Multiple sequence alignment - TraesCS5B01G327100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G327100 chr5B 100.000 3266 0 0 1 3266 511071141 511074406 0.000000e+00 6032.0
1 TraesCS5B01G327100 chr5B 84.930 1785 218 26 878 2641 511026541 511028295 0.000000e+00 1759.0
2 TraesCS5B01G327100 chr5B 86.125 1636 190 20 1024 2641 510887357 510888973 0.000000e+00 1729.0
3 TraesCS5B01G327100 chr5B 83.747 1852 231 40 826 2641 511063912 511065729 0.000000e+00 1688.0
4 TraesCS5B01G327100 chr5B 90.690 580 48 4 31 606 210189584 210190161 0.000000e+00 767.0
5 TraesCS5B01G327100 chr5A 93.386 2661 109 17 650 3264 536869295 536871934 0.000000e+00 3877.0
6 TraesCS5B01G327100 chr5A 82.252 2158 295 52 878 3006 536858301 536860399 0.000000e+00 1783.0
7 TraesCS5B01G327100 chr5A 86.272 1639 187 23 1022 2641 536796862 536798481 0.000000e+00 1746.0
8 TraesCS5B01G327100 chr5A 82.967 1591 200 39 878 2452 536853009 536854544 0.000000e+00 1371.0
9 TraesCS5B01G327100 chr5A 87.294 425 47 3 863 1287 536863816 536864233 2.280000e-131 479.0
10 TraesCS5B01G327100 chr5A 93.860 114 6 1 555 667 536869169 536869282 1.560000e-38 171.0
11 TraesCS5B01G327100 chr5D 93.809 2342 92 27 728 3046 423370529 423372840 0.000000e+00 3472.0
12 TraesCS5B01G327100 chr5D 84.865 1784 220 30 878 2641 423317501 423319254 0.000000e+00 1753.0
13 TraesCS5B01G327100 chr5D 83.245 1880 244 37 796 2641 423328658 423330500 0.000000e+00 1661.0
14 TraesCS5B01G327100 chr5D 81.854 2017 280 45 863 2840 423322432 423324401 0.000000e+00 1618.0
15 TraesCS5B01G327100 chr5D 85.748 421 42 7 867 1287 423334527 423334929 2.330000e-116 429.0
16 TraesCS5B01G327100 chr5D 81.579 190 23 6 3075 3264 423372838 423373015 2.630000e-31 147.0
17 TraesCS5B01G327100 chr5D 100.000 28 0 0 570 597 377954887 377954914 6.000000e-03 52.8
18 TraesCS5B01G327100 chr7A 93.548 527 31 1 31 554 319591464 319591990 0.000000e+00 782.0
19 TraesCS5B01G327100 chr7A 93.058 533 33 2 37 566 664228514 664227983 0.000000e+00 776.0
20 TraesCS5B01G327100 chr3D 93.548 527 31 1 31 554 365531351 365531877 0.000000e+00 782.0
21 TraesCS5B01G327100 chr3B 93.858 521 29 1 37 554 398842909 398842389 0.000000e+00 782.0
22 TraesCS5B01G327100 chr2D 93.548 527 31 1 31 554 351053243 351053769 0.000000e+00 782.0
23 TraesCS5B01G327100 chr2A 93.858 521 29 1 37 554 624462756 624462236 0.000000e+00 782.0
24 TraesCS5B01G327100 chr7D 91.207 580 41 8 37 608 613691551 613690974 0.000000e+00 780.0
25 TraesCS5B01G327100 chr4D 93.834 519 29 1 39 554 428568022 428568540 0.000000e+00 778.0
26 TraesCS5B01G327100 chr4A 93.220 59 4 0 3052 3110 619105908 619105966 1.610000e-13 87.9
27 TraesCS5B01G327100 chr7B 92.683 41 2 1 563 603 58640787 58640748 1.270000e-04 58.4
28 TraesCS5B01G327100 chr1B 100.000 28 0 0 581 608 551235984 551235957 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G327100 chr5B 511071141 511074406 3265 False 6032.0 6032 100.0000 1 3266 1 chr5B.!!$F5 3265
1 TraesCS5B01G327100 chr5B 511026541 511028295 1754 False 1759.0 1759 84.9300 878 2641 1 chr5B.!!$F3 1763
2 TraesCS5B01G327100 chr5B 510887357 510888973 1616 False 1729.0 1729 86.1250 1024 2641 1 chr5B.!!$F2 1617
3 TraesCS5B01G327100 chr5B 511063912 511065729 1817 False 1688.0 1688 83.7470 826 2641 1 chr5B.!!$F4 1815
4 TraesCS5B01G327100 chr5B 210189584 210190161 577 False 767.0 767 90.6900 31 606 1 chr5B.!!$F1 575
5 TraesCS5B01G327100 chr5A 536869169 536871934 2765 False 2024.0 3877 93.6230 555 3264 2 chr5A.!!$F3 2709
6 TraesCS5B01G327100 chr5A 536796862 536798481 1619 False 1746.0 1746 86.2720 1022 2641 1 chr5A.!!$F1 1619
7 TraesCS5B01G327100 chr5A 536853009 536864233 11224 False 1211.0 1783 84.1710 863 3006 3 chr5A.!!$F2 2143
8 TraesCS5B01G327100 chr5D 423370529 423373015 2486 False 1809.5 3472 87.6940 728 3264 2 chr5D.!!$F5 2536
9 TraesCS5B01G327100 chr5D 423317501 423324401 6900 False 1685.5 1753 83.3595 863 2840 2 chr5D.!!$F4 1977
10 TraesCS5B01G327100 chr5D 423328658 423330500 1842 False 1661.0 1661 83.2450 796 2641 1 chr5D.!!$F2 1845
11 TraesCS5B01G327100 chr7A 319591464 319591990 526 False 782.0 782 93.5480 31 554 1 chr7A.!!$F1 523
12 TraesCS5B01G327100 chr7A 664227983 664228514 531 True 776.0 776 93.0580 37 566 1 chr7A.!!$R1 529
13 TraesCS5B01G327100 chr3D 365531351 365531877 526 False 782.0 782 93.5480 31 554 1 chr3D.!!$F1 523
14 TraesCS5B01G327100 chr3B 398842389 398842909 520 True 782.0 782 93.8580 37 554 1 chr3B.!!$R1 517
15 TraesCS5B01G327100 chr2D 351053243 351053769 526 False 782.0 782 93.5480 31 554 1 chr2D.!!$F1 523
16 TraesCS5B01G327100 chr2A 624462236 624462756 520 True 782.0 782 93.8580 37 554 1 chr2A.!!$R1 517
17 TraesCS5B01G327100 chr7D 613690974 613691551 577 True 780.0 780 91.2070 37 608 1 chr7D.!!$R1 571
18 TraesCS5B01G327100 chr4D 428568022 428568540 518 False 778.0 778 93.8340 39 554 1 chr4D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 342 0.026803 CTAAAGCGTGCGGAGAATGC 59.973 55.0 0.0 0.0 0.00 3.56 F
1364 1450 0.321346 TCAAGCAAGGACGAGCATGA 59.679 50.0 0.0 0.0 36.29 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1694 0.531532 CCTGCCGGTCTAGAATGCTG 60.532 60.0 1.90 1.88 0.00 4.41 R
2668 13070 0.523072 CAATGCACACCAGGTAGCAC 59.477 55.0 18.52 0.00 36.72 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.719588 TCGTTGCGTCAAAATGTCG 57.280 47.368 0.00 0.00 32.37 4.35
19 20 1.209998 TCGTTGCGTCAAAATGTCGA 58.790 45.000 1.39 0.00 30.84 4.20
20 21 1.795872 TCGTTGCGTCAAAATGTCGAT 59.204 42.857 1.39 0.00 30.84 3.59
21 22 1.898079 CGTTGCGTCAAAATGTCGATG 59.102 47.619 1.39 0.00 30.84 3.84
22 23 1.643810 GTTGCGTCAAAATGTCGATGC 59.356 47.619 1.39 0.00 43.13 3.91
23 24 3.674225 GCGTCAAAATGTCGATGCA 57.326 47.368 0.00 0.00 42.52 3.96
24 25 1.962412 GCGTCAAAATGTCGATGCAA 58.038 45.000 0.00 0.00 42.52 4.08
25 26 1.643810 GCGTCAAAATGTCGATGCAAC 59.356 47.619 0.00 0.00 42.52 4.17
26 27 1.898079 CGTCAAAATGTCGATGCAACG 59.102 47.619 10.48 10.48 30.84 4.10
27 28 2.661709 CGTCAAAATGTCGATGCAACGT 60.662 45.455 16.31 0.00 30.84 3.99
28 29 3.422473 CGTCAAAATGTCGATGCAACGTA 60.422 43.478 16.31 7.34 30.84 3.57
29 30 3.838550 GTCAAAATGTCGATGCAACGTAC 59.161 43.478 16.31 12.87 34.70 3.67
32 33 2.647529 ATGTCGATGCAACGTACAGA 57.352 45.000 16.31 0.00 31.47 3.41
35 36 0.526211 TCGATGCAACGTACAGAGCT 59.474 50.000 16.31 0.00 34.70 4.09
92 93 0.248054 CGACCCGCAATGTTGTATGC 60.248 55.000 0.00 0.00 39.17 3.14
102 103 1.298157 TGTTGTATGCCGCTGAGTGC 61.298 55.000 0.00 0.00 38.57 4.40
141 142 4.084537 CGACATGTTCAACAGTTAGGTGTC 60.085 45.833 0.00 8.93 35.97 3.67
143 144 3.804786 TGTTCAACAGTTAGGTGTCGA 57.195 42.857 0.00 0.00 35.97 4.20
145 146 3.382227 TGTTCAACAGTTAGGTGTCGAGA 59.618 43.478 0.00 0.00 35.97 4.04
159 160 5.069119 AGGTGTCGAGAAGATGCATATGTTA 59.931 40.000 0.00 0.00 0.00 2.41
220 221 7.773690 TCCGGAATGATGATATACGAGATAGAA 59.226 37.037 0.00 0.00 0.00 2.10
239 240 3.372557 TTGGGGTAGCACCAATTGG 57.627 52.632 23.31 23.31 42.75 3.16
241 242 0.780637 TGGGGTAGCACCAATTGGAA 59.219 50.000 31.22 10.19 41.02 3.53
243 244 2.252714 GGGGTAGCACCAATTGGAAAA 58.747 47.619 31.22 10.18 41.02 2.29
317 318 0.179100 GAAGCTCCAGTGCATAGCGA 60.179 55.000 0.00 0.00 41.19 4.93
341 342 0.026803 CTAAAGCGTGCGGAGAATGC 59.973 55.000 0.00 0.00 0.00 3.56
376 377 3.307199 GGGTAGACCGAATTTGACTTGGA 60.307 47.826 0.00 0.00 36.71 3.53
384 385 4.319177 CGAATTTGACTTGGAAGGAGTCT 58.681 43.478 5.92 0.00 43.07 3.24
440 441 1.501170 AGAGCTAGCTATGGACAGGGA 59.499 52.381 19.38 0.00 0.00 4.20
469 473 2.121948 AGCTTATCCATGTGCCAGAGA 58.878 47.619 0.00 0.00 0.00 3.10
486 490 2.143122 GAGACATGAGTTGGTTGCGAA 58.857 47.619 0.00 0.00 0.00 4.70
514 518 3.865571 TGGGTTTCACCTCTAACCTACT 58.134 45.455 0.00 0.00 42.72 2.57
526 530 6.126565 ACCTCTAACCTACTCCAACTTGTTTT 60.127 38.462 0.00 0.00 0.00 2.43
634 638 5.568685 TCAGGTTGTTTGAATTTCACGAA 57.431 34.783 0.00 0.00 0.00 3.85
635 639 5.336744 TCAGGTTGTTTGAATTTCACGAAC 58.663 37.500 0.00 3.06 33.67 3.95
726 761 3.889692 CCCCACGCAGCCCCATAT 61.890 66.667 0.00 0.00 0.00 1.78
909 970 1.079405 CGCTCTCGGTAAGGCCAAA 60.079 57.895 5.01 0.00 36.97 3.28
952 1021 5.282510 GTCTGAATCTATCGTCGATTTGGT 58.717 41.667 13.91 0.43 31.62 3.67
1310 1387 4.117685 GTCACCGGGTATGAGATTGTTAC 58.882 47.826 6.32 0.00 0.00 2.50
1359 1445 1.800655 CGGATCTCAAGCAAGGACGAG 60.801 57.143 0.00 0.00 0.00 4.18
1360 1446 1.285578 GATCTCAAGCAAGGACGAGC 58.714 55.000 0.00 0.00 0.00 5.03
1361 1447 0.610174 ATCTCAAGCAAGGACGAGCA 59.390 50.000 0.00 0.00 0.00 4.26
1362 1448 0.610174 TCTCAAGCAAGGACGAGCAT 59.390 50.000 0.00 0.00 0.00 3.79
1363 1449 0.725686 CTCAAGCAAGGACGAGCATG 59.274 55.000 0.00 0.00 0.00 4.06
1364 1450 0.321346 TCAAGCAAGGACGAGCATGA 59.679 50.000 0.00 0.00 36.29 3.07
1377 1463 2.730404 CGAGCATGATAGCATCTGTGTC 59.270 50.000 0.00 0.00 36.85 3.67
1610 1702 0.814410 CTCCGCATCTGCAGCATTCT 60.814 55.000 9.47 0.00 42.21 2.40
1611 1703 0.465287 TCCGCATCTGCAGCATTCTA 59.535 50.000 9.47 0.00 42.21 2.10
2214 7632 8.067751 ACACTTATGCTGATGAACTAGAACTA 57.932 34.615 0.00 0.00 0.00 2.24
2326 7755 5.245531 TGGCTGTTCACCTTATGTTCTAAG 58.754 41.667 0.00 0.00 0.00 2.18
2386 7815 6.292328 GCATCTTTGAAAAAGTACCTTTGTGC 60.292 38.462 0.05 0.00 33.64 4.57
2387 7816 5.656480 TCTTTGAAAAAGTACCTTTGTGCC 58.344 37.500 0.05 0.00 33.64 5.01
2388 7817 5.420739 TCTTTGAAAAAGTACCTTTGTGCCT 59.579 36.000 0.05 0.00 33.64 4.75
2389 7818 4.647424 TGAAAAAGTACCTTTGTGCCTG 57.353 40.909 0.00 0.00 33.64 4.85
2645 13044 6.615264 ACAGATAATCATTTGCTAGCACAG 57.385 37.500 19.17 10.40 0.00 3.66
2654 13053 5.123820 TCATTTGCTAGCACAGTTATGTTCC 59.876 40.000 19.17 0.00 37.65 3.62
2668 13070 2.472695 TGTTCCCCTCGAATGTTCAG 57.527 50.000 0.00 0.00 31.67 3.02
2738 13142 1.407618 GTTTTTCTTCCGCCTTGTGGT 59.592 47.619 0.00 0.00 34.40 4.16
2741 13145 1.452145 TTCTTCCGCCTTGTGGTTGC 61.452 55.000 0.00 0.00 34.40 4.17
2745 13155 1.007387 CCGCCTTGTGGTTGCTTTC 60.007 57.895 0.00 0.00 35.27 2.62
2823 13240 5.764131 TGAACGGACAAAAATTTAGCGAAT 58.236 33.333 0.00 0.00 0.00 3.34
2922 13339 8.573035 GTGAATAATTGAAAAGTGGTTCAGGTA 58.427 33.333 0.00 0.00 38.69 3.08
2962 13379 4.744795 TTTACAGGCTCTCTTCTCCATC 57.255 45.455 0.00 0.00 0.00 3.51
3069 16215 2.912025 AAGCCTGGCCACAAACCG 60.912 61.111 16.57 0.00 0.00 4.44
3094 16808 1.105167 ACTCGGACTGAACACGACCA 61.105 55.000 0.00 0.00 32.66 4.02
3171 16905 5.761003 CGGTTTATTTTCTAACAAACCCGT 58.239 37.500 8.95 0.00 44.58 5.28
3204 16938 3.686726 GGCAACAGAACACTCCTTGATAG 59.313 47.826 0.00 0.00 0.00 2.08
3229 16963 2.186826 AACGTTTTGCAGCTCGGCT 61.187 52.632 0.00 0.00 40.77 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.209998 TCGACATTTTGACGCAACGA 58.790 45.000 0.00 0.00 35.65 3.85
1 2 1.898079 CATCGACATTTTGACGCAACG 59.102 47.619 0.00 0.00 35.65 4.10
3 4 1.265365 TGCATCGACATTTTGACGCAA 59.735 42.857 0.00 0.00 35.65 4.85
5 6 1.643810 GTTGCATCGACATTTTGACGC 59.356 47.619 0.00 0.00 35.65 5.19
6 7 1.898079 CGTTGCATCGACATTTTGACG 59.102 47.619 11.75 0.00 36.91 4.35
7 8 2.916111 ACGTTGCATCGACATTTTGAC 58.084 42.857 23.12 0.00 34.70 3.18
8 9 3.495001 TGTACGTTGCATCGACATTTTGA 59.505 39.130 23.12 0.00 34.70 2.69
9 10 3.804688 TGTACGTTGCATCGACATTTTG 58.195 40.909 23.12 0.00 34.70 2.44
10 11 3.743911 TCTGTACGTTGCATCGACATTTT 59.256 39.130 23.12 2.76 34.70 1.82
11 12 3.322369 TCTGTACGTTGCATCGACATTT 58.678 40.909 23.12 3.48 34.70 2.32
12 13 2.923655 CTCTGTACGTTGCATCGACATT 59.076 45.455 23.12 3.84 34.70 2.71
13 14 2.530177 CTCTGTACGTTGCATCGACAT 58.470 47.619 23.12 4.20 34.70 3.06
14 15 1.977188 CTCTGTACGTTGCATCGACA 58.023 50.000 23.12 18.93 34.70 4.35
15 16 0.640768 GCTCTGTACGTTGCATCGAC 59.359 55.000 23.12 15.87 34.70 4.20
16 17 0.526211 AGCTCTGTACGTTGCATCGA 59.474 50.000 23.12 4.87 34.70 3.59
17 18 1.846782 GTAGCTCTGTACGTTGCATCG 59.153 52.381 15.36 15.36 0.00 3.84
18 19 2.876091 TGTAGCTCTGTACGTTGCATC 58.124 47.619 0.00 0.00 0.00 3.91
19 20 3.313012 TTGTAGCTCTGTACGTTGCAT 57.687 42.857 0.00 0.00 0.00 3.96
20 21 2.804697 TTGTAGCTCTGTACGTTGCA 57.195 45.000 0.00 0.00 0.00 4.08
21 22 3.664537 GCTTTTGTAGCTCTGTACGTTGC 60.665 47.826 0.00 0.00 46.77 4.17
22 23 4.053903 GCTTTTGTAGCTCTGTACGTTG 57.946 45.455 0.00 0.00 46.77 4.10
35 36 8.679100 TGTAGAACTTGCTTTTTAGCTTTTGTA 58.321 29.630 0.00 0.00 35.49 2.41
49 50 0.037232 GCCGTCCTGTAGAACTTGCT 60.037 55.000 0.00 0.00 0.00 3.91
102 103 1.079405 TCGCCTTTTAGTCGGCCAG 60.079 57.895 2.24 0.00 43.38 4.85
141 142 6.870439 TCCATCTTAACATATGCATCTTCTCG 59.130 38.462 0.19 0.00 0.00 4.04
143 144 8.162085 ACATCCATCTTAACATATGCATCTTCT 58.838 33.333 0.19 0.00 0.00 2.85
145 146 7.722728 ACACATCCATCTTAACATATGCATCTT 59.277 33.333 0.19 0.00 0.00 2.40
159 160 3.271250 GTGGCCACACATCCATCTT 57.729 52.632 31.23 0.00 46.90 2.40
181 182 1.041447 TTCCGGACTCGATCCTTCCC 61.041 60.000 1.83 0.00 46.69 3.97
241 242 3.632145 AGACGATGTTGGACAAGCTTTTT 59.368 39.130 0.00 0.00 0.00 1.94
243 244 2.549754 CAGACGATGTTGGACAAGCTTT 59.450 45.455 0.00 0.00 0.00 3.51
270 271 1.401761 TGCGCTGAATATGCCCAAAT 58.598 45.000 9.73 0.00 0.00 2.32
290 291 1.537397 ACTGGAGCTTCTGGAGGCA 60.537 57.895 3.68 0.00 35.69 4.75
317 318 3.419759 CCGCACGCTTTAGCCGTT 61.420 61.111 0.00 0.00 37.91 4.44
341 342 2.365105 TACCCCGCCCTCTCTTGG 60.365 66.667 0.00 0.00 0.00 3.61
372 373 5.244178 GTCTCTCTTAACAGACTCCTTCCAA 59.756 44.000 0.00 0.00 36.80 3.53
376 377 4.770010 CAGGTCTCTCTTAACAGACTCCTT 59.230 45.833 0.00 0.00 39.30 3.36
384 385 5.046304 CCAATCCTTCAGGTCTCTCTTAACA 60.046 44.000 0.00 0.00 36.34 2.41
469 473 3.149196 AGATTTCGCAACCAACTCATGT 58.851 40.909 0.00 0.00 0.00 3.21
514 518 7.580495 AAAGCATTTAGTCCAAAACAAGTTGGA 60.580 33.333 7.96 2.52 45.46 3.53
526 530 5.590530 ACAACAACAAAGCATTTAGTCCA 57.409 34.783 0.00 0.00 35.03 4.02
535 539 2.759191 TGCAACAACAACAACAAAGCA 58.241 38.095 0.00 0.00 0.00 3.91
608 612 6.695278 TCGTGAAATTCAAACAACCTGATTTC 59.305 34.615 0.00 0.00 0.00 2.17
634 638 9.040939 CCGTTTTATTTTCCAGATTTGAAAAGT 57.959 29.630 0.00 0.00 42.91 2.66
635 639 9.040939 ACCGTTTTATTTTCCAGATTTGAAAAG 57.959 29.630 0.00 0.00 42.91 2.27
720 755 4.576053 TCGCTTTCTCATTGACAATATGGG 59.424 41.667 0.00 0.00 0.00 4.00
722 757 6.292757 CCTCTCGCTTTCTCATTGACAATATG 60.293 42.308 0.00 0.00 0.00 1.78
723 758 5.757320 CCTCTCGCTTTCTCATTGACAATAT 59.243 40.000 0.00 0.00 0.00 1.28
724 759 5.111989 CCTCTCGCTTTCTCATTGACAATA 58.888 41.667 0.00 0.00 0.00 1.90
725 760 3.937706 CCTCTCGCTTTCTCATTGACAAT 59.062 43.478 0.00 0.00 0.00 2.71
726 761 3.329386 CCTCTCGCTTTCTCATTGACAA 58.671 45.455 0.00 0.00 0.00 3.18
829 888 1.222113 GAAGGGCGGAGAGGAAAGG 59.778 63.158 0.00 0.00 0.00 3.11
836 897 0.106619 GTAGAGGAGAAGGGCGGAGA 60.107 60.000 0.00 0.00 0.00 3.71
909 970 3.474570 GGCTGTGCCGAGGAGGAT 61.475 66.667 0.00 0.00 45.00 3.24
929 998 5.174035 CACCAAATCGACGATAGATTCAGAC 59.826 44.000 11.42 0.00 37.34 3.51
952 1021 2.268920 GGTGAGCAATCGAGGGCA 59.731 61.111 12.85 0.00 0.00 5.36
1170 1247 2.342279 CGGTGTCGGGACATGTGT 59.658 61.111 1.15 0.00 43.97 3.72
1310 1387 2.209064 ATCACCCGACTCGTTCACCG 62.209 60.000 0.00 0.00 38.13 4.94
1359 1445 2.220363 CACGACACAGATGCTATCATGC 59.780 50.000 0.00 0.00 31.96 4.06
1360 1446 2.220363 GCACGACACAGATGCTATCATG 59.780 50.000 0.00 0.00 36.40 3.07
1361 1447 2.477825 GCACGACACAGATGCTATCAT 58.522 47.619 0.00 0.00 36.40 2.45
1362 1448 1.798813 CGCACGACACAGATGCTATCA 60.799 52.381 0.00 0.00 37.20 2.15
1363 1449 0.848942 CGCACGACACAGATGCTATC 59.151 55.000 0.00 0.00 37.20 2.08
1364 1450 1.148157 GCGCACGACACAGATGCTAT 61.148 55.000 0.30 0.00 37.20 2.97
1602 1694 0.531532 CCTGCCGGTCTAGAATGCTG 60.532 60.000 1.90 1.88 0.00 4.41
1610 1702 1.399714 CTCACATACCTGCCGGTCTA 58.600 55.000 1.80 0.00 44.21 2.59
1611 1703 1.330655 CCTCACATACCTGCCGGTCT 61.331 60.000 1.80 0.00 44.21 3.85
1917 7325 3.691118 TCAACTCAGCCAATGATAACTGC 59.309 43.478 0.00 0.00 37.28 4.40
2214 7632 3.203710 TGCCAATTGATCTGGGATCTCTT 59.796 43.478 7.12 0.94 34.25 2.85
2326 7755 6.959361 ACATTGTCTCACTAATTGTTCACAC 58.041 36.000 0.00 0.00 0.00 3.82
2645 13044 4.258543 TGAACATTCGAGGGGAACATAAC 58.741 43.478 0.00 0.00 37.50 1.89
2654 13053 2.271800 GTAGCACTGAACATTCGAGGG 58.728 52.381 0.00 0.00 0.00 4.30
2668 13070 0.523072 CAATGCACACCAGGTAGCAC 59.477 55.000 18.52 0.00 36.72 4.40
2713 13117 2.618709 CAAGGCGGAAGAAAAACAGAGT 59.381 45.455 0.00 0.00 0.00 3.24
2823 13240 9.730705 AAGAGTAGTGAAAAGATTCATCATGAA 57.269 29.630 1.59 1.59 46.67 2.57
2922 13339 7.721399 CCTGTAAATTACCATAGCCAGAGATTT 59.279 37.037 0.18 0.00 0.00 2.17
2962 13379 3.488047 CCTCTGCATTTTACATGGAAGCG 60.488 47.826 0.00 0.00 0.00 4.68
3049 16195 3.604667 TTTGTGGCCAGGCTTGCG 61.605 61.111 5.11 0.00 0.00 4.85
3069 16215 1.153997 GTTCAGTCCGAGTCGAGCC 60.154 63.158 15.64 0.77 0.00 4.70
3073 16219 0.725118 GTCGTGTTCAGTCCGAGTCG 60.725 60.000 5.29 5.29 0.00 4.18
3171 16905 2.691011 GTTCTGTTGCCACAAAAGGGTA 59.309 45.455 0.00 0.00 30.36 3.69
3229 16963 4.020617 CTCCACTGCGCTCCCCAA 62.021 66.667 9.73 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.