Multiple sequence alignment - TraesCS5B01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G326700 chr5B 100.000 3059 0 0 1 3059 510886544 510889602 0.000000e+00 5650.0
1 TraesCS5B01G326700 chr5B 93.874 1812 94 8 658 2463 511026528 511028328 0.000000e+00 2715.0
2 TraesCS5B01G326700 chr5B 86.125 1636 190 19 814 2430 511072164 511073781 0.000000e+00 1729.0
3 TraesCS5B01G326700 chr5B 83.535 1652 216 32 812 2435 511064111 511065734 0.000000e+00 1493.0
4 TraesCS5B01G326700 chr5B 79.026 1869 318 46 591 2435 510727924 510726106 0.000000e+00 1212.0
5 TraesCS5B01G326700 chr5B 86.047 215 15 6 2722 2931 511028860 511029064 1.850000e-52 217.0
6 TraesCS5B01G326700 chr5B 86.875 160 8 7 2482 2635 511028703 511028855 1.890000e-37 167.0
7 TraesCS5B01G326700 chr5B 100.000 64 0 0 337 400 660697934 660697997 5.360000e-23 119.0
8 TraesCS5B01G326700 chr5B 90.110 91 5 1 2635 2721 664882859 664882949 6.930000e-22 115.0
9 TraesCS5B01G326700 chr5D 96.243 2076 57 5 571 2637 423317401 423319464 0.000000e+00 3382.0
10 TraesCS5B01G326700 chr5D 84.303 1650 204 34 811 2430 423370809 423372433 0.000000e+00 1561.0
11 TraesCS5B01G326700 chr5D 83.373 1684 225 31 812 2463 423328880 423330540 0.000000e+00 1507.0
12 TraesCS5B01G326700 chr5D 80.758 1689 255 43 725 2391 423322491 423324131 0.000000e+00 1254.0
13 TraesCS5B01G326700 chr5D 81.684 1152 162 36 1149 2287 423334959 423336074 0.000000e+00 913.0
14 TraesCS5B01G326700 chr5D 82.019 1040 156 22 1410 2435 423350124 423351146 0.000000e+00 856.0
15 TraesCS5B01G326700 chr5D 90.079 252 14 6 208 456 423268748 423268991 1.770000e-82 316.0
16 TraesCS5B01G326700 chr5D 95.035 141 4 2 2720 2857 423319465 423319605 5.140000e-53 219.0
17 TraesCS5B01G326700 chr5D 94.949 99 5 0 2958 3056 423319680 423319778 4.080000e-34 156.0
18 TraesCS5B01G326700 chr5A 95.947 2023 68 5 624 2637 536796674 536798691 0.000000e+00 3269.0
19 TraesCS5B01G326700 chr5A 88.222 1800 169 16 638 2424 536858269 536860038 0.000000e+00 2109.0
20 TraesCS5B01G326700 chr5A 84.867 1652 195 24 811 2430 536869675 536871303 0.000000e+00 1615.0
21 TraesCS5B01G326700 chr5A 83.995 1612 196 35 638 2240 536852977 536854535 0.000000e+00 1491.0
22 TraesCS5B01G326700 chr5A 79.432 1867 324 39 591 2435 536676525 536674697 0.000000e+00 1266.0
23 TraesCS5B01G326700 chr5A 90.123 243 12 4 2720 2958 536798692 536798926 3.830000e-79 305.0
24 TraesCS5B01G326700 chr5A 92.157 102 8 0 2958 3059 536798975 536799076 8.840000e-31 145.0
25 TraesCS5B01G326700 chr5A 83.478 115 11 6 2729 2836 536860574 536860687 1.940000e-17 100.0
26 TraesCS5B01G326700 chr5A 81.053 95 13 4 525 617 536852884 536852975 1.520000e-08 71.3
27 TraesCS5B01G326700 chr5A 95.455 44 1 1 571 613 536796637 536796680 5.470000e-08 69.4
28 TraesCS5B01G326700 chr5A 100.000 37 0 0 581 617 536858231 536858267 5.470000e-08 69.4
29 TraesCS5B01G326700 chr5A 93.333 45 3 0 2552 2596 536860519 536860563 1.970000e-07 67.6
30 TraesCS5B01G326700 chr3D 92.718 206 12 3 1 204 95500875 95501079 8.290000e-76 294.0
31 TraesCS5B01G326700 chr2B 92.308 208 13 3 1 206 655521767 655521973 2.980000e-75 292.0
32 TraesCS5B01G326700 chr2B 91.827 208 14 3 1 206 108163484 108163690 1.390000e-73 287.0
33 TraesCS5B01G326700 chr2B 91.827 208 13 4 1 206 731523864 731524069 1.390000e-73 287.0
34 TraesCS5B01G326700 chr3B 91.827 208 14 3 1 206 519054609 519054815 1.390000e-73 287.0
35 TraesCS5B01G326700 chr3B 91.954 87 5 2 2635 2721 130117936 130118020 1.490000e-23 121.0
36 TraesCS5B01G326700 chr7D 91.304 207 16 2 1 206 6791718 6791513 6.460000e-72 281.0
37 TraesCS5B01G326700 chr4B 91.388 209 13 5 1 205 2487471 2487678 6.460000e-72 281.0
38 TraesCS5B01G326700 chr1B 91.346 208 15 3 1 206 587021818 587021612 6.460000e-72 281.0
39 TraesCS5B01G326700 chr1B 91.346 208 15 3 1 206 652279177 652278971 6.460000e-72 281.0
40 TraesCS5B01G326700 chr1B 90.816 98 3 2 2631 2722 168351780 168351877 3.200000e-25 126.0
41 TraesCS5B01G326700 chr1B 90.426 94 3 2 2635 2722 168351877 168351784 5.360000e-23 119.0
42 TraesCS5B01G326700 chr2A 93.258 89 4 1 2636 2722 71661282 71661370 2.480000e-26 130.0
43 TraesCS5B01G326700 chr2A 92.308 91 5 1 2633 2721 71661372 71661282 8.900000e-26 128.0
44 TraesCS5B01G326700 chr2A 90.698 86 8 0 2636 2721 751801610 751801695 6.930000e-22 115.0
45 TraesCS5B01G326700 chr2D 93.182 88 4 1 2636 2721 427445881 427445968 8.900000e-26 128.0
46 TraesCS5B01G326700 chr3A 90.217 92 5 1 2634 2721 732768758 732768849 1.930000e-22 117.0
47 TraesCS5B01G326700 chr4D 100.000 32 0 0 220 251 108217788 108217819 3.290000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G326700 chr5B 510886544 510889602 3058 False 5650.000000 5650 100.000000 1 3059 1 chr5B.!!$F1 3058
1 TraesCS5B01G326700 chr5B 511072164 511073781 1617 False 1729.000000 1729 86.125000 814 2430 1 chr5B.!!$F3 1616
2 TraesCS5B01G326700 chr5B 511064111 511065734 1623 False 1493.000000 1493 83.535000 812 2435 1 chr5B.!!$F2 1623
3 TraesCS5B01G326700 chr5B 510726106 510727924 1818 True 1212.000000 1212 79.026000 591 2435 1 chr5B.!!$R1 1844
4 TraesCS5B01G326700 chr5B 511026528 511029064 2536 False 1033.000000 2715 88.932000 658 2931 3 chr5B.!!$F6 2273
5 TraesCS5B01G326700 chr5D 423370809 423372433 1624 False 1561.000000 1561 84.303000 811 2430 1 chr5D.!!$F5 1619
6 TraesCS5B01G326700 chr5D 423328880 423330540 1660 False 1507.000000 1507 83.373000 812 2463 1 chr5D.!!$F2 1651
7 TraesCS5B01G326700 chr5D 423317401 423324131 6730 False 1252.750000 3382 91.746250 571 3056 4 chr5D.!!$F6 2485
8 TraesCS5B01G326700 chr5D 423334959 423336074 1115 False 913.000000 913 81.684000 1149 2287 1 chr5D.!!$F3 1138
9 TraesCS5B01G326700 chr5D 423350124 423351146 1022 False 856.000000 856 82.019000 1410 2435 1 chr5D.!!$F4 1025
10 TraesCS5B01G326700 chr5A 536869675 536871303 1628 False 1615.000000 1615 84.867000 811 2430 1 chr5A.!!$F1 1619
11 TraesCS5B01G326700 chr5A 536674697 536676525 1828 True 1266.000000 1266 79.432000 591 2435 1 chr5A.!!$R1 1844
12 TraesCS5B01G326700 chr5A 536796637 536799076 2439 False 947.100000 3269 93.420500 571 3059 4 chr5A.!!$F2 2488
13 TraesCS5B01G326700 chr5A 536852884 536860687 7803 False 651.383333 2109 88.346833 525 2836 6 chr5A.!!$F3 2311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.035056 CCTGGGCTCGTCTTTGGATT 60.035 55.0 0.00 0.00 0.00 3.01 F
579 581 0.038159 GTCCAGTCGAGTCCCAACTG 60.038 60.0 7.63 7.63 40.05 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 1210 1.339097 AACAGACAAGGTCTAGCCGT 58.661 50.0 0.00 0.0 41.37 5.68 R
2540 8378 0.890996 CTCCCAGCGCAGAAAAAGGT 60.891 55.0 11.47 0.0 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.753877 GAAAGCCGCCGCCGTTTC 62.754 66.667 0.00 0.00 34.57 2.78
25 26 3.788766 CCGCCGTTTCGCCTTCTG 61.789 66.667 0.00 0.00 0.00 3.02
26 27 2.736995 CGCCGTTTCGCCTTCTGA 60.737 61.111 0.00 0.00 0.00 3.27
27 28 2.730672 CGCCGTTTCGCCTTCTGAG 61.731 63.158 0.00 0.00 0.00 3.35
28 29 3.028366 GCCGTTTCGCCTTCTGAGC 62.028 63.158 0.00 0.00 0.00 4.26
29 30 1.667830 CCGTTTCGCCTTCTGAGCA 60.668 57.895 0.00 0.00 0.00 4.26
30 31 1.630244 CCGTTTCGCCTTCTGAGCAG 61.630 60.000 0.00 0.00 0.00 4.24
31 32 0.667487 CGTTTCGCCTTCTGAGCAGA 60.667 55.000 0.00 0.00 35.27 4.26
32 33 1.512926 GTTTCGCCTTCTGAGCAGAA 58.487 50.000 11.98 11.98 44.47 3.02
33 34 1.195674 GTTTCGCCTTCTGAGCAGAAC 59.804 52.381 8.76 0.57 42.06 3.01
34 35 0.392706 TTCGCCTTCTGAGCAGAACA 59.607 50.000 8.76 0.00 42.06 3.18
35 36 0.319900 TCGCCTTCTGAGCAGAACAC 60.320 55.000 8.76 3.80 42.06 3.32
36 37 0.601046 CGCCTTCTGAGCAGAACACA 60.601 55.000 8.76 0.00 42.06 3.72
37 38 1.597742 GCCTTCTGAGCAGAACACAA 58.402 50.000 8.76 0.00 42.06 3.33
38 39 1.949525 GCCTTCTGAGCAGAACACAAA 59.050 47.619 8.76 0.00 42.06 2.83
39 40 2.287248 GCCTTCTGAGCAGAACACAAAC 60.287 50.000 8.76 0.00 42.06 2.93
40 41 2.291741 CCTTCTGAGCAGAACACAAACC 59.708 50.000 8.76 0.00 42.06 3.27
41 42 1.967319 TCTGAGCAGAACACAAACCC 58.033 50.000 0.00 0.00 33.91 4.11
42 43 1.490490 TCTGAGCAGAACACAAACCCT 59.510 47.619 0.00 0.00 33.91 4.34
43 44 2.703536 TCTGAGCAGAACACAAACCCTA 59.296 45.455 0.00 0.00 33.91 3.53
44 45 3.135712 TCTGAGCAGAACACAAACCCTAA 59.864 43.478 0.00 0.00 33.91 2.69
45 46 3.211045 TGAGCAGAACACAAACCCTAAC 58.789 45.455 0.00 0.00 0.00 2.34
46 47 2.218603 AGCAGAACACAAACCCTAACG 58.781 47.619 0.00 0.00 0.00 3.18
47 48 2.158871 AGCAGAACACAAACCCTAACGA 60.159 45.455 0.00 0.00 0.00 3.85
48 49 2.614983 GCAGAACACAAACCCTAACGAA 59.385 45.455 0.00 0.00 0.00 3.85
49 50 3.065648 GCAGAACACAAACCCTAACGAAA 59.934 43.478 0.00 0.00 0.00 3.46
50 51 4.594136 CAGAACACAAACCCTAACGAAAC 58.406 43.478 0.00 0.00 0.00 2.78
51 52 4.334481 CAGAACACAAACCCTAACGAAACT 59.666 41.667 0.00 0.00 0.00 2.66
52 53 4.334481 AGAACACAAACCCTAACGAAACTG 59.666 41.667 0.00 0.00 0.00 3.16
53 54 3.876341 ACACAAACCCTAACGAAACTGA 58.124 40.909 0.00 0.00 0.00 3.41
54 55 4.263435 ACACAAACCCTAACGAAACTGAA 58.737 39.130 0.00 0.00 0.00 3.02
55 56 4.701171 ACACAAACCCTAACGAAACTGAAA 59.299 37.500 0.00 0.00 0.00 2.69
56 57 5.163693 ACACAAACCCTAACGAAACTGAAAG 60.164 40.000 0.00 0.00 42.29 2.62
57 58 4.337274 ACAAACCCTAACGAAACTGAAAGG 59.663 41.667 0.00 0.00 39.30 3.11
58 59 4.426736 AACCCTAACGAAACTGAAAGGA 57.573 40.909 0.00 0.00 39.30 3.36
59 60 4.004196 ACCCTAACGAAACTGAAAGGAG 57.996 45.455 0.00 0.00 39.30 3.69
60 61 2.742589 CCCTAACGAAACTGAAAGGAGC 59.257 50.000 0.00 0.00 39.30 4.70
61 62 2.412089 CCTAACGAAACTGAAAGGAGCG 59.588 50.000 0.00 0.00 39.30 5.03
62 63 2.234300 AACGAAACTGAAAGGAGCGA 57.766 45.000 0.00 0.00 39.30 4.93
63 64 1.499049 ACGAAACTGAAAGGAGCGAC 58.501 50.000 0.00 0.00 39.30 5.19
64 65 1.068741 ACGAAACTGAAAGGAGCGACT 59.931 47.619 0.00 0.00 39.30 4.18
65 66 2.295349 ACGAAACTGAAAGGAGCGACTA 59.705 45.455 0.00 0.00 39.30 2.59
66 67 3.243636 ACGAAACTGAAAGGAGCGACTAA 60.244 43.478 0.00 0.00 39.30 2.24
67 68 3.739300 CGAAACTGAAAGGAGCGACTAAA 59.261 43.478 0.00 0.00 39.30 1.85
68 69 4.210537 CGAAACTGAAAGGAGCGACTAAAA 59.789 41.667 0.00 0.00 39.30 1.52
69 70 5.277154 CGAAACTGAAAGGAGCGACTAAAAA 60.277 40.000 0.00 0.00 39.30 1.94
70 71 6.565999 CGAAACTGAAAGGAGCGACTAAAAAT 60.566 38.462 0.00 0.00 39.30 1.82
71 72 5.613358 ACTGAAAGGAGCGACTAAAAATG 57.387 39.130 0.00 0.00 39.30 2.32
72 73 5.305585 ACTGAAAGGAGCGACTAAAAATGA 58.694 37.500 0.00 0.00 39.30 2.57
73 74 5.763204 ACTGAAAGGAGCGACTAAAAATGAA 59.237 36.000 0.00 0.00 39.30 2.57
74 75 6.073003 ACTGAAAGGAGCGACTAAAAATGAAG 60.073 38.462 0.00 0.00 39.30 3.02
75 76 4.686839 AAGGAGCGACTAAAAATGAAGC 57.313 40.909 0.00 0.00 0.00 3.86
76 77 3.010420 AGGAGCGACTAAAAATGAAGCC 58.990 45.455 0.00 0.00 0.00 4.35
77 78 2.097629 GGAGCGACTAAAAATGAAGCCC 59.902 50.000 0.00 0.00 0.00 5.19
78 79 2.092323 AGCGACTAAAAATGAAGCCCC 58.908 47.619 0.00 0.00 0.00 5.80
79 80 1.134367 GCGACTAAAAATGAAGCCCCC 59.866 52.381 0.00 0.00 0.00 5.40
103 104 2.276740 CCCTTGGCAGGATCCACC 59.723 66.667 15.82 15.54 44.19 4.61
104 105 2.124570 CCTTGGCAGGATCCACCG 60.125 66.667 15.82 2.75 44.19 4.94
105 106 2.825836 CTTGGCAGGATCCACCGC 60.826 66.667 15.82 13.20 44.74 5.68
106 107 4.776322 TTGGCAGGATCCACCGCG 62.776 66.667 15.82 0.00 44.74 6.46
110 111 4.899239 CAGGATCCACCGCGCCTC 62.899 72.222 15.82 0.00 44.74 4.70
113 114 4.241555 GATCCACCGCGCCTCCAT 62.242 66.667 0.00 0.00 0.00 3.41
114 115 4.552365 ATCCACCGCGCCTCCATG 62.552 66.667 0.00 0.00 0.00 3.66
133 134 2.368594 CCCTAGGGCCACTGGAGA 59.631 66.667 16.90 0.00 0.00 3.71
134 135 2.066999 CCCTAGGGCCACTGGAGAC 61.067 68.421 16.90 0.00 0.00 3.36
135 136 2.427245 CCTAGGGCCACTGGAGACG 61.427 68.421 6.18 0.00 0.00 4.18
136 137 1.379977 CTAGGGCCACTGGAGACGA 60.380 63.158 6.18 0.00 0.00 4.20
137 138 1.379977 TAGGGCCACTGGAGACGAG 60.380 63.158 6.18 0.00 0.00 4.18
138 139 2.856039 TAGGGCCACTGGAGACGAGG 62.856 65.000 6.18 0.00 0.00 4.63
139 140 4.459089 GGCCACTGGAGACGAGGC 62.459 72.222 0.00 0.00 38.87 4.70
140 141 4.803426 GCCACTGGAGACGAGGCG 62.803 72.222 0.00 0.00 33.16 5.52
141 142 4.135153 CCACTGGAGACGAGGCGG 62.135 72.222 0.00 0.00 0.00 6.13
142 143 3.062466 CACTGGAGACGAGGCGGA 61.062 66.667 0.00 0.00 0.00 5.54
143 144 3.063084 ACTGGAGACGAGGCGGAC 61.063 66.667 0.00 0.00 0.00 4.79
144 145 3.827898 CTGGAGACGAGGCGGACC 61.828 72.222 0.00 0.00 0.00 4.46
165 166 3.760035 GTCGGAGCCGGCAAGAGA 61.760 66.667 31.54 18.99 44.22 3.10
166 167 3.760035 TCGGAGCCGGCAAGAGAC 61.760 66.667 31.54 11.86 40.25 3.36
167 168 4.069232 CGGAGCCGGCAAGAGACA 62.069 66.667 31.54 0.00 35.56 3.41
168 169 2.125350 GGAGCCGGCAAGAGACAG 60.125 66.667 31.54 0.00 0.00 3.51
169 170 2.650116 GGAGCCGGCAAGAGACAGA 61.650 63.158 31.54 0.00 0.00 3.41
170 171 1.293498 GAGCCGGCAAGAGACAGAA 59.707 57.895 31.54 0.00 0.00 3.02
171 172 0.320771 GAGCCGGCAAGAGACAGAAA 60.321 55.000 31.54 0.00 0.00 2.52
172 173 0.603975 AGCCGGCAAGAGACAGAAAC 60.604 55.000 31.54 0.00 0.00 2.78
173 174 1.578206 GCCGGCAAGAGACAGAAACC 61.578 60.000 24.80 0.00 0.00 3.27
174 175 0.955919 CCGGCAAGAGACAGAAACCC 60.956 60.000 0.00 0.00 0.00 4.11
175 176 0.035458 CGGCAAGAGACAGAAACCCT 59.965 55.000 0.00 0.00 0.00 4.34
176 177 1.275291 CGGCAAGAGACAGAAACCCTA 59.725 52.381 0.00 0.00 0.00 3.53
177 178 2.675317 CGGCAAGAGACAGAAACCCTAG 60.675 54.545 0.00 0.00 0.00 3.02
178 179 2.351455 GCAAGAGACAGAAACCCTAGC 58.649 52.381 0.00 0.00 0.00 3.42
179 180 2.027653 GCAAGAGACAGAAACCCTAGCT 60.028 50.000 0.00 0.00 0.00 3.32
180 181 3.594134 CAAGAGACAGAAACCCTAGCTG 58.406 50.000 0.00 0.00 35.81 4.24
181 182 3.176924 AGAGACAGAAACCCTAGCTGA 57.823 47.619 0.00 0.00 33.94 4.26
182 183 3.718723 AGAGACAGAAACCCTAGCTGAT 58.281 45.455 0.00 0.00 33.94 2.90
183 184 4.100373 AGAGACAGAAACCCTAGCTGATT 58.900 43.478 0.00 0.00 33.94 2.57
184 185 4.534103 AGAGACAGAAACCCTAGCTGATTT 59.466 41.667 0.00 0.00 33.94 2.17
185 186 5.013599 AGAGACAGAAACCCTAGCTGATTTT 59.986 40.000 0.00 0.00 33.94 1.82
186 187 5.635120 AGACAGAAACCCTAGCTGATTTTT 58.365 37.500 0.00 0.00 33.94 1.94
205 206 2.789409 TTTTAGCAGGAGGAAGAGGC 57.211 50.000 0.00 0.00 0.00 4.70
206 207 0.912486 TTTAGCAGGAGGAAGAGGCC 59.088 55.000 0.00 0.00 0.00 5.19
207 208 0.983378 TTAGCAGGAGGAAGAGGCCC 60.983 60.000 0.00 0.00 0.00 5.80
208 209 2.898472 TAGCAGGAGGAAGAGGCCCC 62.898 65.000 0.00 0.00 0.00 5.80
209 210 2.041928 CAGGAGGAAGAGGCCCCT 59.958 66.667 0.00 0.00 35.02 4.79
210 211 2.069430 CAGGAGGAAGAGGCCCCTC 61.069 68.421 15.50 15.50 46.29 4.30
212 213 2.042843 GAGGAAGAGGCCCCTCGA 60.043 66.667 9.70 0.00 46.90 4.04
213 214 2.042435 AGGAAGAGGCCCCTCGAG 60.042 66.667 5.13 5.13 46.90 4.04
214 215 3.855853 GGAAGAGGCCCCTCGAGC 61.856 72.222 6.99 0.00 46.90 5.03
215 216 4.214327 GAAGAGGCCCCTCGAGCG 62.214 72.222 6.99 0.00 46.90 5.03
218 219 3.145551 GAGGCCCCTCGAGCGTTA 61.146 66.667 6.99 0.00 33.06 3.18
219 220 2.444140 AGGCCCCTCGAGCGTTAT 60.444 61.111 6.99 0.00 0.00 1.89
220 221 2.029307 GAGGCCCCTCGAGCGTTATT 62.029 60.000 6.99 0.00 33.06 1.40
221 222 1.594564 GGCCCCTCGAGCGTTATTC 60.595 63.158 6.99 0.00 0.00 1.75
222 223 1.143183 GCCCCTCGAGCGTTATTCA 59.857 57.895 6.99 0.00 0.00 2.57
223 224 1.152383 GCCCCTCGAGCGTTATTCAC 61.152 60.000 6.99 0.00 0.00 3.18
224 225 0.529992 CCCCTCGAGCGTTATTCACC 60.530 60.000 6.99 0.00 0.00 4.02
225 226 0.174845 CCCTCGAGCGTTATTCACCA 59.825 55.000 6.99 0.00 0.00 4.17
226 227 1.202533 CCCTCGAGCGTTATTCACCAT 60.203 52.381 6.99 0.00 0.00 3.55
227 228 1.860950 CCTCGAGCGTTATTCACCATG 59.139 52.381 6.99 0.00 0.00 3.66
228 229 2.481276 CCTCGAGCGTTATTCACCATGA 60.481 50.000 6.99 0.00 0.00 3.07
229 230 3.186909 CTCGAGCGTTATTCACCATGAA 58.813 45.455 0.00 0.00 41.09 2.57
230 231 3.591023 TCGAGCGTTATTCACCATGAAA 58.409 40.909 0.00 0.00 40.12 2.69
231 232 3.997681 TCGAGCGTTATTCACCATGAAAA 59.002 39.130 0.00 0.00 40.12 2.29
232 233 4.634004 TCGAGCGTTATTCACCATGAAAAT 59.366 37.500 0.00 0.00 40.12 1.82
233 234 5.123186 TCGAGCGTTATTCACCATGAAAATT 59.877 36.000 0.00 0.00 40.12 1.82
234 235 5.799936 CGAGCGTTATTCACCATGAAAATTT 59.200 36.000 0.00 0.00 40.12 1.82
235 236 6.237279 CGAGCGTTATTCACCATGAAAATTTG 60.237 38.462 0.00 0.00 40.12 2.32
236 237 5.348451 AGCGTTATTCACCATGAAAATTTGC 59.652 36.000 0.00 0.00 40.12 3.68
237 238 5.119898 GCGTTATTCACCATGAAAATTTGCA 59.880 36.000 0.07 0.07 40.12 4.08
238 239 6.524490 CGTTATTCACCATGAAAATTTGCAC 58.476 36.000 0.00 0.00 40.12 4.57
239 240 6.400940 CGTTATTCACCATGAAAATTTGCACC 60.401 38.462 0.00 0.00 40.12 5.01
240 241 3.399440 TCACCATGAAAATTTGCACCC 57.601 42.857 0.00 0.00 0.00 4.61
241 242 2.971330 TCACCATGAAAATTTGCACCCT 59.029 40.909 0.00 0.00 0.00 4.34
242 243 3.006752 TCACCATGAAAATTTGCACCCTC 59.993 43.478 0.00 0.00 0.00 4.30
243 244 2.302733 ACCATGAAAATTTGCACCCTCC 59.697 45.455 0.00 0.00 0.00 4.30
244 245 2.568509 CCATGAAAATTTGCACCCTCCT 59.431 45.455 0.00 0.00 0.00 3.69
245 246 3.768757 CCATGAAAATTTGCACCCTCCTA 59.231 43.478 0.00 0.00 0.00 2.94
246 247 4.142093 CCATGAAAATTTGCACCCTCCTAG 60.142 45.833 0.00 0.00 0.00 3.02
247 248 2.825532 TGAAAATTTGCACCCTCCTAGC 59.174 45.455 0.00 0.00 0.00 3.42
248 249 2.603075 AAATTTGCACCCTCCTAGCA 57.397 45.000 0.00 0.00 36.32 3.49
249 250 1.839424 AATTTGCACCCTCCTAGCAC 58.161 50.000 0.00 0.00 38.11 4.40
250 251 0.698238 ATTTGCACCCTCCTAGCACA 59.302 50.000 0.00 0.00 38.11 4.57
251 252 0.250727 TTTGCACCCTCCTAGCACAC 60.251 55.000 0.00 0.00 38.11 3.82
252 253 1.127567 TTGCACCCTCCTAGCACACT 61.128 55.000 0.00 0.00 38.11 3.55
253 254 1.219393 GCACCCTCCTAGCACACTC 59.781 63.158 0.00 0.00 0.00 3.51
254 255 1.544825 GCACCCTCCTAGCACACTCA 61.545 60.000 0.00 0.00 0.00 3.41
255 256 0.976641 CACCCTCCTAGCACACTCAA 59.023 55.000 0.00 0.00 0.00 3.02
256 257 1.066573 CACCCTCCTAGCACACTCAAG 60.067 57.143 0.00 0.00 0.00 3.02
257 258 0.107945 CCCTCCTAGCACACTCAAGC 60.108 60.000 0.00 0.00 0.00 4.01
258 259 0.610174 CCTCCTAGCACACTCAAGCA 59.390 55.000 0.00 0.00 0.00 3.91
259 260 1.209019 CCTCCTAGCACACTCAAGCAT 59.791 52.381 0.00 0.00 0.00 3.79
260 261 2.548875 CTCCTAGCACACTCAAGCATC 58.451 52.381 0.00 0.00 0.00 3.91
261 262 2.168106 CTCCTAGCACACTCAAGCATCT 59.832 50.000 0.00 0.00 0.00 2.90
262 263 2.568956 TCCTAGCACACTCAAGCATCTT 59.431 45.455 0.00 0.00 0.00 2.40
263 264 3.008375 TCCTAGCACACTCAAGCATCTTT 59.992 43.478 0.00 0.00 0.00 2.52
264 265 3.126514 CCTAGCACACTCAAGCATCTTTG 59.873 47.826 0.00 0.00 0.00 2.77
265 266 2.579873 AGCACACTCAAGCATCTTTGT 58.420 42.857 0.00 0.00 0.00 2.83
266 267 2.954318 AGCACACTCAAGCATCTTTGTT 59.046 40.909 0.00 0.00 0.00 2.83
267 268 3.047796 GCACACTCAAGCATCTTTGTTG 58.952 45.455 0.00 0.00 0.00 3.33
268 269 3.243168 GCACACTCAAGCATCTTTGTTGA 60.243 43.478 0.00 0.00 0.00 3.18
269 270 4.285292 CACACTCAAGCATCTTTGTTGAC 58.715 43.478 0.00 0.00 0.00 3.18
270 271 3.947196 ACACTCAAGCATCTTTGTTGACA 59.053 39.130 0.00 0.00 0.00 3.58
271 272 4.036027 ACACTCAAGCATCTTTGTTGACAG 59.964 41.667 0.00 0.00 0.00 3.51
272 273 4.036027 CACTCAAGCATCTTTGTTGACAGT 59.964 41.667 0.00 0.00 0.00 3.55
273 274 4.641989 ACTCAAGCATCTTTGTTGACAGTT 59.358 37.500 0.00 0.00 0.00 3.16
274 275 5.126061 ACTCAAGCATCTTTGTTGACAGTTT 59.874 36.000 0.00 0.00 0.00 2.66
275 276 5.964758 TCAAGCATCTTTGTTGACAGTTTT 58.035 33.333 0.00 0.00 0.00 2.43
276 277 6.397272 TCAAGCATCTTTGTTGACAGTTTTT 58.603 32.000 0.00 0.00 0.00 1.94
297 298 6.817765 TTTTTCCTGCTATTTCTGTCGAAT 57.182 33.333 0.00 0.00 0.00 3.34
298 299 6.817765 TTTTCCTGCTATTTCTGTCGAATT 57.182 33.333 0.00 0.00 0.00 2.17
299 300 6.817765 TTTCCTGCTATTTCTGTCGAATTT 57.182 33.333 0.00 0.00 0.00 1.82
300 301 7.915293 TTTCCTGCTATTTCTGTCGAATTTA 57.085 32.000 0.00 0.00 0.00 1.40
301 302 7.915293 TTCCTGCTATTTCTGTCGAATTTAA 57.085 32.000 0.00 0.00 0.00 1.52
302 303 8.506168 TTCCTGCTATTTCTGTCGAATTTAAT 57.494 30.769 0.00 0.00 0.00 1.40
303 304 9.607988 TTCCTGCTATTTCTGTCGAATTTAATA 57.392 29.630 0.00 0.00 0.00 0.98
304 305 9.778741 TCCTGCTATTTCTGTCGAATTTAATAT 57.221 29.630 0.00 0.00 0.00 1.28
329 330 8.868522 TTCATTAAATATTAGATGAGCCTGGG 57.131 34.615 11.35 0.00 30.92 4.45
330 331 6.886459 TCATTAAATATTAGATGAGCCTGGGC 59.114 38.462 3.00 3.00 42.33 5.36
340 341 2.747855 GCCTGGGCTCGTCTTTGG 60.748 66.667 4.12 0.00 38.26 3.28
341 342 3.068881 CCTGGGCTCGTCTTTGGA 58.931 61.111 0.00 0.00 0.00 3.53
342 343 1.604378 CCTGGGCTCGTCTTTGGAT 59.396 57.895 0.00 0.00 0.00 3.41
343 344 0.035056 CCTGGGCTCGTCTTTGGATT 60.035 55.000 0.00 0.00 0.00 3.01
344 345 1.209504 CCTGGGCTCGTCTTTGGATTA 59.790 52.381 0.00 0.00 0.00 1.75
345 346 2.158755 CCTGGGCTCGTCTTTGGATTAT 60.159 50.000 0.00 0.00 0.00 1.28
346 347 3.134458 CTGGGCTCGTCTTTGGATTATC 58.866 50.000 0.00 0.00 0.00 1.75
347 348 2.135933 GGGCTCGTCTTTGGATTATCG 58.864 52.381 0.00 0.00 0.00 2.92
348 349 2.223971 GGGCTCGTCTTTGGATTATCGA 60.224 50.000 0.00 0.00 0.00 3.59
349 350 3.555168 GGGCTCGTCTTTGGATTATCGAT 60.555 47.826 2.16 2.16 0.00 3.59
350 351 4.321750 GGGCTCGTCTTTGGATTATCGATA 60.322 45.833 0.00 0.00 0.00 2.92
351 352 5.411781 GGCTCGTCTTTGGATTATCGATAT 58.588 41.667 5.84 0.00 0.00 1.63
352 353 5.869888 GGCTCGTCTTTGGATTATCGATATT 59.130 40.000 5.84 2.43 0.00 1.28
353 354 6.183360 GGCTCGTCTTTGGATTATCGATATTG 60.183 42.308 5.84 0.00 0.00 1.90
354 355 6.366332 GCTCGTCTTTGGATTATCGATATTGT 59.634 38.462 5.84 0.00 0.00 2.71
355 356 7.410942 GCTCGTCTTTGGATTATCGATATTGTC 60.411 40.741 5.84 5.35 0.00 3.18
371 372 2.106477 TGTCGTAGGCAATGCAATGA 57.894 45.000 5.79 2.45 42.02 2.57
372 373 2.642427 TGTCGTAGGCAATGCAATGAT 58.358 42.857 5.79 0.00 42.02 2.45
373 374 3.802866 TGTCGTAGGCAATGCAATGATA 58.197 40.909 5.79 1.03 42.02 2.15
374 375 4.388485 TGTCGTAGGCAATGCAATGATAT 58.612 39.130 5.79 0.00 42.02 1.63
375 376 4.452114 TGTCGTAGGCAATGCAATGATATC 59.548 41.667 5.79 0.00 42.02 1.63
376 377 4.452114 GTCGTAGGCAATGCAATGATATCA 59.548 41.667 8.10 8.10 0.00 2.15
377 378 5.122869 GTCGTAGGCAATGCAATGATATCAT 59.877 40.000 12.62 12.62 38.41 2.45
378 379 5.352293 TCGTAGGCAATGCAATGATATCATC 59.648 40.000 18.44 7.94 35.10 2.92
379 380 5.122711 CGTAGGCAATGCAATGATATCATCA 59.877 40.000 18.44 13.22 44.55 3.07
380 381 6.348704 CGTAGGCAATGCAATGATATCATCAA 60.349 38.462 18.44 7.86 43.50 2.57
381 382 6.025749 AGGCAATGCAATGATATCATCAAG 57.974 37.500 18.44 12.31 43.50 3.02
382 383 5.773176 AGGCAATGCAATGATATCATCAAGA 59.227 36.000 18.44 4.22 43.50 3.02
383 384 6.437477 AGGCAATGCAATGATATCATCAAGAT 59.563 34.615 18.44 6.23 43.50 2.40
384 385 6.752351 GGCAATGCAATGATATCATCAAGATC 59.248 38.462 18.44 6.05 43.50 2.75
385 386 7.363007 GGCAATGCAATGATATCATCAAGATCT 60.363 37.037 18.44 0.00 43.50 2.75
386 387 8.674607 GCAATGCAATGATATCATCAAGATCTA 58.325 33.333 18.44 1.25 43.50 1.98
388 389 9.961264 AATGCAATGATATCATCAAGATCTAGT 57.039 29.630 18.44 0.00 43.50 2.57
389 390 9.961264 ATGCAATGATATCATCAAGATCTAGTT 57.039 29.630 18.44 0.00 43.50 2.24
390 391 9.433153 TGCAATGATATCATCAAGATCTAGTTC 57.567 33.333 18.44 0.00 43.50 3.01
391 392 8.593842 GCAATGATATCATCAAGATCTAGTTCG 58.406 37.037 18.44 0.00 43.50 3.95
392 393 9.085250 CAATGATATCATCAAGATCTAGTTCGG 57.915 37.037 18.44 0.00 43.50 4.30
393 394 7.767250 TGATATCATCAAGATCTAGTTCGGT 57.233 36.000 0.00 0.00 38.19 4.69
394 395 8.183104 TGATATCATCAAGATCTAGTTCGGTT 57.817 34.615 0.00 0.00 38.19 4.44
395 396 9.297037 TGATATCATCAAGATCTAGTTCGGTTA 57.703 33.333 0.00 0.00 38.19 2.85
399 400 9.838339 ATCATCAAGATCTAGTTCGGTTAAATT 57.162 29.630 0.00 0.00 28.20 1.82
400 401 9.098355 TCATCAAGATCTAGTTCGGTTAAATTG 57.902 33.333 0.00 0.00 0.00 2.32
401 402 7.303634 TCAAGATCTAGTTCGGTTAAATTGC 57.696 36.000 0.00 0.00 0.00 3.56
402 403 7.103641 TCAAGATCTAGTTCGGTTAAATTGCT 58.896 34.615 0.00 0.00 0.00 3.91
403 404 8.255206 TCAAGATCTAGTTCGGTTAAATTGCTA 58.745 33.333 0.00 0.00 0.00 3.49
404 405 8.879759 CAAGATCTAGTTCGGTTAAATTGCTAA 58.120 33.333 0.00 0.00 0.00 3.09
405 406 8.649973 AGATCTAGTTCGGTTAAATTGCTAAG 57.350 34.615 0.00 0.00 0.00 2.18
406 407 8.475639 AGATCTAGTTCGGTTAAATTGCTAAGA 58.524 33.333 0.00 0.00 0.00 2.10
407 408 8.649973 ATCTAGTTCGGTTAAATTGCTAAGAG 57.350 34.615 0.00 0.00 0.00 2.85
408 409 7.039882 TCTAGTTCGGTTAAATTGCTAAGAGG 58.960 38.462 0.00 0.00 0.00 3.69
409 410 5.801380 AGTTCGGTTAAATTGCTAAGAGGA 58.199 37.500 0.00 0.00 0.00 3.71
410 411 5.875359 AGTTCGGTTAAATTGCTAAGAGGAG 59.125 40.000 0.00 0.00 0.00 3.69
411 412 5.670792 TCGGTTAAATTGCTAAGAGGAGA 57.329 39.130 0.00 0.00 0.00 3.71
412 413 5.661458 TCGGTTAAATTGCTAAGAGGAGAG 58.339 41.667 0.00 0.00 0.00 3.20
413 414 5.421056 TCGGTTAAATTGCTAAGAGGAGAGA 59.579 40.000 0.00 0.00 0.00 3.10
414 415 6.070995 TCGGTTAAATTGCTAAGAGGAGAGAA 60.071 38.462 0.00 0.00 0.00 2.87
415 416 6.256757 CGGTTAAATTGCTAAGAGGAGAGAAG 59.743 42.308 0.00 0.00 0.00 2.85
416 417 7.331791 GGTTAAATTGCTAAGAGGAGAGAAGA 58.668 38.462 0.00 0.00 0.00 2.87
417 418 7.494298 GGTTAAATTGCTAAGAGGAGAGAAGAG 59.506 40.741 0.00 0.00 0.00 2.85
418 419 4.670896 ATTGCTAAGAGGAGAGAAGAGC 57.329 45.455 0.00 0.00 0.00 4.09
419 420 2.383855 TGCTAAGAGGAGAGAAGAGCC 58.616 52.381 0.00 0.00 0.00 4.70
420 421 2.291865 TGCTAAGAGGAGAGAAGAGCCA 60.292 50.000 0.00 0.00 0.00 4.75
421 422 2.965147 GCTAAGAGGAGAGAAGAGCCAT 59.035 50.000 0.00 0.00 0.00 4.40
422 423 3.387699 GCTAAGAGGAGAGAAGAGCCATT 59.612 47.826 0.00 0.00 0.00 3.16
423 424 3.910568 AAGAGGAGAGAAGAGCCATTG 57.089 47.619 0.00 0.00 0.00 2.82
424 425 3.113191 AGAGGAGAGAAGAGCCATTGA 57.887 47.619 0.00 0.00 0.00 2.57
425 426 2.765699 AGAGGAGAGAAGAGCCATTGAC 59.234 50.000 0.00 0.00 0.00 3.18
426 427 2.499289 GAGGAGAGAAGAGCCATTGACA 59.501 50.000 0.00 0.00 0.00 3.58
427 428 2.235898 AGGAGAGAAGAGCCATTGACAC 59.764 50.000 0.00 0.00 0.00 3.67
428 429 2.266554 GAGAGAAGAGCCATTGACACG 58.733 52.381 0.00 0.00 0.00 4.49
429 430 1.066573 AGAGAAGAGCCATTGACACGG 60.067 52.381 0.00 0.00 0.00 4.94
430 431 0.976641 AGAAGAGCCATTGACACGGA 59.023 50.000 0.00 0.00 0.00 4.69
431 432 1.066573 AGAAGAGCCATTGACACGGAG 60.067 52.381 0.00 0.00 0.00 4.63
433 434 0.687354 AGAGCCATTGACACGGAGTT 59.313 50.000 0.00 0.00 41.61 3.01
434 435 1.072331 AGAGCCATTGACACGGAGTTT 59.928 47.619 0.00 0.00 41.61 2.66
435 436 1.464997 GAGCCATTGACACGGAGTTTC 59.535 52.381 0.00 0.00 41.61 2.78
436 437 1.072331 AGCCATTGACACGGAGTTTCT 59.928 47.619 0.00 0.00 41.61 2.52
437 438 2.301870 AGCCATTGACACGGAGTTTCTA 59.698 45.455 0.00 0.00 41.61 2.10
438 439 2.415512 GCCATTGACACGGAGTTTCTAC 59.584 50.000 0.00 0.00 41.61 2.59
439 440 3.659786 CCATTGACACGGAGTTTCTACA 58.340 45.455 0.00 0.00 41.61 2.74
440 441 3.432252 CCATTGACACGGAGTTTCTACAC 59.568 47.826 0.00 0.00 41.61 2.90
441 442 4.307432 CATTGACACGGAGTTTCTACACT 58.693 43.478 0.00 0.00 41.61 3.55
442 443 3.637998 TGACACGGAGTTTCTACACTC 57.362 47.619 0.00 0.00 41.61 3.51
443 444 2.031420 TGACACGGAGTTTCTACACTCG 60.031 50.000 0.00 0.00 43.78 4.18
444 445 2.224606 ACACGGAGTTTCTACACTCGA 58.775 47.619 0.00 0.00 43.78 4.04
445 446 2.818432 ACACGGAGTTTCTACACTCGAT 59.182 45.455 0.00 0.00 43.78 3.59
446 447 3.119919 ACACGGAGTTTCTACACTCGATC 60.120 47.826 0.00 0.00 43.78 3.69
447 448 3.127203 CACGGAGTTTCTACACTCGATCT 59.873 47.826 0.00 0.00 43.78 2.75
448 449 3.374678 ACGGAGTTTCTACACTCGATCTC 59.625 47.826 0.00 0.00 43.78 2.75
449 450 3.374367 CGGAGTTTCTACACTCGATCTCA 59.626 47.826 0.00 0.00 43.78 3.27
450 451 4.495019 CGGAGTTTCTACACTCGATCTCAG 60.495 50.000 0.00 0.00 43.78 3.35
451 452 4.636648 GGAGTTTCTACACTCGATCTCAGA 59.363 45.833 0.00 0.00 43.78 3.27
452 453 5.298276 GGAGTTTCTACACTCGATCTCAGAT 59.702 44.000 0.00 0.00 43.78 2.90
453 454 6.130298 AGTTTCTACACTCGATCTCAGATG 57.870 41.667 0.00 0.00 0.00 2.90
454 455 4.560136 TTCTACACTCGATCTCAGATGC 57.440 45.455 0.00 0.00 0.00 3.91
455 456 3.545703 TCTACACTCGATCTCAGATGCA 58.454 45.455 0.00 0.00 0.00 3.96
456 457 4.140536 TCTACACTCGATCTCAGATGCAT 58.859 43.478 0.00 0.00 0.00 3.96
457 458 3.367992 ACACTCGATCTCAGATGCATC 57.632 47.619 19.37 19.37 0.00 3.91
458 459 2.957680 ACACTCGATCTCAGATGCATCT 59.042 45.455 23.75 23.75 37.72 2.90
459 460 3.384146 ACACTCGATCTCAGATGCATCTT 59.616 43.478 26.70 12.53 34.22 2.40
460 461 3.982701 CACTCGATCTCAGATGCATCTTC 59.017 47.826 26.70 19.37 34.22 2.87
461 462 3.236005 CTCGATCTCAGATGCATCTTCG 58.764 50.000 29.77 29.77 35.74 3.79
462 463 2.620585 TCGATCTCAGATGCATCTTCGT 59.379 45.455 32.00 19.00 35.83 3.85
463 464 3.815401 TCGATCTCAGATGCATCTTCGTA 59.185 43.478 32.00 22.13 35.83 3.43
464 465 4.275936 TCGATCTCAGATGCATCTTCGTAA 59.724 41.667 32.00 20.02 35.83 3.18
465 466 4.978580 CGATCTCAGATGCATCTTCGTAAA 59.021 41.667 28.32 13.87 34.22 2.01
466 467 5.108065 CGATCTCAGATGCATCTTCGTAAAC 60.108 44.000 28.32 16.47 34.22 2.01
467 468 5.072040 TCTCAGATGCATCTTCGTAAACA 57.928 39.130 26.70 2.47 34.22 2.83
468 469 5.105063 TCTCAGATGCATCTTCGTAAACAG 58.895 41.667 26.70 12.03 34.22 3.16
469 470 4.820897 TCAGATGCATCTTCGTAAACAGT 58.179 39.130 26.70 0.00 34.22 3.55
470 471 5.961272 TCAGATGCATCTTCGTAAACAGTA 58.039 37.500 26.70 0.68 34.22 2.74
471 472 6.394809 TCAGATGCATCTTCGTAAACAGTAA 58.605 36.000 26.70 0.00 34.22 2.24
472 473 6.871492 TCAGATGCATCTTCGTAAACAGTAAA 59.129 34.615 26.70 0.00 34.22 2.01
473 474 7.386573 TCAGATGCATCTTCGTAAACAGTAAAA 59.613 33.333 26.70 0.00 34.22 1.52
474 475 8.015087 CAGATGCATCTTCGTAAACAGTAAAAA 58.985 33.333 26.70 0.00 34.22 1.94
499 500 7.763172 AAAACAATAGTTTCAAATGCGAACA 57.237 28.000 0.00 0.00 46.79 3.18
500 501 6.747659 AACAATAGTTTCAAATGCGAACAC 57.252 33.333 0.00 0.00 33.11 3.32
501 502 5.826586 ACAATAGTTTCAAATGCGAACACA 58.173 33.333 0.00 0.00 0.00 3.72
502 503 5.914635 ACAATAGTTTCAAATGCGAACACAG 59.085 36.000 0.00 0.00 0.00 3.66
503 504 2.731217 AGTTTCAAATGCGAACACAGC 58.269 42.857 0.00 0.00 0.00 4.40
504 505 2.358898 AGTTTCAAATGCGAACACAGCT 59.641 40.909 0.00 0.00 35.28 4.24
505 506 2.686558 TTCAAATGCGAACACAGCTC 57.313 45.000 0.00 0.00 35.28 4.09
506 507 1.592064 TCAAATGCGAACACAGCTCA 58.408 45.000 0.00 0.00 35.28 4.26
507 508 1.264020 TCAAATGCGAACACAGCTCAC 59.736 47.619 0.00 0.00 35.28 3.51
508 509 0.593128 AAATGCGAACACAGCTCACC 59.407 50.000 0.00 0.00 35.28 4.02
509 510 1.568612 AATGCGAACACAGCTCACCG 61.569 55.000 0.00 0.00 35.28 4.94
510 511 2.661866 GCGAACACAGCTCACCGT 60.662 61.111 0.00 0.00 0.00 4.83
511 512 2.943345 GCGAACACAGCTCACCGTG 61.943 63.158 0.61 0.61 39.10 4.94
512 513 2.310233 CGAACACAGCTCACCGTGG 61.310 63.158 6.83 0.00 37.45 4.94
513 514 1.961277 GAACACAGCTCACCGTGGG 60.961 63.158 6.83 0.00 37.45 4.61
514 515 4.626081 ACACAGCTCACCGTGGGC 62.626 66.667 16.06 16.06 46.33 5.36
519 520 2.270850 GCTCACCGTGGGCCATAA 59.729 61.111 12.76 0.00 38.08 1.90
520 521 2.112815 GCTCACCGTGGGCCATAAC 61.113 63.158 12.76 0.00 38.08 1.89
521 522 1.602237 CTCACCGTGGGCCATAACT 59.398 57.895 10.70 0.00 0.00 2.24
522 523 0.462047 CTCACCGTGGGCCATAACTC 60.462 60.000 10.70 0.00 0.00 3.01
523 524 0.907704 TCACCGTGGGCCATAACTCT 60.908 55.000 10.70 0.00 0.00 3.24
548 549 1.339929 GCCCATTTTGGTTGAGTTCGT 59.660 47.619 0.00 0.00 35.17 3.85
549 550 2.862140 GCCCATTTTGGTTGAGTTCGTG 60.862 50.000 0.00 0.00 35.17 4.35
550 551 2.621055 CCCATTTTGGTTGAGTTCGTGA 59.379 45.455 0.00 0.00 35.17 4.35
551 552 3.550030 CCCATTTTGGTTGAGTTCGTGAC 60.550 47.826 0.00 0.00 35.17 3.67
552 553 3.550030 CCATTTTGGTTGAGTTCGTGACC 60.550 47.826 0.00 0.00 31.35 4.02
553 554 1.670791 TTTGGTTGAGTTCGTGACCC 58.329 50.000 0.00 0.00 0.00 4.46
554 555 0.834612 TTGGTTGAGTTCGTGACCCT 59.165 50.000 0.00 0.00 0.00 4.34
555 556 0.834612 TGGTTGAGTTCGTGACCCTT 59.165 50.000 0.00 0.00 0.00 3.95
556 557 1.202604 TGGTTGAGTTCGTGACCCTTC 60.203 52.381 0.00 0.00 0.00 3.46
557 558 1.070289 GGTTGAGTTCGTGACCCTTCT 59.930 52.381 0.00 0.00 0.00 2.85
558 559 2.405172 GTTGAGTTCGTGACCCTTCTC 58.595 52.381 0.00 0.00 0.00 2.87
559 560 1.699730 TGAGTTCGTGACCCTTCTCA 58.300 50.000 0.00 0.00 0.00 3.27
560 561 1.613925 TGAGTTCGTGACCCTTCTCAG 59.386 52.381 0.00 0.00 0.00 3.35
561 562 1.614413 GAGTTCGTGACCCTTCTCAGT 59.386 52.381 0.00 0.00 0.00 3.41
564 565 0.178973 TCGTGACCCTTCTCAGTCCA 60.179 55.000 0.00 0.00 31.76 4.02
565 566 0.244994 CGTGACCCTTCTCAGTCCAG 59.755 60.000 0.00 0.00 31.76 3.86
568 569 0.528470 GACCCTTCTCAGTCCAGTCG 59.472 60.000 0.00 0.00 0.00 4.18
569 570 0.112606 ACCCTTCTCAGTCCAGTCGA 59.887 55.000 0.00 0.00 0.00 4.20
579 581 0.038159 GTCCAGTCGAGTCCCAACTG 60.038 60.000 7.63 7.63 40.05 3.16
710 716 4.037858 TCGGTAAGATTAACTCCTTCGC 57.962 45.455 0.00 0.00 0.00 4.70
711 717 2.787680 CGGTAAGATTAACTCCTTCGCG 59.212 50.000 0.00 0.00 0.00 5.87
741 757 0.463833 GGCAACCCTACCTGAATCCG 60.464 60.000 0.00 0.00 0.00 4.18
799 815 1.497991 TCTATTTACCGCAGCGATGC 58.502 50.000 18.75 17.29 0.00 3.91
808 824 1.720301 GCAGCGATGCTTTCCTCAG 59.280 57.895 20.22 0.00 36.40 3.35
1076 1092 0.170561 AACGTCGTGAGGAGGATTCG 59.829 55.000 0.00 0.00 34.64 3.34
1109 1125 4.657814 ATGAGGTTGTTAGGGTGAACAT 57.342 40.909 0.00 0.00 39.04 2.71
1173 1210 1.648174 CATCTGTGTTGTGCGCACA 59.352 52.632 37.86 37.86 43.60 4.57
1196 1233 3.067833 GGCTAGACCTTGTCTGTTTCAC 58.932 50.000 7.00 0.00 43.30 3.18
1323 1366 5.474876 GGTGAAGCCAATGAAGGAATATAGG 59.525 44.000 0.00 0.00 37.17 2.57
1374 1417 2.109304 GGTCTCCTCTAGCAGGGAGTAT 59.891 54.545 18.79 0.00 46.56 2.12
1677 7043 2.287849 GCTGGAGAGGTTTTTGCAAGAC 60.288 50.000 0.00 2.77 0.00 3.01
1751 7117 1.515521 AACGGCTGCTTAGTTGTGGC 61.516 55.000 0.00 0.00 0.00 5.01
2098 7485 6.873997 TGAGGTGAATAATTCATCGTACTGT 58.126 36.000 0.00 0.00 45.43 3.55
2449 7885 5.353400 GCTAGGTAAACAGTAACATGTTCCC 59.647 44.000 15.85 7.21 42.49 3.97
2480 8296 8.149647 AGTGATCTTCAGATAAGGATTTGCTAG 58.850 37.037 0.00 0.00 34.37 3.42
2511 8349 4.882427 CCAACTCTGAAGATCAATGCTCAT 59.118 41.667 0.00 0.00 0.00 2.90
2540 8378 6.812998 AGTGTGCTTACTGTACTCTGTTTTA 58.187 36.000 0.00 0.00 34.68 1.52
2542 8380 5.987347 TGTGCTTACTGTACTCTGTTTTACC 59.013 40.000 0.00 0.00 32.31 2.85
2547 8385 8.618677 GCTTACTGTACTCTGTTTTACCTTTTT 58.381 33.333 0.00 0.00 0.00 1.94
2587 8441 6.096001 AGTTGGATACTTGGATTTTGCTGATC 59.904 38.462 0.00 0.00 31.29 2.92
2637 8491 7.012989 AGTGTGTTTGGTCTTCCAGTTTTATAC 59.987 37.037 0.00 0.00 45.22 1.47
2638 8492 7.012989 GTGTGTTTGGTCTTCCAGTTTTATACT 59.987 37.037 0.00 0.00 45.22 2.12
2639 8493 7.227910 TGTGTTTGGTCTTCCAGTTTTATACTC 59.772 37.037 0.00 0.00 45.22 2.59
2640 8494 6.713450 TGTTTGGTCTTCCAGTTTTATACTCC 59.287 38.462 0.00 0.00 45.22 3.85
2641 8495 5.431179 TGGTCTTCCAGTTTTATACTCCC 57.569 43.478 0.00 0.00 39.03 4.30
2642 8496 5.098663 TGGTCTTCCAGTTTTATACTCCCT 58.901 41.667 0.00 0.00 39.03 4.20
2643 8497 5.189145 TGGTCTTCCAGTTTTATACTCCCTC 59.811 44.000 0.00 0.00 39.03 4.30
2644 8498 5.396548 GGTCTTCCAGTTTTATACTCCCTCC 60.397 48.000 0.00 0.00 33.85 4.30
2645 8499 4.404715 TCTTCCAGTTTTATACTCCCTCCG 59.595 45.833 0.00 0.00 33.85 4.63
2646 8500 3.716431 TCCAGTTTTATACTCCCTCCGT 58.284 45.455 0.00 0.00 33.85 4.69
2647 8501 4.098894 TCCAGTTTTATACTCCCTCCGTT 58.901 43.478 0.00 0.00 33.85 4.44
2648 8502 4.161001 TCCAGTTTTATACTCCCTCCGTTC 59.839 45.833 0.00 0.00 33.85 3.95
2649 8503 4.110482 CAGTTTTATACTCCCTCCGTTCG 58.890 47.826 0.00 0.00 33.85 3.95
2650 8504 3.131755 AGTTTTATACTCCCTCCGTTCGG 59.868 47.826 4.74 4.74 28.23 4.30
2651 8505 2.734755 TTATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
2652 8506 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
2653 8507 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2654 8508 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2655 8509 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2656 8510 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2657 8511 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2658 8512 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2659 8513 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2660 8514 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2661 8515 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2662 8516 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2663 8517 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2664 8518 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2665 8519 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2666 8520 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2667 8521 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
2668 8522 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
2669 8523 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
2670 8524 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
2671 8525 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2672 8526 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
2673 8527 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
2674 8528 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
2675 8529 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
2676 8530 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
2677 8531 4.759782 ACTTGTCTCGGAAATGGATGTAG 58.240 43.478 0.00 0.00 0.00 2.74
2678 8532 4.466370 ACTTGTCTCGGAAATGGATGTAGA 59.534 41.667 0.00 0.00 0.00 2.59
2679 8533 5.129485 ACTTGTCTCGGAAATGGATGTAGAT 59.871 40.000 0.00 0.00 0.00 1.98
2680 8534 6.323996 ACTTGTCTCGGAAATGGATGTAGATA 59.676 38.462 0.00 0.00 0.00 1.98
2681 8535 6.085555 TGTCTCGGAAATGGATGTAGATAC 57.914 41.667 0.00 0.00 0.00 2.24
2682 8536 5.596772 TGTCTCGGAAATGGATGTAGATACA 59.403 40.000 0.00 0.00 40.98 2.29
2694 8548 5.845985 ATGTAGATACATCCATTTTCGCG 57.154 39.130 0.00 0.00 42.96 5.87
2695 8549 4.939271 TGTAGATACATCCATTTTCGCGA 58.061 39.130 3.71 3.71 0.00 5.87
2696 8550 4.743151 TGTAGATACATCCATTTTCGCGAC 59.257 41.667 9.15 0.00 0.00 5.19
2697 8551 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
2698 8552 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
2699 8553 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
2700 8554 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
2701 8555 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
2702 8556 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
2703 8557 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
2704 8558 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
2705 8559 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
2706 8560 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
2707 8561 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
2708 8562 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
2709 8563 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
2710 8564 2.883574 TCGCGACAAGTAATTCCGAAT 58.116 42.857 3.71 0.00 0.00 3.34
2711 8565 2.601314 TCGCGACAAGTAATTCCGAATG 59.399 45.455 3.71 0.00 0.00 2.67
2712 8566 2.285602 CGCGACAAGTAATTCCGAATGG 60.286 50.000 0.00 0.00 0.00 3.16
2713 8567 2.933906 GCGACAAGTAATTCCGAATGGA 59.066 45.455 0.00 0.00 44.61 3.41
2763 8617 4.947388 GTGGATGCCTTTTAGAACATGGTA 59.053 41.667 0.00 0.00 0.00 3.25
2765 8619 5.593909 TGGATGCCTTTTAGAACATGGTATG 59.406 40.000 0.00 0.00 0.00 2.39
2767 8621 6.238759 GGATGCCTTTTAGAACATGGTATGTC 60.239 42.308 0.00 0.00 44.07 3.06
2783 8642 7.252612 TGGTATGTCTTTTCTGGATGAACTA 57.747 36.000 0.00 0.00 33.88 2.24
2823 8683 5.738118 AACGAAGAAACGTGGTAAATTCA 57.262 34.783 0.00 0.00 45.83 2.57
2876 8736 6.461110 AGTAAGTAGTAACCATGCACGTAT 57.539 37.500 0.00 0.00 0.00 3.06
2894 8755 5.580691 CACGTATAAGGCTTCTCACATGAAA 59.419 40.000 1.30 0.00 0.00 2.69
2898 8759 7.641411 CGTATAAGGCTTCTCACATGAAATTTG 59.359 37.037 1.30 0.00 0.00 2.32
3004 8914 9.239002 CGAGGTAGTATAATTCTTTCAGTGAAG 57.761 37.037 5.56 1.19 0.00 3.02
3023 8933 9.185192 CAGTGAAGAAATAAAATTGTTGACTCC 57.815 33.333 0.00 0.00 29.87 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.753877 GAAACGGCGGCGGCTTTC 62.754 66.667 35.05 28.92 39.81 2.62
11 12 1.630244 CTGCTCAGAAGGCGAAACGG 61.630 60.000 0.00 0.00 0.00 4.44
12 13 0.667487 TCTGCTCAGAAGGCGAAACG 60.667 55.000 0.00 0.00 33.91 3.60
13 14 1.195674 GTTCTGCTCAGAAGGCGAAAC 59.804 52.381 12.17 0.00 46.93 2.78
14 15 1.202639 TGTTCTGCTCAGAAGGCGAAA 60.203 47.619 12.17 0.00 46.93 3.46
15 16 0.392706 TGTTCTGCTCAGAAGGCGAA 59.607 50.000 12.17 0.00 46.93 4.70
16 17 0.319900 GTGTTCTGCTCAGAAGGCGA 60.320 55.000 12.17 0.00 46.93 5.54
17 18 0.601046 TGTGTTCTGCTCAGAAGGCG 60.601 55.000 12.17 0.00 46.93 5.52
18 19 1.597742 TTGTGTTCTGCTCAGAAGGC 58.402 50.000 12.17 8.86 46.93 4.35
19 20 2.291741 GGTTTGTGTTCTGCTCAGAAGG 59.708 50.000 12.17 0.00 46.93 3.46
20 21 2.291741 GGGTTTGTGTTCTGCTCAGAAG 59.708 50.000 12.17 0.00 46.93 2.85
21 22 2.092429 AGGGTTTGTGTTCTGCTCAGAA 60.092 45.455 8.14 8.14 44.47 3.02
22 23 1.490490 AGGGTTTGTGTTCTGCTCAGA 59.510 47.619 0.00 0.00 35.27 3.27
23 24 1.972872 AGGGTTTGTGTTCTGCTCAG 58.027 50.000 0.00 0.00 0.00 3.35
24 25 3.211045 GTTAGGGTTTGTGTTCTGCTCA 58.789 45.455 0.00 0.00 0.00 4.26
25 26 2.223377 CGTTAGGGTTTGTGTTCTGCTC 59.777 50.000 0.00 0.00 0.00 4.26
26 27 2.158871 TCGTTAGGGTTTGTGTTCTGCT 60.159 45.455 0.00 0.00 0.00 4.24
27 28 2.215196 TCGTTAGGGTTTGTGTTCTGC 58.785 47.619 0.00 0.00 0.00 4.26
28 29 4.334481 AGTTTCGTTAGGGTTTGTGTTCTG 59.666 41.667 0.00 0.00 0.00 3.02
29 30 4.334481 CAGTTTCGTTAGGGTTTGTGTTCT 59.666 41.667 0.00 0.00 0.00 3.01
30 31 4.333372 TCAGTTTCGTTAGGGTTTGTGTTC 59.667 41.667 0.00 0.00 0.00 3.18
31 32 4.263435 TCAGTTTCGTTAGGGTTTGTGTT 58.737 39.130 0.00 0.00 0.00 3.32
32 33 3.876341 TCAGTTTCGTTAGGGTTTGTGT 58.124 40.909 0.00 0.00 0.00 3.72
33 34 4.886247 TTCAGTTTCGTTAGGGTTTGTG 57.114 40.909 0.00 0.00 0.00 3.33
34 35 4.337274 CCTTTCAGTTTCGTTAGGGTTTGT 59.663 41.667 0.00 0.00 0.00 2.83
35 36 4.577283 TCCTTTCAGTTTCGTTAGGGTTTG 59.423 41.667 0.00 0.00 0.00 2.93
36 37 4.784177 TCCTTTCAGTTTCGTTAGGGTTT 58.216 39.130 0.00 0.00 0.00 3.27
37 38 4.386711 CTCCTTTCAGTTTCGTTAGGGTT 58.613 43.478 0.00 0.00 0.00 4.11
38 39 3.806157 GCTCCTTTCAGTTTCGTTAGGGT 60.806 47.826 0.00 0.00 0.00 4.34
39 40 2.742589 GCTCCTTTCAGTTTCGTTAGGG 59.257 50.000 0.00 0.00 0.00 3.53
40 41 2.412089 CGCTCCTTTCAGTTTCGTTAGG 59.588 50.000 0.00 0.00 0.00 2.69
41 42 3.121445 GTCGCTCCTTTCAGTTTCGTTAG 59.879 47.826 0.00 0.00 0.00 2.34
42 43 3.054878 GTCGCTCCTTTCAGTTTCGTTA 58.945 45.455 0.00 0.00 0.00 3.18
43 44 1.865340 GTCGCTCCTTTCAGTTTCGTT 59.135 47.619 0.00 0.00 0.00 3.85
44 45 1.068741 AGTCGCTCCTTTCAGTTTCGT 59.931 47.619 0.00 0.00 0.00 3.85
45 46 1.784525 AGTCGCTCCTTTCAGTTTCG 58.215 50.000 0.00 0.00 0.00 3.46
46 47 5.668558 TTTTAGTCGCTCCTTTCAGTTTC 57.331 39.130 0.00 0.00 0.00 2.78
47 48 6.262273 TCATTTTTAGTCGCTCCTTTCAGTTT 59.738 34.615 0.00 0.00 0.00 2.66
48 49 5.763204 TCATTTTTAGTCGCTCCTTTCAGTT 59.237 36.000 0.00 0.00 0.00 3.16
49 50 5.305585 TCATTTTTAGTCGCTCCTTTCAGT 58.694 37.500 0.00 0.00 0.00 3.41
50 51 5.862924 TCATTTTTAGTCGCTCCTTTCAG 57.137 39.130 0.00 0.00 0.00 3.02
51 52 5.334879 GCTTCATTTTTAGTCGCTCCTTTCA 60.335 40.000 0.00 0.00 0.00 2.69
52 53 5.089411 GCTTCATTTTTAGTCGCTCCTTTC 58.911 41.667 0.00 0.00 0.00 2.62
53 54 4.082733 GGCTTCATTTTTAGTCGCTCCTTT 60.083 41.667 0.00 0.00 0.00 3.11
54 55 3.440522 GGCTTCATTTTTAGTCGCTCCTT 59.559 43.478 0.00 0.00 0.00 3.36
55 56 3.010420 GGCTTCATTTTTAGTCGCTCCT 58.990 45.455 0.00 0.00 0.00 3.69
56 57 2.097629 GGGCTTCATTTTTAGTCGCTCC 59.902 50.000 0.00 0.00 0.00 4.70
57 58 2.097629 GGGGCTTCATTTTTAGTCGCTC 59.902 50.000 0.00 0.00 0.00 5.03
58 59 2.092323 GGGGCTTCATTTTTAGTCGCT 58.908 47.619 0.00 0.00 0.00 4.93
59 60 1.134367 GGGGGCTTCATTTTTAGTCGC 59.866 52.381 0.00 0.00 0.00 5.19
86 87 2.276740 GGTGGATCCTGCCAAGGG 59.723 66.667 14.23 0.00 44.62 3.95
87 88 2.124570 CGGTGGATCCTGCCAAGG 60.125 66.667 20.68 6.03 46.06 3.61
88 89 2.825836 GCGGTGGATCCTGCCAAG 60.826 66.667 20.68 10.14 40.20 3.61
89 90 4.776322 CGCGGTGGATCCTGCCAA 62.776 66.667 20.68 0.00 40.20 4.52
93 94 4.899239 GAGGCGCGGTGGATCCTG 62.899 72.222 14.23 4.04 0.00 3.86
96 97 4.241555 ATGGAGGCGCGGTGGATC 62.242 66.667 8.83 0.00 0.00 3.36
97 98 4.552365 CATGGAGGCGCGGTGGAT 62.552 66.667 8.83 0.00 0.00 3.41
116 117 2.066999 GTCTCCAGTGGCCCTAGGG 61.067 68.421 24.89 24.89 38.57 3.53
117 118 2.427245 CGTCTCCAGTGGCCCTAGG 61.427 68.421 3.51 0.06 0.00 3.02
118 119 1.379977 TCGTCTCCAGTGGCCCTAG 60.380 63.158 3.51 0.00 0.00 3.02
119 120 1.379977 CTCGTCTCCAGTGGCCCTA 60.380 63.158 3.51 0.00 0.00 3.53
120 121 2.681778 CTCGTCTCCAGTGGCCCT 60.682 66.667 3.51 0.00 0.00 5.19
121 122 3.775654 CCTCGTCTCCAGTGGCCC 61.776 72.222 3.51 0.00 0.00 5.80
122 123 4.459089 GCCTCGTCTCCAGTGGCC 62.459 72.222 3.51 0.00 41.05 5.36
123 124 4.803426 CGCCTCGTCTCCAGTGGC 62.803 72.222 3.51 0.00 42.82 5.01
124 125 4.135153 CCGCCTCGTCTCCAGTGG 62.135 72.222 1.40 1.40 0.00 4.00
125 126 3.062466 TCCGCCTCGTCTCCAGTG 61.062 66.667 0.00 0.00 0.00 3.66
126 127 3.063084 GTCCGCCTCGTCTCCAGT 61.063 66.667 0.00 0.00 0.00 4.00
127 128 3.827898 GGTCCGCCTCGTCTCCAG 61.828 72.222 0.00 0.00 0.00 3.86
128 129 4.361971 AGGTCCGCCTCGTCTCCA 62.362 66.667 0.00 0.00 42.67 3.86
129 130 3.827898 CAGGTCCGCCTCGTCTCC 61.828 72.222 0.00 0.00 44.97 3.71
130 131 4.500116 GCAGGTCCGCCTCGTCTC 62.500 72.222 0.00 0.00 44.97 3.36
148 149 3.760035 TCTCTTGCCGGCTCCGAC 61.760 66.667 29.70 0.00 42.83 4.79
149 150 3.760035 GTCTCTTGCCGGCTCCGA 61.760 66.667 29.70 19.05 42.83 4.55
150 151 3.997064 CTGTCTCTTGCCGGCTCCG 62.997 68.421 29.70 15.67 39.44 4.63
151 152 2.125350 CTGTCTCTTGCCGGCTCC 60.125 66.667 29.70 9.18 0.00 4.70
152 153 0.320771 TTTCTGTCTCTTGCCGGCTC 60.321 55.000 29.70 11.18 0.00 4.70
153 154 0.603975 GTTTCTGTCTCTTGCCGGCT 60.604 55.000 29.70 0.00 0.00 5.52
154 155 1.578206 GGTTTCTGTCTCTTGCCGGC 61.578 60.000 22.73 22.73 0.00 6.13
155 156 0.955919 GGGTTTCTGTCTCTTGCCGG 60.956 60.000 0.00 0.00 0.00 6.13
156 157 0.035458 AGGGTTTCTGTCTCTTGCCG 59.965 55.000 0.00 0.00 0.00 5.69
157 158 2.937433 GCTAGGGTTTCTGTCTCTTGCC 60.937 54.545 0.00 0.00 0.00 4.52
158 159 2.027653 AGCTAGGGTTTCTGTCTCTTGC 60.028 50.000 0.00 0.00 0.00 4.01
159 160 3.259374 TCAGCTAGGGTTTCTGTCTCTTG 59.741 47.826 0.00 0.00 0.00 3.02
160 161 3.511477 TCAGCTAGGGTTTCTGTCTCTT 58.489 45.455 0.00 0.00 0.00 2.85
161 162 3.176924 TCAGCTAGGGTTTCTGTCTCT 57.823 47.619 0.00 0.00 0.00 3.10
162 163 4.479786 AATCAGCTAGGGTTTCTGTCTC 57.520 45.455 0.00 0.00 0.00 3.36
163 164 4.917906 AAATCAGCTAGGGTTTCTGTCT 57.082 40.909 0.00 0.00 0.00 3.41
164 165 5.966742 AAAAATCAGCTAGGGTTTCTGTC 57.033 39.130 0.00 0.00 0.00 3.51
185 186 2.290960 GGCCTCTTCCTCCTGCTAAAAA 60.291 50.000 0.00 0.00 0.00 1.94
186 187 1.282157 GGCCTCTTCCTCCTGCTAAAA 59.718 52.381 0.00 0.00 0.00 1.52
187 188 0.912486 GGCCTCTTCCTCCTGCTAAA 59.088 55.000 0.00 0.00 0.00 1.85
188 189 0.983378 GGGCCTCTTCCTCCTGCTAA 60.983 60.000 0.84 0.00 0.00 3.09
189 190 1.383248 GGGCCTCTTCCTCCTGCTA 60.383 63.158 0.84 0.00 0.00 3.49
190 191 2.690510 GGGCCTCTTCCTCCTGCT 60.691 66.667 0.84 0.00 0.00 4.24
191 192 3.803162 GGGGCCTCTTCCTCCTGC 61.803 72.222 0.84 0.00 0.00 4.85
192 193 2.041928 AGGGGCCTCTTCCTCCTG 59.958 66.667 0.00 0.00 0.00 3.86
193 194 2.370633 GAGGGGCCTCTTCCTCCT 59.629 66.667 6.58 0.00 42.72 3.69
194 195 3.157949 CGAGGGGCCTCTTCCTCC 61.158 72.222 6.58 0.00 44.99 4.30
195 196 2.042843 TCGAGGGGCCTCTTCCTC 60.043 66.667 6.58 11.50 44.50 3.71
196 197 2.042435 CTCGAGGGGCCTCTTCCT 60.042 66.667 6.58 0.90 40.69 3.36
197 198 3.855853 GCTCGAGGGGCCTCTTCC 61.856 72.222 6.58 0.00 40.69 3.46
198 199 4.214327 CGCTCGAGGGGCCTCTTC 62.214 72.222 21.06 0.00 40.69 2.87
200 201 2.930777 ATAACGCTCGAGGGGCCTCT 62.931 60.000 30.16 3.57 40.69 3.69
201 202 2.029307 AATAACGCTCGAGGGGCCTC 62.029 60.000 30.16 0.00 39.55 4.70
202 203 2.029307 GAATAACGCTCGAGGGGCCT 62.029 60.000 30.16 17.66 0.00 5.19
203 204 1.594564 GAATAACGCTCGAGGGGCC 60.595 63.158 30.16 12.35 0.00 5.80
204 205 1.143183 TGAATAACGCTCGAGGGGC 59.857 57.895 30.16 15.43 0.00 5.80
205 206 0.529992 GGTGAATAACGCTCGAGGGG 60.530 60.000 30.16 14.44 0.00 4.79
206 207 0.174845 TGGTGAATAACGCTCGAGGG 59.825 55.000 26.24 26.24 0.00 4.30
207 208 1.860950 CATGGTGAATAACGCTCGAGG 59.139 52.381 15.58 6.97 0.00 4.63
208 209 2.809446 TCATGGTGAATAACGCTCGAG 58.191 47.619 8.45 8.45 0.00 4.04
209 210 2.951457 TCATGGTGAATAACGCTCGA 57.049 45.000 0.00 0.00 0.00 4.04
210 211 4.335082 TTTTCATGGTGAATAACGCTCG 57.665 40.909 0.00 0.00 36.11 5.03
211 212 6.454186 GCAAATTTTCATGGTGAATAACGCTC 60.454 38.462 0.00 0.00 36.11 5.03
212 213 5.348451 GCAAATTTTCATGGTGAATAACGCT 59.652 36.000 0.00 0.00 36.11 5.07
213 214 5.119898 TGCAAATTTTCATGGTGAATAACGC 59.880 36.000 0.00 0.00 36.11 4.84
214 215 6.400940 GGTGCAAATTTTCATGGTGAATAACG 60.401 38.462 0.00 0.00 36.11 3.18
215 216 6.128309 GGGTGCAAATTTTCATGGTGAATAAC 60.128 38.462 0.00 0.00 36.11 1.89
216 217 5.936956 GGGTGCAAATTTTCATGGTGAATAA 59.063 36.000 0.00 0.00 36.11 1.40
217 218 5.248020 AGGGTGCAAATTTTCATGGTGAATA 59.752 36.000 0.00 0.00 36.11 1.75
218 219 4.041938 AGGGTGCAAATTTTCATGGTGAAT 59.958 37.500 0.00 0.00 36.11 2.57
219 220 3.390639 AGGGTGCAAATTTTCATGGTGAA 59.609 39.130 0.00 0.00 34.03 3.18
220 221 2.971330 AGGGTGCAAATTTTCATGGTGA 59.029 40.909 0.00 0.00 0.00 4.02
221 222 3.328505 GAGGGTGCAAATTTTCATGGTG 58.671 45.455 0.00 0.00 0.00 4.17
222 223 2.302733 GGAGGGTGCAAATTTTCATGGT 59.697 45.455 0.00 0.00 0.00 3.55
223 224 2.568509 AGGAGGGTGCAAATTTTCATGG 59.431 45.455 0.00 0.00 0.00 3.66
224 225 3.967332 AGGAGGGTGCAAATTTTCATG 57.033 42.857 0.00 0.00 0.00 3.07
225 226 3.448660 GCTAGGAGGGTGCAAATTTTCAT 59.551 43.478 0.00 0.00 0.00 2.57
226 227 2.825532 GCTAGGAGGGTGCAAATTTTCA 59.174 45.455 0.00 0.00 0.00 2.69
227 228 2.825532 TGCTAGGAGGGTGCAAATTTTC 59.174 45.455 0.00 0.00 33.48 2.29
228 229 2.562738 GTGCTAGGAGGGTGCAAATTTT 59.437 45.455 0.00 0.00 38.50 1.82
229 230 2.171003 GTGCTAGGAGGGTGCAAATTT 58.829 47.619 0.00 0.00 38.50 1.82
230 231 1.075374 TGTGCTAGGAGGGTGCAAATT 59.925 47.619 0.00 0.00 38.50 1.82
231 232 0.698238 TGTGCTAGGAGGGTGCAAAT 59.302 50.000 0.00 0.00 38.50 2.32
232 233 0.250727 GTGTGCTAGGAGGGTGCAAA 60.251 55.000 0.00 0.00 38.50 3.68
233 234 1.127567 AGTGTGCTAGGAGGGTGCAA 61.128 55.000 0.00 0.00 38.50 4.08
234 235 1.536418 AGTGTGCTAGGAGGGTGCA 60.536 57.895 0.00 0.00 0.00 4.57
235 236 1.219393 GAGTGTGCTAGGAGGGTGC 59.781 63.158 0.00 0.00 0.00 5.01
236 237 0.976641 TTGAGTGTGCTAGGAGGGTG 59.023 55.000 0.00 0.00 0.00 4.61
237 238 1.270907 CTTGAGTGTGCTAGGAGGGT 58.729 55.000 0.00 0.00 0.00 4.34
238 239 0.107945 GCTTGAGTGTGCTAGGAGGG 60.108 60.000 0.00 0.00 0.00 4.30
239 240 0.610174 TGCTTGAGTGTGCTAGGAGG 59.390 55.000 0.00 0.00 0.00 4.30
240 241 2.168106 AGATGCTTGAGTGTGCTAGGAG 59.832 50.000 0.00 0.00 0.00 3.69
241 242 2.182827 AGATGCTTGAGTGTGCTAGGA 58.817 47.619 0.00 0.00 0.00 2.94
242 243 2.687700 AGATGCTTGAGTGTGCTAGG 57.312 50.000 0.00 0.00 0.00 3.02
243 244 3.750130 ACAAAGATGCTTGAGTGTGCTAG 59.250 43.478 0.00 0.00 0.00 3.42
244 245 3.743521 ACAAAGATGCTTGAGTGTGCTA 58.256 40.909 0.00 0.00 0.00 3.49
245 246 2.579873 ACAAAGATGCTTGAGTGTGCT 58.420 42.857 0.00 0.00 0.00 4.40
246 247 3.047796 CAACAAAGATGCTTGAGTGTGC 58.952 45.455 0.00 0.00 0.00 4.57
247 248 4.201940 TGTCAACAAAGATGCTTGAGTGTG 60.202 41.667 0.00 0.00 31.69 3.82
248 249 3.947196 TGTCAACAAAGATGCTTGAGTGT 59.053 39.130 0.00 0.00 31.69 3.55
249 250 4.036027 ACTGTCAACAAAGATGCTTGAGTG 59.964 41.667 0.00 0.00 31.69 3.51
250 251 4.202441 ACTGTCAACAAAGATGCTTGAGT 58.798 39.130 0.00 0.00 31.69 3.41
251 252 4.825546 ACTGTCAACAAAGATGCTTGAG 57.174 40.909 0.00 0.00 31.69 3.02
252 253 5.581126 AAACTGTCAACAAAGATGCTTGA 57.419 34.783 0.00 0.00 0.00 3.02
253 254 6.651755 AAAAACTGTCAACAAAGATGCTTG 57.348 33.333 0.00 0.00 0.00 4.01
274 275 6.817765 ATTCGACAGAAATAGCAGGAAAAA 57.182 33.333 0.00 0.00 40.15 1.94
275 276 6.817765 AATTCGACAGAAATAGCAGGAAAA 57.182 33.333 0.00 0.00 40.15 2.29
276 277 6.817765 AAATTCGACAGAAATAGCAGGAAA 57.182 33.333 0.00 0.00 40.15 3.13
277 278 7.915293 TTAAATTCGACAGAAATAGCAGGAA 57.085 32.000 0.00 0.00 40.15 3.36
278 279 9.778741 ATATTAAATTCGACAGAAATAGCAGGA 57.221 29.630 0.00 0.00 40.15 3.86
303 304 9.471702 CCCAGGCTCATCTAATATTTAATGAAT 57.528 33.333 11.43 2.31 0.00 2.57
304 305 7.394359 GCCCAGGCTCATCTAATATTTAATGAA 59.606 37.037 0.08 0.98 38.26 2.57
305 306 6.886459 GCCCAGGCTCATCTAATATTTAATGA 59.114 38.462 0.08 10.38 38.26 2.57
306 307 7.093322 GCCCAGGCTCATCTAATATTTAATG 57.907 40.000 0.08 0.00 38.26 1.90
323 324 2.543067 ATCCAAAGACGAGCCCAGGC 62.543 60.000 0.00 0.00 42.33 4.85
324 325 0.035056 AATCCAAAGACGAGCCCAGG 60.035 55.000 0.00 0.00 0.00 4.45
325 326 2.691409 TAATCCAAAGACGAGCCCAG 57.309 50.000 0.00 0.00 0.00 4.45
326 327 2.483013 CGATAATCCAAAGACGAGCCCA 60.483 50.000 0.00 0.00 0.00 5.36
327 328 2.135933 CGATAATCCAAAGACGAGCCC 58.864 52.381 0.00 0.00 0.00 5.19
328 329 3.093717 TCGATAATCCAAAGACGAGCC 57.906 47.619 0.00 0.00 0.00 4.70
329 330 6.366332 ACAATATCGATAATCCAAAGACGAGC 59.634 38.462 9.61 0.00 33.58 5.03
330 331 7.875316 ACAATATCGATAATCCAAAGACGAG 57.125 36.000 9.61 0.00 33.58 4.18
331 332 7.869016 GACAATATCGATAATCCAAAGACGA 57.131 36.000 9.61 0.00 0.00 4.20
347 348 4.811555 TTGCATTGCCTACGACAATATC 57.188 40.909 6.12 0.00 36.00 1.63
348 349 4.821260 TCATTGCATTGCCTACGACAATAT 59.179 37.500 6.12 0.00 36.00 1.28
349 350 4.195416 TCATTGCATTGCCTACGACAATA 58.805 39.130 6.12 0.00 36.00 1.90
350 351 3.016031 TCATTGCATTGCCTACGACAAT 58.984 40.909 6.12 0.00 38.25 2.71
351 352 2.431454 TCATTGCATTGCCTACGACAA 58.569 42.857 6.12 0.00 0.00 3.18
352 353 2.106477 TCATTGCATTGCCTACGACA 57.894 45.000 6.12 0.00 0.00 4.35
353 354 4.452114 TGATATCATTGCATTGCCTACGAC 59.548 41.667 6.12 0.00 0.00 4.34
354 355 4.640364 TGATATCATTGCATTGCCTACGA 58.360 39.130 6.12 0.00 0.00 3.43
355 356 5.122711 TGATGATATCATTGCATTGCCTACG 59.877 40.000 19.11 0.00 36.57 3.51
356 357 6.505044 TGATGATATCATTGCATTGCCTAC 57.495 37.500 19.11 3.10 36.57 3.18
357 358 6.943718 TCTTGATGATATCATTGCATTGCCTA 59.056 34.615 19.11 1.08 39.39 3.93
358 359 5.773176 TCTTGATGATATCATTGCATTGCCT 59.227 36.000 19.11 0.00 39.39 4.75
359 360 6.020971 TCTTGATGATATCATTGCATTGCC 57.979 37.500 19.11 4.93 39.39 4.52
360 361 7.539436 AGATCTTGATGATATCATTGCATTGC 58.461 34.615 19.11 0.46 39.39 3.56
362 363 9.961264 ACTAGATCTTGATGATATCATTGCATT 57.039 29.630 19.11 5.54 39.39 3.56
363 364 9.961264 AACTAGATCTTGATGATATCATTGCAT 57.039 29.630 19.11 9.29 39.39 3.96
364 365 9.433153 GAACTAGATCTTGATGATATCATTGCA 57.567 33.333 19.11 10.84 39.39 4.08
365 366 8.593842 CGAACTAGATCTTGATGATATCATTGC 58.406 37.037 19.11 8.37 39.39 3.56
366 367 9.085250 CCGAACTAGATCTTGATGATATCATTG 57.915 37.037 19.11 12.37 39.39 2.82
367 368 8.811017 ACCGAACTAGATCTTGATGATATCATT 58.189 33.333 19.11 3.10 39.39 2.57
368 369 8.359875 ACCGAACTAGATCTTGATGATATCAT 57.640 34.615 18.21 18.21 39.39 2.45
369 370 7.767250 ACCGAACTAGATCTTGATGATATCA 57.233 36.000 8.10 8.10 35.14 2.15
373 374 9.838339 AATTTAACCGAACTAGATCTTGATGAT 57.162 29.630 11.29 0.00 38.27 2.45
374 375 9.098355 CAATTTAACCGAACTAGATCTTGATGA 57.902 33.333 11.29 0.00 0.00 2.92
375 376 7.852945 GCAATTTAACCGAACTAGATCTTGATG 59.147 37.037 11.29 0.45 0.00 3.07
376 377 7.770897 AGCAATTTAACCGAACTAGATCTTGAT 59.229 33.333 11.29 0.00 0.00 2.57
377 378 7.103641 AGCAATTTAACCGAACTAGATCTTGA 58.896 34.615 11.29 0.00 0.00 3.02
378 379 7.308782 AGCAATTTAACCGAACTAGATCTTG 57.691 36.000 0.00 0.36 0.00 3.02
379 380 9.099454 CTTAGCAATTTAACCGAACTAGATCTT 57.901 33.333 0.00 0.00 0.00 2.40
380 381 8.475639 TCTTAGCAATTTAACCGAACTAGATCT 58.524 33.333 0.00 0.00 0.00 2.75
381 382 8.644318 TCTTAGCAATTTAACCGAACTAGATC 57.356 34.615 0.00 0.00 0.00 2.75
382 383 7.711339 CCTCTTAGCAATTTAACCGAACTAGAT 59.289 37.037 0.00 0.00 0.00 1.98
383 384 7.039882 CCTCTTAGCAATTTAACCGAACTAGA 58.960 38.462 0.00 0.00 0.00 2.43
384 385 7.039882 TCCTCTTAGCAATTTAACCGAACTAG 58.960 38.462 0.00 0.00 0.00 2.57
385 386 6.938507 TCCTCTTAGCAATTTAACCGAACTA 58.061 36.000 0.00 0.00 0.00 2.24
386 387 5.801380 TCCTCTTAGCAATTTAACCGAACT 58.199 37.500 0.00 0.00 0.00 3.01
387 388 5.873164 TCTCCTCTTAGCAATTTAACCGAAC 59.127 40.000 0.00 0.00 0.00 3.95
388 389 6.045072 TCTCCTCTTAGCAATTTAACCGAA 57.955 37.500 0.00 0.00 0.00 4.30
389 390 5.421056 TCTCTCCTCTTAGCAATTTAACCGA 59.579 40.000 0.00 0.00 0.00 4.69
390 391 5.661458 TCTCTCCTCTTAGCAATTTAACCG 58.339 41.667 0.00 0.00 0.00 4.44
391 392 7.331791 TCTTCTCTCCTCTTAGCAATTTAACC 58.668 38.462 0.00 0.00 0.00 2.85
392 393 7.011016 GCTCTTCTCTCCTCTTAGCAATTTAAC 59.989 40.741 0.00 0.00 0.00 2.01
393 394 7.044798 GCTCTTCTCTCCTCTTAGCAATTTAA 58.955 38.462 0.00 0.00 0.00 1.52
394 395 6.407525 GGCTCTTCTCTCCTCTTAGCAATTTA 60.408 42.308 0.00 0.00 0.00 1.40
395 396 5.427378 GCTCTTCTCTCCTCTTAGCAATTT 58.573 41.667 0.00 0.00 0.00 1.82
396 397 4.141733 GGCTCTTCTCTCCTCTTAGCAATT 60.142 45.833 0.00 0.00 0.00 2.32
397 398 3.387699 GGCTCTTCTCTCCTCTTAGCAAT 59.612 47.826 0.00 0.00 0.00 3.56
398 399 2.763448 GGCTCTTCTCTCCTCTTAGCAA 59.237 50.000 0.00 0.00 0.00 3.91
399 400 2.291865 TGGCTCTTCTCTCCTCTTAGCA 60.292 50.000 0.00 0.00 0.00 3.49
400 401 2.383855 TGGCTCTTCTCTCCTCTTAGC 58.616 52.381 0.00 0.00 0.00 3.09
401 402 4.648762 TCAATGGCTCTTCTCTCCTCTTAG 59.351 45.833 0.00 0.00 0.00 2.18
402 403 4.404073 GTCAATGGCTCTTCTCTCCTCTTA 59.596 45.833 0.00 0.00 0.00 2.10
403 404 3.197549 GTCAATGGCTCTTCTCTCCTCTT 59.802 47.826 0.00 0.00 0.00 2.85
404 405 2.765699 GTCAATGGCTCTTCTCTCCTCT 59.234 50.000 0.00 0.00 0.00 3.69
405 406 2.499289 TGTCAATGGCTCTTCTCTCCTC 59.501 50.000 0.00 0.00 0.00 3.71
406 407 2.235898 GTGTCAATGGCTCTTCTCTCCT 59.764 50.000 0.00 0.00 0.00 3.69
407 408 2.626840 GTGTCAATGGCTCTTCTCTCC 58.373 52.381 0.00 0.00 0.00 3.71
408 409 2.266554 CGTGTCAATGGCTCTTCTCTC 58.733 52.381 0.00 0.00 0.00 3.20
409 410 1.066573 CCGTGTCAATGGCTCTTCTCT 60.067 52.381 0.00 0.00 0.00 3.10
410 411 1.066858 TCCGTGTCAATGGCTCTTCTC 60.067 52.381 0.00 0.00 31.82 2.87
411 412 0.976641 TCCGTGTCAATGGCTCTTCT 59.023 50.000 0.00 0.00 31.82 2.85
412 413 1.338200 ACTCCGTGTCAATGGCTCTTC 60.338 52.381 0.00 0.00 31.82 2.87
413 414 0.687354 ACTCCGTGTCAATGGCTCTT 59.313 50.000 0.00 0.00 31.82 2.85
414 415 0.687354 AACTCCGTGTCAATGGCTCT 59.313 50.000 0.00 0.00 31.82 4.09
415 416 1.464997 GAAACTCCGTGTCAATGGCTC 59.535 52.381 0.00 0.00 31.82 4.70
416 417 1.072331 AGAAACTCCGTGTCAATGGCT 59.928 47.619 0.00 0.00 31.82 4.75
417 418 1.523758 AGAAACTCCGTGTCAATGGC 58.476 50.000 0.00 0.00 31.82 4.40
418 419 3.432252 GTGTAGAAACTCCGTGTCAATGG 59.568 47.826 0.00 0.00 0.00 3.16
419 420 4.307432 AGTGTAGAAACTCCGTGTCAATG 58.693 43.478 0.00 0.00 0.00 2.82
420 421 4.557205 GAGTGTAGAAACTCCGTGTCAAT 58.443 43.478 0.00 0.00 40.66 2.57
421 422 3.549423 CGAGTGTAGAAACTCCGTGTCAA 60.549 47.826 0.00 0.00 43.09 3.18
422 423 2.031420 CGAGTGTAGAAACTCCGTGTCA 60.031 50.000 0.00 0.00 43.09 3.58
423 424 2.225019 TCGAGTGTAGAAACTCCGTGTC 59.775 50.000 0.00 0.00 43.09 3.67
424 425 2.224606 TCGAGTGTAGAAACTCCGTGT 58.775 47.619 0.00 0.00 43.09 4.49
425 426 2.983402 TCGAGTGTAGAAACTCCGTG 57.017 50.000 0.00 0.00 43.09 4.94
426 427 3.345414 AGATCGAGTGTAGAAACTCCGT 58.655 45.455 0.00 0.00 43.09 4.69
427 428 3.374367 TGAGATCGAGTGTAGAAACTCCG 59.626 47.826 0.00 0.00 43.09 4.63
428 429 4.636648 TCTGAGATCGAGTGTAGAAACTCC 59.363 45.833 0.00 0.00 43.09 3.85
429 430 5.804692 TCTGAGATCGAGTGTAGAAACTC 57.195 43.478 0.00 0.00 42.68 3.01
430 431 5.449862 GCATCTGAGATCGAGTGTAGAAACT 60.450 44.000 0.00 0.00 0.00 2.66
431 432 4.737765 GCATCTGAGATCGAGTGTAGAAAC 59.262 45.833 0.00 0.00 0.00 2.78
432 433 4.399303 TGCATCTGAGATCGAGTGTAGAAA 59.601 41.667 0.00 0.00 0.00 2.52
433 434 3.947834 TGCATCTGAGATCGAGTGTAGAA 59.052 43.478 0.00 0.00 0.00 2.10
434 435 3.545703 TGCATCTGAGATCGAGTGTAGA 58.454 45.455 0.00 0.00 0.00 2.59
435 436 3.978718 TGCATCTGAGATCGAGTGTAG 57.021 47.619 0.00 0.00 0.00 2.74
436 437 4.140536 AGATGCATCTGAGATCGAGTGTA 58.859 43.478 28.21 0.00 35.42 2.90
437 438 2.957680 AGATGCATCTGAGATCGAGTGT 59.042 45.455 28.21 0.00 35.42 3.55
438 439 3.646611 AGATGCATCTGAGATCGAGTG 57.353 47.619 28.21 0.00 35.42 3.51
439 440 3.304592 CGAAGATGCATCTGAGATCGAGT 60.305 47.826 31.04 15.08 36.21 4.18
440 441 3.236005 CGAAGATGCATCTGAGATCGAG 58.764 50.000 31.04 12.42 36.21 4.04
441 442 2.620585 ACGAAGATGCATCTGAGATCGA 59.379 45.455 36.78 0.00 37.08 3.59
442 443 3.010624 ACGAAGATGCATCTGAGATCG 57.989 47.619 32.02 32.02 38.62 3.69
443 444 5.750547 TGTTTACGAAGATGCATCTGAGATC 59.249 40.000 29.34 20.65 37.19 2.75
444 445 5.664457 TGTTTACGAAGATGCATCTGAGAT 58.336 37.500 29.34 14.17 37.19 2.75
445 446 5.072040 TGTTTACGAAGATGCATCTGAGA 57.928 39.130 29.34 12.66 37.19 3.27
446 447 4.867047 ACTGTTTACGAAGATGCATCTGAG 59.133 41.667 29.34 25.40 37.19 3.35
447 448 4.820897 ACTGTTTACGAAGATGCATCTGA 58.179 39.130 29.34 12.66 37.19 3.27
448 449 6.647212 TTACTGTTTACGAAGATGCATCTG 57.353 37.500 29.34 19.69 37.19 2.90
449 450 7.667043 TTTTACTGTTTACGAAGATGCATCT 57.333 32.000 23.75 23.75 39.22 2.90
474 475 8.113675 GTGTTCGCATTTGAAACTATTGTTTTT 58.886 29.630 6.72 0.00 45.36 1.94
475 476 7.276658 TGTGTTCGCATTTGAAACTATTGTTTT 59.723 29.630 6.72 0.00 45.36 2.43
477 478 6.269315 TGTGTTCGCATTTGAAACTATTGTT 58.731 32.000 0.00 0.00 38.16 2.83
478 479 5.826586 TGTGTTCGCATTTGAAACTATTGT 58.173 33.333 0.00 0.00 0.00 2.71
479 480 5.164158 GCTGTGTTCGCATTTGAAACTATTG 60.164 40.000 0.00 0.00 0.00 1.90
480 481 4.917415 GCTGTGTTCGCATTTGAAACTATT 59.083 37.500 0.00 0.00 0.00 1.73
481 482 4.216257 AGCTGTGTTCGCATTTGAAACTAT 59.784 37.500 0.00 0.00 0.00 2.12
482 483 3.563808 AGCTGTGTTCGCATTTGAAACTA 59.436 39.130 0.00 0.00 0.00 2.24
483 484 2.358898 AGCTGTGTTCGCATTTGAAACT 59.641 40.909 0.00 0.00 0.00 2.66
484 485 2.721090 GAGCTGTGTTCGCATTTGAAAC 59.279 45.455 0.00 0.00 0.00 2.78
485 486 2.357323 TGAGCTGTGTTCGCATTTGAAA 59.643 40.909 0.00 0.00 0.00 2.69
486 487 1.946081 TGAGCTGTGTTCGCATTTGAA 59.054 42.857 0.00 0.00 0.00 2.69
487 488 1.264020 GTGAGCTGTGTTCGCATTTGA 59.736 47.619 0.00 0.00 0.00 2.69
488 489 1.664016 GGTGAGCTGTGTTCGCATTTG 60.664 52.381 0.00 0.00 0.00 2.32
489 490 0.593128 GGTGAGCTGTGTTCGCATTT 59.407 50.000 0.00 0.00 0.00 2.32
490 491 1.568612 CGGTGAGCTGTGTTCGCATT 61.569 55.000 0.00 0.00 0.00 3.56
491 492 2.029288 CGGTGAGCTGTGTTCGCAT 61.029 57.895 0.00 0.00 0.00 4.73
492 493 2.661537 CGGTGAGCTGTGTTCGCA 60.662 61.111 0.00 0.00 0.00 5.10
493 494 2.661866 ACGGTGAGCTGTGTTCGC 60.662 61.111 0.00 0.00 31.98 4.70
494 495 3.234390 CACGGTGAGCTGTGTTCG 58.766 61.111 0.74 0.00 44.72 3.95
500 501 2.535485 TTATGGCCCACGGTGAGCTG 62.535 60.000 14.39 0.00 0.00 4.24
501 502 2.297895 TTATGGCCCACGGTGAGCT 61.298 57.895 14.39 0.00 0.00 4.09
502 503 2.112815 GTTATGGCCCACGGTGAGC 61.113 63.158 10.28 8.09 0.00 4.26
503 504 0.462047 GAGTTATGGCCCACGGTGAG 60.462 60.000 10.28 0.00 0.00 3.51
504 505 0.907704 AGAGTTATGGCCCACGGTGA 60.908 55.000 10.28 0.00 0.00 4.02
505 506 0.035439 AAGAGTTATGGCCCACGGTG 60.035 55.000 0.00 0.00 0.00 4.94
506 507 0.035439 CAAGAGTTATGGCCCACGGT 60.035 55.000 0.00 0.00 0.00 4.83
507 508 0.251916 TCAAGAGTTATGGCCCACGG 59.748 55.000 0.00 0.00 0.00 4.94
508 509 1.656652 CTCAAGAGTTATGGCCCACG 58.343 55.000 0.00 0.00 0.00 4.94
509 510 2.019156 GCCTCAAGAGTTATGGCCCAC 61.019 57.143 0.00 0.00 37.81 4.61
510 511 0.255890 GCCTCAAGAGTTATGGCCCA 59.744 55.000 0.00 0.00 37.81 5.36
511 512 3.102090 GCCTCAAGAGTTATGGCCC 57.898 57.895 0.00 0.00 37.81 5.80
513 514 0.255890 TGGGCCTCAAGAGTTATGGC 59.744 55.000 4.53 0.00 42.56 4.40
514 515 3.303351 AATGGGCCTCAAGAGTTATGG 57.697 47.619 4.53 0.00 0.00 2.74
515 516 4.142093 CCAAAATGGGCCTCAAGAGTTATG 60.142 45.833 4.53 0.00 32.67 1.90
516 517 4.026052 CCAAAATGGGCCTCAAGAGTTAT 58.974 43.478 4.53 0.00 32.67 1.89
517 518 3.181423 ACCAAAATGGGCCTCAAGAGTTA 60.181 43.478 4.53 0.00 43.37 2.24
518 519 2.250924 CCAAAATGGGCCTCAAGAGTT 58.749 47.619 4.53 0.00 32.67 3.01
519 520 1.147817 ACCAAAATGGGCCTCAAGAGT 59.852 47.619 4.53 0.00 43.37 3.24
520 521 1.928868 ACCAAAATGGGCCTCAAGAG 58.071 50.000 4.53 0.00 43.37 2.85
521 522 1.969923 CAACCAAAATGGGCCTCAAGA 59.030 47.619 4.53 0.00 43.37 3.02
522 523 1.969923 TCAACCAAAATGGGCCTCAAG 59.030 47.619 4.53 0.00 43.37 3.02
523 524 1.969923 CTCAACCAAAATGGGCCTCAA 59.030 47.619 4.53 0.00 43.37 3.02
548 549 1.633774 GACTGGACTGAGAAGGGTCA 58.366 55.000 0.00 0.00 34.49 4.02
549 550 0.528470 CGACTGGACTGAGAAGGGTC 59.472 60.000 0.00 0.00 0.00 4.46
550 551 0.112606 TCGACTGGACTGAGAAGGGT 59.887 55.000 0.00 0.00 0.00 4.34
551 552 0.814457 CTCGACTGGACTGAGAAGGG 59.186 60.000 0.00 0.00 31.31 3.95
552 553 1.470890 GACTCGACTGGACTGAGAAGG 59.529 57.143 0.00 0.00 33.93 3.46
553 554 1.470890 GGACTCGACTGGACTGAGAAG 59.529 57.143 0.00 0.00 33.93 2.85
554 555 1.535833 GGACTCGACTGGACTGAGAA 58.464 55.000 0.00 0.00 33.93 2.87
555 556 0.322636 GGGACTCGACTGGACTGAGA 60.323 60.000 0.00 0.00 33.93 3.27
556 557 0.609406 TGGGACTCGACTGGACTGAG 60.609 60.000 0.00 0.00 35.85 3.35
557 558 0.178973 TTGGGACTCGACTGGACTGA 60.179 55.000 0.00 0.00 0.00 3.41
558 559 0.038159 GTTGGGACTCGACTGGACTG 60.038 60.000 0.00 0.00 0.00 3.51
559 560 0.178958 AGTTGGGACTCGACTGGACT 60.179 55.000 0.00 0.00 38.63 3.85
560 561 2.352817 AGTTGGGACTCGACTGGAC 58.647 57.895 0.00 0.00 38.63 4.02
561 562 4.945645 AGTTGGGACTCGACTGGA 57.054 55.556 0.00 0.00 38.63 3.86
564 565 1.407656 TTGGCAGTTGGGACTCGACT 61.408 55.000 0.00 0.00 40.67 4.18
565 566 0.534203 TTTGGCAGTTGGGACTCGAC 60.534 55.000 0.00 0.00 32.54 4.20
568 569 2.646121 CCTTTGGCAGTTGGGACTC 58.354 57.895 0.00 0.00 32.54 3.36
569 570 4.929807 CCTTTGGCAGTTGGGACT 57.070 55.556 0.00 0.00 36.25 3.85
699 705 0.172803 GAAGGAGCGCGAAGGAGTTA 59.827 55.000 12.10 0.00 0.00 2.24
741 757 1.087501 GAGGGAGCCAAATTGACGAC 58.912 55.000 0.00 0.00 0.00 4.34
1076 1092 0.252197 AACCTCATACCCGGTGCTTC 59.748 55.000 0.00 0.00 32.86 3.86
1109 1125 3.620419 ATGGCATCACCCGACGCAA 62.620 57.895 0.00 0.00 37.83 4.85
1173 1210 1.339097 AACAGACAAGGTCTAGCCGT 58.661 50.000 0.00 0.00 41.37 5.68
1196 1233 3.615155 GACCCAGAGAAGAAATTCCAGG 58.385 50.000 0.00 0.00 0.00 4.45
1677 7043 2.498481 TGAGTAAGTGTATCCCCCGTTG 59.502 50.000 0.00 0.00 0.00 4.10
1879 7248 6.405508 CCACTGAAGAAAATTCTCCCATCATG 60.406 42.308 0.00 0.00 36.28 3.07
2098 7485 8.684386 TCACATTACAACATAAGGAAAACAGA 57.316 30.769 0.00 0.00 0.00 3.41
2449 7885 8.961294 AATCCTTATCTGAAGATCACTTTCAG 57.039 34.615 14.18 14.18 36.39 3.02
2480 8296 5.423015 TGATCTTCAGAGTTGGCTTCATAC 58.577 41.667 0.00 0.00 0.00 2.39
2511 8349 6.264744 ACAGAGTACAGTAAGCACACTCTTTA 59.735 38.462 0.00 0.00 42.46 1.85
2540 8378 0.890996 CTCCCAGCGCAGAAAAAGGT 60.891 55.000 11.47 0.00 0.00 3.50
2542 8380 1.211190 GCTCCCAGCGCAGAAAAAG 59.789 57.895 11.47 0.00 0.00 2.27
2587 8441 2.918712 AGACCAGTCACAAGACCAAG 57.081 50.000 0.00 0.00 46.15 3.61
2637 8491 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2638 8492 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2639 8493 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2640 8494 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2641 8495 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2642 8496 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2643 8497 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2644 8498 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2645 8499 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2646 8500 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2647 8501 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2648 8502 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2649 8503 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
2650 8504 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
2651 8505 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
2652 8506 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
2653 8507 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
2654 8508 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2655 8509 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2656 8510 5.011090 TCTACATCCATTTCCGAGACAAG 57.989 43.478 0.00 0.00 0.00 3.16
2657 8511 5.614324 ATCTACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2658 8512 5.596772 TGTATCTACATCCATTTCCGAGACA 59.403 40.000 0.00 0.00 0.00 3.41
2659 8513 6.085555 TGTATCTACATCCATTTCCGAGAC 57.914 41.667 0.00 0.00 0.00 3.36
2660 8514 6.918067 ATGTATCTACATCCATTTCCGAGA 57.082 37.500 0.00 0.00 42.96 4.04
2673 8527 4.743151 GTCGCGAAAATGGATGTATCTACA 59.257 41.667 12.06 0.00 40.98 2.74
2674 8528 4.743151 TGTCGCGAAAATGGATGTATCTAC 59.257 41.667 12.06 0.00 0.00 2.59
2675 8529 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
2676 8530 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
2677 8531 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
2678 8532 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
2679 8533 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
2680 8534 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
2681 8535 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
2682 8536 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
2683 8537 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
2684 8538 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
2685 8539 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
2686 8540 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
2687 8541 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
2688 8542 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
2689 8543 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
2690 8544 2.350899 TTCGGAATTACTTGTCGCGA 57.649 45.000 3.71 3.71 0.00 5.87
2691 8545 2.285602 CCATTCGGAATTACTTGTCGCG 60.286 50.000 0.00 0.00 0.00 5.87
2692 8546 2.933906 TCCATTCGGAATTACTTGTCGC 59.066 45.455 0.00 0.00 38.83 5.19
2693 8547 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
2694 8548 3.877508 CCCTCCATTCGGAATTACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
2695 8549 3.521937 TCCCTCCATTCGGAATTACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
2696 8550 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
2697 8551 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
2698 8552 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
2699 8553 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
2700 8554 4.262894 GCATACTCCCTCCATTCGGAATTA 60.263 45.833 0.00 0.00 42.21 1.40
2701 8555 3.496870 GCATACTCCCTCCATTCGGAATT 60.497 47.826 0.00 0.00 42.21 2.17
2702 8556 2.039084 GCATACTCCCTCCATTCGGAAT 59.961 50.000 0.00 0.00 42.21 3.01
2703 8557 1.416401 GCATACTCCCTCCATTCGGAA 59.584 52.381 0.00 0.00 42.21 4.30
2704 8558 1.048601 GCATACTCCCTCCATTCGGA 58.951 55.000 0.00 0.00 39.79 4.55
2705 8559 1.051812 AGCATACTCCCTCCATTCGG 58.948 55.000 0.00 0.00 0.00 4.30
2706 8560 2.487934 CAAGCATACTCCCTCCATTCG 58.512 52.381 0.00 0.00 0.00 3.34
2707 8561 2.225467 GCAAGCATACTCCCTCCATTC 58.775 52.381 0.00 0.00 0.00 2.67
2708 8562 1.565759 TGCAAGCATACTCCCTCCATT 59.434 47.619 0.00 0.00 0.00 3.16
2709 8563 1.216064 TGCAAGCATACTCCCTCCAT 58.784 50.000 0.00 0.00 0.00 3.41
2710 8564 1.141657 GATGCAAGCATACTCCCTCCA 59.858 52.381 7.64 0.00 36.70 3.86
2711 8565 1.419387 AGATGCAAGCATACTCCCTCC 59.581 52.381 7.64 0.00 36.70 4.30
2712 8566 2.492012 CAGATGCAAGCATACTCCCTC 58.508 52.381 7.64 0.00 36.70 4.30
2713 8567 1.476471 GCAGATGCAAGCATACTCCCT 60.476 52.381 7.64 0.00 41.59 4.20
2714 8568 0.950116 GCAGATGCAAGCATACTCCC 59.050 55.000 7.64 0.00 41.59 4.30
2763 8617 6.627087 TCCTAGTTCATCCAGAAAAGACAT 57.373 37.500 0.00 0.00 38.13 3.06
2765 8619 6.710744 TGTTTCCTAGTTCATCCAGAAAAGAC 59.289 38.462 0.00 0.00 38.13 3.01
2767 8621 7.693969 ATGTTTCCTAGTTCATCCAGAAAAG 57.306 36.000 0.00 0.00 38.13 2.27
2857 8717 5.738208 GCCTTATACGTGCATGGTTACTACT 60.738 44.000 11.36 0.00 0.00 2.57
2858 8718 4.446719 GCCTTATACGTGCATGGTTACTAC 59.553 45.833 11.36 0.00 0.00 2.73
2876 8736 6.716628 AGACAAATTTCATGTGAGAAGCCTTA 59.283 34.615 0.00 0.00 0.00 2.69
2894 8755 9.710900 GAAATCCTTTGGATGTTAAAGACAAAT 57.289 29.630 0.00 0.00 42.27 2.32
2898 8759 7.276438 GCATGAAATCCTTTGGATGTTAAAGAC 59.724 37.037 0.00 0.00 42.27 3.01
2965 8875 2.428530 ACTACCTCGGTCCGAAATTACC 59.571 50.000 16.23 0.00 34.74 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.