Multiple sequence alignment - TraesCS5B01G327600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G327600 chr5B 100.000 2767 0 0 676 3442 511373264 511370498 0.000000e+00 5110.0
1 TraesCS5B01G327600 chr5B 100.000 374 0 0 1 374 511373939 511373566 0.000000e+00 691.0
2 TraesCS5B01G327600 chr5B 87.402 508 42 8 2701 3203 511365984 511365494 6.450000e-157 564.0
3 TraesCS5B01G327600 chr5A 94.881 2012 77 8 708 2698 537125312 537123306 0.000000e+00 3121.0
4 TraesCS5B01G327600 chr5A 93.190 558 33 4 2744 3297 537123199 537122643 0.000000e+00 815.0
5 TraesCS5B01G327600 chr5A 94.663 356 18 1 1 355 512715128 512714773 5.020000e-153 551.0
6 TraesCS5B01G327600 chr5A 88.584 438 42 5 2716 3146 537120483 537120047 3.040000e-145 525.0
7 TraesCS5B01G327600 chr5A 85.714 161 14 2 3283 3442 537122504 537122352 9.890000e-36 161.0
8 TraesCS5B01G327600 chr5D 95.084 1912 59 10 708 2613 423535634 423533752 0.000000e+00 2977.0
9 TraesCS5B01G327600 chr5D 94.957 694 29 5 2753 3442 423533747 423533056 0.000000e+00 1083.0
10 TraesCS5B01G327600 chrUn 79.646 1469 241 38 982 2412 87219736 87221184 0.000000e+00 1003.0
11 TraesCS5B01G327600 chrUn 76.994 1404 225 48 1068 2413 87052749 87051386 0.000000e+00 713.0
12 TraesCS5B01G327600 chr7D 79.442 1469 242 40 982 2412 602291765 602293211 0.000000e+00 985.0
13 TraesCS5B01G327600 chr7D 77.403 1540 238 59 940 2412 602286629 602288125 0.000000e+00 815.0
14 TraesCS5B01G327600 chr7D 76.032 872 176 26 1030 1884 566519901 566520756 4.110000e-114 422.0
15 TraesCS5B01G327600 chr6B 79.170 1397 229 35 1040 2408 718230999 718232361 0.000000e+00 911.0
16 TraesCS5B01G327600 chr6B 78.269 1040 187 19 1050 2068 718294211 718295232 1.740000e-177 632.0
17 TraesCS5B01G327600 chr6B 75.465 1345 257 44 1108 2412 716425773 716427084 3.830000e-164 588.0
18 TraesCS5B01G327600 chr6B 74.217 1245 274 32 1024 2240 717930659 717929434 8.640000e-131 477.0
19 TraesCS5B01G327600 chr7A 78.465 1277 206 33 1134 2369 694044500 694045748 0.000000e+00 771.0
20 TraesCS5B01G327600 chr7A 80.292 411 65 14 1496 1895 652701848 652702253 2.600000e-76 296.0
21 TraesCS5B01G327600 chr6D 74.678 1319 269 46 957 2240 472811564 472810276 3.040000e-145 525.0
22 TraesCS5B01G327600 chr6D 83.481 563 73 6 1357 1910 472909747 472910298 1.100000e-139 507.0
23 TraesCS5B01G327600 chr6D 79.182 269 56 0 8 276 29394305 29394037 1.630000e-43 187.0
24 TraesCS5B01G327600 chr6D 78.355 231 48 2 17 246 375014061 375014290 7.700000e-32 148.0
25 TraesCS5B01G327600 chr6D 77.570 107 23 1 1171 1277 473059164 473059269 2.870000e-06 63.9
26 TraesCS5B01G327600 chr7B 76.023 855 168 27 1050 1884 620679114 620678277 3.200000e-110 409.0
27 TraesCS5B01G327600 chr1B 85.113 309 38 4 1626 1930 630741854 630742158 3.340000e-80 309.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G327600 chr5B 511370498 511373939 3441 True 2900.5 5110 100.00000 1 3442 2 chr5B.!!$R2 3441
1 TraesCS5B01G327600 chr5A 537120047 537125312 5265 True 1155.5 3121 90.59225 708 3442 4 chr5A.!!$R2 2734
2 TraesCS5B01G327600 chr5D 423533056 423535634 2578 True 2030.0 2977 95.02050 708 3442 2 chr5D.!!$R1 2734
3 TraesCS5B01G327600 chrUn 87219736 87221184 1448 False 1003.0 1003 79.64600 982 2412 1 chrUn.!!$F1 1430
4 TraesCS5B01G327600 chrUn 87051386 87052749 1363 True 713.0 713 76.99400 1068 2413 1 chrUn.!!$R1 1345
5 TraesCS5B01G327600 chr7D 602286629 602293211 6582 False 900.0 985 78.42250 940 2412 2 chr7D.!!$F2 1472
6 TraesCS5B01G327600 chr7D 566519901 566520756 855 False 422.0 422 76.03200 1030 1884 1 chr7D.!!$F1 854
7 TraesCS5B01G327600 chr6B 718230999 718232361 1362 False 911.0 911 79.17000 1040 2408 1 chr6B.!!$F2 1368
8 TraesCS5B01G327600 chr6B 718294211 718295232 1021 False 632.0 632 78.26900 1050 2068 1 chr6B.!!$F3 1018
9 TraesCS5B01G327600 chr6B 716425773 716427084 1311 False 588.0 588 75.46500 1108 2412 1 chr6B.!!$F1 1304
10 TraesCS5B01G327600 chr6B 717929434 717930659 1225 True 477.0 477 74.21700 1024 2240 1 chr6B.!!$R1 1216
11 TraesCS5B01G327600 chr7A 694044500 694045748 1248 False 771.0 771 78.46500 1134 2369 1 chr7A.!!$F2 1235
12 TraesCS5B01G327600 chr6D 472810276 472811564 1288 True 525.0 525 74.67800 957 2240 1 chr6D.!!$R2 1283
13 TraesCS5B01G327600 chr6D 472909747 472910298 551 False 507.0 507 83.48100 1357 1910 1 chr6D.!!$F2 553
14 TraesCS5B01G327600 chr7B 620678277 620679114 837 True 409.0 409 76.02300 1050 1884 1 chr7B.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.033699 GGCCTCCTTCAATCCAAGCT 60.034 55.0 0.00 0.0 0.0 3.74 F
259 260 0.099082 CTCTAGGTCCGACGTGAAGC 59.901 60.0 0.00 0.0 0.0 3.86 F
280 281 0.171231 GCCCGATCCAAAAGCTGTTC 59.829 55.0 0.00 0.0 0.0 3.18 F
328 329 0.250684 TCAATCTGCAGGCGTTTGGA 60.251 50.0 15.13 0.0 0.0 3.53 F
2325 7539 0.386113 GAGAGGTCATAGTCCGTGGC 59.614 60.0 0.00 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 6979 0.752658 AAGCCCTGAACACTTTTGCC 59.247 50.000 0.00 0.0 0.0 4.52 R
2324 7538 4.882671 TGACTGAGACAAAAACAAGAGC 57.117 40.909 0.00 0.0 0.0 4.09 R
2325 7539 6.369059 ACATGACTGAGACAAAAACAAGAG 57.631 37.500 0.00 0.0 0.0 2.85 R
2430 7653 8.592809 AGACTAATCCATTCCATGAAGAGATAC 58.407 37.037 0.00 0.0 0.0 2.24 R
3170 8464 1.539827 GGTGACTTTCCGGACAAATGG 59.460 52.381 1.83 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.636148 ATCACCCAAGCATGCAAACT 58.364 45.000 21.98 0.00 0.00 2.66
20 21 0.675083 TCACCCAAGCATGCAAACTG 59.325 50.000 21.98 10.97 0.00 3.16
21 22 0.947180 CACCCAAGCATGCAAACTGC 60.947 55.000 21.98 2.46 45.29 4.40
32 33 2.442189 GCAAACTGCAGCGTATACAG 57.558 50.000 15.27 0.00 44.26 2.74
33 34 1.062587 GCAAACTGCAGCGTATACAGG 59.937 52.381 15.27 0.00 44.26 4.00
34 35 2.346803 CAAACTGCAGCGTATACAGGT 58.653 47.619 15.27 0.00 35.70 4.00
35 36 2.742053 CAAACTGCAGCGTATACAGGTT 59.258 45.455 15.27 0.00 41.91 3.50
36 37 2.010145 ACTGCAGCGTATACAGGTTG 57.990 50.000 15.27 0.00 35.70 3.77
37 38 1.275291 ACTGCAGCGTATACAGGTTGT 59.725 47.619 15.27 0.00 35.70 3.32
38 39 1.927174 CTGCAGCGTATACAGGTTGTC 59.073 52.381 0.00 0.00 0.00 3.18
39 40 1.287425 GCAGCGTATACAGGTTGTCC 58.713 55.000 3.32 0.00 0.00 4.02
40 41 1.134788 GCAGCGTATACAGGTTGTCCT 60.135 52.381 3.32 0.00 46.37 3.85
41 42 2.810650 CAGCGTATACAGGTTGTCCTC 58.189 52.381 3.32 0.00 43.07 3.71
42 43 1.404391 AGCGTATACAGGTTGTCCTCG 59.596 52.381 3.32 0.00 43.07 4.63
43 44 1.402968 GCGTATACAGGTTGTCCTCGA 59.597 52.381 3.32 0.00 43.07 4.04
44 45 2.541178 GCGTATACAGGTTGTCCTCGAG 60.541 54.545 5.13 5.13 43.07 4.04
45 46 2.681848 CGTATACAGGTTGTCCTCGAGT 59.318 50.000 12.31 0.00 43.07 4.18
46 47 3.487042 CGTATACAGGTTGTCCTCGAGTG 60.487 52.174 12.31 3.47 43.07 3.51
47 48 1.254026 TACAGGTTGTCCTCGAGTGG 58.746 55.000 12.31 0.00 43.07 4.00
48 49 1.374758 CAGGTTGTCCTCGAGTGGC 60.375 63.158 12.31 5.11 43.07 5.01
49 50 2.047179 GGTTGTCCTCGAGTGGCC 60.047 66.667 12.31 0.00 0.00 5.36
50 51 2.584391 GGTTGTCCTCGAGTGGCCT 61.584 63.158 12.31 0.00 0.00 5.19
51 52 1.374758 GTTGTCCTCGAGTGGCCTG 60.375 63.158 12.31 0.00 0.00 4.85
52 53 1.533033 TTGTCCTCGAGTGGCCTGA 60.533 57.895 12.31 0.00 0.00 3.86
53 54 0.904865 TTGTCCTCGAGTGGCCTGAT 60.905 55.000 12.31 0.00 0.00 2.90
54 55 0.904865 TGTCCTCGAGTGGCCTGATT 60.905 55.000 12.31 0.00 0.00 2.57
55 56 0.250513 GTCCTCGAGTGGCCTGATTT 59.749 55.000 12.31 0.00 0.00 2.17
56 57 0.984230 TCCTCGAGTGGCCTGATTTT 59.016 50.000 12.31 0.00 0.00 1.82
57 58 1.066143 TCCTCGAGTGGCCTGATTTTC 60.066 52.381 12.31 0.00 0.00 2.29
58 59 1.339055 CCTCGAGTGGCCTGATTTTCA 60.339 52.381 12.31 0.00 0.00 2.69
59 60 1.734465 CTCGAGTGGCCTGATTTTCAC 59.266 52.381 3.32 0.00 0.00 3.18
60 61 1.347707 TCGAGTGGCCTGATTTTCACT 59.652 47.619 3.32 0.00 42.37 3.41
61 62 2.154462 CGAGTGGCCTGATTTTCACTT 58.846 47.619 3.32 0.00 40.13 3.16
62 63 2.160417 CGAGTGGCCTGATTTTCACTTC 59.840 50.000 3.32 0.00 40.13 3.01
63 64 2.489722 GAGTGGCCTGATTTTCACTTCC 59.510 50.000 3.32 0.00 40.13 3.46
64 65 2.108952 AGTGGCCTGATTTTCACTTCCT 59.891 45.455 3.32 0.00 37.18 3.36
65 66 2.893489 GTGGCCTGATTTTCACTTCCTT 59.107 45.455 3.32 0.00 0.00 3.36
66 67 2.892852 TGGCCTGATTTTCACTTCCTTG 59.107 45.455 3.32 0.00 0.00 3.61
67 68 2.232208 GGCCTGATTTTCACTTCCTTGG 59.768 50.000 0.00 0.00 0.00 3.61
68 69 2.353109 GCCTGATTTTCACTTCCTTGGC 60.353 50.000 0.00 0.00 0.00 4.52
69 70 2.232208 CCTGATTTTCACTTCCTTGGCC 59.768 50.000 0.00 0.00 0.00 5.36
70 71 2.892852 CTGATTTTCACTTCCTTGGCCA 59.107 45.455 0.00 0.00 0.00 5.36
71 72 2.892852 TGATTTTCACTTCCTTGGCCAG 59.107 45.455 5.11 0.00 0.00 4.85
72 73 2.746279 TTTTCACTTCCTTGGCCAGA 57.254 45.000 5.11 0.00 0.00 3.86
73 74 2.978156 TTTCACTTCCTTGGCCAGAT 57.022 45.000 5.11 0.00 0.00 2.90
74 75 2.496899 TTCACTTCCTTGGCCAGATC 57.503 50.000 5.11 0.00 0.00 2.75
75 76 0.620556 TCACTTCCTTGGCCAGATCC 59.379 55.000 5.11 0.00 0.00 3.36
76 77 0.394899 CACTTCCTTGGCCAGATCCC 60.395 60.000 5.11 0.00 0.00 3.85
77 78 0.846427 ACTTCCTTGGCCAGATCCCA 60.846 55.000 5.11 0.00 0.00 4.37
78 79 0.106819 CTTCCTTGGCCAGATCCCAG 60.107 60.000 5.11 0.00 33.13 4.45
79 80 1.574526 TTCCTTGGCCAGATCCCAGG 61.575 60.000 12.07 12.07 33.13 4.45
85 86 4.201122 CCAGATCCCAGGCTGCCC 62.201 72.222 16.57 0.00 0.00 5.36
86 87 3.414193 CAGATCCCAGGCTGCCCA 61.414 66.667 16.57 0.00 0.00 5.36
87 88 3.415087 AGATCCCAGGCTGCCCAC 61.415 66.667 16.57 0.43 0.00 4.61
88 89 3.731728 GATCCCAGGCTGCCCACA 61.732 66.667 16.57 0.00 0.00 4.17
89 90 3.025599 ATCCCAGGCTGCCCACAT 61.026 61.111 16.57 0.00 0.00 3.21
90 91 3.369410 ATCCCAGGCTGCCCACATG 62.369 63.158 16.57 6.88 0.00 3.21
91 92 4.371417 CCCAGGCTGCCCACATGT 62.371 66.667 16.57 0.00 0.00 3.21
92 93 2.283388 CCAGGCTGCCCACATGTT 60.283 61.111 16.57 0.00 0.00 2.71
93 94 1.909781 CCAGGCTGCCCACATGTTT 60.910 57.895 16.57 0.00 0.00 2.83
94 95 1.588082 CAGGCTGCCCACATGTTTC 59.412 57.895 16.57 0.00 0.00 2.78
95 96 0.896940 CAGGCTGCCCACATGTTTCT 60.897 55.000 16.57 0.00 0.00 2.52
96 97 0.896940 AGGCTGCCCACATGTTTCTG 60.897 55.000 16.57 0.00 0.00 3.02
97 98 0.895100 GGCTGCCCACATGTTTCTGA 60.895 55.000 7.66 0.00 0.00 3.27
98 99 0.961019 GCTGCCCACATGTTTCTGAA 59.039 50.000 0.00 0.00 0.00 3.02
99 100 1.068055 GCTGCCCACATGTTTCTGAAG 60.068 52.381 0.00 0.00 0.00 3.02
100 101 2.507484 CTGCCCACATGTTTCTGAAGA 58.493 47.619 0.00 0.00 0.00 2.87
101 102 2.886523 CTGCCCACATGTTTCTGAAGAA 59.113 45.455 0.00 0.00 0.00 2.52
102 103 2.622942 TGCCCACATGTTTCTGAAGAAC 59.377 45.455 0.00 0.00 33.13 3.01
103 104 2.029918 GCCCACATGTTTCTGAAGAACC 60.030 50.000 0.00 0.00 33.13 3.62
104 105 3.221771 CCCACATGTTTCTGAAGAACCA 58.778 45.455 0.00 0.00 33.13 3.67
105 106 3.254166 CCCACATGTTTCTGAAGAACCAG 59.746 47.826 0.00 0.00 30.09 4.00
106 107 3.885297 CCACATGTTTCTGAAGAACCAGT 59.115 43.478 0.00 0.00 30.09 4.00
107 108 5.063204 CCACATGTTTCTGAAGAACCAGTA 58.937 41.667 0.00 0.00 30.09 2.74
108 109 5.707298 CCACATGTTTCTGAAGAACCAGTAT 59.293 40.000 0.00 0.00 30.09 2.12
109 110 6.207417 CCACATGTTTCTGAAGAACCAGTATT 59.793 38.462 0.00 0.00 30.09 1.89
110 111 7.080099 CACATGTTTCTGAAGAACCAGTATTG 58.920 38.462 0.00 0.00 30.09 1.90
122 123 2.550978 CCAGTATTGGCTGTAGGTTCG 58.449 52.381 0.00 0.00 37.73 3.95
123 124 2.550978 CAGTATTGGCTGTAGGTTCGG 58.449 52.381 0.00 0.00 0.00 4.30
124 125 2.093658 CAGTATTGGCTGTAGGTTCGGT 60.094 50.000 0.00 0.00 0.00 4.69
125 126 2.167900 AGTATTGGCTGTAGGTTCGGTC 59.832 50.000 0.00 0.00 0.00 4.79
126 127 0.252197 ATTGGCTGTAGGTTCGGTCC 59.748 55.000 0.00 0.00 0.00 4.46
127 128 2.162338 TTGGCTGTAGGTTCGGTCCG 62.162 60.000 4.39 4.39 0.00 4.79
128 129 2.643232 GGCTGTAGGTTCGGTCCGT 61.643 63.158 11.88 0.00 0.00 4.69
129 130 1.445582 GCTGTAGGTTCGGTCCGTG 60.446 63.158 11.88 0.00 0.00 4.94
130 131 1.962144 CTGTAGGTTCGGTCCGTGT 59.038 57.895 11.88 0.00 0.00 4.49
131 132 0.388134 CTGTAGGTTCGGTCCGTGTG 60.388 60.000 11.88 0.00 0.00 3.82
132 133 0.822944 TGTAGGTTCGGTCCGTGTGA 60.823 55.000 11.88 0.00 0.00 3.58
133 134 0.314935 GTAGGTTCGGTCCGTGTGAA 59.685 55.000 11.88 0.00 0.00 3.18
134 135 0.314935 TAGGTTCGGTCCGTGTGAAC 59.685 55.000 11.88 8.06 40.90 3.18
135 136 3.633951 GTTCGGTCCGTGTGAACC 58.366 61.111 11.88 0.00 36.79 3.62
136 137 1.957695 GTTCGGTCCGTGTGAACCC 60.958 63.158 11.88 0.00 36.79 4.11
137 138 2.135581 TTCGGTCCGTGTGAACCCT 61.136 57.895 11.88 0.00 0.00 4.34
138 139 0.827089 TTCGGTCCGTGTGAACCCTA 60.827 55.000 11.88 0.00 0.00 3.53
139 140 1.214589 CGGTCCGTGTGAACCCTAG 59.785 63.158 2.08 0.00 0.00 3.02
140 141 1.079336 GGTCCGTGTGAACCCTAGC 60.079 63.158 0.00 0.00 0.00 3.42
141 142 1.542187 GGTCCGTGTGAACCCTAGCT 61.542 60.000 0.00 0.00 0.00 3.32
142 143 1.180029 GTCCGTGTGAACCCTAGCTA 58.820 55.000 0.00 0.00 0.00 3.32
143 144 1.755380 GTCCGTGTGAACCCTAGCTAT 59.245 52.381 0.00 0.00 0.00 2.97
144 145 1.754803 TCCGTGTGAACCCTAGCTATG 59.245 52.381 0.00 0.00 0.00 2.23
145 146 1.202533 CCGTGTGAACCCTAGCTATGG 60.203 57.143 13.07 13.07 0.00 2.74
146 147 1.806623 CGTGTGAACCCTAGCTATGGC 60.807 57.143 14.43 0.00 39.06 4.40
147 148 0.837272 TGTGAACCCTAGCTATGGCC 59.163 55.000 14.43 0.00 39.73 5.36
148 149 0.837272 GTGAACCCTAGCTATGGCCA 59.163 55.000 8.56 8.56 39.73 5.36
149 150 1.421646 GTGAACCCTAGCTATGGCCAT 59.578 52.381 24.45 24.45 39.73 4.40
150 151 1.699634 TGAACCCTAGCTATGGCCATC 59.300 52.381 24.80 9.22 39.73 3.51
151 152 1.003696 GAACCCTAGCTATGGCCATCC 59.996 57.143 24.80 14.93 39.73 3.51
160 161 4.217035 TGGCCATCCAACGATTCG 57.783 55.556 0.00 4.14 39.99 3.34
161 162 2.112198 TGGCCATCCAACGATTCGC 61.112 57.895 0.00 0.00 39.99 4.70
162 163 2.715624 GCCATCCAACGATTCGCC 59.284 61.111 5.86 0.00 0.00 5.54
163 164 1.819632 GCCATCCAACGATTCGCCT 60.820 57.895 5.86 0.00 0.00 5.52
164 165 1.776034 GCCATCCAACGATTCGCCTC 61.776 60.000 5.86 0.00 0.00 4.70
165 166 1.160329 CCATCCAACGATTCGCCTCC 61.160 60.000 5.86 0.00 0.00 4.30
166 167 0.179073 CATCCAACGATTCGCCTCCT 60.179 55.000 5.86 0.00 0.00 3.69
167 168 0.105039 ATCCAACGATTCGCCTCCTC 59.895 55.000 5.86 0.00 0.00 3.71
168 169 1.521681 CCAACGATTCGCCTCCTCC 60.522 63.158 5.86 0.00 0.00 4.30
169 170 1.218047 CAACGATTCGCCTCCTCCA 59.782 57.895 5.86 0.00 0.00 3.86
170 171 0.391130 CAACGATTCGCCTCCTCCAA 60.391 55.000 5.86 0.00 0.00 3.53
171 172 0.323629 AACGATTCGCCTCCTCCAAA 59.676 50.000 5.86 0.00 0.00 3.28
172 173 0.323629 ACGATTCGCCTCCTCCAAAA 59.676 50.000 5.86 0.00 0.00 2.44
173 174 1.009829 CGATTCGCCTCCTCCAAAAG 58.990 55.000 0.00 0.00 0.00 2.27
174 175 0.735471 GATTCGCCTCCTCCAAAAGC 59.265 55.000 0.00 0.00 0.00 3.51
175 176 0.329596 ATTCGCCTCCTCCAAAAGCT 59.670 50.000 0.00 0.00 0.00 3.74
176 177 0.321653 TTCGCCTCCTCCAAAAGCTC 60.322 55.000 0.00 0.00 0.00 4.09
177 178 1.194781 TCGCCTCCTCCAAAAGCTCT 61.195 55.000 0.00 0.00 0.00 4.09
178 179 0.322008 CGCCTCCTCCAAAAGCTCTT 60.322 55.000 0.00 0.00 0.00 2.85
179 180 1.458398 GCCTCCTCCAAAAGCTCTTC 58.542 55.000 0.00 0.00 0.00 2.87
180 181 1.271597 GCCTCCTCCAAAAGCTCTTCA 60.272 52.381 0.00 0.00 0.00 3.02
181 182 2.620108 GCCTCCTCCAAAAGCTCTTCAT 60.620 50.000 0.00 0.00 0.00 2.57
182 183 3.277715 CCTCCTCCAAAAGCTCTTCATC 58.722 50.000 0.00 0.00 0.00 2.92
183 184 3.277715 CTCCTCCAAAAGCTCTTCATCC 58.722 50.000 0.00 0.00 0.00 3.51
184 185 2.915604 TCCTCCAAAAGCTCTTCATCCT 59.084 45.455 0.00 0.00 0.00 3.24
185 186 3.054802 TCCTCCAAAAGCTCTTCATCCTC 60.055 47.826 0.00 0.00 0.00 3.71
186 187 2.935201 CTCCAAAAGCTCTTCATCCTCG 59.065 50.000 0.00 0.00 0.00 4.63
187 188 2.567169 TCCAAAAGCTCTTCATCCTCGA 59.433 45.455 0.00 0.00 0.00 4.04
188 189 3.198635 TCCAAAAGCTCTTCATCCTCGAT 59.801 43.478 0.00 0.00 0.00 3.59
189 190 3.559242 CCAAAAGCTCTTCATCCTCGATC 59.441 47.826 0.00 0.00 0.00 3.69
190 191 4.186926 CAAAAGCTCTTCATCCTCGATCA 58.813 43.478 0.00 0.00 0.00 2.92
191 192 3.451141 AAGCTCTTCATCCTCGATCAC 57.549 47.619 0.00 0.00 0.00 3.06
192 193 2.665165 AGCTCTTCATCCTCGATCACT 58.335 47.619 0.00 0.00 0.00 3.41
193 194 3.826524 AGCTCTTCATCCTCGATCACTA 58.173 45.455 0.00 0.00 0.00 2.74
194 195 3.568007 AGCTCTTCATCCTCGATCACTAC 59.432 47.826 0.00 0.00 0.00 2.73
195 196 3.316588 GCTCTTCATCCTCGATCACTACA 59.683 47.826 0.00 0.00 0.00 2.74
196 197 4.022416 GCTCTTCATCCTCGATCACTACAT 60.022 45.833 0.00 0.00 0.00 2.29
197 198 5.697473 TCTTCATCCTCGATCACTACATC 57.303 43.478 0.00 0.00 0.00 3.06
198 199 4.520874 TCTTCATCCTCGATCACTACATCC 59.479 45.833 0.00 0.00 0.00 3.51
199 200 4.105754 TCATCCTCGATCACTACATCCT 57.894 45.455 0.00 0.00 0.00 3.24
200 201 3.823304 TCATCCTCGATCACTACATCCTG 59.177 47.826 0.00 0.00 0.00 3.86
201 202 2.587522 TCCTCGATCACTACATCCTGG 58.412 52.381 0.00 0.00 0.00 4.45
202 203 2.174854 TCCTCGATCACTACATCCTGGA 59.825 50.000 0.00 0.00 0.00 3.86
203 204 2.556189 CCTCGATCACTACATCCTGGAG 59.444 54.545 1.52 0.00 33.50 3.86
204 205 3.481453 CTCGATCACTACATCCTGGAGA 58.519 50.000 1.52 0.00 31.17 3.71
205 206 4.078537 CTCGATCACTACATCCTGGAGAT 58.921 47.826 1.52 0.00 31.17 2.75
206 207 4.075682 TCGATCACTACATCCTGGAGATC 58.924 47.826 1.52 6.89 31.17 2.75
207 208 3.120025 CGATCACTACATCCTGGAGATCG 60.120 52.174 21.52 21.52 44.51 3.69
208 209 2.587522 TCACTACATCCTGGAGATCGG 58.412 52.381 1.52 0.00 31.17 4.18
209 210 1.000283 CACTACATCCTGGAGATCGGC 60.000 57.143 1.52 0.00 31.17 5.54
210 211 0.605589 CTACATCCTGGAGATCGGCC 59.394 60.000 1.52 0.00 30.59 6.13
211 212 0.188587 TACATCCTGGAGATCGGCCT 59.811 55.000 0.00 0.00 30.59 5.19
212 213 1.118356 ACATCCTGGAGATCGGCCTC 61.118 60.000 0.00 0.00 30.59 4.70
220 221 2.162319 GAGATCGGCCTCCTTCAATC 57.838 55.000 0.00 0.00 0.00 2.67
221 222 0.761802 AGATCGGCCTCCTTCAATCC 59.238 55.000 0.00 0.00 0.00 3.01
222 223 0.469917 GATCGGCCTCCTTCAATCCA 59.530 55.000 0.00 0.00 0.00 3.41
223 224 0.918983 ATCGGCCTCCTTCAATCCAA 59.081 50.000 0.00 0.00 0.00 3.53
224 225 0.253044 TCGGCCTCCTTCAATCCAAG 59.747 55.000 0.00 0.00 0.00 3.61
225 226 1.379642 CGGCCTCCTTCAATCCAAGC 61.380 60.000 0.00 0.00 0.00 4.01
226 227 0.033699 GGCCTCCTTCAATCCAAGCT 60.034 55.000 0.00 0.00 0.00 3.74
227 228 1.387539 GCCTCCTTCAATCCAAGCTC 58.612 55.000 0.00 0.00 0.00 4.09
228 229 2.021208 GCCTCCTTCAATCCAAGCTCC 61.021 57.143 0.00 0.00 0.00 4.70
229 230 1.563410 CCTCCTTCAATCCAAGCTCCT 59.437 52.381 0.00 0.00 0.00 3.69
230 231 2.421248 CCTCCTTCAATCCAAGCTCCTC 60.421 54.545 0.00 0.00 0.00 3.71
231 232 1.561542 TCCTTCAATCCAAGCTCCTCC 59.438 52.381 0.00 0.00 0.00 4.30
232 233 1.283029 CCTTCAATCCAAGCTCCTCCA 59.717 52.381 0.00 0.00 0.00 3.86
233 234 2.091994 CCTTCAATCCAAGCTCCTCCAT 60.092 50.000 0.00 0.00 0.00 3.41
234 235 3.212685 CTTCAATCCAAGCTCCTCCATC 58.787 50.000 0.00 0.00 0.00 3.51
235 236 2.199208 TCAATCCAAGCTCCTCCATCA 58.801 47.619 0.00 0.00 0.00 3.07
236 237 2.781757 TCAATCCAAGCTCCTCCATCAT 59.218 45.455 0.00 0.00 0.00 2.45
237 238 3.203710 TCAATCCAAGCTCCTCCATCATT 59.796 43.478 0.00 0.00 0.00 2.57
238 239 2.723322 TCCAAGCTCCTCCATCATTG 57.277 50.000 0.00 0.00 0.00 2.82
239 240 1.030457 CCAAGCTCCTCCATCATTGC 58.970 55.000 0.00 0.00 0.00 3.56
240 241 1.030457 CAAGCTCCTCCATCATTGCC 58.970 55.000 0.00 0.00 0.00 4.52
241 242 0.924823 AAGCTCCTCCATCATTGCCT 59.075 50.000 0.00 0.00 0.00 4.75
242 243 0.473326 AGCTCCTCCATCATTGCCTC 59.527 55.000 0.00 0.00 0.00 4.70
243 244 0.473326 GCTCCTCCATCATTGCCTCT 59.527 55.000 0.00 0.00 0.00 3.69
244 245 1.696336 GCTCCTCCATCATTGCCTCTA 59.304 52.381 0.00 0.00 0.00 2.43
245 246 2.289569 GCTCCTCCATCATTGCCTCTAG 60.290 54.545 0.00 0.00 0.00 2.43
246 247 2.302445 CTCCTCCATCATTGCCTCTAGG 59.698 54.545 0.00 0.00 38.53 3.02
247 248 2.053244 CCTCCATCATTGCCTCTAGGT 58.947 52.381 0.00 0.00 37.57 3.08
248 249 2.038295 CCTCCATCATTGCCTCTAGGTC 59.962 54.545 0.00 0.00 37.57 3.85
249 250 2.038295 CTCCATCATTGCCTCTAGGTCC 59.962 54.545 0.00 0.00 37.57 4.46
250 251 1.270518 CCATCATTGCCTCTAGGTCCG 60.271 57.143 0.00 0.00 37.57 4.79
251 252 1.688735 CATCATTGCCTCTAGGTCCGA 59.311 52.381 0.00 0.00 37.57 4.55
252 253 1.112113 TCATTGCCTCTAGGTCCGAC 58.888 55.000 0.00 0.00 37.57 4.79
253 254 0.249073 CATTGCCTCTAGGTCCGACG 60.249 60.000 0.00 0.00 37.57 5.12
254 255 0.683504 ATTGCCTCTAGGTCCGACGT 60.684 55.000 0.00 0.00 37.57 4.34
255 256 1.592400 TTGCCTCTAGGTCCGACGTG 61.592 60.000 0.00 0.00 37.57 4.49
256 257 1.748122 GCCTCTAGGTCCGACGTGA 60.748 63.158 0.00 0.00 37.57 4.35
257 258 1.310933 GCCTCTAGGTCCGACGTGAA 61.311 60.000 0.00 0.00 37.57 3.18
258 259 0.733729 CCTCTAGGTCCGACGTGAAG 59.266 60.000 0.00 1.76 0.00 3.02
259 260 0.099082 CTCTAGGTCCGACGTGAAGC 59.901 60.000 0.00 0.00 0.00 3.86
260 261 1.139095 CTAGGTCCGACGTGAAGCC 59.861 63.158 0.00 0.00 0.00 4.35
261 262 2.594119 CTAGGTCCGACGTGAAGCCG 62.594 65.000 0.00 0.00 0.00 5.52
267 268 4.814294 GACGTGAAGCCGCCCGAT 62.814 66.667 0.00 0.00 0.00 4.18
268 269 4.814294 ACGTGAAGCCGCCCGATC 62.814 66.667 0.00 0.00 0.00 3.69
270 271 4.467084 GTGAAGCCGCCCGATCCA 62.467 66.667 0.00 0.00 0.00 3.41
271 272 3.711814 TGAAGCCGCCCGATCCAA 61.712 61.111 0.00 0.00 0.00 3.53
272 273 2.437716 GAAGCCGCCCGATCCAAA 60.438 61.111 0.00 0.00 0.00 3.28
273 274 2.034999 AAGCCGCCCGATCCAAAA 59.965 55.556 0.00 0.00 0.00 2.44
274 275 1.993369 GAAGCCGCCCGATCCAAAAG 61.993 60.000 0.00 0.00 0.00 2.27
275 276 4.193334 GCCGCCCGATCCAAAAGC 62.193 66.667 0.00 0.00 0.00 3.51
276 277 2.438434 CCGCCCGATCCAAAAGCT 60.438 61.111 0.00 0.00 0.00 3.74
277 278 2.764314 CCGCCCGATCCAAAAGCTG 61.764 63.158 0.00 0.00 0.00 4.24
278 279 2.040544 CGCCCGATCCAAAAGCTGT 61.041 57.895 0.00 0.00 0.00 4.40
279 280 1.586154 CGCCCGATCCAAAAGCTGTT 61.586 55.000 0.00 0.00 0.00 3.16
280 281 0.171231 GCCCGATCCAAAAGCTGTTC 59.829 55.000 0.00 0.00 0.00 3.18
281 282 1.533625 CCCGATCCAAAAGCTGTTCA 58.466 50.000 0.00 0.00 0.00 3.18
282 283 1.200020 CCCGATCCAAAAGCTGTTCAC 59.800 52.381 0.00 0.00 0.00 3.18
283 284 1.200020 CCGATCCAAAAGCTGTTCACC 59.800 52.381 0.00 0.00 0.00 4.02
284 285 1.200020 CGATCCAAAAGCTGTTCACCC 59.800 52.381 0.00 0.00 0.00 4.61
285 286 2.238521 GATCCAAAAGCTGTTCACCCA 58.761 47.619 0.00 0.00 0.00 4.51
286 287 2.380064 TCCAAAAGCTGTTCACCCAT 57.620 45.000 0.00 0.00 0.00 4.00
287 288 3.517296 TCCAAAAGCTGTTCACCCATA 57.483 42.857 0.00 0.00 0.00 2.74
288 289 3.838565 TCCAAAAGCTGTTCACCCATAA 58.161 40.909 0.00 0.00 0.00 1.90
289 290 4.415596 TCCAAAAGCTGTTCACCCATAAT 58.584 39.130 0.00 0.00 0.00 1.28
290 291 4.837860 TCCAAAAGCTGTTCACCCATAATT 59.162 37.500 0.00 0.00 0.00 1.40
291 292 5.047377 TCCAAAAGCTGTTCACCCATAATTC 60.047 40.000 0.00 0.00 0.00 2.17
292 293 5.047092 CCAAAAGCTGTTCACCCATAATTCT 60.047 40.000 0.00 0.00 0.00 2.40
293 294 5.904362 AAAGCTGTTCACCCATAATTCTC 57.096 39.130 0.00 0.00 0.00 2.87
294 295 4.851639 AGCTGTTCACCCATAATTCTCT 57.148 40.909 0.00 0.00 0.00 3.10
295 296 5.184892 AGCTGTTCACCCATAATTCTCTT 57.815 39.130 0.00 0.00 0.00 2.85
296 297 4.946157 AGCTGTTCACCCATAATTCTCTTG 59.054 41.667 0.00 0.00 0.00 3.02
297 298 4.439289 GCTGTTCACCCATAATTCTCTTGC 60.439 45.833 0.00 0.00 0.00 4.01
298 299 4.016444 TGTTCACCCATAATTCTCTTGCC 58.984 43.478 0.00 0.00 0.00 4.52
299 300 3.297134 TCACCCATAATTCTCTTGCCC 57.703 47.619 0.00 0.00 0.00 5.36
300 301 1.949525 CACCCATAATTCTCTTGCCCG 59.050 52.381 0.00 0.00 0.00 6.13
301 302 1.843851 ACCCATAATTCTCTTGCCCGA 59.156 47.619 0.00 0.00 0.00 5.14
302 303 2.158755 ACCCATAATTCTCTTGCCCGAG 60.159 50.000 0.00 0.00 0.00 4.63
303 304 2.498167 CCATAATTCTCTTGCCCGAGG 58.502 52.381 0.21 0.00 0.00 4.63
304 305 2.158755 CCATAATTCTCTTGCCCGAGGT 60.159 50.000 0.21 0.00 0.00 3.85
305 306 3.545703 CATAATTCTCTTGCCCGAGGTT 58.454 45.455 0.21 0.00 0.00 3.50
306 307 2.586648 AATTCTCTTGCCCGAGGTTT 57.413 45.000 0.21 0.00 0.00 3.27
307 308 2.115343 ATTCTCTTGCCCGAGGTTTC 57.885 50.000 0.21 0.00 0.00 2.78
308 309 1.056660 TTCTCTTGCCCGAGGTTTCT 58.943 50.000 0.21 0.00 0.00 2.52
309 310 1.056660 TCTCTTGCCCGAGGTTTCTT 58.943 50.000 0.21 0.00 0.00 2.52
310 311 1.002087 TCTCTTGCCCGAGGTTTCTTC 59.998 52.381 0.21 0.00 0.00 2.87
311 312 0.762418 TCTTGCCCGAGGTTTCTTCA 59.238 50.000 0.00 0.00 0.00 3.02
312 313 1.142060 TCTTGCCCGAGGTTTCTTCAA 59.858 47.619 0.00 0.00 0.00 2.69
313 314 2.162681 CTTGCCCGAGGTTTCTTCAAT 58.837 47.619 0.00 0.00 0.00 2.57
314 315 1.821216 TGCCCGAGGTTTCTTCAATC 58.179 50.000 0.00 0.00 0.00 2.67
315 316 1.351017 TGCCCGAGGTTTCTTCAATCT 59.649 47.619 0.00 0.00 0.00 2.40
316 317 1.740025 GCCCGAGGTTTCTTCAATCTG 59.260 52.381 0.00 0.00 0.00 2.90
317 318 1.740025 CCCGAGGTTTCTTCAATCTGC 59.260 52.381 0.00 0.00 0.00 4.26
318 319 2.426522 CCGAGGTTTCTTCAATCTGCA 58.573 47.619 0.00 0.00 0.00 4.41
319 320 2.417933 CCGAGGTTTCTTCAATCTGCAG 59.582 50.000 7.63 7.63 0.00 4.41
320 321 2.417933 CGAGGTTTCTTCAATCTGCAGG 59.582 50.000 15.13 0.00 0.00 4.85
321 322 2.163211 GAGGTTTCTTCAATCTGCAGGC 59.837 50.000 15.13 0.00 0.00 4.85
322 323 1.135575 GGTTTCTTCAATCTGCAGGCG 60.136 52.381 15.13 2.57 0.00 5.52
323 324 1.537202 GTTTCTTCAATCTGCAGGCGT 59.463 47.619 15.13 0.00 0.00 5.68
324 325 1.896220 TTCTTCAATCTGCAGGCGTT 58.104 45.000 15.13 3.97 0.00 4.84
325 326 1.896220 TCTTCAATCTGCAGGCGTTT 58.104 45.000 15.13 0.03 0.00 3.60
326 327 1.536766 TCTTCAATCTGCAGGCGTTTG 59.463 47.619 15.13 12.59 0.00 2.93
327 328 0.597568 TTCAATCTGCAGGCGTTTGG 59.402 50.000 15.13 0.00 0.00 3.28
328 329 0.250684 TCAATCTGCAGGCGTTTGGA 60.251 50.000 15.13 0.00 0.00 3.53
329 330 0.813184 CAATCTGCAGGCGTTTGGAT 59.187 50.000 15.13 0.00 0.00 3.41
330 331 1.098050 AATCTGCAGGCGTTTGGATC 58.902 50.000 15.13 0.00 0.00 3.36
331 332 0.749454 ATCTGCAGGCGTTTGGATCC 60.749 55.000 15.13 4.20 0.00 3.36
332 333 2.361104 TGCAGGCGTTTGGATCCC 60.361 61.111 9.90 0.00 0.00 3.85
333 334 2.361104 GCAGGCGTTTGGATCCCA 60.361 61.111 9.90 0.00 0.00 4.37
334 335 2.409870 GCAGGCGTTTGGATCCCAG 61.410 63.158 9.90 0.00 33.81 4.45
335 336 2.044946 AGGCGTTTGGATCCCAGC 60.045 61.111 9.90 9.17 33.81 4.85
336 337 3.140814 GGCGTTTGGATCCCAGCC 61.141 66.667 17.26 17.26 35.70 4.85
337 338 3.140814 GCGTTTGGATCCCAGCCC 61.141 66.667 9.90 0.00 33.81 5.19
338 339 2.440247 CGTTTGGATCCCAGCCCC 60.440 66.667 9.90 0.00 33.81 5.80
339 340 2.042944 GTTTGGATCCCAGCCCCC 60.043 66.667 9.90 0.00 33.81 5.40
353 354 3.306379 CCCCCTTGTCCCTACGTC 58.694 66.667 0.00 0.00 0.00 4.34
354 355 2.718073 CCCCCTTGTCCCTACGTCG 61.718 68.421 0.00 0.00 0.00 5.12
355 356 2.183555 CCCTTGTCCCTACGTCGC 59.816 66.667 0.00 0.00 0.00 5.19
356 357 2.183555 CCTTGTCCCTACGTCGCC 59.816 66.667 0.00 0.00 0.00 5.54
357 358 2.202570 CTTGTCCCTACGTCGCCG 60.203 66.667 0.00 0.00 40.83 6.46
368 369 4.072088 GTCGCCGTTTGACGCCAG 62.072 66.667 0.00 0.00 40.91 4.85
372 373 3.777925 CCGTTTGACGCCAGCGAG 61.778 66.667 20.32 2.69 40.91 5.03
373 374 2.733218 CGTTTGACGCCAGCGAGA 60.733 61.111 20.32 1.05 42.83 4.04
697 698 5.977489 TCCTCAACTAGTGATTTCGAGAA 57.023 39.130 0.00 0.00 35.07 2.87
698 699 6.531503 TCCTCAACTAGTGATTTCGAGAAT 57.468 37.500 0.00 0.00 35.07 2.40
699 700 6.333416 TCCTCAACTAGTGATTTCGAGAATG 58.667 40.000 0.00 0.00 35.07 2.67
700 701 6.071334 TCCTCAACTAGTGATTTCGAGAATGT 60.071 38.462 0.00 0.00 35.07 2.71
701 702 7.122204 TCCTCAACTAGTGATTTCGAGAATGTA 59.878 37.037 0.00 0.00 35.07 2.29
702 703 7.923344 CCTCAACTAGTGATTTCGAGAATGTAT 59.077 37.037 0.00 0.00 35.07 2.29
703 704 8.634475 TCAACTAGTGATTTCGAGAATGTATG 57.366 34.615 0.00 0.00 0.00 2.39
704 705 7.222805 TCAACTAGTGATTTCGAGAATGTATGC 59.777 37.037 0.00 0.00 0.00 3.14
705 706 6.810911 ACTAGTGATTTCGAGAATGTATGCT 58.189 36.000 0.00 0.00 0.00 3.79
706 707 5.980698 AGTGATTTCGAGAATGTATGCTG 57.019 39.130 0.00 0.00 0.00 4.41
733 734 6.798482 TGCAAAATTCAGCTCGATTTATCAT 58.202 32.000 4.68 0.00 0.00 2.45
784 795 3.376859 CGTTGTATGGGCTTTGCAGATTA 59.623 43.478 0.00 0.00 0.00 1.75
869 880 2.068821 AGATCCAGGCCGCACTCAT 61.069 57.895 0.00 0.00 0.00 2.90
1014 1029 0.895559 CCCAACTCTGGAACTTGGCC 60.896 60.000 0.00 0.00 46.92 5.36
1019 1034 0.671781 CTCTGGAACTTGGCCTGTCG 60.672 60.000 3.32 0.00 0.00 4.35
1411 6561 0.879765 CTTGAGAAGCACAAGCCAGG 59.120 55.000 0.00 0.00 43.56 4.45
1793 6979 5.461407 CGTCATACAGATCAAAGACATGGAG 59.539 44.000 0.00 0.00 0.00 3.86
2324 7538 2.060050 AGAGAGGTCATAGTCCGTGG 57.940 55.000 0.00 0.00 0.00 4.94
2325 7539 0.386113 GAGAGGTCATAGTCCGTGGC 59.614 60.000 0.00 0.00 0.00 5.01
2487 7710 2.036556 CGCAAGCGTCAAAGTTGATT 57.963 45.000 6.25 0.00 39.73 2.57
2577 7801 4.098654 TCTTTTGGGAGAATTTCAAACGCA 59.901 37.500 0.00 2.31 31.21 5.24
2595 7819 2.545526 CGCAAGAACTATTCATCGGCAT 59.454 45.455 0.00 0.00 43.02 4.40
2655 7886 1.600485 CGTTTGTATATCCCCAACCGC 59.400 52.381 0.00 0.00 0.00 5.68
2659 7890 1.131928 GTATATCCCCAACCGCCCCT 61.132 60.000 0.00 0.00 0.00 4.79
2666 7897 4.579384 CAACCGCCCCTGGTGTGT 62.579 66.667 0.00 0.00 42.89 3.72
2713 7944 9.765795 AATAAGTGTTTGATAGTATCTGGTAGC 57.234 33.333 11.40 0.00 0.00 3.58
2714 7945 6.791867 AGTGTTTGATAGTATCTGGTAGCA 57.208 37.500 11.40 0.00 0.00 3.49
2715 7946 6.810911 AGTGTTTGATAGTATCTGGTAGCAG 58.189 40.000 15.93 15.93 0.00 4.24
2716 7947 5.986135 GTGTTTGATAGTATCTGGTAGCAGG 59.014 44.000 21.22 3.75 0.00 4.85
2717 7948 5.661312 TGTTTGATAGTATCTGGTAGCAGGT 59.339 40.000 21.22 17.35 0.00 4.00
2718 7949 6.183360 TGTTTGATAGTATCTGGTAGCAGGTC 60.183 42.308 21.22 11.78 0.00 3.85
2719 7950 4.408276 TGATAGTATCTGGTAGCAGGTCC 58.592 47.826 21.22 5.83 0.00 4.46
2721 7952 3.406512 AGTATCTGGTAGCAGGTCCTT 57.593 47.619 21.22 1.43 0.00 3.36
2722 7953 3.301274 AGTATCTGGTAGCAGGTCCTTC 58.699 50.000 21.22 6.76 0.00 3.46
2723 7954 2.559381 ATCTGGTAGCAGGTCCTTCT 57.441 50.000 21.22 0.00 0.00 2.85
2724 7955 1.853963 TCTGGTAGCAGGTCCTTCTC 58.146 55.000 21.22 0.00 0.00 2.87
2725 7956 1.359474 TCTGGTAGCAGGTCCTTCTCT 59.641 52.381 21.22 0.00 0.00 3.10
2726 7957 2.183679 CTGGTAGCAGGTCCTTCTCTT 58.816 52.381 14.29 0.00 0.00 2.85
2729 7960 1.552792 GTAGCAGGTCCTTCTCTTGCT 59.447 52.381 6.33 6.33 35.24 3.91
2732 7963 2.027653 AGCAGGTCCTTCTCTTGCTAAC 60.028 50.000 0.00 0.00 0.00 2.34
2733 7964 2.289694 GCAGGTCCTTCTCTTGCTAACA 60.290 50.000 0.00 0.00 0.00 2.41
2735 7966 4.187694 CAGGTCCTTCTCTTGCTAACATC 58.812 47.826 0.00 0.00 0.00 3.06
2736 7967 4.081198 CAGGTCCTTCTCTTGCTAACATCT 60.081 45.833 0.00 0.00 0.00 2.90
2737 7968 4.081198 AGGTCCTTCTCTTGCTAACATCTG 60.081 45.833 0.00 0.00 0.00 2.90
2738 7969 4.187694 GTCCTTCTCTTGCTAACATCTGG 58.812 47.826 0.00 0.00 0.00 3.86
2739 7970 3.840666 TCCTTCTCTTGCTAACATCTGGT 59.159 43.478 0.00 0.00 0.00 4.00
2740 7971 4.081420 TCCTTCTCTTGCTAACATCTGGTC 60.081 45.833 0.00 0.00 0.00 4.02
2742 7973 5.486526 CTTCTCTTGCTAACATCTGGTCTT 58.513 41.667 0.00 0.00 0.00 3.01
2746 8038 7.044181 TCTCTTGCTAACATCTGGTCTTTATG 58.956 38.462 0.00 0.00 0.00 1.90
3055 8349 1.519455 GCGTCGACCTCCATTCTGG 60.519 63.158 10.58 0.00 39.43 3.86
3099 8393 7.922811 GGATTTATCCATCTTTGTGGTTTGATC 59.077 37.037 3.87 0.00 46.38 2.92
3123 8417 3.498774 AGTTCATTGGTTCAGCTGACT 57.501 42.857 18.03 4.35 0.00 3.41
3131 8425 1.762957 GGTTCAGCTGACTATGGCCTA 59.237 52.381 18.03 0.00 0.00 3.93
3143 8437 3.976654 ACTATGGCCTACATGTTCCATCT 59.023 43.478 22.30 11.65 40.82 2.90
3153 8447 7.106239 CCTACATGTTCCATCTGTATATTCCC 58.894 42.308 2.30 0.00 0.00 3.97
3156 8450 7.911651 ACATGTTCCATCTGTATATTCCCTAG 58.088 38.462 0.00 0.00 0.00 3.02
3170 8464 3.350219 TCCCTAGTCACTTTCCAATGC 57.650 47.619 0.00 0.00 0.00 3.56
3179 8473 3.006752 TCACTTTCCAATGCCATTTGTCC 59.993 43.478 0.00 0.00 0.00 4.02
3197 8491 1.835531 TCCGGAAAGTCACCCTTATCC 59.164 52.381 0.00 0.00 31.48 2.59
3198 8492 1.557832 CCGGAAAGTCACCCTTATCCA 59.442 52.381 0.00 0.00 33.49 3.41
3200 8494 2.629051 GGAAAGTCACCCTTATCCACG 58.371 52.381 0.00 0.00 33.80 4.94
3221 8518 4.082841 ACGTGCAAAAGCATCATCATGTAA 60.083 37.500 0.00 0.00 31.86 2.41
3222 8519 5.038683 CGTGCAAAAGCATCATCATGTAAT 58.961 37.500 0.00 0.00 31.86 1.89
3228 8525 9.304731 GCAAAAGCATCATCATGTAATAAAAGA 57.695 29.630 0.00 0.00 31.86 2.52
3362 8812 0.991146 TGCTTGCAGGGACCTTCATA 59.009 50.000 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.274167 CAGTTTGCATGCTTGGGTGAT 59.726 47.619 20.33 0.00 0.00 3.06
1 2 0.675083 CAGTTTGCATGCTTGGGTGA 59.325 50.000 20.33 0.00 0.00 4.02
2 3 0.947180 GCAGTTTGCATGCTTGGGTG 60.947 55.000 20.33 10.79 44.26 4.61
3 4 1.368579 GCAGTTTGCATGCTTGGGT 59.631 52.632 20.33 0.00 44.26 4.51
4 5 4.272100 GCAGTTTGCATGCTTGGG 57.728 55.556 20.33 5.94 44.26 4.12
13 14 1.062587 CCTGTATACGCTGCAGTTTGC 59.937 52.381 16.64 0.00 45.29 3.68
14 15 2.346803 ACCTGTATACGCTGCAGTTTG 58.653 47.619 16.64 8.36 35.96 2.93
15 16 2.742053 CAACCTGTATACGCTGCAGTTT 59.258 45.455 16.64 4.95 35.96 2.66
16 17 2.289444 ACAACCTGTATACGCTGCAGTT 60.289 45.455 16.64 5.35 35.96 3.16
17 18 1.275291 ACAACCTGTATACGCTGCAGT 59.725 47.619 16.64 0.00 35.96 4.40
18 19 1.927174 GACAACCTGTATACGCTGCAG 59.073 52.381 10.11 10.11 37.33 4.41
19 20 1.404986 GGACAACCTGTATACGCTGCA 60.405 52.381 0.00 0.00 0.00 4.41
20 21 1.134788 AGGACAACCTGTATACGCTGC 60.135 52.381 0.00 0.00 45.92 5.25
21 22 2.961526 AGGACAACCTGTATACGCTG 57.038 50.000 0.00 0.00 45.92 5.18
32 33 2.047179 GGCCACTCGAGGACAACC 60.047 66.667 18.41 6.92 36.38 3.77
33 34 1.374758 CAGGCCACTCGAGGACAAC 60.375 63.158 18.41 2.86 40.05 3.32
34 35 0.904865 ATCAGGCCACTCGAGGACAA 60.905 55.000 18.41 0.00 40.05 3.18
35 36 0.904865 AATCAGGCCACTCGAGGACA 60.905 55.000 18.41 0.00 40.05 4.02
36 37 0.250513 AAATCAGGCCACTCGAGGAC 59.749 55.000 18.41 2.19 36.73 3.85
37 38 0.984230 AAAATCAGGCCACTCGAGGA 59.016 50.000 18.41 3.13 0.00 3.71
38 39 1.339055 TGAAAATCAGGCCACTCGAGG 60.339 52.381 18.41 1.09 0.00 4.63
39 40 1.734465 GTGAAAATCAGGCCACTCGAG 59.266 52.381 11.84 11.84 0.00 4.04
40 41 1.347707 AGTGAAAATCAGGCCACTCGA 59.652 47.619 5.01 0.00 35.15 4.04
41 42 1.813513 AGTGAAAATCAGGCCACTCG 58.186 50.000 5.01 0.00 35.15 4.18
42 43 2.489722 GGAAGTGAAAATCAGGCCACTC 59.510 50.000 5.01 0.00 38.75 3.51
43 44 2.108952 AGGAAGTGAAAATCAGGCCACT 59.891 45.455 5.01 0.00 41.14 4.00
44 45 2.519013 AGGAAGTGAAAATCAGGCCAC 58.481 47.619 5.01 0.00 0.00 5.01
45 46 2.892852 CAAGGAAGTGAAAATCAGGCCA 59.107 45.455 5.01 0.00 0.00 5.36
46 47 2.232208 CCAAGGAAGTGAAAATCAGGCC 59.768 50.000 0.00 0.00 0.00 5.19
47 48 2.353109 GCCAAGGAAGTGAAAATCAGGC 60.353 50.000 0.00 0.00 0.00 4.85
48 49 2.232208 GGCCAAGGAAGTGAAAATCAGG 59.768 50.000 0.00 0.00 0.00 3.86
49 50 2.892852 TGGCCAAGGAAGTGAAAATCAG 59.107 45.455 0.61 0.00 0.00 2.90
50 51 2.892852 CTGGCCAAGGAAGTGAAAATCA 59.107 45.455 7.01 0.00 0.00 2.57
51 52 3.157087 TCTGGCCAAGGAAGTGAAAATC 58.843 45.455 7.01 0.00 0.00 2.17
52 53 3.243359 TCTGGCCAAGGAAGTGAAAAT 57.757 42.857 7.01 0.00 0.00 1.82
53 54 2.746279 TCTGGCCAAGGAAGTGAAAA 57.254 45.000 7.01 0.00 0.00 2.29
54 55 2.555227 GGATCTGGCCAAGGAAGTGAAA 60.555 50.000 7.01 0.00 0.00 2.69
55 56 1.004745 GGATCTGGCCAAGGAAGTGAA 59.995 52.381 7.01 0.00 0.00 3.18
56 57 0.620556 GGATCTGGCCAAGGAAGTGA 59.379 55.000 7.01 0.00 0.00 3.41
57 58 0.394899 GGGATCTGGCCAAGGAAGTG 60.395 60.000 7.01 0.00 0.00 3.16
58 59 0.846427 TGGGATCTGGCCAAGGAAGT 60.846 55.000 7.01 0.00 0.00 3.01
59 60 0.106819 CTGGGATCTGGCCAAGGAAG 60.107 60.000 7.01 0.00 0.00 3.46
60 61 2.001803 CTGGGATCTGGCCAAGGAA 58.998 57.895 7.01 0.00 0.00 3.36
61 62 3.745546 CTGGGATCTGGCCAAGGA 58.254 61.111 7.01 0.87 0.00 3.36
62 63 2.599597 CCTGGGATCTGGCCAAGG 59.400 66.667 7.01 5.55 42.69 3.61
68 69 4.201122 GGGCAGCCTGGGATCTGG 62.201 72.222 12.43 0.00 35.38 3.86
69 70 3.414193 TGGGCAGCCTGGGATCTG 61.414 66.667 12.43 0.00 0.00 2.90
70 71 3.415087 GTGGGCAGCCTGGGATCT 61.415 66.667 12.43 0.00 0.00 2.75
71 72 3.065787 ATGTGGGCAGCCTGGGATC 62.066 63.158 12.43 0.00 0.00 3.36
72 73 3.025599 ATGTGGGCAGCCTGGGAT 61.026 61.111 12.43 0.00 0.00 3.85
73 74 4.051167 CATGTGGGCAGCCTGGGA 62.051 66.667 12.43 0.00 0.00 4.37
74 75 3.892104 AACATGTGGGCAGCCTGGG 62.892 63.158 12.43 0.00 0.00 4.45
75 76 1.880819 GAAACATGTGGGCAGCCTGG 61.881 60.000 12.43 0.00 0.00 4.45
76 77 0.896940 AGAAACATGTGGGCAGCCTG 60.897 55.000 12.43 3.85 0.00 4.85
77 78 0.896940 CAGAAACATGTGGGCAGCCT 60.897 55.000 12.43 0.00 0.00 4.58
78 79 0.895100 TCAGAAACATGTGGGCAGCC 60.895 55.000 1.26 1.26 0.00 4.85
79 80 0.961019 TTCAGAAACATGTGGGCAGC 59.039 50.000 0.00 0.00 0.00 5.25
80 81 2.507484 TCTTCAGAAACATGTGGGCAG 58.493 47.619 0.00 0.00 0.00 4.85
81 82 2.622942 GTTCTTCAGAAACATGTGGGCA 59.377 45.455 0.00 0.00 35.58 5.36
82 83 2.029918 GGTTCTTCAGAAACATGTGGGC 60.030 50.000 0.00 0.00 41.25 5.36
83 84 3.221771 TGGTTCTTCAGAAACATGTGGG 58.778 45.455 3.01 0.00 45.85 4.61
90 91 4.762251 AGCCAATACTGGTTCTTCAGAAAC 59.238 41.667 0.00 0.00 45.53 2.78
91 92 4.761739 CAGCCAATACTGGTTCTTCAGAAA 59.238 41.667 0.00 0.00 45.53 2.52
92 93 4.202461 ACAGCCAATACTGGTTCTTCAGAA 60.202 41.667 0.00 0.00 45.53 3.02
93 94 3.327757 ACAGCCAATACTGGTTCTTCAGA 59.672 43.478 0.00 0.00 45.53 3.27
94 95 3.679389 ACAGCCAATACTGGTTCTTCAG 58.321 45.455 0.00 0.00 45.53 3.02
95 96 3.788227 ACAGCCAATACTGGTTCTTCA 57.212 42.857 0.00 0.00 45.53 3.02
96 97 4.192317 CCTACAGCCAATACTGGTTCTTC 58.808 47.826 0.00 0.00 45.53 2.87
97 98 3.587506 ACCTACAGCCAATACTGGTTCTT 59.412 43.478 0.00 0.00 45.53 2.52
98 99 3.182152 ACCTACAGCCAATACTGGTTCT 58.818 45.455 0.00 0.00 45.53 3.01
99 100 3.629142 ACCTACAGCCAATACTGGTTC 57.371 47.619 0.00 0.00 45.53 3.62
100 101 3.618997 CGAACCTACAGCCAATACTGGTT 60.619 47.826 0.00 0.00 45.53 3.67
101 102 2.093658 CGAACCTACAGCCAATACTGGT 60.094 50.000 0.00 0.00 45.53 4.00
102 103 2.550978 CGAACCTACAGCCAATACTGG 58.449 52.381 0.00 0.00 46.65 4.00
103 104 2.093658 ACCGAACCTACAGCCAATACTG 60.094 50.000 0.00 0.00 43.59 2.74
104 105 2.167900 GACCGAACCTACAGCCAATACT 59.832 50.000 0.00 0.00 0.00 2.12
105 106 2.547826 GACCGAACCTACAGCCAATAC 58.452 52.381 0.00 0.00 0.00 1.89
106 107 1.483415 GGACCGAACCTACAGCCAATA 59.517 52.381 0.00 0.00 0.00 1.90
107 108 0.252197 GGACCGAACCTACAGCCAAT 59.748 55.000 0.00 0.00 0.00 3.16
108 109 1.675219 GGACCGAACCTACAGCCAA 59.325 57.895 0.00 0.00 0.00 4.52
109 110 2.642254 CGGACCGAACCTACAGCCA 61.642 63.158 8.64 0.00 0.00 4.75
110 111 2.183555 CGGACCGAACCTACAGCC 59.816 66.667 8.64 0.00 0.00 4.85
111 112 1.445582 CACGGACCGAACCTACAGC 60.446 63.158 23.38 0.00 0.00 4.40
112 113 0.388134 CACACGGACCGAACCTACAG 60.388 60.000 23.38 2.18 0.00 2.74
113 114 0.822944 TCACACGGACCGAACCTACA 60.823 55.000 23.38 0.00 0.00 2.74
114 115 0.314935 TTCACACGGACCGAACCTAC 59.685 55.000 23.38 0.00 0.00 3.18
115 116 0.314935 GTTCACACGGACCGAACCTA 59.685 55.000 23.38 0.00 34.31 3.08
116 117 1.068585 GTTCACACGGACCGAACCT 59.931 57.895 23.38 0.00 34.31 3.50
117 118 3.633951 GTTCACACGGACCGAACC 58.366 61.111 23.38 0.00 34.31 3.62
118 119 1.957695 GGGTTCACACGGACCGAAC 60.958 63.158 23.38 14.11 38.62 3.95
119 120 0.827089 TAGGGTTCACACGGACCGAA 60.827 55.000 23.38 0.31 0.00 4.30
120 121 1.228521 TAGGGTTCACACGGACCGA 60.229 57.895 23.38 0.00 0.00 4.69
121 122 1.214589 CTAGGGTTCACACGGACCG 59.785 63.158 13.61 13.61 0.00 4.79
122 123 1.079336 GCTAGGGTTCACACGGACC 60.079 63.158 0.00 0.00 0.00 4.46
123 124 1.180029 TAGCTAGGGTTCACACGGAC 58.820 55.000 0.00 0.00 0.00 4.79
124 125 1.754803 CATAGCTAGGGTTCACACGGA 59.245 52.381 0.00 0.00 0.00 4.69
125 126 1.202533 CCATAGCTAGGGTTCACACGG 60.203 57.143 16.44 0.00 0.00 4.94
126 127 1.806623 GCCATAGCTAGGGTTCACACG 60.807 57.143 24.48 0.00 35.50 4.49
127 128 1.475213 GGCCATAGCTAGGGTTCACAC 60.475 57.143 24.48 7.54 39.73 3.82
128 129 0.837272 GGCCATAGCTAGGGTTCACA 59.163 55.000 24.48 0.00 39.73 3.58
129 130 0.837272 TGGCCATAGCTAGGGTTCAC 59.163 55.000 24.48 13.39 39.73 3.18
130 131 1.699634 GATGGCCATAGCTAGGGTTCA 59.300 52.381 24.48 21.57 39.73 3.18
131 132 1.003696 GGATGGCCATAGCTAGGGTTC 59.996 57.143 24.48 17.77 39.73 3.62
132 133 1.068121 GGATGGCCATAGCTAGGGTT 58.932 55.000 24.48 10.83 39.73 4.11
133 134 0.104462 TGGATGGCCATAGCTAGGGT 60.104 55.000 24.48 6.01 39.92 4.34
134 135 1.067295 TTGGATGGCCATAGCTAGGG 58.933 55.000 20.84 20.20 45.46 3.53
135 136 1.609061 CGTTGGATGGCCATAGCTAGG 60.609 57.143 20.84 6.57 45.46 3.02
136 137 1.344438 TCGTTGGATGGCCATAGCTAG 59.656 52.381 20.84 10.82 45.46 3.42
137 138 1.419381 TCGTTGGATGGCCATAGCTA 58.581 50.000 20.84 1.56 45.46 3.32
138 139 0.767375 ATCGTTGGATGGCCATAGCT 59.233 50.000 20.84 0.00 45.46 3.32
139 140 1.537202 GAATCGTTGGATGGCCATAGC 59.463 52.381 20.84 7.11 45.46 2.97
140 141 1.800586 CGAATCGTTGGATGGCCATAG 59.199 52.381 20.84 8.20 45.46 2.23
141 142 1.877637 CGAATCGTTGGATGGCCATA 58.122 50.000 20.84 0.00 45.46 2.74
142 143 1.447317 GCGAATCGTTGGATGGCCAT 61.447 55.000 20.96 20.96 45.46 4.40
143 144 2.112198 GCGAATCGTTGGATGGCCA 61.112 57.895 8.56 8.56 44.17 5.36
144 145 2.715624 GCGAATCGTTGGATGGCC 59.284 61.111 4.07 0.00 31.83 5.36
145 146 1.776034 GAGGCGAATCGTTGGATGGC 61.776 60.000 4.07 0.00 34.11 4.40
146 147 1.160329 GGAGGCGAATCGTTGGATGG 61.160 60.000 4.07 0.00 31.83 3.51
147 148 0.179073 AGGAGGCGAATCGTTGGATG 60.179 55.000 4.07 0.00 31.83 3.51
148 149 0.105039 GAGGAGGCGAATCGTTGGAT 59.895 55.000 4.07 0.00 0.00 3.41
149 150 1.515954 GAGGAGGCGAATCGTTGGA 59.484 57.895 4.07 0.00 0.00 3.53
150 151 1.521681 GGAGGAGGCGAATCGTTGG 60.522 63.158 4.07 0.00 0.00 3.77
151 152 0.391130 TTGGAGGAGGCGAATCGTTG 60.391 55.000 4.07 0.00 0.00 4.10
152 153 0.323629 TTTGGAGGAGGCGAATCGTT 59.676 50.000 4.07 0.00 0.00 3.85
153 154 0.323629 TTTTGGAGGAGGCGAATCGT 59.676 50.000 4.07 0.00 0.00 3.73
154 155 1.009829 CTTTTGGAGGAGGCGAATCG 58.990 55.000 0.00 0.00 0.00 3.34
155 156 0.735471 GCTTTTGGAGGAGGCGAATC 59.265 55.000 0.00 0.00 0.00 2.52
156 157 0.329596 AGCTTTTGGAGGAGGCGAAT 59.670 50.000 0.00 0.00 0.00 3.34
157 158 0.321653 GAGCTTTTGGAGGAGGCGAA 60.322 55.000 0.00 0.00 0.00 4.70
158 159 1.194781 AGAGCTTTTGGAGGAGGCGA 61.195 55.000 0.00 0.00 0.00 5.54
159 160 0.322008 AAGAGCTTTTGGAGGAGGCG 60.322 55.000 0.00 0.00 0.00 5.52
160 161 1.271597 TGAAGAGCTTTTGGAGGAGGC 60.272 52.381 0.00 0.00 0.00 4.70
161 162 2.867109 TGAAGAGCTTTTGGAGGAGG 57.133 50.000 0.00 0.00 0.00 4.30
162 163 3.054508 AGGATGAAGAGCTTTTGGAGGAG 60.055 47.826 0.00 0.00 0.00 3.69
163 164 2.915604 AGGATGAAGAGCTTTTGGAGGA 59.084 45.455 0.00 0.00 0.00 3.71
164 165 3.277715 GAGGATGAAGAGCTTTTGGAGG 58.722 50.000 0.00 0.00 0.00 4.30
165 166 2.935201 CGAGGATGAAGAGCTTTTGGAG 59.065 50.000 0.00 0.00 0.00 3.86
166 167 2.567169 TCGAGGATGAAGAGCTTTTGGA 59.433 45.455 0.00 0.00 0.00 3.53
167 168 2.977914 TCGAGGATGAAGAGCTTTTGG 58.022 47.619 0.00 0.00 0.00 3.28
168 169 4.033817 GTGATCGAGGATGAAGAGCTTTTG 59.966 45.833 0.00 0.00 0.00 2.44
169 170 4.081198 AGTGATCGAGGATGAAGAGCTTTT 60.081 41.667 0.00 0.00 0.00 2.27
170 171 3.450457 AGTGATCGAGGATGAAGAGCTTT 59.550 43.478 0.00 0.00 0.00 3.51
171 172 3.030291 AGTGATCGAGGATGAAGAGCTT 58.970 45.455 0.00 0.00 0.00 3.74
172 173 2.665165 AGTGATCGAGGATGAAGAGCT 58.335 47.619 0.00 0.00 0.00 4.09
173 174 3.316588 TGTAGTGATCGAGGATGAAGAGC 59.683 47.826 0.00 0.00 0.00 4.09
174 175 5.335583 GGATGTAGTGATCGAGGATGAAGAG 60.336 48.000 0.00 0.00 0.00 2.85
175 176 4.520874 GGATGTAGTGATCGAGGATGAAGA 59.479 45.833 0.00 0.00 0.00 2.87
176 177 4.522405 AGGATGTAGTGATCGAGGATGAAG 59.478 45.833 0.00 0.00 0.00 3.02
177 178 4.279420 CAGGATGTAGTGATCGAGGATGAA 59.721 45.833 0.00 0.00 0.00 2.57
178 179 3.823304 CAGGATGTAGTGATCGAGGATGA 59.177 47.826 0.00 0.00 0.00 2.92
179 180 3.056962 CCAGGATGTAGTGATCGAGGATG 60.057 52.174 0.00 0.00 0.00 3.51
180 181 3.161067 CCAGGATGTAGTGATCGAGGAT 58.839 50.000 0.00 0.00 0.00 3.24
181 182 2.174854 TCCAGGATGTAGTGATCGAGGA 59.825 50.000 0.00 0.00 0.00 3.71
182 183 2.556189 CTCCAGGATGTAGTGATCGAGG 59.444 54.545 0.00 0.00 0.00 4.63
183 184 3.481453 TCTCCAGGATGTAGTGATCGAG 58.519 50.000 0.00 0.00 0.00 4.04
184 185 3.577805 TCTCCAGGATGTAGTGATCGA 57.422 47.619 0.00 0.00 0.00 3.59
185 186 3.120025 CGATCTCCAGGATGTAGTGATCG 60.120 52.174 17.47 17.47 39.92 3.69
186 187 3.192422 CCGATCTCCAGGATGTAGTGATC 59.808 52.174 0.00 0.00 34.33 2.92
187 188 3.161067 CCGATCTCCAGGATGTAGTGAT 58.839 50.000 0.00 0.00 34.33 3.06
188 189 2.587522 CCGATCTCCAGGATGTAGTGA 58.412 52.381 0.00 0.00 34.33 3.41
189 190 1.000283 GCCGATCTCCAGGATGTAGTG 60.000 57.143 0.00 0.00 34.33 2.74
190 191 1.333177 GCCGATCTCCAGGATGTAGT 58.667 55.000 0.00 0.00 34.33 2.73
191 192 0.605589 GGCCGATCTCCAGGATGTAG 59.394 60.000 0.00 0.00 34.33 2.74
192 193 0.188587 AGGCCGATCTCCAGGATGTA 59.811 55.000 0.00 0.00 34.33 2.29
193 194 1.074926 AGGCCGATCTCCAGGATGT 60.075 57.895 0.00 0.00 34.33 3.06
194 195 1.670590 GAGGCCGATCTCCAGGATG 59.329 63.158 0.00 0.00 34.33 3.51
195 196 4.206697 GAGGCCGATCTCCAGGAT 57.793 61.111 0.00 0.00 37.37 3.24
201 202 1.270571 GGATTGAAGGAGGCCGATCTC 60.271 57.143 0.00 0.00 0.00 2.75
202 203 0.761802 GGATTGAAGGAGGCCGATCT 59.238 55.000 0.00 0.00 0.00 2.75
203 204 0.469917 TGGATTGAAGGAGGCCGATC 59.530 55.000 0.00 0.00 0.00 3.69
204 205 0.918983 TTGGATTGAAGGAGGCCGAT 59.081 50.000 0.00 0.00 0.00 4.18
205 206 0.253044 CTTGGATTGAAGGAGGCCGA 59.747 55.000 0.00 0.00 0.00 5.54
206 207 1.379642 GCTTGGATTGAAGGAGGCCG 61.380 60.000 0.00 0.00 0.00 6.13
207 208 0.033699 AGCTTGGATTGAAGGAGGCC 60.034 55.000 0.00 0.00 0.00 5.19
208 209 1.387539 GAGCTTGGATTGAAGGAGGC 58.612 55.000 0.00 0.00 0.00 4.70
209 210 1.563410 AGGAGCTTGGATTGAAGGAGG 59.437 52.381 0.00 0.00 0.00 4.30
210 211 2.421248 GGAGGAGCTTGGATTGAAGGAG 60.421 54.545 0.00 0.00 0.00 3.69
211 212 1.561542 GGAGGAGCTTGGATTGAAGGA 59.438 52.381 0.00 0.00 0.00 3.36
212 213 1.283029 TGGAGGAGCTTGGATTGAAGG 59.717 52.381 0.00 0.00 0.00 3.46
213 214 2.795231 TGGAGGAGCTTGGATTGAAG 57.205 50.000 0.00 0.00 0.00 3.02
214 215 2.577563 TGATGGAGGAGCTTGGATTGAA 59.422 45.455 0.00 0.00 0.00 2.69
215 216 2.199208 TGATGGAGGAGCTTGGATTGA 58.801 47.619 0.00 0.00 0.00 2.57
216 217 2.723322 TGATGGAGGAGCTTGGATTG 57.277 50.000 0.00 0.00 0.00 2.67
217 218 3.563223 CAATGATGGAGGAGCTTGGATT 58.437 45.455 0.00 0.00 0.00 3.01
218 219 2.752154 GCAATGATGGAGGAGCTTGGAT 60.752 50.000 0.00 0.00 0.00 3.41
219 220 1.409241 GCAATGATGGAGGAGCTTGGA 60.409 52.381 0.00 0.00 0.00 3.53
220 221 1.030457 GCAATGATGGAGGAGCTTGG 58.970 55.000 0.00 0.00 0.00 3.61
221 222 1.030457 GGCAATGATGGAGGAGCTTG 58.970 55.000 0.00 0.00 0.00 4.01
222 223 0.924823 AGGCAATGATGGAGGAGCTT 59.075 50.000 0.00 0.00 0.00 3.74
223 224 0.473326 GAGGCAATGATGGAGGAGCT 59.527 55.000 0.00 0.00 0.00 4.09
224 225 0.473326 AGAGGCAATGATGGAGGAGC 59.527 55.000 0.00 0.00 0.00 4.70
225 226 2.302445 CCTAGAGGCAATGATGGAGGAG 59.698 54.545 0.00 0.00 0.00 3.69
226 227 2.333069 CCTAGAGGCAATGATGGAGGA 58.667 52.381 0.00 0.00 0.00 3.71
227 228 2.038295 GACCTAGAGGCAATGATGGAGG 59.962 54.545 0.00 0.00 39.32 4.30
228 229 2.038295 GGACCTAGAGGCAATGATGGAG 59.962 54.545 0.00 0.00 39.32 3.86
229 230 2.050144 GGACCTAGAGGCAATGATGGA 58.950 52.381 0.00 0.00 39.32 3.41
230 231 1.270518 CGGACCTAGAGGCAATGATGG 60.271 57.143 0.00 0.00 39.32 3.51
231 232 1.688735 TCGGACCTAGAGGCAATGATG 59.311 52.381 0.00 0.00 39.32 3.07
232 233 1.689273 GTCGGACCTAGAGGCAATGAT 59.311 52.381 0.00 0.00 39.32 2.45
233 234 1.112113 GTCGGACCTAGAGGCAATGA 58.888 55.000 0.00 0.00 39.32 2.57
234 235 0.249073 CGTCGGACCTAGAGGCAATG 60.249 60.000 1.91 0.00 39.32 2.82
235 236 0.683504 ACGTCGGACCTAGAGGCAAT 60.684 55.000 1.91 0.00 39.32 3.56
236 237 1.303888 ACGTCGGACCTAGAGGCAA 60.304 57.895 1.91 0.00 39.32 4.52
237 238 2.044555 CACGTCGGACCTAGAGGCA 61.045 63.158 1.91 0.00 39.32 4.75
238 239 1.310933 TTCACGTCGGACCTAGAGGC 61.311 60.000 1.91 0.00 39.32 4.70
239 240 0.733729 CTTCACGTCGGACCTAGAGG 59.266 60.000 1.91 0.00 42.17 3.69
240 241 0.099082 GCTTCACGTCGGACCTAGAG 59.901 60.000 1.91 0.00 0.00 2.43
241 242 1.310933 GGCTTCACGTCGGACCTAGA 61.311 60.000 1.91 0.00 0.00 2.43
242 243 1.139095 GGCTTCACGTCGGACCTAG 59.861 63.158 1.91 0.00 0.00 3.02
243 244 2.693762 CGGCTTCACGTCGGACCTA 61.694 63.158 1.91 0.00 37.01 3.08
244 245 4.052229 CGGCTTCACGTCGGACCT 62.052 66.667 1.91 0.00 37.01 3.85
250 251 4.814294 ATCGGGCGGCTTCACGTC 62.814 66.667 9.56 0.00 37.83 4.34
251 252 4.814294 GATCGGGCGGCTTCACGT 62.814 66.667 9.56 0.00 35.98 4.49
253 254 3.969250 TTGGATCGGGCGGCTTCAC 62.969 63.158 9.56 0.00 0.00 3.18
254 255 2.756321 TTTTGGATCGGGCGGCTTCA 62.756 55.000 9.56 0.00 0.00 3.02
255 256 1.993369 CTTTTGGATCGGGCGGCTTC 61.993 60.000 9.56 3.72 0.00 3.86
256 257 2.034999 TTTTGGATCGGGCGGCTT 59.965 55.556 9.56 0.00 0.00 4.35
257 258 2.438434 CTTTTGGATCGGGCGGCT 60.438 61.111 9.56 0.00 0.00 5.52
258 259 4.193334 GCTTTTGGATCGGGCGGC 62.193 66.667 0.00 0.00 0.00 6.53
259 260 2.438434 AGCTTTTGGATCGGGCGG 60.438 61.111 0.00 0.00 0.00 6.13
260 261 1.586154 AACAGCTTTTGGATCGGGCG 61.586 55.000 0.00 0.00 0.00 6.13
261 262 0.171231 GAACAGCTTTTGGATCGGGC 59.829 55.000 0.00 0.00 0.00 6.13
262 263 1.200020 GTGAACAGCTTTTGGATCGGG 59.800 52.381 0.00 0.00 0.00 5.14
263 264 1.200020 GGTGAACAGCTTTTGGATCGG 59.800 52.381 0.00 0.00 0.00 4.18
264 265 1.200020 GGGTGAACAGCTTTTGGATCG 59.800 52.381 0.00 0.00 0.00 3.69
265 266 2.238521 TGGGTGAACAGCTTTTGGATC 58.761 47.619 0.00 0.00 0.00 3.36
266 267 2.380064 TGGGTGAACAGCTTTTGGAT 57.620 45.000 0.00 0.00 0.00 3.41
267 268 2.380064 ATGGGTGAACAGCTTTTGGA 57.620 45.000 0.00 0.00 0.00 3.53
268 269 4.806640 ATTATGGGTGAACAGCTTTTGG 57.193 40.909 0.00 0.00 0.00 3.28
269 270 6.029346 AGAATTATGGGTGAACAGCTTTTG 57.971 37.500 0.00 0.00 0.00 2.44
270 271 6.012745 AGAGAATTATGGGTGAACAGCTTTT 58.987 36.000 4.10 0.00 0.00 2.27
271 272 5.574188 AGAGAATTATGGGTGAACAGCTTT 58.426 37.500 4.10 0.00 0.00 3.51
272 273 5.184892 AGAGAATTATGGGTGAACAGCTT 57.815 39.130 4.10 0.00 0.00 3.74
273 274 4.851639 AGAGAATTATGGGTGAACAGCT 57.148 40.909 4.10 0.00 0.00 4.24
274 275 4.439289 GCAAGAGAATTATGGGTGAACAGC 60.439 45.833 0.00 0.00 0.00 4.40
275 276 4.096984 GGCAAGAGAATTATGGGTGAACAG 59.903 45.833 0.00 0.00 0.00 3.16
276 277 4.016444 GGCAAGAGAATTATGGGTGAACA 58.984 43.478 0.00 0.00 0.00 3.18
277 278 3.381590 GGGCAAGAGAATTATGGGTGAAC 59.618 47.826 0.00 0.00 0.00 3.18
278 279 3.631250 GGGCAAGAGAATTATGGGTGAA 58.369 45.455 0.00 0.00 0.00 3.18
279 280 2.421388 CGGGCAAGAGAATTATGGGTGA 60.421 50.000 0.00 0.00 0.00 4.02
280 281 1.949525 CGGGCAAGAGAATTATGGGTG 59.050 52.381 0.00 0.00 0.00 4.61
281 282 1.843851 TCGGGCAAGAGAATTATGGGT 59.156 47.619 0.00 0.00 0.00 4.51
282 283 2.498167 CTCGGGCAAGAGAATTATGGG 58.502 52.381 3.50 0.00 40.57 4.00
283 284 2.158755 ACCTCGGGCAAGAGAATTATGG 60.159 50.000 10.26 0.00 40.57 2.74
284 285 3.199880 ACCTCGGGCAAGAGAATTATG 57.800 47.619 10.26 0.00 40.57 1.90
285 286 3.933861 AACCTCGGGCAAGAGAATTAT 57.066 42.857 10.26 0.00 40.57 1.28
286 287 3.263425 AGAAACCTCGGGCAAGAGAATTA 59.737 43.478 10.26 0.00 40.57 1.40
287 288 2.040412 AGAAACCTCGGGCAAGAGAATT 59.960 45.455 10.26 5.35 40.57 2.17
288 289 1.630878 AGAAACCTCGGGCAAGAGAAT 59.369 47.619 10.26 0.00 40.57 2.40
289 290 1.056660 AGAAACCTCGGGCAAGAGAA 58.943 50.000 10.26 0.00 40.57 2.87
290 291 1.002087 GAAGAAACCTCGGGCAAGAGA 59.998 52.381 10.26 0.00 40.57 3.10
291 292 1.270839 TGAAGAAACCTCGGGCAAGAG 60.271 52.381 2.68 2.68 37.97 2.85
292 293 0.762418 TGAAGAAACCTCGGGCAAGA 59.238 50.000 0.00 0.00 0.00 3.02
293 294 1.604604 TTGAAGAAACCTCGGGCAAG 58.395 50.000 0.00 0.00 0.00 4.01
294 295 2.159382 GATTGAAGAAACCTCGGGCAA 58.841 47.619 0.00 0.00 0.00 4.52
295 296 1.351017 AGATTGAAGAAACCTCGGGCA 59.649 47.619 0.00 0.00 0.00 5.36
296 297 1.740025 CAGATTGAAGAAACCTCGGGC 59.260 52.381 0.00 0.00 0.00 6.13
297 298 1.740025 GCAGATTGAAGAAACCTCGGG 59.260 52.381 0.00 0.00 0.00 5.14
298 299 2.417933 CTGCAGATTGAAGAAACCTCGG 59.582 50.000 8.42 0.00 0.00 4.63
299 300 2.417933 CCTGCAGATTGAAGAAACCTCG 59.582 50.000 17.39 0.00 0.00 4.63
300 301 2.163211 GCCTGCAGATTGAAGAAACCTC 59.837 50.000 17.39 0.00 0.00 3.85
301 302 2.165998 GCCTGCAGATTGAAGAAACCT 58.834 47.619 17.39 0.00 0.00 3.50
302 303 1.135575 CGCCTGCAGATTGAAGAAACC 60.136 52.381 17.39 0.00 0.00 3.27
303 304 1.537202 ACGCCTGCAGATTGAAGAAAC 59.463 47.619 17.39 0.00 0.00 2.78
304 305 1.896220 ACGCCTGCAGATTGAAGAAA 58.104 45.000 17.39 0.00 0.00 2.52
305 306 1.896220 AACGCCTGCAGATTGAAGAA 58.104 45.000 17.39 0.00 0.00 2.52
306 307 1.536766 CAAACGCCTGCAGATTGAAGA 59.463 47.619 17.39 0.00 0.00 2.87
307 308 1.401931 CCAAACGCCTGCAGATTGAAG 60.402 52.381 17.39 0.00 0.00 3.02
308 309 0.597568 CCAAACGCCTGCAGATTGAA 59.402 50.000 17.39 0.00 0.00 2.69
309 310 0.250684 TCCAAACGCCTGCAGATTGA 60.251 50.000 17.39 0.00 0.00 2.57
310 311 0.813184 ATCCAAACGCCTGCAGATTG 59.187 50.000 17.39 13.85 0.00 2.67
311 312 1.098050 GATCCAAACGCCTGCAGATT 58.902 50.000 17.39 3.45 0.00 2.40
312 313 0.749454 GGATCCAAACGCCTGCAGAT 60.749 55.000 17.39 0.00 0.00 2.90
313 314 1.377202 GGATCCAAACGCCTGCAGA 60.377 57.895 17.39 0.00 0.00 4.26
314 315 2.409870 GGGATCCAAACGCCTGCAG 61.410 63.158 15.23 6.78 0.00 4.41
315 316 2.361104 GGGATCCAAACGCCTGCA 60.361 61.111 15.23 0.00 0.00 4.41
316 317 2.361104 TGGGATCCAAACGCCTGC 60.361 61.111 15.23 0.00 0.00 4.85
317 318 2.409870 GCTGGGATCCAAACGCCTG 61.410 63.158 15.23 0.00 30.80 4.85
318 319 2.044946 GCTGGGATCCAAACGCCT 60.045 61.111 15.23 0.00 30.80 5.52
319 320 3.140814 GGCTGGGATCCAAACGCC 61.141 66.667 15.23 14.76 35.70 5.68
320 321 3.140814 GGGCTGGGATCCAAACGC 61.141 66.667 15.23 9.50 30.80 4.84
321 322 2.440247 GGGGCTGGGATCCAAACG 60.440 66.667 15.23 0.00 30.80 3.60
322 323 2.042944 GGGGGCTGGGATCCAAAC 60.043 66.667 15.23 0.00 30.80 2.93
336 337 2.718073 CGACGTAGGGACAAGGGGG 61.718 68.421 0.00 0.00 0.00 5.40
337 338 2.890371 CGACGTAGGGACAAGGGG 59.110 66.667 0.00 0.00 0.00 4.79
338 339 2.183555 GCGACGTAGGGACAAGGG 59.816 66.667 0.00 0.00 0.00 3.95
339 340 2.183555 GGCGACGTAGGGACAAGG 59.816 66.667 0.00 0.00 0.00 3.61
355 356 3.777925 CTCGCTGGCGTCAAACGG 61.778 66.667 14.55 0.36 42.82 4.44
356 357 2.733218 TCTCGCTGGCGTCAAACG 60.733 61.111 14.55 5.80 45.88 3.60
675 676 5.977489 TTCTCGAAATCACTAGTTGAGGA 57.023 39.130 0.00 0.00 37.77 3.71
676 677 6.102663 ACATTCTCGAAATCACTAGTTGAGG 58.897 40.000 0.00 0.00 37.77 3.86
677 678 8.750416 CATACATTCTCGAAATCACTAGTTGAG 58.250 37.037 0.00 0.00 37.77 3.02
678 679 7.222805 GCATACATTCTCGAAATCACTAGTTGA 59.777 37.037 0.00 0.00 39.11 3.18
679 680 7.223582 AGCATACATTCTCGAAATCACTAGTTG 59.776 37.037 0.00 0.00 0.00 3.16
680 681 7.223582 CAGCATACATTCTCGAAATCACTAGTT 59.776 37.037 0.00 0.00 0.00 2.24
681 682 6.699204 CAGCATACATTCTCGAAATCACTAGT 59.301 38.462 0.00 0.00 0.00 2.57
682 683 6.346439 GCAGCATACATTCTCGAAATCACTAG 60.346 42.308 0.00 0.00 0.00 2.57
683 684 5.463392 GCAGCATACATTCTCGAAATCACTA 59.537 40.000 0.00 0.00 0.00 2.74
684 685 4.272018 GCAGCATACATTCTCGAAATCACT 59.728 41.667 0.00 0.00 0.00 3.41
685 686 4.521943 GCAGCATACATTCTCGAAATCAC 58.478 43.478 0.00 0.00 0.00 3.06
686 687 3.561310 GGCAGCATACATTCTCGAAATCA 59.439 43.478 0.00 0.00 0.00 2.57
687 688 3.812053 AGGCAGCATACATTCTCGAAATC 59.188 43.478 0.00 0.00 0.00 2.17
688 689 3.562973 CAGGCAGCATACATTCTCGAAAT 59.437 43.478 0.00 0.00 0.00 2.17
689 690 2.938451 CAGGCAGCATACATTCTCGAAA 59.062 45.455 0.00 0.00 0.00 3.46
690 691 2.554142 CAGGCAGCATACATTCTCGAA 58.446 47.619 0.00 0.00 0.00 3.71
691 692 1.807755 GCAGGCAGCATACATTCTCGA 60.808 52.381 0.00 0.00 44.79 4.04
692 693 0.585357 GCAGGCAGCATACATTCTCG 59.415 55.000 0.00 0.00 44.79 4.04
703 704 2.452767 GCTGAATTTTGCAGGCAGC 58.547 52.632 10.88 10.88 44.11 5.25
704 705 1.731424 CGAGCTGAATTTTGCAGGCAG 60.731 52.381 0.00 0.00 34.00 4.85
705 706 0.241749 CGAGCTGAATTTTGCAGGCA 59.758 50.000 0.00 0.00 34.00 4.75
706 707 0.523072 TCGAGCTGAATTTTGCAGGC 59.477 50.000 0.00 0.00 34.00 4.85
834 845 3.455327 GATCTGCCTACGTTTAAGGGTC 58.545 50.000 5.04 0.00 34.46 4.46
922 933 4.127040 CTCTCCAGTCGCTGCGCT 62.127 66.667 18.65 14.81 0.00 5.92
1014 1029 3.010420 TCTACTCAGTCACCATCGACAG 58.990 50.000 0.00 0.00 38.43 3.51
1019 1034 7.593273 CGAAAATCTATCTACTCAGTCACCATC 59.407 40.741 0.00 0.00 0.00 3.51
1411 6561 7.836842 AGTTTTATTGGTTCCATGAATGTACC 58.163 34.615 0.00 5.36 33.61 3.34
1758 6944 1.328680 CTGTATGACGCTGGATGTTGC 59.671 52.381 0.00 0.00 0.00 4.17
1793 6979 0.752658 AAGCCCTGAACACTTTTGCC 59.247 50.000 0.00 0.00 0.00 4.52
2324 7538 4.882671 TGACTGAGACAAAAACAAGAGC 57.117 40.909 0.00 0.00 0.00 4.09
2325 7539 6.369059 ACATGACTGAGACAAAAACAAGAG 57.631 37.500 0.00 0.00 0.00 2.85
2430 7653 8.592809 AGACTAATCCATTCCATGAAGAGATAC 58.407 37.037 0.00 0.00 0.00 2.24
2487 7710 2.830321 TCCACCATATGTTGCAATGCAA 59.170 40.909 17.55 17.55 46.80 4.08
2561 7785 4.860072 AGTTCTTGCGTTTGAAATTCTCC 58.140 39.130 0.00 0.00 0.00 3.71
2577 7801 6.057533 TGATTGATGCCGATGAATAGTTCTT 58.942 36.000 0.00 0.00 0.00 2.52
2595 7819 2.103771 GCCTCTGCCTGTAGATGATTGA 59.896 50.000 0.00 0.00 0.00 2.57
2655 7886 6.597832 TTAATTTGAATAACACACCAGGGG 57.402 37.500 0.00 0.00 0.00 4.79
2688 7919 8.924303 TGCTACCAGATACTATCAAACACTTAT 58.076 33.333 0.00 0.00 0.00 1.73
2689 7920 8.301252 TGCTACCAGATACTATCAAACACTTA 57.699 34.615 0.00 0.00 0.00 2.24
2698 7929 4.668636 AGGACCTGCTACCAGATACTATC 58.331 47.826 0.00 0.00 41.77 2.08
2700 7931 4.168283 AGAAGGACCTGCTACCAGATACTA 59.832 45.833 0.00 0.00 41.77 1.82
2701 7932 3.052490 AGAAGGACCTGCTACCAGATACT 60.052 47.826 0.00 0.00 41.77 2.12
2702 7933 3.301274 AGAAGGACCTGCTACCAGATAC 58.699 50.000 0.00 0.00 41.77 2.24
2703 7934 3.205507 AGAGAAGGACCTGCTACCAGATA 59.794 47.826 0.33 0.00 41.77 1.98
2705 7936 1.359474 AGAGAAGGACCTGCTACCAGA 59.641 52.381 0.33 0.00 41.77 3.86
2706 7937 1.859302 AGAGAAGGACCTGCTACCAG 58.141 55.000 0.33 0.00 38.85 4.00
2708 7939 1.406205 GCAAGAGAAGGACCTGCTACC 60.406 57.143 0.33 0.00 0.00 3.18
2709 7940 1.552792 AGCAAGAGAAGGACCTGCTAC 59.447 52.381 0.33 0.00 0.00 3.58
2710 7941 1.944177 AGCAAGAGAAGGACCTGCTA 58.056 50.000 0.33 0.00 0.00 3.49
2712 7943 2.289694 TGTTAGCAAGAGAAGGACCTGC 60.290 50.000 0.00 0.00 0.00 4.85
2713 7944 3.685139 TGTTAGCAAGAGAAGGACCTG 57.315 47.619 0.00 0.00 0.00 4.00
2714 7945 4.081198 CAGATGTTAGCAAGAGAAGGACCT 60.081 45.833 0.00 0.00 0.00 3.85
2715 7946 4.187694 CAGATGTTAGCAAGAGAAGGACC 58.812 47.826 0.00 0.00 0.00 4.46
2716 7947 4.187694 CCAGATGTTAGCAAGAGAAGGAC 58.812 47.826 0.00 0.00 0.00 3.85
2717 7948 3.840666 ACCAGATGTTAGCAAGAGAAGGA 59.159 43.478 0.00 0.00 0.00 3.36
2718 7949 4.081198 AGACCAGATGTTAGCAAGAGAAGG 60.081 45.833 0.00 0.00 0.00 3.46
2719 7950 5.083533 AGACCAGATGTTAGCAAGAGAAG 57.916 43.478 0.00 0.00 0.00 2.85
2721 7952 5.489792 AAAGACCAGATGTTAGCAAGAGA 57.510 39.130 0.00 0.00 0.00 3.10
2722 7953 6.820656 ACATAAAGACCAGATGTTAGCAAGAG 59.179 38.462 0.00 0.00 29.46 2.85
2723 7954 6.711277 ACATAAAGACCAGATGTTAGCAAGA 58.289 36.000 0.00 0.00 29.46 3.02
2724 7955 6.820656 AGACATAAAGACCAGATGTTAGCAAG 59.179 38.462 0.00 0.00 33.99 4.01
2725 7956 6.711277 AGACATAAAGACCAGATGTTAGCAA 58.289 36.000 0.00 0.00 33.99 3.91
2726 7957 6.299805 AGACATAAAGACCAGATGTTAGCA 57.700 37.500 0.00 0.00 33.99 3.49
2729 7960 7.400599 ACGTAGACATAAAGACCAGATGTTA 57.599 36.000 0.00 0.00 33.99 2.41
2732 7963 8.873215 AATAACGTAGACATAAAGACCAGATG 57.127 34.615 0.00 0.00 0.00 2.90
2733 7964 8.915036 AGAATAACGTAGACATAAAGACCAGAT 58.085 33.333 0.00 0.00 0.00 2.90
2735 7966 8.188799 TCAGAATAACGTAGACATAAAGACCAG 58.811 37.037 0.00 0.00 0.00 4.00
2736 7967 8.058667 TCAGAATAACGTAGACATAAAGACCA 57.941 34.615 0.00 0.00 0.00 4.02
2737 7968 8.922058 TTCAGAATAACGTAGACATAAAGACC 57.078 34.615 0.00 0.00 0.00 3.85
2746 8038 7.688578 GCAAACAGAATTCAGAATAACGTAGAC 59.311 37.037 8.44 0.00 0.00 2.59
2782 8075 7.725844 AGAAAGTTCAGTTCATACCCTCAATTT 59.274 33.333 0.00 0.00 0.00 1.82
2823 8116 9.974980 GTCAAACAGTTCCTTTCCAATAATTAA 57.025 29.630 0.00 0.00 0.00 1.40
3055 8349 1.883084 CAATAGCTGCCGACCGGAC 60.883 63.158 9.46 0.00 37.50 4.79
3083 8377 8.408043 TGAACTATTGATCAAACCACAAAGAT 57.592 30.769 13.09 0.00 0.00 2.40
3099 8393 5.413833 AGTCAGCTGAACCAATGAACTATTG 59.586 40.000 20.19 0.00 44.67 1.90
3143 8437 7.743116 TTGGAAAGTGACTAGGGAATATACA 57.257 36.000 0.00 0.00 0.00 2.29
3153 8447 5.047802 ACAAATGGCATTGGAAAGTGACTAG 60.048 40.000 21.24 0.00 34.56 2.57
3156 8450 3.989817 GACAAATGGCATTGGAAAGTGAC 59.010 43.478 21.24 7.68 34.56 3.67
3170 8464 1.539827 GGTGACTTTCCGGACAAATGG 59.460 52.381 1.83 0.00 0.00 3.16
3179 8473 2.629051 GTGGATAAGGGTGACTTTCCG 58.371 52.381 0.00 0.00 40.64 4.30
3221 8518 8.954350 CATCTCACCTCAGTTTTCATCTTTTAT 58.046 33.333 0.00 0.00 0.00 1.40
3222 8519 7.094634 GCATCTCACCTCAGTTTTCATCTTTTA 60.095 37.037 0.00 0.00 0.00 1.52
3228 8525 4.260170 GAGCATCTCACCTCAGTTTTCAT 58.740 43.478 0.00 0.00 0.00 2.57
3231 8528 3.777106 TGAGCATCTCACCTCAGTTTT 57.223 42.857 0.00 0.00 35.39 2.43
3327 8777 2.552315 CAAGCATAGAAACACGGTGGTT 59.448 45.455 11.92 11.92 0.00 3.67
3362 8812 3.525199 ACCACAGATAGCCTCAGGATTTT 59.475 43.478 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.