AutoCloner

Multiple sequence alignment - TraesCS5B01G325700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G325700	chr5B	100.000	3220	0	0	1	3220	509688352	509685133	0.000000e+00	5947.0
1	TraesCS5B01G325700	chr7B	98.792	3145	28	7	81	3220	726107221	726104082	0.000000e+00	5589.0
2	TraesCS5B01G325700	chr6B	93.737	2890	131	21	208	3085	547718642	547721493	0.000000e+00	4289.0
3	TraesCS5B01G325700	chr6B	87.432	549	43	16	1518	2047	520330888	520331429	2.750000e-170	608.0
4	TraesCS5B01G325700	chr6B	90.859	361	27	6	2427	2782	90027745	90027386	2.250000e-131	479.0
5	TraesCS5B01G325700	chr6B	91.156	147	6	1	3081	3220	547722184	547722330	3.280000e-45	193.0
6	TraesCS5B01G325700	chr7D	94.734	1766	85	8	213	1974	53682239	53680478	0.000000e+00	2739.0
7	TraesCS5B01G325700	chr7D	87.500	496	38	7	2308	2782	54495716	54495224	4.690000e-153	551.0
8	TraesCS5B01G325700	chr7D	90.678	118	4	1	3110	3220	53680481	53680364	2.000000e-32	150.0
9	TraesCS5B01G325700	chr3D	92.270	1423	84	18	1519	2922	505789051	505787636	0.000000e+00	1995.0
10	TraesCS5B01G325700	chr3D	91.489	376	29	3	2410	2782	45525665	45526040	6.160000e-142	514.0
11	TraesCS5B01G325700	chr3D	91.259	286	17	2	2943	3220	505787642	505787357	1.810000e-102	383.0
12	TraesCS5B01G325700	chr3D	86.567	67	9	0	1	67	452823543	452823477	1.240000e-09	75.0
13	TraesCS5B01G325700	chr2A	89.011	910	56	22	1648	2519	306138648	306139551	0.000000e+00	1086.0
14	TraesCS5B01G325700	chr2A	91.771	401	25	3	2522	2922	306139622	306140014	4.690000e-153	551.0
15	TraesCS5B01G325700	chr2A	91.089	404	29	4	2310	2708	376798021	376798422	1.020000e-149	540.0
16	TraesCS5B01G325700	chr2A	92.281	285	15	1	2943	3220	306140008	306140292	6.470000e-107	398.0
17	TraesCS5B01G325700	chr2A	95.699	93	4	0	1518	1610	306138195	306138287	2.000000e-32	150.0
18	TraesCS5B01G325700	chr2D	91.627	633	47	5	2153	2782	484037031	484037660	0.000000e+00	870.0
19	TraesCS5B01G325700	chr1D	85.025	808	64	21	736	1516	371661290	371660513	0.000000e+00	769.0
20	TraesCS5B01G325700	chr1B	84.901	808	65	21	736	1516	496098836	496098059	0.000000e+00	763.0
21	TraesCS5B01G325700	chr1A	86.677	668	55	17	857	1516	471324052	471323411	0.000000e+00	710.0
22	TraesCS5B01G325700	chr1A	86.364	198	14	5	1633	1819	44327950	44327755	1.510000e-48	204.0
23	TraesCS5B01G325700	chr1A	86.364	198	14	5	1633	1819	44358186	44357991	1.510000e-48	204.0
24	TraesCS5B01G325700	chr2B	84.727	622	53	22	1646	2227	357169719	357170338	4.630000e-163	584.0
25	TraesCS5B01G325700	chr2B	89.277	401	26	5	2522	2922	357170938	357171321	1.340000e-133	486.0
26	TraesCS5B01G325700	chr2B	92.278	259	16	3	2265	2523	357170570	357170824	6.560000e-97	364.0
27	TraesCS5B01G325700	chr2B	90.175	285	18	4	2943	3220	357171315	357171596	2.360000e-96	363.0
28	TraesCS5B01G325700	chr2B	88.142	253	28	1	2156	2408	416062417	416062167	1.880000e-77	300.0
29	TraesCS5B01G325700	chr2B	95.699	93	4	0	1518	1610	357169266	357169358	2.000000e-32	150.0
30	TraesCS5B01G325700	chr4A	89.136	405	34	8	2310	2706	443843824	443843422	2.230000e-136	496.0
31	TraesCS5B01G325700	chr4A	91.045	67	6	0	1	67	485278296	485278230	1.230000e-14	91.6
32	TraesCS5B01G325700	chr4B	89.521	334	32	2	2153	2486	545866437	545866107	1.380000e-113	420.0
33	TraesCS5B01G325700	chr3B	85.377	212	31	0	2132	2343	810247281	810247492	1.500000e-53	220.0
34	TraesCS5B01G325700	chr5A	81.413	269	40	5	2085	2343	572508517	572508249	9.050000e-51	211.0
35	TraesCS5B01G325700	chr5A	93.333	60	4	0	1518	1577	139483915	139483856	4.420000e-14	89.8
36	TraesCS5B01G325700	chr5A	93.333	60	4	0	1518	1577	139484056	139483997	4.420000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G325700	chr5B	509685133	509688352	3219	True	5947.00	5947	100.0000	1	3220	1	chr5B.!!$R1	3219
1	TraesCS5B01G325700	chr7B	726104082	726107221	3139	True	5589.00	5589	98.7920	81	3220	1	chr7B.!!$R1	3139
2	TraesCS5B01G325700	chr6B	547718642	547722330	3688	False	2241.00	4289	92.4465	208	3220	2	chr6B.!!$F2	3012
3	TraesCS5B01G325700	chr6B	520330888	520331429	541	False	608.00	608	87.4320	1518	2047	1	chr6B.!!$F1	529
4	TraesCS5B01G325700	chr7D	53680364	53682239	1875	True	1444.50	2739	92.7060	213	3220	2	chr7D.!!$R2	3007
5	TraesCS5B01G325700	chr3D	505787357	505789051	1694	True	1189.00	1995	91.7645	1519	3220	2	chr3D.!!$R2	1701
6	TraesCS5B01G325700	chr2A	306138195	306140292	2097	False	546.25	1086	92.1905	1518	3220	4	chr2A.!!$F2	1702
7	TraesCS5B01G325700	chr2D	484037031	484037660	629	False	870.00	870	91.6270	2153	2782	1	chr2D.!!$F1	629
8	TraesCS5B01G325700	chr1D	371660513	371661290	777	True	769.00	769	85.0250	736	1516	1	chr1D.!!$R1	780
9	TraesCS5B01G325700	chr1B	496098059	496098836	777	True	763.00	763	84.9010	736	1516	1	chr1B.!!$R1	780
10	TraesCS5B01G325700	chr1A	471323411	471324052	641	True	710.00	710	86.6770	857	1516	1	chr1A.!!$R3	659
11	TraesCS5B01G325700	chr2B	357169266	357171596	2330	False	389.40	584	90.4312	1518	3220	5	chr2B.!!$F1	1702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
148	149	0.108138	CGTGGGAAGCCTAGGAACAG	60.108	60.0	14.75	0.0	0.0	3.16	F
199	200	0.389025	ACGCAGCGATACATCCATCA	59.611	50.0	24.65	0.0	0.0	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1689	2062	6.148150	TCCACTGGTGATTGTAACGAAATAAC	59.852	38.462	1.93	0.00	0.00	1.89	R
2555	3281	4.825634	AGGTGTTGGCATCTATGATCATTG	59.174	41.667	14.65	12.33	33.58	2.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	6.670695	AAATTTATGCTCAAAGTTGGACCT	57.329	33.333	0.00	0.00	0.00	3.85
26	27	6.670695	AATTTATGCTCAAAGTTGGACCTT	57.329	33.333	0.00	0.00	0.00	3.50
27	28	5.452078	TTTATGCTCAAAGTTGGACCTTG	57.548	39.130	0.00	0.00	0.00	3.61
28	29	2.727123	TGCTCAAAGTTGGACCTTGA	57.273	45.000	0.00	0.00	0.00	3.02
29	30	3.011566	TGCTCAAAGTTGGACCTTGAA	57.988	42.857	0.00	0.00	0.00	2.69
30	31	3.360867	TGCTCAAAGTTGGACCTTGAAA	58.639	40.909	0.00	0.00	0.00	2.69
31	32	3.766591	TGCTCAAAGTTGGACCTTGAAAA	59.233	39.130	0.00	0.00	0.00	2.29
32	33	4.142182	TGCTCAAAGTTGGACCTTGAAAAG	60.142	41.667	0.00	0.00	45.69	2.27
33	34	4.142160	GCTCAAAGTTGGACCTTGAAAAGT	60.142	41.667	0.00	0.00	44.25	2.66
34	35	5.576447	TCAAAGTTGGACCTTGAAAAGTC	57.424	39.130	0.00	0.00	44.25	3.01
35	36	4.401202	TCAAAGTTGGACCTTGAAAAGTCC	59.599	41.667	7.02	7.02	44.25	3.85
36	37	2.572290	AGTTGGACCTTGAAAAGTCCG	58.428	47.619	8.89	0.00	44.25	4.79
37	38	1.607148	GTTGGACCTTGAAAAGTCCGG	59.393	52.381	0.00	0.00	44.25	5.14
38	39	1.133363	TGGACCTTGAAAAGTCCGGA	58.867	50.000	0.00	0.00	44.25	5.14
39	40	1.202722	TGGACCTTGAAAAGTCCGGAC	60.203	52.381	27.67	27.67	44.25	4.79
40	41	1.145803	GACCTTGAAAAGTCCGGACG	58.854	55.000	28.26	14.08	44.25	4.79
41	42	0.883370	ACCTTGAAAAGTCCGGACGC	60.883	55.000	28.26	18.66	44.25	5.19
42	43	0.882927	CCTTGAAAAGTCCGGACGCA	60.883	55.000	28.26	20.86	44.25	5.24
43	44	0.234884	CTTGAAAAGTCCGGACGCAC	59.765	55.000	28.26	19.93	39.70	5.34
44	45	0.179067	TTGAAAAGTCCGGACGCACT	60.179	50.000	28.26	14.50	36.20	4.40
45	46	0.675083	TGAAAAGTCCGGACGCACTA	59.325	50.000	28.26	13.69	36.20	2.74
46	47	1.274167	TGAAAAGTCCGGACGCACTAT	59.726	47.619	28.26	12.86	36.20	2.12
47	48	2.492881	TGAAAAGTCCGGACGCACTATA	59.507	45.455	28.26	10.51	36.20	1.31
48	49	3.131577	TGAAAAGTCCGGACGCACTATAT	59.868	43.478	28.26	5.88	36.20	0.86
49	50	3.814005	AAAGTCCGGACGCACTATATT	57.186	42.857	28.26	12.07	36.20	1.28
50	51	3.814005	AAGTCCGGACGCACTATATTT	57.186	42.857	28.26	11.33	36.20	1.40
51	52	3.814005	AGTCCGGACGCACTATATTTT	57.186	42.857	28.26	3.70	36.20	1.82
52	53	4.924305	AGTCCGGACGCACTATATTTTA	57.076	40.909	28.26	0.00	36.20	1.52
53	54	4.868067	AGTCCGGACGCACTATATTTTAG	58.132	43.478	28.26	0.00	36.20	1.85
54	55	4.581824	AGTCCGGACGCACTATATTTTAGA	59.418	41.667	28.26	0.00	36.20	2.10
55	56	5.068198	AGTCCGGACGCACTATATTTTAGAA	59.932	40.000	28.26	0.00	36.20	2.10
56	57	5.924825	GTCCGGACGCACTATATTTTAGAAT	59.075	40.000	20.85	0.00	0.00	2.40
57	58	7.040201	AGTCCGGACGCACTATATTTTAGAATA	60.040	37.037	28.26	0.00	36.20	1.75
58	59	7.272948	GTCCGGACGCACTATATTTTAGAATAG	59.727	40.741	20.85	0.00	31.58	1.73
59	60	7.175467	TCCGGACGCACTATATTTTAGAATAGA	59.825	37.037	0.00	0.00	31.58	1.98
60	61	7.485277	CCGGACGCACTATATTTTAGAATAGAG	59.515	40.741	0.00	6.20	40.96	2.43
61	62	7.485277	CGGACGCACTATATTTTAGAATAGAGG	59.515	40.741	11.17	3.44	39.99	3.69
62	63	7.760340	GGACGCACTATATTTTAGAATAGAGGG	59.240	40.741	11.17	8.57	41.35	4.30
63	64	8.418597	ACGCACTATATTTTAGAATAGAGGGA	57.581	34.615	12.72	0.00	41.06	4.20
64	65	8.524487	ACGCACTATATTTTAGAATAGAGGGAG	58.476	37.037	12.72	11.66	41.06	4.30
65	66	8.524487	CGCACTATATTTTAGAATAGAGGGAGT	58.476	37.037	12.72	0.00	41.06	3.85
73	74	7.786046	TTTAGAATAGAGGGAGTACAACACA	57.214	36.000	0.00	0.00	0.00	3.72
74	75	7.786046	TTAGAATAGAGGGAGTACAACACAA	57.214	36.000	0.00	0.00	0.00	3.33
75	76	6.875972	AGAATAGAGGGAGTACAACACAAT	57.124	37.500	0.00	0.00	0.00	2.71
76	77	7.259088	AGAATAGAGGGAGTACAACACAATT	57.741	36.000	0.00	0.00	0.00	2.32
77	78	8.375493	AGAATAGAGGGAGTACAACACAATTA	57.625	34.615	0.00	0.00	0.00	1.40
78	79	8.822805	AGAATAGAGGGAGTACAACACAATTAA	58.177	33.333	0.00	0.00	0.00	1.40
79	80	9.444600	GAATAGAGGGAGTACAACACAATTAAA	57.555	33.333	0.00	0.00	0.00	1.52
97	98	8.698854	ACAATTAAACATTAAACACATTCAGCG	58.301	29.630	0.00	0.00	0.00	5.18
135	136	1.826340	CTGGTGATGTCCACGTGGGA	61.826	60.000	33.40	20.94	46.62	4.37
148	149	0.108138	CGTGGGAAGCCTAGGAACAG	60.108	60.000	14.75	0.00	0.00	3.16
196	197	1.732941	AAAACGCAGCGATACATCCA	58.267	45.000	24.65	0.00	0.00	3.41
198	199	1.502231	AACGCAGCGATACATCCATC	58.498	50.000	24.65	0.00	0.00	3.51
199	200	0.389025	ACGCAGCGATACATCCATCA	59.611	50.000	24.65	0.00	0.00	3.07
200	201	1.202521	ACGCAGCGATACATCCATCAA	60.203	47.619	24.65	0.00	0.00	2.57
201	202	1.193203	CGCAGCGATACATCCATCAAC	59.807	52.381	9.98	0.00	0.00	3.18
205	206	1.193203	GCGATACATCCATCAACTGCG	59.807	52.381	0.00	0.00	0.00	5.18
206	207	2.742774	CGATACATCCATCAACTGCGA	58.257	47.619	0.00	0.00	0.00	5.10
209	213	1.575244	ACATCCATCAACTGCGATCG	58.425	50.000	11.69	11.69	0.00	3.69
341	345	1.600076	CACTTGAGCAGCACAGCCT	60.600	57.895	0.00	0.00	34.23	4.58
457	461	5.878406	TGTTATCAATCCCTTCTCTCCTC	57.122	43.478	0.00	0.00	0.00	3.71
458	462	4.656112	TGTTATCAATCCCTTCTCTCCTCC	59.344	45.833	0.00	0.00	0.00	4.30
459	463	3.723098	ATCAATCCCTTCTCTCCTCCT	57.277	47.619	0.00	0.00	0.00	3.69
1418	1456	9.449719	ACAGATAAGGATTTAACACTTAACCAG	57.550	33.333	0.00	0.00	31.25	4.00
1707	2080	7.061441	TCGACTGAGTTATTTCGTTACAATCAC	59.939	37.037	0.00	0.00	33.20	3.06
2555	3281	4.457257	GGAGTTGCAGAATATGAATAGGGC	59.543	45.833	0.00	0.00	0.00	5.19
2855	3583	8.630054	TGCAACTTTACTCATAATACCTTTGT	57.370	30.769	0.00	0.00	0.00	2.83
3049	3824	6.712547	ACATGAGTAAAAGAAGCAGCTAAACT	59.287	34.615	0.00	0.00	0.00	2.66
3182	4659	4.889780	AGTTCCTGACCTCATTCTAGGAT	58.110	43.478	0.00	0.00	39.15	3.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	8.189119	AGGTCCAACTTTGAGCATAAATTTAA	57.811	30.769	1.21	0.00	0.00	1.52
1	2	7.775053	AGGTCCAACTTTGAGCATAAATTTA	57.225	32.000	0.00	0.00	0.00	1.40
2	3	6.670695	AGGTCCAACTTTGAGCATAAATTT	57.329	33.333	0.00	0.00	0.00	1.82
3	4	6.267471	TCAAGGTCCAACTTTGAGCATAAATT	59.733	34.615	1.03	0.00	38.94	1.82
4	5	5.774690	TCAAGGTCCAACTTTGAGCATAAAT	59.225	36.000	1.03	0.00	38.94	1.40
5	6	5.136828	TCAAGGTCCAACTTTGAGCATAAA	58.863	37.500	1.03	0.00	38.94	1.40
6	7	4.724399	TCAAGGTCCAACTTTGAGCATAA	58.276	39.130	1.03	0.00	38.94	1.90
7	8	4.365514	TCAAGGTCCAACTTTGAGCATA	57.634	40.909	1.03	0.00	38.94	3.14
8	9	3.228188	TCAAGGTCCAACTTTGAGCAT	57.772	42.857	1.03	0.00	38.94	3.79
9	10	2.727123	TCAAGGTCCAACTTTGAGCA	57.273	45.000	1.03	0.00	38.94	4.26
10	11	4.142160	ACTTTTCAAGGTCCAACTTTGAGC	60.142	41.667	5.05	0.00	43.51	4.26
11	12	5.450550	GGACTTTTCAAGGTCCAACTTTGAG	60.451	44.000	14.39	0.00	43.51	3.02
12	13	5.576447	GACTTTTCAAGGTCCAACTTTGA	57.424	39.130	1.03	1.03	41.53	2.69
20	21	1.520494	GTCCGGACTTTTCAAGGTCC	58.480	55.000	27.64	10.19	46.00	4.46
21	22	1.145803	CGTCCGGACTTTTCAAGGTC	58.854	55.000	30.92	1.41	0.00	3.85
22	23	0.883370	GCGTCCGGACTTTTCAAGGT	60.883	55.000	30.92	0.00	0.00	3.50
23	24	0.882927	TGCGTCCGGACTTTTCAAGG	60.883	55.000	30.92	14.56	0.00	3.61
24	25	0.234884	GTGCGTCCGGACTTTTCAAG	59.765	55.000	30.92	15.29	33.56	3.02
25	26	0.179067	AGTGCGTCCGGACTTTTCAA	60.179	50.000	30.92	8.18	44.30	2.69
26	27	0.675083	TAGTGCGTCCGGACTTTTCA	59.325	50.000	30.92	19.55	44.30	2.69
27	28	2.005971	ATAGTGCGTCCGGACTTTTC	57.994	50.000	30.92	17.94	44.30	2.29
28	29	3.814005	ATATAGTGCGTCCGGACTTTT	57.186	42.857	30.92	16.27	44.30	2.27
29	30	3.814005	AATATAGTGCGTCCGGACTTT	57.186	42.857	30.92	15.94	44.30	2.66
30	31	3.814005	AAATATAGTGCGTCCGGACTT	57.186	42.857	30.92	13.84	44.30	3.01
32	33	4.863491	TCTAAAATATAGTGCGTCCGGAC	58.137	43.478	25.28	25.28	36.69	4.79
33	34	5.518848	TTCTAAAATATAGTGCGTCCGGA	57.481	39.130	0.00	0.00	0.00	5.14
34	35	7.310664	TCTATTCTAAAATATAGTGCGTCCGG	58.689	38.462	0.00	0.00	0.00	5.14
35	36	7.485277	CCTCTATTCTAAAATATAGTGCGTCCG	59.515	40.741	0.00	0.00	0.00	4.79
36	37	7.760340	CCCTCTATTCTAAAATATAGTGCGTCC	59.240	40.741	0.00	0.00	0.00	4.79
37	38	8.521176	TCCCTCTATTCTAAAATATAGTGCGTC	58.479	37.037	0.00	0.00	0.00	5.19
38	39	8.418597	TCCCTCTATTCTAAAATATAGTGCGT	57.581	34.615	0.00	0.00	0.00	5.24
39	40	8.524487	ACTCCCTCTATTCTAAAATATAGTGCG	58.476	37.037	0.00	0.00	0.00	5.34
47	48	8.822805	TGTGTTGTACTCCCTCTATTCTAAAAT	58.177	33.333	0.00	0.00	0.00	1.82
48	49	8.197592	TGTGTTGTACTCCCTCTATTCTAAAA	57.802	34.615	0.00	0.00	0.00	1.52
49	50	7.786046	TGTGTTGTACTCCCTCTATTCTAAA	57.214	36.000	0.00	0.00	0.00	1.85
50	51	7.786046	TTGTGTTGTACTCCCTCTATTCTAA	57.214	36.000	0.00	0.00	0.00	2.10
51	52	7.973048	ATTGTGTTGTACTCCCTCTATTCTA	57.027	36.000	0.00	0.00	0.00	2.10
52	53	6.875972	ATTGTGTTGTACTCCCTCTATTCT	57.124	37.500	0.00	0.00	0.00	2.40
53	54	9.444600	TTTAATTGTGTTGTACTCCCTCTATTC	57.555	33.333	0.00	0.00	0.00	1.75
54	55	9.227777	GTTTAATTGTGTTGTACTCCCTCTATT	57.772	33.333	0.00	0.00	0.00	1.73
55	56	8.380099	TGTTTAATTGTGTTGTACTCCCTCTAT	58.620	33.333	0.00	0.00	0.00	1.98
56	57	7.737869	TGTTTAATTGTGTTGTACTCCCTCTA	58.262	34.615	0.00	0.00	0.00	2.43
57	58	6.597562	TGTTTAATTGTGTTGTACTCCCTCT	58.402	36.000	0.00	0.00	0.00	3.69
58	59	6.870971	TGTTTAATTGTGTTGTACTCCCTC	57.129	37.500	0.00	0.00	0.00	4.30
59	60	7.833285	AATGTTTAATTGTGTTGTACTCCCT	57.167	32.000	0.00	0.00	0.00	4.20
60	61	9.968870	TTTAATGTTTAATTGTGTTGTACTCCC	57.031	29.630	0.00	0.00	0.00	4.30
70	71	9.796062	GCTGAATGTGTTTAATGTTTAATTGTG	57.204	29.630	0.00	0.00	0.00	3.33
71	72	8.698854	CGCTGAATGTGTTTAATGTTTAATTGT	58.301	29.630	0.00	0.00	0.00	2.71
72	73	8.161610	CCGCTGAATGTGTTTAATGTTTAATTG	58.838	33.333	0.00	0.00	0.00	2.32
73	74	7.148656	GCCGCTGAATGTGTTTAATGTTTAATT	60.149	33.333	0.00	0.00	0.00	1.40
74	75	6.310224	GCCGCTGAATGTGTTTAATGTTTAAT	59.690	34.615	0.00	0.00	0.00	1.40
75	76	5.631512	GCCGCTGAATGTGTTTAATGTTTAA	59.368	36.000	0.00	0.00	0.00	1.52
76	77	5.157781	GCCGCTGAATGTGTTTAATGTTTA	58.842	37.500	0.00	0.00	0.00	2.01
77	78	3.987220	GCCGCTGAATGTGTTTAATGTTT	59.013	39.130	0.00	0.00	0.00	2.83
78	79	3.574614	GCCGCTGAATGTGTTTAATGTT	58.425	40.909	0.00	0.00	0.00	2.71
79	80	2.414029	CGCCGCTGAATGTGTTTAATGT	60.414	45.455	0.00	0.00	0.00	2.71
135	136	1.406069	CGATGCACTGTTCCTAGGCTT	60.406	52.381	2.96	0.00	0.00	4.35
148	149	0.304705	CGCTACCCAAATCGATGCAC	59.695	55.000	0.00	0.00	0.00	4.57
190	191	1.575244	CGATCGCAGTTGATGGATGT	58.425	50.000	0.26	0.00	0.00	3.06
191	192	0.234106	GCGATCGCAGTTGATGGATG	59.766	55.000	33.89	0.00	41.49	3.51
192	193	0.882042	GGCGATCGCAGTTGATGGAT	60.882	55.000	38.00	0.00	44.11	3.41
194	195	1.522355	AGGCGATCGCAGTTGATGG	60.522	57.895	38.00	0.00	44.11	3.51
196	197	0.391661	AACAGGCGATCGCAGTTGAT	60.392	50.000	38.00	24.19	44.11	2.57
198	199	0.179215	GAAACAGGCGATCGCAGTTG	60.179	55.000	34.98	30.78	44.11	3.16
199	200	0.320771	AGAAACAGGCGATCGCAGTT	60.321	50.000	38.00	34.33	44.11	3.16
200	201	0.737715	GAGAAACAGGCGATCGCAGT	60.738	55.000	38.00	31.33	44.11	4.40
201	202	0.459237	AGAGAAACAGGCGATCGCAG	60.459	55.000	38.00	30.70	44.11	5.18
205	206	3.443976	GAGAGAAGAGAAACAGGCGATC	58.556	50.000	0.00	0.00	0.00	3.69
206	207	2.159310	CGAGAGAAGAGAAACAGGCGAT	60.159	50.000	0.00	0.00	0.00	4.58
457	461	1.199615	GGGTGAGAAGAAGGAGGAGG	58.800	60.000	0.00	0.00	0.00	4.30
458	462	2.107366	GAGGGTGAGAAGAAGGAGGAG	58.893	57.143	0.00	0.00	0.00	3.69
459	463	1.719378	AGAGGGTGAGAAGAAGGAGGA	59.281	52.381	0.00	0.00	0.00	3.71
1689	2062	6.148150	TCCACTGGTGATTGTAACGAAATAAC	59.852	38.462	1.93	0.00	0.00	1.89
2555	3281	4.825634	AGGTGTTGGCATCTATGATCATTG	59.174	41.667	14.65	12.33	33.58	2.82
3182	4659	0.253044	GTACCAGGCTCCAATCAGCA	59.747	55.000	0.00	0.00	41.65	4.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.