0.00 0.00 0.00 3.08
2798 3347 2.662866 TCGGATCGGATGTTTCTAGGT 58.337 47.619 0.00 0.00 0.00 3.08
2799 3348 3.579709 CATCGGATCGGATGTTTCTAGG 58.420 50.000 26.86 6.79 39.15 3.02
2800 3349 2.989840 GCATCGGATCGGATGTTTCTAG 59.010 50.000 31.86 14.51 44.47 2.43
2801 3350 2.628178 AGCATCGGATCGGATGTTTCTA 59.372 45.455 31.86 1.59 44.47 2.10
2802 3351 1.414181 AGCATCGGATCGGATGTTTCT 59.586 47.619 31.86 22.41 44.47 2.52
2803 3352 1.528586 CAGCATCGGATCGGATGTTTC 59.471 52.381 31.86 21.02 44.47 2.78
2804 3353 1.586422 CAGCATCGGATCGGATGTTT 58.414 50.000 31.86 22.39 44.47 2.83
2805 3354 0.250038 CCAGCATCGGATCGGATGTT 60.250 55.000 31.86 27.10 44.47 2.71
2806 3355 1.368950 CCAGCATCGGATCGGATGT 59.631 57.895 31.86 21.10 44.47 3.06
2807 3356 2.031516 GCCAGCATCGGATCGGATG 61.032 63.158 29.44 29.44 45.23 3.51
2808 3357 2.164865 GAGCCAGCATCGGATCGGAT 62.165 60.000 9.82 9.82 30.54 4.18
2809 3358 2.839632 AGCCAGCATCGGATCGGA 60.840 61.111 5.34 5.34 0.00 4.55
2810 3359 2.356793 GAGCCAGCATCGGATCGG 60.357 66.667 0.00 0.00 30.54 4.18
2811 3360 1.664017 CAGAGCCAGCATCGGATCG 60.664 63.158 0.21 0.00 46.36 3.69
2812 3361 0.105593 TTCAGAGCCAGCATCGGATC 59.894 55.000 0.00 0.00 41.99 3.36
2813 3362 0.179062 GTTCAGAGCCAGCATCGGAT 60.179 55.000 0.00 0.00 0.00 4.18
2814 3363 1.219124 GTTCAGAGCCAGCATCGGA 59.781 57.895 0.00 0.00 0.00 4.55
2815 3364 1.817099 GGTTCAGAGCCAGCATCGG 60.817 63.158 0.00 0.00 0.00 4.18
2816 3365 1.088340 CAGGTTCAGAGCCAGCATCG 61.088 60.000 6.02 0.00 0.00 3.84
2817 3366 0.035630 ACAGGTTCAGAGCCAGCATC 60.036 55.000 6.02 0.00 0.00 3.91
2818 3367 1.209019 CTACAGGTTCAGAGCCAGCAT 59.791 52.381 6.02 0.00 0.00 3.79
2819 3368 0.610174 CTACAGGTTCAGAGCCAGCA 59.390 55.000 6.02 0.00 0.00 4.41
2820 3369 0.107945 CCTACAGGTTCAGAGCCAGC 60.108 60.000 6.02 0.00 0.00 4.85
2841 3390 0.723981 GCTGCTGCTACTGTTACTGC 59.276 55.000 8.53 0.00 36.03 4.40
2842 3391 0.994995 CGCTGCTGCTACTGTTACTG 59.005 55.000 14.03 0.00 36.97 2.74
2848 3412 2.225791 TACACCCGCTGCTGCTACTG 62.226 60.000 14.03 7.68 36.97 2.74
2861 3425 1.474077 CCAATTGCTGAAGCTACACCC 59.526 52.381 0.00 0.00 42.66 4.61
2866 3430 1.199789 CAACGCCAATTGCTGAAGCTA 59.800 47.619 0.00 0.00 42.66 3.32
2877 3441 0.388907 GCTTGCATGACAACGCCAAT 60.389 50.000 3.33 0.00 33.68 3.16
2880 3444 1.443194 CAGCTTGCATGACAACGCC 60.443 57.895 3.33 0.00 34.74 5.68
2901 3465 2.185004 ACCTCAACGACTGGAAATGG 57.815 50.000 0.00 0.00 0.00 3.16
2907 3471 0.389948 GGCACTACCTCAACGACTGG 60.390 60.000 0.00 0.00 34.51 4.00
2912 3476 1.741770 GCAGGGCACTACCTCAACG 60.742 63.158 0.00 0.00 39.34 4.10
2926 3490 1.228521 TTGACATGTGGTGGGCAGG 60.229 57.895 1.15 0.00 0.00 4.85
2927 3491 1.246056 CCTTGACATGTGGTGGGCAG 61.246 60.000 1.15 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.