Multiple sequence alignment - TraesCS5B01G325100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G325100 chr5B 100.000 2615 0 0 1 2615 509171127 509173741 0.000000e+00 4830.0
1 TraesCS5B01G325100 chr5B 84.770 1044 89 28 816 1828 509190996 509192000 0.000000e+00 983.0
2 TraesCS5B01G325100 chr5D 93.511 1310 41 14 560 1857 422419801 422421078 0.000000e+00 1908.0
3 TraesCS5B01G325100 chr5D 84.125 1052 91 34 816 1828 422436761 422437775 0.000000e+00 948.0
4 TraesCS5B01G325100 chr5D 86.375 800 78 10 1834 2613 422421221 422422009 0.000000e+00 845.0
5 TraesCS5B01G325100 chr5D 85.217 115 11 5 670 783 422436646 422436755 2.130000e-21 113.0
6 TraesCS5B01G325100 chr5A 89.325 1452 61 34 560 1999 535653223 535654592 0.000000e+00 1736.0
7 TraesCS5B01G325100 chr5A 85.327 995 76 32 816 1786 535674123 535675071 0.000000e+00 965.0
8 TraesCS5B01G325100 chr7A 87.065 201 21 5 252 449 115736452 115736254 3.390000e-54 222.0
9 TraesCS5B01G325100 chr6D 88.764 178 19 1 264 441 390489582 390489406 1.580000e-52 217.0
10 TraesCS5B01G325100 chr6D 88.202 178 21 0 264 441 390721264 390721087 2.040000e-51 213.0
11 TraesCS5B01G325100 chr6D 87.097 93 10 2 169 260 390481421 390481330 1.280000e-18 104.0
12 TraesCS5B01G325100 chr6B 87.640 178 22 0 263 440 644800995 644800818 9.490000e-50 207.0
13 TraesCS5B01G325100 chr6B 85.946 185 25 1 253 437 34309793 34309976 2.050000e-46 196.0
14 TraesCS5B01G325100 chr6B 85.870 92 11 2 170 260 545218498 545218588 2.140000e-16 97.1
15 TraesCS5B01G325100 chr4D 87.079 178 23 0 264 441 385733833 385734010 4.410000e-48 202.0
16 TraesCS5B01G325100 chr4D 86.316 95 8 5 160 252 502056339 502056248 5.960000e-17 99.0
17 TraesCS5B01G325100 chr2A 87.500 176 21 1 267 441 218122425 218122250 4.410000e-48 202.0
18 TraesCS5B01G325100 chr7D 86.413 184 23 1 260 441 540860180 540860363 1.590000e-47 200.0
19 TraesCS5B01G325100 chr3D 86.517 178 24 0 264 441 533865153 533865330 2.050000e-46 196.0
20 TraesCS5B01G325100 chr3A 86.813 91 10 2 170 259 17450332 17450243 1.660000e-17 100.0
21 TraesCS5B01G325100 chrUn 84.946 93 13 1 153 245 345756792 345756883 2.770000e-15 93.5
22 TraesCS5B01G325100 chrUn 84.946 93 13 1 153 245 353376251 353376342 2.770000e-15 93.5
23 TraesCS5B01G325100 chrUn 82.692 104 14 4 168 268 45501062 45501164 3.580000e-14 89.8
24 TraesCS5B01G325100 chr3B 84.946 93 13 1 153 245 829904717 829904626 2.770000e-15 93.5
25 TraesCS5B01G325100 chr3B 84.946 93 13 1 153 245 830027016 830026925 2.770000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G325100 chr5B 509171127 509173741 2614 False 4830.0 4830 100.000 1 2615 1 chr5B.!!$F1 2614
1 TraesCS5B01G325100 chr5B 509190996 509192000 1004 False 983.0 983 84.770 816 1828 1 chr5B.!!$F2 1012
2 TraesCS5B01G325100 chr5D 422419801 422422009 2208 False 1376.5 1908 89.943 560 2613 2 chr5D.!!$F1 2053
3 TraesCS5B01G325100 chr5D 422436646 422437775 1129 False 530.5 948 84.671 670 1828 2 chr5D.!!$F2 1158
4 TraesCS5B01G325100 chr5A 535653223 535654592 1369 False 1736.0 1736 89.325 560 1999 1 chr5A.!!$F1 1439
5 TraesCS5B01G325100 chr5A 535674123 535675071 948 False 965.0 965 85.327 816 1786 1 chr5A.!!$F2 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 695 0.533531 CATGCCCGCAGAGAAGCATA 60.534 55.0 0.0 0.0 40.17 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2673 0.174162 GGATCCTTGTGGTGCATTGC 59.826 55.0 3.84 0.46 34.23 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 6.655078 ATTGTTTCATGATAACCCATAGGC 57.345 37.500 14.25 0.00 36.11 3.93
69 70 5.122707 TGTTTCATGATAACCCATAGGCA 57.877 39.130 14.25 0.00 36.11 4.75
70 71 5.704354 TGTTTCATGATAACCCATAGGCAT 58.296 37.500 14.25 0.00 36.11 4.40
71 72 5.535783 TGTTTCATGATAACCCATAGGCATG 59.464 40.000 14.25 0.00 36.11 4.06
72 73 3.689347 TCATGATAACCCATAGGCATGC 58.311 45.455 9.90 9.90 36.11 4.06
73 74 3.074242 TCATGATAACCCATAGGCATGCA 59.926 43.478 21.36 0.00 36.11 3.96
74 75 3.591695 TGATAACCCATAGGCATGCAA 57.408 42.857 21.36 7.29 36.11 4.08
75 76 3.908476 TGATAACCCATAGGCATGCAAA 58.092 40.909 21.36 6.87 36.11 3.68
76 77 4.482030 TGATAACCCATAGGCATGCAAAT 58.518 39.130 21.36 9.18 36.11 2.32
77 78 4.281435 TGATAACCCATAGGCATGCAAATG 59.719 41.667 21.36 20.18 36.11 2.32
78 79 0.754472 ACCCATAGGCATGCAAATGC 59.246 50.000 21.36 3.60 46.27 3.56
89 90 2.917701 TGCAAATGCGTGACCTAATG 57.082 45.000 0.35 0.00 45.83 1.90
90 91 2.158559 TGCAAATGCGTGACCTAATGT 58.841 42.857 0.35 0.00 45.83 2.71
91 92 2.095314 TGCAAATGCGTGACCTAATGTG 60.095 45.455 0.35 0.00 45.83 3.21
92 93 2.095263 GCAAATGCGTGACCTAATGTGT 60.095 45.455 0.00 0.00 0.00 3.72
93 94 3.126171 GCAAATGCGTGACCTAATGTGTA 59.874 43.478 0.00 0.00 0.00 2.90
94 95 4.647964 CAAATGCGTGACCTAATGTGTAC 58.352 43.478 0.00 0.00 0.00 2.90
95 96 2.373540 TGCGTGACCTAATGTGTACC 57.626 50.000 0.00 0.00 0.00 3.34
96 97 1.897133 TGCGTGACCTAATGTGTACCT 59.103 47.619 0.00 0.00 0.00 3.08
97 98 2.300723 TGCGTGACCTAATGTGTACCTT 59.699 45.455 0.00 0.00 0.00 3.50
98 99 2.928116 GCGTGACCTAATGTGTACCTTC 59.072 50.000 0.00 0.00 0.00 3.46
99 100 3.368116 GCGTGACCTAATGTGTACCTTCT 60.368 47.826 0.00 0.00 0.00 2.85
100 101 4.174009 CGTGACCTAATGTGTACCTTCTG 58.826 47.826 0.00 0.00 0.00 3.02
101 102 4.082408 CGTGACCTAATGTGTACCTTCTGA 60.082 45.833 0.00 0.00 0.00 3.27
102 103 5.394224 CGTGACCTAATGTGTACCTTCTGAT 60.394 44.000 0.00 0.00 0.00 2.90
103 104 6.043411 GTGACCTAATGTGTACCTTCTGATC 58.957 44.000 0.00 0.00 0.00 2.92
104 105 5.128827 TGACCTAATGTGTACCTTCTGATCC 59.871 44.000 0.00 0.00 0.00 3.36
105 106 5.281314 ACCTAATGTGTACCTTCTGATCCT 58.719 41.667 0.00 0.00 0.00 3.24
106 107 6.441222 ACCTAATGTGTACCTTCTGATCCTA 58.559 40.000 0.00 0.00 0.00 2.94
107 108 6.901300 ACCTAATGTGTACCTTCTGATCCTAA 59.099 38.462 0.00 0.00 0.00 2.69
108 109 7.147707 ACCTAATGTGTACCTTCTGATCCTAAC 60.148 40.741 0.00 0.00 0.00 2.34
109 110 5.615925 ATGTGTACCTTCTGATCCTAACC 57.384 43.478 0.00 0.00 0.00 2.85
110 111 4.422057 TGTGTACCTTCTGATCCTAACCA 58.578 43.478 0.00 0.00 0.00 3.67
111 112 4.466370 TGTGTACCTTCTGATCCTAACCAG 59.534 45.833 0.00 0.00 0.00 4.00
112 113 4.466726 GTGTACCTTCTGATCCTAACCAGT 59.533 45.833 0.00 0.00 0.00 4.00
113 114 5.655532 GTGTACCTTCTGATCCTAACCAGTA 59.344 44.000 0.00 0.00 0.00 2.74
114 115 5.655532 TGTACCTTCTGATCCTAACCAGTAC 59.344 44.000 0.00 0.00 0.00 2.73
115 116 4.684724 ACCTTCTGATCCTAACCAGTACA 58.315 43.478 0.00 0.00 0.00 2.90
116 117 5.091552 ACCTTCTGATCCTAACCAGTACAA 58.908 41.667 0.00 0.00 0.00 2.41
117 118 5.726793 ACCTTCTGATCCTAACCAGTACAAT 59.273 40.000 0.00 0.00 0.00 2.71
118 119 6.127026 ACCTTCTGATCCTAACCAGTACAATC 60.127 42.308 0.00 0.00 0.00 2.67
119 120 6.127054 CCTTCTGATCCTAACCAGTACAATCA 60.127 42.308 0.00 0.00 0.00 2.57
120 121 6.867519 TCTGATCCTAACCAGTACAATCAA 57.132 37.500 0.00 0.00 0.00 2.57
121 122 7.252612 TCTGATCCTAACCAGTACAATCAAA 57.747 36.000 0.00 0.00 0.00 2.69
122 123 7.861629 TCTGATCCTAACCAGTACAATCAAAT 58.138 34.615 0.00 0.00 0.00 2.32
123 124 7.770433 TCTGATCCTAACCAGTACAATCAAATG 59.230 37.037 0.00 0.00 0.00 2.32
124 125 7.629157 TGATCCTAACCAGTACAATCAAATGA 58.371 34.615 0.00 0.00 0.00 2.57
125 126 8.106462 TGATCCTAACCAGTACAATCAAATGAA 58.894 33.333 0.00 0.00 0.00 2.57
126 127 7.681939 TCCTAACCAGTACAATCAAATGAAC 57.318 36.000 0.00 0.00 0.00 3.18
127 128 7.458397 TCCTAACCAGTACAATCAAATGAACT 58.542 34.615 0.00 0.00 0.00 3.01
128 129 8.598916 TCCTAACCAGTACAATCAAATGAACTA 58.401 33.333 0.00 0.00 0.00 2.24
129 130 8.883731 CCTAACCAGTACAATCAAATGAACTAG 58.116 37.037 0.00 0.00 0.00 2.57
130 131 9.653287 CTAACCAGTACAATCAAATGAACTAGA 57.347 33.333 0.00 0.00 0.00 2.43
131 132 8.918202 AACCAGTACAATCAAATGAACTAGAA 57.082 30.769 0.00 0.00 0.00 2.10
132 133 8.918202 ACCAGTACAATCAAATGAACTAGAAA 57.082 30.769 0.00 0.00 0.00 2.52
133 134 9.520515 ACCAGTACAATCAAATGAACTAGAAAT 57.479 29.630 0.00 0.00 0.00 2.17
137 138 9.490663 GTACAATCAAATGAACTAGAAATTCCG 57.509 33.333 0.00 0.00 0.00 4.30
138 139 8.335532 ACAATCAAATGAACTAGAAATTCCGA 57.664 30.769 0.00 0.00 0.00 4.55
139 140 8.792633 ACAATCAAATGAACTAGAAATTCCGAA 58.207 29.630 0.00 0.00 0.00 4.30
140 141 9.624697 CAATCAAATGAACTAGAAATTCCGAAA 57.375 29.630 0.00 0.00 0.00 3.46
141 142 9.846248 AATCAAATGAACTAGAAATTCCGAAAG 57.154 29.630 0.00 0.00 0.00 2.62
142 143 8.615878 TCAAATGAACTAGAAATTCCGAAAGA 57.384 30.769 0.00 0.00 0.00 2.52
143 144 8.504005 TCAAATGAACTAGAAATTCCGAAAGAC 58.496 33.333 0.00 0.00 0.00 3.01
144 145 7.979444 AATGAACTAGAAATTCCGAAAGACA 57.021 32.000 0.00 0.00 0.00 3.41
145 146 6.780706 TGAACTAGAAATTCCGAAAGACAC 57.219 37.500 0.00 0.00 0.00 3.67
146 147 5.699458 TGAACTAGAAATTCCGAAAGACACC 59.301 40.000 0.00 0.00 0.00 4.16
147 148 4.576879 ACTAGAAATTCCGAAAGACACCC 58.423 43.478 0.00 0.00 0.00 4.61
148 149 3.502123 AGAAATTCCGAAAGACACCCA 57.498 42.857 0.00 0.00 0.00 4.51
149 150 4.034285 AGAAATTCCGAAAGACACCCAT 57.966 40.909 0.00 0.00 0.00 4.00
150 151 4.407365 AGAAATTCCGAAAGACACCCATT 58.593 39.130 0.00 0.00 0.00 3.16
151 152 4.832823 AGAAATTCCGAAAGACACCCATTT 59.167 37.500 0.00 0.00 0.00 2.32
152 153 5.304357 AGAAATTCCGAAAGACACCCATTTT 59.696 36.000 0.00 0.00 0.00 1.82
153 154 5.545063 AATTCCGAAAGACACCCATTTTT 57.455 34.783 0.00 0.00 0.00 1.94
154 155 4.314740 TTCCGAAAGACACCCATTTTTG 57.685 40.909 0.00 0.00 0.00 2.44
155 156 3.556999 TCCGAAAGACACCCATTTTTGA 58.443 40.909 0.00 0.00 0.00 2.69
156 157 4.148838 TCCGAAAGACACCCATTTTTGAT 58.851 39.130 0.00 0.00 0.00 2.57
157 158 4.586841 TCCGAAAGACACCCATTTTTGATT 59.413 37.500 0.00 0.00 0.00 2.57
158 159 5.770663 TCCGAAAGACACCCATTTTTGATTA 59.229 36.000 0.00 0.00 0.00 1.75
159 160 6.435904 TCCGAAAGACACCCATTTTTGATTAT 59.564 34.615 0.00 0.00 0.00 1.28
160 161 7.039363 TCCGAAAGACACCCATTTTTGATTATT 60.039 33.333 0.00 0.00 0.00 1.40
161 162 7.602265 CCGAAAGACACCCATTTTTGATTATTT 59.398 33.333 0.00 0.00 0.00 1.40
162 163 8.987890 CGAAAGACACCCATTTTTGATTATTTT 58.012 29.630 0.00 0.00 0.00 1.82
183 184 6.713731 TTTTTCTTTGGGTCTATCTAGGGT 57.286 37.500 0.00 0.00 0.00 4.34
184 185 7.817910 TTTTTCTTTGGGTCTATCTAGGGTA 57.182 36.000 0.00 0.00 0.00 3.69
185 186 8.401955 TTTTTCTTTGGGTCTATCTAGGGTAT 57.598 34.615 0.00 0.00 0.00 2.73
186 187 9.510062 TTTTTCTTTGGGTCTATCTAGGGTATA 57.490 33.333 0.00 0.00 0.00 1.47
187 188 9.684702 TTTTCTTTGGGTCTATCTAGGGTATAT 57.315 33.333 0.00 0.00 0.00 0.86
188 189 8.896722 TTCTTTGGGTCTATCTAGGGTATATC 57.103 38.462 0.00 0.00 0.00 1.63
189 190 8.245929 TCTTTGGGTCTATCTAGGGTATATCT 57.754 38.462 0.00 0.00 0.00 1.98
190 191 9.360470 TCTTTGGGTCTATCTAGGGTATATCTA 57.640 37.037 0.00 0.00 0.00 1.98
191 192 9.635404 CTTTGGGTCTATCTAGGGTATATCTAG 57.365 40.741 6.71 6.71 36.46 2.43
192 193 8.944898 TTGGGTCTATCTAGGGTATATCTAGA 57.055 38.462 14.26 14.26 44.78 2.43
203 204 5.520751 GGGTATATCTAGATGTGCCCTAGT 58.479 45.833 34.16 4.66 46.31 2.57
204 205 5.958987 GGGTATATCTAGATGTGCCCTAGTT 59.041 44.000 34.16 4.19 46.31 2.24
205 206 7.124052 GGGTATATCTAGATGTGCCCTAGTTA 58.876 42.308 34.16 7.05 46.31 2.24
206 207 7.785506 GGGTATATCTAGATGTGCCCTAGTTAT 59.214 40.741 34.16 12.90 46.31 1.89
207 208 9.203163 GGTATATCTAGATGTGCCCTAGTTATT 57.797 37.037 21.26 0.00 36.06 1.40
209 210 5.215252 TCTAGATGTGCCCTAGTTATTGC 57.785 43.478 0.00 0.00 36.06 3.56
210 211 3.931907 AGATGTGCCCTAGTTATTGCA 57.068 42.857 0.00 0.00 0.00 4.08
215 216 3.364460 TGCCCTAGTTATTGCACATGT 57.636 42.857 0.00 0.00 0.00 3.21
216 217 4.495690 TGCCCTAGTTATTGCACATGTA 57.504 40.909 0.00 0.00 0.00 2.29
217 218 4.849518 TGCCCTAGTTATTGCACATGTAA 58.150 39.130 0.00 0.00 0.00 2.41
218 219 5.257262 TGCCCTAGTTATTGCACATGTAAA 58.743 37.500 0.00 0.00 0.00 2.01
219 220 5.890985 TGCCCTAGTTATTGCACATGTAAAT 59.109 36.000 0.00 4.60 0.00 1.40
220 221 6.183360 TGCCCTAGTTATTGCACATGTAAATG 60.183 38.462 13.59 0.00 0.00 2.32
221 222 6.039270 GCCCTAGTTATTGCACATGTAAATGA 59.961 38.462 13.59 5.38 0.00 2.57
222 223 7.417612 CCCTAGTTATTGCACATGTAAATGAC 58.582 38.462 15.25 15.25 0.00 3.06
223 224 7.283127 CCCTAGTTATTGCACATGTAAATGACT 59.717 37.037 23.11 23.11 35.23 3.41
224 225 8.338259 CCTAGTTATTGCACATGTAAATGACTC 58.662 37.037 23.18 10.09 33.65 3.36
225 226 7.686438 AGTTATTGCACATGTAAATGACTCA 57.314 32.000 18.00 0.00 27.39 3.41
226 227 8.109705 AGTTATTGCACATGTAAATGACTCAA 57.890 30.769 18.00 1.37 27.39 3.02
227 228 8.742777 AGTTATTGCACATGTAAATGACTCAAT 58.257 29.630 18.00 8.18 27.39 2.57
228 229 9.013490 GTTATTGCACATGTAAATGACTCAATC 57.987 33.333 15.55 0.00 0.00 2.67
229 230 6.572167 TTGCACATGTAAATGACTCAATCA 57.428 33.333 0.00 0.00 43.13 2.57
230 231 6.572167 TGCACATGTAAATGACTCAATCAA 57.428 33.333 0.00 0.00 41.93 2.57
231 232 6.979465 TGCACATGTAAATGACTCAATCAAA 58.021 32.000 0.00 0.00 41.93 2.69
232 233 6.862608 TGCACATGTAAATGACTCAATCAAAC 59.137 34.615 0.00 0.00 41.93 2.93
233 234 7.086376 GCACATGTAAATGACTCAATCAAACT 58.914 34.615 0.00 0.00 41.93 2.66
234 235 8.236586 GCACATGTAAATGACTCAATCAAACTA 58.763 33.333 0.00 0.00 41.93 2.24
235 236 9.546909 CACATGTAAATGACTCAATCAAACTAC 57.453 33.333 0.00 0.00 41.93 2.73
236 237 9.283768 ACATGTAAATGACTCAATCAAACTACA 57.716 29.630 0.00 0.00 41.93 2.74
240 241 9.559958 GTAAATGACTCAATCAAACTACAATGG 57.440 33.333 0.00 0.00 41.93 3.16
241 242 8.408043 AAATGACTCAATCAAACTACAATGGA 57.592 30.769 0.00 0.00 41.93 3.41
242 243 8.408043 AATGACTCAATCAAACTACAATGGAA 57.592 30.769 0.00 0.00 41.93 3.53
243 244 7.815840 TGACTCAATCAAACTACAATGGAAA 57.184 32.000 0.00 0.00 33.02 3.13
244 245 8.231692 TGACTCAATCAAACTACAATGGAAAA 57.768 30.769 0.00 0.00 33.02 2.29
245 246 8.859090 TGACTCAATCAAACTACAATGGAAAAT 58.141 29.630 0.00 0.00 33.02 1.82
278 279 6.893020 AAAAGGATTGTCTAGGGTACATCT 57.107 37.500 0.00 0.00 0.00 2.90
279 280 7.989947 AAAAGGATTGTCTAGGGTACATCTA 57.010 36.000 0.00 0.00 0.00 1.98
280 281 7.604657 AAAGGATTGTCTAGGGTACATCTAG 57.395 40.000 13.29 13.29 36.46 2.43
281 282 6.532119 AGGATTGTCTAGGGTACATCTAGA 57.468 41.667 16.45 16.45 40.38 2.43
282 283 6.548321 AGGATTGTCTAGGGTACATCTAGAG 58.452 44.000 19.25 3.32 42.45 2.43
283 284 5.712917 GGATTGTCTAGGGTACATCTAGAGG 59.287 48.000 19.25 2.12 42.45 3.69
284 285 5.728937 TTGTCTAGGGTACATCTAGAGGT 57.271 43.478 15.29 15.29 42.45 3.85
285 286 5.050126 TGTCTAGGGTACATCTAGAGGTG 57.950 47.826 19.91 6.04 42.45 4.00
286 287 4.477581 TGTCTAGGGTACATCTAGAGGTGT 59.522 45.833 19.91 11.87 42.45 4.16
287 288 5.065235 GTCTAGGGTACATCTAGAGGTGTC 58.935 50.000 19.91 12.11 42.45 3.67
288 289 3.315880 AGGGTACATCTAGAGGTGTCC 57.684 52.381 19.91 19.19 0.00 4.02
289 290 2.860041 AGGGTACATCTAGAGGTGTCCT 59.140 50.000 19.91 20.27 36.03 3.85
290 291 4.052922 AGGGTACATCTAGAGGTGTCCTA 58.947 47.826 23.11 2.89 31.76 2.94
291 292 4.105057 AGGGTACATCTAGAGGTGTCCTAG 59.895 50.000 23.11 0.00 31.76 3.02
292 293 4.141205 GGGTACATCTAGAGGTGTCCTAGT 60.141 50.000 19.91 0.00 36.06 2.57
293 294 5.447757 GGTACATCTAGAGGTGTCCTAGTT 58.552 45.833 19.91 0.00 36.06 2.24
294 295 6.410157 GGGTACATCTAGAGGTGTCCTAGTTA 60.410 46.154 19.91 0.00 36.06 2.24
295 296 7.232910 GGTACATCTAGAGGTGTCCTAGTTAT 58.767 42.308 19.91 0.00 36.06 1.89
296 297 7.724951 GGTACATCTAGAGGTGTCCTAGTTATT 59.275 40.741 19.91 0.00 36.06 1.40
297 298 7.589958 ACATCTAGAGGTGTCCTAGTTATTG 57.410 40.000 9.67 0.00 36.06 1.90
298 299 6.041069 ACATCTAGAGGTGTCCTAGTTATTGC 59.959 42.308 9.67 0.00 36.06 3.56
299 300 5.516044 TCTAGAGGTGTCCTAGTTATTGCA 58.484 41.667 0.00 0.00 36.06 4.08
300 301 4.473477 AGAGGTGTCCTAGTTATTGCAC 57.527 45.455 0.00 0.00 31.76 4.57
301 302 3.838317 AGAGGTGTCCTAGTTATTGCACA 59.162 43.478 0.00 0.00 31.76 4.57
302 303 4.471386 AGAGGTGTCCTAGTTATTGCACAT 59.529 41.667 0.00 0.00 31.76 3.21
303 304 4.770795 AGGTGTCCTAGTTATTGCACATC 58.229 43.478 0.00 0.00 28.47 3.06
304 305 4.471386 AGGTGTCCTAGTTATTGCACATCT 59.529 41.667 0.00 0.00 28.47 2.90
305 306 5.661312 AGGTGTCCTAGTTATTGCACATCTA 59.339 40.000 0.00 0.00 28.47 1.98
306 307 6.156256 AGGTGTCCTAGTTATTGCACATCTAA 59.844 38.462 0.00 0.00 28.47 2.10
307 308 6.480320 GGTGTCCTAGTTATTGCACATCTAAG 59.520 42.308 0.00 0.00 0.00 2.18
308 309 7.042335 GTGTCCTAGTTATTGCACATCTAAGT 58.958 38.462 0.00 0.00 0.00 2.24
309 310 7.010552 GTGTCCTAGTTATTGCACATCTAAGTG 59.989 40.741 0.00 0.00 42.37 3.16
310 311 7.093509 TGTCCTAGTTATTGCACATCTAAGTGA 60.094 37.037 0.00 0.00 42.05 3.41
311 312 7.222999 GTCCTAGTTATTGCACATCTAAGTGAC 59.777 40.741 0.00 0.00 42.05 3.67
312 313 7.124298 TCCTAGTTATTGCACATCTAAGTGACT 59.876 37.037 0.00 0.00 42.05 3.41
313 314 7.436673 CCTAGTTATTGCACATCTAAGTGACTC 59.563 40.741 0.00 0.00 42.05 3.36
314 315 6.701340 AGTTATTGCACATCTAAGTGACTCA 58.299 36.000 0.00 0.00 42.05 3.41
315 316 7.161404 AGTTATTGCACATCTAAGTGACTCAA 58.839 34.615 0.00 0.00 42.05 3.02
316 317 7.826252 AGTTATTGCACATCTAAGTGACTCAAT 59.174 33.333 0.00 0.00 42.05 2.57
317 318 6.674694 ATTGCACATCTAAGTGACTCAATC 57.325 37.500 0.00 0.00 42.05 2.67
318 319 5.151297 TGCACATCTAAGTGACTCAATCA 57.849 39.130 0.00 0.00 42.05 2.57
319 320 5.550290 TGCACATCTAAGTGACTCAATCAA 58.450 37.500 0.00 0.00 42.05 2.57
320 321 5.997129 TGCACATCTAAGTGACTCAATCAAA 59.003 36.000 0.00 0.00 42.05 2.69
321 322 6.073058 TGCACATCTAAGTGACTCAATCAAAC 60.073 38.462 0.00 0.00 42.05 2.93
322 323 6.148480 GCACATCTAAGTGACTCAATCAAACT 59.852 38.462 0.00 0.00 42.05 2.66
323 324 7.331934 GCACATCTAAGTGACTCAATCAAACTA 59.668 37.037 0.00 0.00 42.05 2.24
324 325 8.867935 CACATCTAAGTGACTCAATCAAACTAG 58.132 37.037 0.00 0.00 42.05 2.57
325 326 8.807118 ACATCTAAGTGACTCAATCAAACTAGA 58.193 33.333 0.00 0.00 39.72 2.43
326 327 9.645059 CATCTAAGTGACTCAATCAAACTAGAA 57.355 33.333 0.00 0.00 39.72 2.10
328 329 9.698309 TCTAAGTGACTCAATCAAACTAGAAAG 57.302 33.333 0.00 0.00 39.72 2.62
329 330 9.698309 CTAAGTGACTCAATCAAACTAGAAAGA 57.302 33.333 0.00 0.00 39.72 2.52
330 331 8.964476 AAGTGACTCAATCAAACTAGAAAGAA 57.036 30.769 0.00 0.00 39.72 2.52
331 332 8.964476 AGTGACTCAATCAAACTAGAAAGAAA 57.036 30.769 0.00 0.00 39.72 2.52
332 333 9.396022 AGTGACTCAATCAAACTAGAAAGAAAA 57.604 29.630 0.00 0.00 39.72 2.29
349 350 9.981114 AGAAAGAAAAAGACAAAAGACAAAAGA 57.019 25.926 0.00 0.00 0.00 2.52
361 362 9.986833 ACAAAAGACAAAAGAAAATAATTGCAC 57.013 25.926 0.00 0.00 0.00 4.57
362 363 9.146270 CAAAAGACAAAAGAAAATAATTGCACG 57.854 29.630 0.00 0.00 0.00 5.34
363 364 8.641499 AAAGACAAAAGAAAATAATTGCACGA 57.359 26.923 0.00 0.00 0.00 4.35
364 365 8.641499 AAGACAAAAGAAAATAATTGCACGAA 57.359 26.923 0.00 0.00 0.00 3.85
365 366 8.816640 AGACAAAAGAAAATAATTGCACGAAT 57.183 26.923 0.00 0.00 0.00 3.34
366 367 8.915654 AGACAAAAGAAAATAATTGCACGAATC 58.084 29.630 0.00 0.00 0.00 2.52
367 368 7.719538 ACAAAAGAAAATAATTGCACGAATCG 58.280 30.769 0.00 0.00 0.00 3.34
368 369 7.381139 ACAAAAGAAAATAATTGCACGAATCGT 59.619 29.630 0.96 0.96 42.36 3.73
369 370 7.492614 AAAGAAAATAATTGCACGAATCGTC 57.507 32.000 4.88 1.69 38.32 4.20
383 384 4.004455 CGAATCGTCGTGTAAAATCAACG 58.996 43.478 0.00 0.00 42.53 4.10
384 385 4.201419 CGAATCGTCGTGTAAAATCAACGA 60.201 41.667 0.00 0.00 42.53 3.85
386 387 6.290696 CGAATCGTCGTGTAAAATCAACGATA 60.291 38.462 8.41 0.00 45.83 2.92
387 388 7.459394 AATCGTCGTGTAAAATCAACGATAT 57.541 32.000 8.41 0.00 45.83 1.63
388 389 8.564648 AATCGTCGTGTAAAATCAACGATATA 57.435 30.769 8.41 0.00 45.83 0.86
389 390 7.599054 TCGTCGTGTAAAATCAACGATATAG 57.401 36.000 0.12 0.00 34.57 1.31
390 391 7.408910 TCGTCGTGTAAAATCAACGATATAGA 58.591 34.615 0.12 0.00 34.57 1.98
391 392 7.909641 TCGTCGTGTAAAATCAACGATATAGAA 59.090 33.333 0.12 0.00 34.57 2.10
392 393 8.688184 CGTCGTGTAAAATCAACGATATAGAAT 58.312 33.333 0.12 0.00 35.28 2.40
403 404 9.710900 ATCAACGATATAGAATTTAGATGTGCA 57.289 29.630 0.00 0.00 0.00 4.57
404 405 9.541143 TCAACGATATAGAATTTAGATGTGCAA 57.459 29.630 0.00 0.00 0.00 4.08
414 415 9.442047 AGAATTTAGATGTGCAATACCTATAGC 57.558 33.333 0.00 0.00 0.00 2.97
415 416 9.219603 GAATTTAGATGTGCAATACCTATAGCA 57.780 33.333 0.00 0.00 34.10 3.49
424 425 7.724490 TGCAATACCTATAGCACATCTAGAT 57.276 36.000 0.00 0.00 31.05 1.98
425 426 8.823220 TGCAATACCTATAGCACATCTAGATA 57.177 34.615 4.54 0.00 31.05 1.98
426 427 9.426534 TGCAATACCTATAGCACATCTAGATAT 57.573 33.333 4.54 0.00 31.05 1.63
427 428 9.689976 GCAATACCTATAGCACATCTAGATATG 57.310 37.037 6.64 6.64 0.00 1.78
428 429 9.689976 CAATACCTATAGCACATCTAGATATGC 57.310 37.037 25.34 25.34 41.29 3.14
451 452 6.826612 GCTTTAGCAAGACTAGAAGAAAGTG 58.173 40.000 0.00 0.00 41.59 3.16
452 453 6.425417 GCTTTAGCAAGACTAGAAGAAAGTGT 59.575 38.462 0.00 0.00 41.59 3.55
453 454 7.359681 GCTTTAGCAAGACTAGAAGAAAGTGTC 60.360 40.741 0.00 0.00 41.59 3.67
454 455 5.799827 AGCAAGACTAGAAGAAAGTGTCT 57.200 39.130 0.00 0.00 39.35 3.41
455 456 5.537188 AGCAAGACTAGAAGAAAGTGTCTG 58.463 41.667 0.00 0.00 37.93 3.51
456 457 4.151512 GCAAGACTAGAAGAAAGTGTCTGC 59.848 45.833 0.00 0.00 37.93 4.26
457 458 5.292765 CAAGACTAGAAGAAAGTGTCTGCA 58.707 41.667 0.00 0.00 37.93 4.41
458 459 4.877282 AGACTAGAAGAAAGTGTCTGCAC 58.123 43.478 0.00 0.00 45.57 4.57
482 483 7.085797 CGAATCTTCGCATAAAAATCAATGG 57.914 36.000 0.00 0.00 44.26 3.16
483 484 6.345250 CGAATCTTCGCATAAAAATCAATGGC 60.345 38.462 0.00 0.00 44.26 4.40
484 485 5.321959 TCTTCGCATAAAAATCAATGGCA 57.678 34.783 0.00 0.00 0.00 4.92
485 486 5.904941 TCTTCGCATAAAAATCAATGGCAT 58.095 33.333 0.00 0.00 0.00 4.40
486 487 7.036996 TCTTCGCATAAAAATCAATGGCATA 57.963 32.000 0.00 0.00 0.00 3.14
487 488 7.140705 TCTTCGCATAAAAATCAATGGCATAG 58.859 34.615 0.00 0.00 0.00 2.23
488 489 6.631971 TCGCATAAAAATCAATGGCATAGA 57.368 33.333 0.00 0.00 0.00 1.98
489 490 6.671190 TCGCATAAAAATCAATGGCATAGAG 58.329 36.000 0.00 0.00 0.00 2.43
490 491 5.860182 CGCATAAAAATCAATGGCATAGAGG 59.140 40.000 0.00 0.00 0.00 3.69
491 492 6.515531 CGCATAAAAATCAATGGCATAGAGGT 60.516 38.462 0.00 0.00 0.00 3.85
492 493 7.212274 GCATAAAAATCAATGGCATAGAGGTT 58.788 34.615 0.00 0.00 0.00 3.50
493 494 8.359642 GCATAAAAATCAATGGCATAGAGGTTA 58.640 33.333 0.00 0.00 0.00 2.85
494 495 9.903682 CATAAAAATCAATGGCATAGAGGTTAG 57.096 33.333 0.00 0.00 0.00 2.34
495 496 9.866655 ATAAAAATCAATGGCATAGAGGTTAGA 57.133 29.630 0.00 0.00 0.00 2.10
496 497 8.773033 AAAAATCAATGGCATAGAGGTTAGAT 57.227 30.769 0.00 0.00 0.00 1.98
497 498 7.756395 AAATCAATGGCATAGAGGTTAGATG 57.244 36.000 0.00 0.00 0.00 2.90
498 499 5.894298 TCAATGGCATAGAGGTTAGATGT 57.106 39.130 0.00 0.00 0.00 3.06
499 500 5.614308 TCAATGGCATAGAGGTTAGATGTG 58.386 41.667 0.00 0.00 0.00 3.21
500 501 3.475566 TGGCATAGAGGTTAGATGTGC 57.524 47.619 0.00 0.00 0.00 4.57
501 502 2.224042 TGGCATAGAGGTTAGATGTGCG 60.224 50.000 0.00 0.00 32.48 5.34
502 503 2.035961 GGCATAGAGGTTAGATGTGCGA 59.964 50.000 0.00 0.00 32.48 5.10
503 504 3.306364 GGCATAGAGGTTAGATGTGCGAT 60.306 47.826 0.00 0.00 32.48 4.58
504 505 4.082190 GGCATAGAGGTTAGATGTGCGATA 60.082 45.833 0.00 0.00 32.48 2.92
505 506 4.859798 GCATAGAGGTTAGATGTGCGATAC 59.140 45.833 0.00 0.00 0.00 2.24
506 507 5.336055 GCATAGAGGTTAGATGTGCGATACT 60.336 44.000 0.00 0.00 0.00 2.12
507 508 6.682746 CATAGAGGTTAGATGTGCGATACTT 58.317 40.000 0.00 0.00 0.00 2.24
508 509 4.938080 AGAGGTTAGATGTGCGATACTTG 58.062 43.478 0.00 0.00 0.00 3.16
509 510 4.645136 AGAGGTTAGATGTGCGATACTTGA 59.355 41.667 0.00 0.00 0.00 3.02
510 511 4.938080 AGGTTAGATGTGCGATACTTGAG 58.062 43.478 0.00 0.00 0.00 3.02
511 512 4.402793 AGGTTAGATGTGCGATACTTGAGT 59.597 41.667 0.00 0.00 0.00 3.41
512 513 4.504461 GGTTAGATGTGCGATACTTGAGTG 59.496 45.833 0.00 0.00 0.00 3.51
513 514 2.544685 AGATGTGCGATACTTGAGTGC 58.455 47.619 0.00 0.00 0.00 4.40
514 515 2.094026 AGATGTGCGATACTTGAGTGCA 60.094 45.455 0.00 0.00 0.00 4.57
515 516 2.385013 TGTGCGATACTTGAGTGCAT 57.615 45.000 0.00 0.00 37.93 3.96
516 517 2.270923 TGTGCGATACTTGAGTGCATC 58.729 47.619 0.00 0.00 37.93 3.91
517 518 2.094026 TGTGCGATACTTGAGTGCATCT 60.094 45.455 0.00 0.00 37.93 2.90
518 519 3.130340 TGTGCGATACTTGAGTGCATCTA 59.870 43.478 0.00 0.00 37.93 1.98
519 520 3.487574 GTGCGATACTTGAGTGCATCTAC 59.512 47.826 0.00 0.00 37.93 2.59
520 521 3.130340 TGCGATACTTGAGTGCATCTACA 59.870 43.478 0.00 0.00 0.00 2.74
521 522 4.202151 TGCGATACTTGAGTGCATCTACAT 60.202 41.667 0.00 0.00 0.00 2.29
522 523 5.009610 TGCGATACTTGAGTGCATCTACATA 59.990 40.000 0.00 0.00 0.00 2.29
523 524 6.096036 GCGATACTTGAGTGCATCTACATAT 58.904 40.000 0.00 0.00 0.00 1.78
524 525 6.034363 GCGATACTTGAGTGCATCTACATATG 59.966 42.308 0.00 0.00 0.00 1.78
608 609 2.496871 CCATCAATTTGCAGCCCTAACA 59.503 45.455 0.00 0.00 0.00 2.41
609 610 3.055963 CCATCAATTTGCAGCCCTAACAA 60.056 43.478 0.00 0.00 0.00 2.83
610 611 3.940209 TCAATTTGCAGCCCTAACAAG 57.060 42.857 0.00 0.00 0.00 3.16
611 612 2.029110 TCAATTTGCAGCCCTAACAAGC 60.029 45.455 0.00 0.00 0.00 4.01
612 613 0.897621 ATTTGCAGCCCTAACAAGCC 59.102 50.000 0.00 0.00 0.00 4.35
632 633 2.028476 CCATGGACACCGAAGTAGTTCA 60.028 50.000 5.56 0.00 32.36 3.18
653 654 9.216117 AGTTCATGTAATAACCAACTAACTGAC 57.784 33.333 0.00 0.00 0.00 3.51
654 655 8.995220 GTTCATGTAATAACCAACTAACTGACA 58.005 33.333 0.00 0.00 0.00 3.58
655 656 9.562408 TTCATGTAATAACCAACTAACTGACAA 57.438 29.630 0.00 0.00 0.00 3.18
656 657 8.995220 TCATGTAATAACCAACTAACTGACAAC 58.005 33.333 0.00 0.00 0.00 3.32
657 658 8.999431 CATGTAATAACCAACTAACTGACAACT 58.001 33.333 0.00 0.00 0.00 3.16
658 659 8.967664 TGTAATAACCAACTAACTGACAACTT 57.032 30.769 0.00 0.00 0.00 2.66
659 660 9.048446 TGTAATAACCAACTAACTGACAACTTC 57.952 33.333 0.00 0.00 0.00 3.01
660 661 9.048446 GTAATAACCAACTAACTGACAACTTCA 57.952 33.333 0.00 0.00 0.00 3.02
661 662 8.514330 AATAACCAACTAACTGACAACTTCAA 57.486 30.769 0.00 0.00 32.21 2.69
662 663 6.827586 AACCAACTAACTGACAACTTCAAA 57.172 33.333 0.00 0.00 32.21 2.69
663 664 6.827586 ACCAACTAACTGACAACTTCAAAA 57.172 33.333 0.00 0.00 32.21 2.44
664 665 7.222000 ACCAACTAACTGACAACTTCAAAAA 57.778 32.000 0.00 0.00 32.21 1.94
694 695 0.533531 CATGCCCGCAGAGAAGCATA 60.534 55.000 0.00 0.00 40.17 3.14
787 789 1.468520 CCACGTTTCCACCACATCATC 59.531 52.381 0.00 0.00 0.00 2.92
895 905 1.418342 CGGTTGTCAACGCCTATCGG 61.418 60.000 9.57 0.00 43.86 4.18
970 1013 3.259064 TCGCTTTCTCCCAAAGTATTCG 58.741 45.455 0.00 0.00 0.00 3.34
985 1036 4.806330 AGTATTCGTTTCTTCGCAGAGAA 58.194 39.130 0.00 0.00 38.43 2.87
1008 1059 0.031994 GAGAGGCCGAGATGAAGCTC 59.968 60.000 0.00 0.00 0.00 4.09
1254 1305 4.530857 GCCCGCGTGCTACCAGAT 62.531 66.667 6.24 0.00 0.00 2.90
1425 1476 4.357947 ACGAAGGCGCTCGAAGCA 62.358 61.111 23.64 0.00 42.58 3.91
1467 1518 1.308069 TAGTGCGGTCCGTGTACCTC 61.308 60.000 13.94 0.00 37.39 3.85
1629 1688 0.935196 CGTAAATCCAACCGCTAGCC 59.065 55.000 9.66 0.00 0.00 3.93
1656 1715 5.417894 TCTGTACATCAATCGGTTGTAGACT 59.582 40.000 8.54 0.00 33.50 3.24
1661 1720 5.867716 ACATCAATCGGTTGTAGACTTGTAC 59.132 40.000 8.54 0.00 36.69 2.90
1690 1752 0.988832 ACCGTCCAAGGGAATTAGCA 59.011 50.000 0.00 0.00 31.38 3.49
1696 1758 2.647299 TCCAAGGGAATTAGCAAGGTGA 59.353 45.455 0.00 0.00 0.00 4.02
1782 1856 4.156922 CGGTGAGCCATGGTGTAAATAAAA 59.843 41.667 14.67 0.00 34.09 1.52
1854 2095 6.471146 TCTTCTTCTTGCTGCTCTAGAAATT 58.529 36.000 0.00 0.00 36.41 1.82
1866 2107 7.119846 GCTGCTCTAGAAATTAAGTTCCTTTGA 59.880 37.037 11.81 5.08 0.00 2.69
1867 2108 9.171877 CTGCTCTAGAAATTAAGTTCCTTTGAT 57.828 33.333 11.81 0.00 0.00 2.57
1868 2109 8.950210 TGCTCTAGAAATTAAGTTCCTTTGATG 58.050 33.333 11.81 0.00 0.00 3.07
1869 2110 8.951243 GCTCTAGAAATTAAGTTCCTTTGATGT 58.049 33.333 11.81 0.00 0.00 3.06
1907 2149 6.130569 TGAATCATCCATCCATGTTGATGAA 58.869 36.000 12.10 0.00 44.69 2.57
1915 2157 6.547141 TCCATCCATGTTGATGAATTCCTAAC 59.453 38.462 12.10 6.34 43.94 2.34
1923 2165 7.648142 TGTTGATGAATTCCTAACTTCAACAC 58.352 34.615 19.16 6.71 44.96 3.32
1927 2169 4.513692 TGAATTCCTAACTTCAACACCGTG 59.486 41.667 2.27 0.00 0.00 4.94
1954 2196 4.281525 TCGTTTGCTTTAAGTGTGTTCC 57.718 40.909 0.00 0.00 0.00 3.62
1957 2199 5.099575 CGTTTGCTTTAAGTGTGTTCCTTT 58.900 37.500 0.00 0.00 0.00 3.11
1970 2212 6.033966 GTGTGTTCCTTTTGTTGAAGTTAGG 58.966 40.000 0.00 0.00 0.00 2.69
1985 2227 4.227864 AGTTAGGGAAAGCATCTCCAAG 57.772 45.455 1.72 0.00 34.34 3.61
1988 2230 1.988107 AGGGAAAGCATCTCCAAGACA 59.012 47.619 1.72 0.00 34.34 3.41
1992 2234 3.563390 GGAAAGCATCTCCAAGACATAGC 59.437 47.826 0.00 0.00 32.77 2.97
1995 2237 3.741249 AGCATCTCCAAGACATAGCATG 58.259 45.455 0.00 0.00 0.00 4.06
1999 2241 4.613925 TCTCCAAGACATAGCATGATCC 57.386 45.455 0.00 0.00 0.00 3.36
2002 2244 4.648651 TCCAAGACATAGCATGATCCATG 58.351 43.478 0.00 2.77 43.91 3.66
2009 2251 7.966812 AGACATAGCATGATCCATGTAACTAA 58.033 34.615 0.00 0.00 43.10 2.24
2016 2258 6.095440 GCATGATCCATGTAACTAAAAGGTGT 59.905 38.462 0.00 0.00 43.10 4.16
2021 2263 1.794116 TGTAACTAAAAGGTGTCGCGC 59.206 47.619 0.00 0.00 0.00 6.86
2045 2288 4.025401 CCGCGCCGCTCTTTGTTT 62.025 61.111 7.78 0.00 0.00 2.83
2091 2334 2.349590 TCACTTCGATGAGCCAACATG 58.650 47.619 5.16 0.00 0.00 3.21
2093 2336 2.094894 CACTTCGATGAGCCAACATGAC 59.905 50.000 0.00 0.00 0.00 3.06
2102 2345 1.971167 CCAACATGACACACCCCCG 60.971 63.158 0.00 0.00 0.00 5.73
2106 2349 3.717294 ATGACACACCCCCGCTCC 61.717 66.667 0.00 0.00 0.00 4.70
2143 2386 1.092921 AGCGGCGGCAAAAATCGATA 61.093 50.000 19.21 0.00 43.41 2.92
2146 2389 4.437463 GCGGCGGCAAAAATCGATAGAA 62.437 50.000 9.78 0.00 44.75 2.10
2147 2390 5.849635 GCGGCGGCAAAAATCGATAGAAA 62.850 47.826 9.78 0.00 44.75 2.52
2175 2418 1.647084 GCCCTTTCACACACGTGTC 59.353 57.895 20.49 0.00 42.83 3.67
2202 2445 1.148949 ACACATGCAGCTCACCACA 59.851 52.632 0.00 0.00 0.00 4.17
2219 2462 1.514657 CATCCCAACAATGCACGCG 60.515 57.895 3.53 3.53 0.00 6.01
2238 2481 2.223433 GCGTACTAGCACCGACACTTAT 60.223 50.000 0.00 0.00 37.05 1.73
2239 2482 3.002656 GCGTACTAGCACCGACACTTATA 59.997 47.826 0.00 0.00 37.05 0.98
2254 2498 6.237313 ACACTTATAACGCAAAGAACCTTC 57.763 37.500 0.00 0.00 0.00 3.46
2281 2525 0.461870 GTGTCGGCCATGCACATAGA 60.462 55.000 2.24 0.00 33.70 1.98
2287 2531 1.672881 GGCCATGCACATAGACAACTC 59.327 52.381 0.00 0.00 0.00 3.01
2295 2539 2.987149 CACATAGACAACTCACCACGTC 59.013 50.000 0.00 0.00 0.00 4.34
2299 2543 0.179067 GACAACTCACCACGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2302 2546 0.253610 AACTCACCACGTCCCAACAA 59.746 50.000 0.00 0.00 0.00 2.83
2309 2553 1.450669 ACGTCCCAACAACGCACTT 60.451 52.632 0.00 0.00 43.76 3.16
2310 2554 1.010125 CGTCCCAACAACGCACTTG 60.010 57.895 0.00 0.00 32.84 3.16
2311 2555 1.711060 CGTCCCAACAACGCACTTGT 61.711 55.000 0.00 0.00 45.68 3.16
2356 2600 4.284485 CAATGAATCATACACATGCCACG 58.716 43.478 0.00 0.00 31.73 4.94
2383 2627 1.633432 TGCAAGTAGGCACAACCCTAT 59.367 47.619 0.00 0.00 39.53 2.57
2389 2633 1.132500 AGGCACAACCCTATAGAGCC 58.868 55.000 0.00 4.97 40.58 4.70
2400 2644 3.331889 CCCTATAGAGCCAATCACCCATT 59.668 47.826 0.00 0.00 0.00 3.16
2401 2645 4.202609 CCCTATAGAGCCAATCACCCATTT 60.203 45.833 0.00 0.00 0.00 2.32
2414 2658 0.249741 CCCATTTACGGTAGGGCTCG 60.250 60.000 0.00 0.00 33.91 5.03
2443 2687 1.585267 TAGCCGCAATGCACCACAAG 61.585 55.000 5.91 0.00 0.00 3.16
2454 2698 1.453155 CACCACAAGGATCCCTTTCG 58.547 55.000 8.55 0.00 41.69 3.46
2464 2708 2.272471 CCCTTTCGAGGGGGCTTC 59.728 66.667 15.33 0.00 45.34 3.86
2498 2742 6.905578 TCACATTTGAGAATTGACTGACATG 58.094 36.000 0.00 0.00 0.00 3.21
2514 2758 6.594744 ACTGACATGATGGCTATGACAATAA 58.405 36.000 0.00 0.00 31.79 1.40
2522 2766 8.565896 TGATGGCTATGACAATAAATATCACC 57.434 34.615 0.00 0.00 0.00 4.02
2523 2767 8.162746 TGATGGCTATGACAATAAATATCACCA 58.837 33.333 0.00 0.00 0.00 4.17
2557 2802 1.202568 TCCTAGCTCCATGTGAATGCG 60.203 52.381 0.00 0.00 0.00 4.73
2558 2803 0.585357 CTAGCTCCATGTGAATGCGC 59.415 55.000 0.00 0.00 0.00 6.09
2560 2805 0.178767 AGCTCCATGTGAATGCGCTA 59.821 50.000 9.73 0.00 0.00 4.26
2562 2807 1.807755 GCTCCATGTGAATGCGCTAGA 60.808 52.381 9.73 0.00 0.00 2.43
2563 2808 2.554142 CTCCATGTGAATGCGCTAGAA 58.446 47.619 9.73 0.00 0.00 2.10
2564 2809 2.938451 CTCCATGTGAATGCGCTAGAAA 59.062 45.455 9.73 0.00 0.00 2.52
2593 2853 6.041979 AGTGCATTTCTTCCCAAATTACAGTT 59.958 34.615 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.637986 GCCTATGGGTTATCATGAAACAATAAA 58.362 33.333 17.03 4.26 34.45 1.40
43 44 7.782168 TGCCTATGGGTTATCATGAAACAATAA 59.218 33.333 17.03 3.26 34.45 1.40
44 45 7.293828 TGCCTATGGGTTATCATGAAACAATA 58.706 34.615 17.03 13.62 34.45 1.90
45 46 6.135454 TGCCTATGGGTTATCATGAAACAAT 58.865 36.000 17.03 13.35 34.45 2.71
46 47 5.514169 TGCCTATGGGTTATCATGAAACAA 58.486 37.500 17.03 9.05 34.45 2.83
47 48 5.122707 TGCCTATGGGTTATCATGAAACA 57.877 39.130 17.03 6.79 34.45 2.83
48 49 5.565439 GCATGCCTATGGGTTATCATGAAAC 60.565 44.000 6.36 5.90 33.86 2.78
49 50 4.523943 GCATGCCTATGGGTTATCATGAAA 59.476 41.667 6.36 0.00 33.86 2.69
50 51 4.081406 GCATGCCTATGGGTTATCATGAA 58.919 43.478 6.36 0.00 33.86 2.57
51 52 3.074242 TGCATGCCTATGGGTTATCATGA 59.926 43.478 16.68 0.00 33.86 3.07
52 53 3.423749 TGCATGCCTATGGGTTATCATG 58.576 45.455 16.68 8.48 34.59 3.07
53 54 3.812611 TGCATGCCTATGGGTTATCAT 57.187 42.857 16.68 0.00 34.79 2.45
54 55 3.591695 TTGCATGCCTATGGGTTATCA 57.408 42.857 16.68 0.00 34.79 2.15
55 56 4.813027 CATTTGCATGCCTATGGGTTATC 58.187 43.478 16.68 0.00 34.79 1.75
56 57 4.877378 CATTTGCATGCCTATGGGTTAT 57.123 40.909 16.68 0.00 34.79 1.89
68 69 2.917701 TTAGGTCACGCATTTGCATG 57.082 45.000 3.13 0.00 42.21 4.06
69 70 2.754552 ACATTAGGTCACGCATTTGCAT 59.245 40.909 3.13 0.00 42.21 3.96
70 71 2.095314 CACATTAGGTCACGCATTTGCA 60.095 45.455 3.13 0.00 42.21 4.08
71 72 2.095263 ACACATTAGGTCACGCATTTGC 60.095 45.455 0.00 0.00 37.78 3.68
72 73 3.829886 ACACATTAGGTCACGCATTTG 57.170 42.857 0.00 0.00 0.00 2.32
73 74 3.687698 GGTACACATTAGGTCACGCATTT 59.312 43.478 0.00 0.00 0.00 2.32
74 75 3.055385 AGGTACACATTAGGTCACGCATT 60.055 43.478 0.00 0.00 0.00 3.56
75 76 2.500098 AGGTACACATTAGGTCACGCAT 59.500 45.455 0.00 0.00 0.00 4.73
76 77 1.897133 AGGTACACATTAGGTCACGCA 59.103 47.619 0.00 0.00 0.00 5.24
77 78 2.667473 AGGTACACATTAGGTCACGC 57.333 50.000 0.00 0.00 0.00 5.34
78 79 4.082408 TCAGAAGGTACACATTAGGTCACG 60.082 45.833 0.00 0.00 0.00 4.35
79 80 5.401531 TCAGAAGGTACACATTAGGTCAC 57.598 43.478 0.00 0.00 0.00 3.67
80 81 5.128827 GGATCAGAAGGTACACATTAGGTCA 59.871 44.000 0.00 0.00 0.00 4.02
81 82 5.364157 AGGATCAGAAGGTACACATTAGGTC 59.636 44.000 0.00 0.00 0.00 3.85
82 83 5.281314 AGGATCAGAAGGTACACATTAGGT 58.719 41.667 0.00 0.00 0.00 3.08
83 84 5.878406 AGGATCAGAAGGTACACATTAGG 57.122 43.478 0.00 0.00 0.00 2.69
84 85 7.147724 TGGTTAGGATCAGAAGGTACACATTAG 60.148 40.741 0.00 0.00 0.00 1.73
85 86 6.670464 TGGTTAGGATCAGAAGGTACACATTA 59.330 38.462 0.00 0.00 0.00 1.90
86 87 5.487488 TGGTTAGGATCAGAAGGTACACATT 59.513 40.000 0.00 0.00 0.00 2.71
87 88 5.030147 TGGTTAGGATCAGAAGGTACACAT 58.970 41.667 0.00 0.00 0.00 3.21
88 89 4.422057 TGGTTAGGATCAGAAGGTACACA 58.578 43.478 0.00 0.00 0.00 3.72
89 90 4.466726 ACTGGTTAGGATCAGAAGGTACAC 59.533 45.833 0.00 0.00 35.20 2.90
90 91 4.684724 ACTGGTTAGGATCAGAAGGTACA 58.315 43.478 0.00 0.00 35.20 2.90
91 92 5.655532 TGTACTGGTTAGGATCAGAAGGTAC 59.344 44.000 0.00 0.00 35.20 3.34
92 93 5.834460 TGTACTGGTTAGGATCAGAAGGTA 58.166 41.667 0.00 0.00 35.20 3.08
93 94 4.684724 TGTACTGGTTAGGATCAGAAGGT 58.315 43.478 0.00 0.00 35.20 3.50
94 95 5.677319 TTGTACTGGTTAGGATCAGAAGG 57.323 43.478 0.00 0.00 35.20 3.46
95 96 6.878317 TGATTGTACTGGTTAGGATCAGAAG 58.122 40.000 0.00 0.00 35.20 2.85
96 97 6.867519 TGATTGTACTGGTTAGGATCAGAA 57.132 37.500 0.00 0.00 35.20 3.02
97 98 6.867519 TTGATTGTACTGGTTAGGATCAGA 57.132 37.500 0.00 0.00 35.20 3.27
98 99 7.770433 TCATTTGATTGTACTGGTTAGGATCAG 59.230 37.037 0.00 0.00 37.07 2.90
99 100 7.629157 TCATTTGATTGTACTGGTTAGGATCA 58.371 34.615 0.00 0.00 0.00 2.92
100 101 8.398665 GTTCATTTGATTGTACTGGTTAGGATC 58.601 37.037 0.00 0.00 0.00 3.36
101 102 8.109634 AGTTCATTTGATTGTACTGGTTAGGAT 58.890 33.333 0.00 0.00 0.00 3.24
102 103 7.458397 AGTTCATTTGATTGTACTGGTTAGGA 58.542 34.615 0.00 0.00 0.00 2.94
103 104 7.687941 AGTTCATTTGATTGTACTGGTTAGG 57.312 36.000 0.00 0.00 0.00 2.69
104 105 9.653287 TCTAGTTCATTTGATTGTACTGGTTAG 57.347 33.333 0.00 0.00 30.82 2.34
106 107 8.918202 TTCTAGTTCATTTGATTGTACTGGTT 57.082 30.769 0.00 0.00 30.82 3.67
107 108 8.918202 TTTCTAGTTCATTTGATTGTACTGGT 57.082 30.769 0.00 0.00 30.82 4.00
111 112 9.490663 CGGAATTTCTAGTTCATTTGATTGTAC 57.509 33.333 0.00 0.00 0.00 2.90
112 113 9.443323 TCGGAATTTCTAGTTCATTTGATTGTA 57.557 29.630 0.00 0.00 0.00 2.41
113 114 8.335532 TCGGAATTTCTAGTTCATTTGATTGT 57.664 30.769 0.00 0.00 0.00 2.71
114 115 9.624697 TTTCGGAATTTCTAGTTCATTTGATTG 57.375 29.630 0.00 0.00 0.00 2.67
115 116 9.846248 CTTTCGGAATTTCTAGTTCATTTGATT 57.154 29.630 0.00 0.00 0.00 2.57
116 117 9.231297 TCTTTCGGAATTTCTAGTTCATTTGAT 57.769 29.630 0.00 0.00 0.00 2.57
117 118 8.504005 GTCTTTCGGAATTTCTAGTTCATTTGA 58.496 33.333 0.00 0.00 0.00 2.69
118 119 8.289618 TGTCTTTCGGAATTTCTAGTTCATTTG 58.710 33.333 0.00 0.00 0.00 2.32
119 120 8.290325 GTGTCTTTCGGAATTTCTAGTTCATTT 58.710 33.333 0.00 0.00 0.00 2.32
120 121 7.094762 GGTGTCTTTCGGAATTTCTAGTTCATT 60.095 37.037 0.00 0.00 0.00 2.57
121 122 6.371825 GGTGTCTTTCGGAATTTCTAGTTCAT 59.628 38.462 0.00 0.00 0.00 2.57
122 123 5.699458 GGTGTCTTTCGGAATTTCTAGTTCA 59.301 40.000 0.00 0.00 0.00 3.18
123 124 5.121925 GGGTGTCTTTCGGAATTTCTAGTTC 59.878 44.000 0.00 0.00 0.00 3.01
124 125 5.001874 GGGTGTCTTTCGGAATTTCTAGTT 58.998 41.667 0.00 0.00 0.00 2.24
125 126 4.041198 TGGGTGTCTTTCGGAATTTCTAGT 59.959 41.667 0.00 0.00 0.00 2.57
126 127 4.575885 TGGGTGTCTTTCGGAATTTCTAG 58.424 43.478 0.00 0.00 0.00 2.43
127 128 4.627284 TGGGTGTCTTTCGGAATTTCTA 57.373 40.909 0.00 0.00 0.00 2.10
128 129 3.502123 TGGGTGTCTTTCGGAATTTCT 57.498 42.857 0.00 0.00 0.00 2.52
129 130 4.783764 AATGGGTGTCTTTCGGAATTTC 57.216 40.909 0.00 0.00 0.00 2.17
130 131 5.545063 AAAATGGGTGTCTTTCGGAATTT 57.455 34.783 0.00 0.00 0.00 1.82
131 132 5.069781 TCAAAAATGGGTGTCTTTCGGAATT 59.930 36.000 0.00 0.00 0.00 2.17
132 133 4.586841 TCAAAAATGGGTGTCTTTCGGAAT 59.413 37.500 0.00 0.00 0.00 3.01
133 134 3.954904 TCAAAAATGGGTGTCTTTCGGAA 59.045 39.130 0.00 0.00 0.00 4.30
134 135 3.556999 TCAAAAATGGGTGTCTTTCGGA 58.443 40.909 0.00 0.00 0.00 4.55
135 136 4.519540 ATCAAAAATGGGTGTCTTTCGG 57.480 40.909 0.00 0.00 0.00 4.30
136 137 8.532977 AAATAATCAAAAATGGGTGTCTTTCG 57.467 30.769 0.00 0.00 0.00 3.46
160 161 6.713731 ACCCTAGATAGACCCAAAGAAAAA 57.286 37.500 0.00 0.00 0.00 1.94
161 162 9.684702 ATATACCCTAGATAGACCCAAAGAAAA 57.315 33.333 0.00 0.00 0.00 2.29
162 163 9.322769 GATATACCCTAGATAGACCCAAAGAAA 57.677 37.037 0.00 0.00 0.00 2.52
163 164 8.689054 AGATATACCCTAGATAGACCCAAAGAA 58.311 37.037 0.00 0.00 0.00 2.52
164 165 8.245929 AGATATACCCTAGATAGACCCAAAGA 57.754 38.462 0.00 0.00 0.00 2.52
165 166 9.635404 CTAGATATACCCTAGATAGACCCAAAG 57.365 40.741 0.00 0.00 36.58 2.77
166 167 9.360470 TCTAGATATACCCTAGATAGACCCAAA 57.640 37.037 8.76 0.00 38.08 3.28
167 168 8.944898 TCTAGATATACCCTAGATAGACCCAA 57.055 38.462 8.76 0.00 38.08 4.12
168 169 8.950480 CATCTAGATATACCCTAGATAGACCCA 58.050 40.741 18.69 0.00 46.55 4.51
169 170 8.951541 ACATCTAGATATACCCTAGATAGACCC 58.048 40.741 18.69 0.00 46.55 4.46
170 171 9.787435 CACATCTAGATATACCCTAGATAGACC 57.213 40.741 18.69 0.00 46.55 3.85
171 172 9.280174 GCACATCTAGATATACCCTAGATAGAC 57.720 40.741 18.69 11.35 46.55 2.59
172 173 8.441572 GGCACATCTAGATATACCCTAGATAGA 58.558 40.741 18.69 2.98 46.55 1.98
173 174 7.668052 GGGCACATCTAGATATACCCTAGATAG 59.332 44.444 21.08 16.09 46.55 2.08
174 175 7.353863 AGGGCACATCTAGATATACCCTAGATA 59.646 40.741 26.21 2.42 46.55 1.98
176 177 5.496535 AGGGCACATCTAGATATACCCTAGA 59.503 44.000 26.21 13.17 44.66 2.43
177 178 5.772004 AGGGCACATCTAGATATACCCTAG 58.228 45.833 26.21 8.37 44.66 3.02
178 179 5.815723 AGGGCACATCTAGATATACCCTA 57.184 43.478 26.21 0.00 44.66 3.53
179 180 4.701333 AGGGCACATCTAGATATACCCT 57.299 45.455 23.67 23.67 41.69 4.34
180 181 5.520751 ACTAGGGCACATCTAGATATACCC 58.479 45.833 20.92 20.92 38.02 3.69
181 182 8.770010 ATAACTAGGGCACATCTAGATATACC 57.230 38.462 4.54 6.72 38.02 2.73
183 184 8.696374 GCAATAACTAGGGCACATCTAGATATA 58.304 37.037 4.54 0.00 38.02 0.86
184 185 7.180946 TGCAATAACTAGGGCACATCTAGATAT 59.819 37.037 4.54 0.00 38.02 1.63
185 186 6.496911 TGCAATAACTAGGGCACATCTAGATA 59.503 38.462 4.54 0.00 38.02 1.98
186 187 5.307976 TGCAATAACTAGGGCACATCTAGAT 59.692 40.000 0.00 0.00 38.02 1.98
187 188 4.653801 TGCAATAACTAGGGCACATCTAGA 59.346 41.667 0.00 0.00 38.02 2.43
188 189 4.960938 TGCAATAACTAGGGCACATCTAG 58.039 43.478 0.00 0.00 39.88 2.43
190 191 3.931907 TGCAATAACTAGGGCACATCT 57.068 42.857 0.00 0.00 0.00 2.90
195 196 3.364460 ACATGTGCAATAACTAGGGCA 57.636 42.857 0.00 0.00 0.00 5.36
196 197 5.828299 TTTACATGTGCAATAACTAGGGC 57.172 39.130 9.11 0.00 0.00 5.19
197 198 7.283127 AGTCATTTACATGTGCAATAACTAGGG 59.717 37.037 9.11 0.00 0.00 3.53
198 199 8.213518 AGTCATTTACATGTGCAATAACTAGG 57.786 34.615 9.11 0.00 0.00 3.02
199 200 8.882736 TGAGTCATTTACATGTGCAATAACTAG 58.117 33.333 9.11 0.00 0.00 2.57
200 201 8.785329 TGAGTCATTTACATGTGCAATAACTA 57.215 30.769 9.11 0.00 0.00 2.24
201 202 7.686438 TGAGTCATTTACATGTGCAATAACT 57.314 32.000 9.11 8.24 0.00 2.24
202 203 8.915871 ATTGAGTCATTTACATGTGCAATAAC 57.084 30.769 9.11 3.32 31.22 1.89
203 204 8.738106 TGATTGAGTCATTTACATGTGCAATAA 58.262 29.630 9.11 0.00 32.16 1.40
204 205 8.278729 TGATTGAGTCATTTACATGTGCAATA 57.721 30.769 9.11 0.00 32.16 1.90
205 206 7.160547 TGATTGAGTCATTTACATGTGCAAT 57.839 32.000 9.11 3.91 33.39 3.56
206 207 6.572167 TGATTGAGTCATTTACATGTGCAA 57.428 33.333 9.11 1.32 0.00 4.08
207 208 6.572167 TTGATTGAGTCATTTACATGTGCA 57.428 33.333 9.11 0.00 36.54 4.57
208 209 7.086376 AGTTTGATTGAGTCATTTACATGTGC 58.914 34.615 9.11 0.00 36.54 4.57
209 210 9.546909 GTAGTTTGATTGAGTCATTTACATGTG 57.453 33.333 9.11 0.00 36.54 3.21
210 211 9.283768 TGTAGTTTGATTGAGTCATTTACATGT 57.716 29.630 2.69 2.69 36.54 3.21
214 215 9.559958 CCATTGTAGTTTGATTGAGTCATTTAC 57.440 33.333 0.00 0.00 36.54 2.01
215 216 9.513906 TCCATTGTAGTTTGATTGAGTCATTTA 57.486 29.630 0.00 0.00 36.54 1.40
216 217 8.408043 TCCATTGTAGTTTGATTGAGTCATTT 57.592 30.769 0.00 0.00 36.54 2.32
217 218 8.408043 TTCCATTGTAGTTTGATTGAGTCATT 57.592 30.769 0.00 0.00 36.54 2.57
218 219 8.408043 TTTCCATTGTAGTTTGATTGAGTCAT 57.592 30.769 0.00 0.00 36.54 3.06
219 220 7.815840 TTTCCATTGTAGTTTGATTGAGTCA 57.184 32.000 0.00 0.00 34.25 3.41
254 255 7.272144 AGATGTACCCTAGACAATCCTTTTT 57.728 36.000 0.00 0.00 0.00 1.94
255 256 6.893020 AGATGTACCCTAGACAATCCTTTT 57.107 37.500 0.00 0.00 0.00 2.27
256 257 7.363031 TCTAGATGTACCCTAGACAATCCTTT 58.637 38.462 14.52 0.00 38.08 3.11
257 258 6.923670 TCTAGATGTACCCTAGACAATCCTT 58.076 40.000 14.52 0.00 38.08 3.36
258 259 6.468066 CCTCTAGATGTACCCTAGACAATCCT 60.468 46.154 14.52 0.00 38.08 3.24
259 260 5.712917 CCTCTAGATGTACCCTAGACAATCC 59.287 48.000 14.52 0.00 38.08 3.01
260 261 6.207810 CACCTCTAGATGTACCCTAGACAATC 59.792 46.154 14.52 0.00 38.08 2.67
261 262 6.071984 CACCTCTAGATGTACCCTAGACAAT 58.928 44.000 14.52 4.73 38.08 2.71
262 263 5.044328 ACACCTCTAGATGTACCCTAGACAA 60.044 44.000 14.52 0.92 38.08 3.18
263 264 4.477581 ACACCTCTAGATGTACCCTAGACA 59.522 45.833 14.52 0.00 38.08 3.41
264 265 5.051409 ACACCTCTAGATGTACCCTAGAC 57.949 47.826 14.52 0.00 38.08 2.59
265 266 4.104420 GGACACCTCTAGATGTACCCTAGA 59.896 50.000 16.49 16.49 40.00 2.43
266 267 4.105057 AGGACACCTCTAGATGTACCCTAG 59.895 50.000 14.60 11.23 35.97 3.02
267 268 4.052922 AGGACACCTCTAGATGTACCCTA 58.947 47.826 14.60 0.00 28.99 3.53
268 269 2.860041 AGGACACCTCTAGATGTACCCT 59.140 50.000 14.93 13.49 28.99 4.34
269 270 3.315880 AGGACACCTCTAGATGTACCC 57.684 52.381 14.93 12.02 28.99 3.69
270 271 5.051409 ACTAGGACACCTCTAGATGTACC 57.949 47.826 5.26 9.35 38.02 3.34
271 272 8.569641 CAATAACTAGGACACCTCTAGATGTAC 58.430 40.741 0.00 0.46 38.02 2.90
272 273 7.230913 GCAATAACTAGGACACCTCTAGATGTA 59.769 40.741 0.00 0.00 38.02 2.29
273 274 6.041069 GCAATAACTAGGACACCTCTAGATGT 59.959 42.308 0.00 0.00 38.02 3.06
274 275 6.040955 TGCAATAACTAGGACACCTCTAGATG 59.959 42.308 0.00 0.00 38.02 2.90
275 276 6.041069 GTGCAATAACTAGGACACCTCTAGAT 59.959 42.308 0.00 0.00 38.02 1.98
276 277 5.360144 GTGCAATAACTAGGACACCTCTAGA 59.640 44.000 5.29 0.00 38.02 2.43
277 278 5.127194 TGTGCAATAACTAGGACACCTCTAG 59.873 44.000 0.00 0.00 39.88 2.43
278 279 5.020795 TGTGCAATAACTAGGACACCTCTA 58.979 41.667 0.00 0.00 34.61 2.43
279 280 3.838317 TGTGCAATAACTAGGACACCTCT 59.162 43.478 0.00 0.00 34.61 3.69
280 281 4.202245 TGTGCAATAACTAGGACACCTC 57.798 45.455 0.00 0.00 34.61 3.85
281 282 4.471386 AGATGTGCAATAACTAGGACACCT 59.529 41.667 0.00 0.00 38.90 4.00
282 283 4.770795 AGATGTGCAATAACTAGGACACC 58.229 43.478 0.00 0.00 38.90 4.16
283 284 7.010552 CACTTAGATGTGCAATAACTAGGACAC 59.989 40.741 0.00 0.00 38.90 3.67
284 285 7.041721 CACTTAGATGTGCAATAACTAGGACA 58.958 38.462 0.00 0.00 40.35 4.02
285 286 7.222999 GTCACTTAGATGTGCAATAACTAGGAC 59.777 40.741 0.00 0.00 37.81 3.85
286 287 7.124298 AGTCACTTAGATGTGCAATAACTAGGA 59.876 37.037 0.00 0.00 37.81 2.94
287 288 7.268586 AGTCACTTAGATGTGCAATAACTAGG 58.731 38.462 0.00 0.00 37.81 3.02
288 289 7.976175 TGAGTCACTTAGATGTGCAATAACTAG 59.024 37.037 0.00 0.00 37.81 2.57
289 290 7.836842 TGAGTCACTTAGATGTGCAATAACTA 58.163 34.615 0.00 0.00 37.81 2.24
290 291 6.701340 TGAGTCACTTAGATGTGCAATAACT 58.299 36.000 0.00 0.00 37.81 2.24
291 292 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
292 293 7.823799 TGATTGAGTCACTTAGATGTGCAATAA 59.176 33.333 0.00 0.00 37.81 1.40
293 294 7.330262 TGATTGAGTCACTTAGATGTGCAATA 58.670 34.615 0.00 0.00 37.81 1.90
294 295 6.175471 TGATTGAGTCACTTAGATGTGCAAT 58.825 36.000 0.00 0.00 37.81 3.56
295 296 5.550290 TGATTGAGTCACTTAGATGTGCAA 58.450 37.500 0.00 0.00 37.81 4.08
296 297 5.151297 TGATTGAGTCACTTAGATGTGCA 57.849 39.130 0.00 0.00 37.81 4.57
297 298 6.148480 AGTTTGATTGAGTCACTTAGATGTGC 59.852 38.462 0.00 0.00 36.32 4.57
298 299 7.664082 AGTTTGATTGAGTCACTTAGATGTG 57.336 36.000 0.00 0.00 36.32 3.21
299 300 8.807118 TCTAGTTTGATTGAGTCACTTAGATGT 58.193 33.333 0.00 0.00 36.32 3.06
300 301 9.645059 TTCTAGTTTGATTGAGTCACTTAGATG 57.355 33.333 0.00 0.00 36.32 2.90
302 303 9.698309 CTTTCTAGTTTGATTGAGTCACTTAGA 57.302 33.333 0.00 0.00 36.32 2.10
303 304 9.698309 TCTTTCTAGTTTGATTGAGTCACTTAG 57.302 33.333 0.00 0.00 36.32 2.18
305 306 8.964476 TTCTTTCTAGTTTGATTGAGTCACTT 57.036 30.769 0.00 0.00 36.32 3.16
306 307 8.964476 TTTCTTTCTAGTTTGATTGAGTCACT 57.036 30.769 0.00 0.00 36.32 3.41
323 324 9.981114 TCTTTTGTCTTTTGTCTTTTTCTTTCT 57.019 25.926 0.00 0.00 0.00 2.52
335 336 9.986833 GTGCAATTATTTTCTTTTGTCTTTTGT 57.013 25.926 0.00 0.00 0.00 2.83
336 337 9.146270 CGTGCAATTATTTTCTTTTGTCTTTTG 57.854 29.630 0.00 0.00 0.00 2.44
337 338 9.092876 TCGTGCAATTATTTTCTTTTGTCTTTT 57.907 25.926 0.00 0.00 0.00 2.27
338 339 8.641499 TCGTGCAATTATTTTCTTTTGTCTTT 57.359 26.923 0.00 0.00 0.00 2.52
339 340 8.641499 TTCGTGCAATTATTTTCTTTTGTCTT 57.359 26.923 0.00 0.00 0.00 3.01
340 341 8.816640 ATTCGTGCAATTATTTTCTTTTGTCT 57.183 26.923 0.00 0.00 0.00 3.41
341 342 7.887709 CGATTCGTGCAATTATTTTCTTTTGTC 59.112 33.333 0.00 0.00 0.00 3.18
342 343 7.381139 ACGATTCGTGCAATTATTTTCTTTTGT 59.619 29.630 11.56 0.00 39.18 2.83
343 344 7.719538 ACGATTCGTGCAATTATTTTCTTTTG 58.280 30.769 11.56 0.00 39.18 2.44
344 345 7.201232 CGACGATTCGTGCAATTATTTTCTTTT 60.201 33.333 17.75 0.00 41.37 2.27
345 346 6.248420 CGACGATTCGTGCAATTATTTTCTTT 59.752 34.615 17.75 0.00 41.37 2.52
346 347 5.732647 CGACGATTCGTGCAATTATTTTCTT 59.267 36.000 17.75 0.00 41.37 2.52
347 348 5.255596 CGACGATTCGTGCAATTATTTTCT 58.744 37.500 17.75 0.00 41.37 2.52
348 349 5.510949 CGACGATTCGTGCAATTATTTTC 57.489 39.130 17.75 0.00 41.37 2.29
362 363 5.181235 TCGTTGATTTTACACGACGATTC 57.819 39.130 0.00 0.00 44.41 2.52
366 367 7.599054 TCTATATCGTTGATTTTACACGACG 57.401 36.000 0.00 0.00 42.85 5.12
377 378 9.710900 TGCACATCTAAATTCTATATCGTTGAT 57.289 29.630 0.00 0.00 0.00 2.57
378 379 9.541143 TTGCACATCTAAATTCTATATCGTTGA 57.459 29.630 0.00 0.00 0.00 3.18
388 389 9.442047 GCTATAGGTATTGCACATCTAAATTCT 57.558 33.333 1.04 0.00 35.12 2.40
389 390 9.219603 TGCTATAGGTATTGCACATCTAAATTC 57.780 33.333 1.04 0.00 38.99 2.17
400 401 7.724490 ATCTAGATGTGCTATAGGTATTGCA 57.276 36.000 3.89 2.49 40.96 4.08
401 402 9.689976 CATATCTAGATGTGCTATAGGTATTGC 57.310 37.037 15.51 0.00 35.48 3.56
427 428 6.425417 ACACTTTCTTCTAGTCTTGCTAAAGC 59.575 38.462 0.00 0.00 42.50 3.51
428 429 7.870445 AGACACTTTCTTCTAGTCTTGCTAAAG 59.130 37.037 0.00 0.00 36.21 1.85
429 430 7.653713 CAGACACTTTCTTCTAGTCTTGCTAAA 59.346 37.037 0.00 0.00 37.45 1.85
430 431 7.148641 CAGACACTTTCTTCTAGTCTTGCTAA 58.851 38.462 0.00 0.00 37.45 3.09
431 432 6.682746 CAGACACTTTCTTCTAGTCTTGCTA 58.317 40.000 0.00 0.00 37.45 3.49
432 433 5.537188 CAGACACTTTCTTCTAGTCTTGCT 58.463 41.667 0.00 0.00 37.45 3.91
433 434 4.151512 GCAGACACTTTCTTCTAGTCTTGC 59.848 45.833 0.00 0.00 37.45 4.01
434 435 5.176590 GTGCAGACACTTTCTTCTAGTCTTG 59.823 44.000 0.00 0.00 43.85 3.02
435 436 5.293560 GTGCAGACACTTTCTTCTAGTCTT 58.706 41.667 0.00 0.00 43.85 3.01
436 437 4.557695 CGTGCAGACACTTTCTTCTAGTCT 60.558 45.833 0.00 0.00 45.10 3.24
437 438 3.670991 CGTGCAGACACTTTCTTCTAGTC 59.329 47.826 0.00 0.00 45.10 2.59
438 439 3.318275 TCGTGCAGACACTTTCTTCTAGT 59.682 43.478 0.00 0.00 45.10 2.57
439 440 3.902150 TCGTGCAGACACTTTCTTCTAG 58.098 45.455 0.00 0.00 45.10 2.43
440 441 4.316205 TTCGTGCAGACACTTTCTTCTA 57.684 40.909 0.00 0.00 45.10 2.10
441 442 2.890808 TCGTGCAGACACTTTCTTCT 57.109 45.000 0.00 0.00 45.10 2.85
442 443 3.743396 AGATTCGTGCAGACACTTTCTTC 59.257 43.478 0.00 0.00 45.10 2.87
443 444 3.733337 AGATTCGTGCAGACACTTTCTT 58.267 40.909 0.00 0.00 45.10 2.52
444 445 3.393089 AGATTCGTGCAGACACTTTCT 57.607 42.857 0.00 0.00 45.10 2.52
445 446 3.422343 CGAAGATTCGTGCAGACACTTTC 60.422 47.826 6.81 0.00 45.10 2.62
446 447 2.476619 CGAAGATTCGTGCAGACACTTT 59.523 45.455 6.81 0.00 45.10 2.66
447 448 2.061773 CGAAGATTCGTGCAGACACTT 58.938 47.619 6.81 0.00 45.10 3.16
448 449 1.702886 CGAAGATTCGTGCAGACACT 58.297 50.000 6.81 0.00 45.10 3.55
459 460 6.476380 TGCCATTGATTTTTATGCGAAGATTC 59.524 34.615 0.00 0.00 0.00 2.52
460 461 6.339730 TGCCATTGATTTTTATGCGAAGATT 58.660 32.000 0.00 0.00 0.00 2.40
461 462 5.904941 TGCCATTGATTTTTATGCGAAGAT 58.095 33.333 0.00 0.00 0.00 2.40
462 463 5.321959 TGCCATTGATTTTTATGCGAAGA 57.678 34.783 0.00 0.00 0.00 2.87
463 464 7.140705 TCTATGCCATTGATTTTTATGCGAAG 58.859 34.615 0.00 0.00 0.00 3.79
464 465 7.036996 TCTATGCCATTGATTTTTATGCGAA 57.963 32.000 0.00 0.00 0.00 4.70
465 466 6.294120 CCTCTATGCCATTGATTTTTATGCGA 60.294 38.462 0.00 0.00 0.00 5.10
466 467 5.860182 CCTCTATGCCATTGATTTTTATGCG 59.140 40.000 0.00 0.00 0.00 4.73
467 468 6.752168 ACCTCTATGCCATTGATTTTTATGC 58.248 36.000 0.00 0.00 0.00 3.14
468 469 9.903682 CTAACCTCTATGCCATTGATTTTTATG 57.096 33.333 0.00 0.00 0.00 1.90
469 470 9.866655 TCTAACCTCTATGCCATTGATTTTTAT 57.133 29.630 0.00 0.00 0.00 1.40
470 471 9.866655 ATCTAACCTCTATGCCATTGATTTTTA 57.133 29.630 0.00 0.00 0.00 1.52
471 472 8.636213 CATCTAACCTCTATGCCATTGATTTTT 58.364 33.333 0.00 0.00 0.00 1.94
472 473 7.781693 ACATCTAACCTCTATGCCATTGATTTT 59.218 33.333 0.00 0.00 0.00 1.82
473 474 7.230108 CACATCTAACCTCTATGCCATTGATTT 59.770 37.037 0.00 0.00 0.00 2.17
474 475 6.713903 CACATCTAACCTCTATGCCATTGATT 59.286 38.462 0.00 0.00 0.00 2.57
475 476 6.236409 CACATCTAACCTCTATGCCATTGAT 58.764 40.000 0.00 0.00 0.00 2.57
476 477 5.614308 CACATCTAACCTCTATGCCATTGA 58.386 41.667 0.00 0.00 0.00 2.57
477 478 4.214971 GCACATCTAACCTCTATGCCATTG 59.785 45.833 0.00 0.00 0.00 2.82
478 479 4.392940 GCACATCTAACCTCTATGCCATT 58.607 43.478 0.00 0.00 0.00 3.16
479 480 3.555795 CGCACATCTAACCTCTATGCCAT 60.556 47.826 0.00 0.00 0.00 4.40
480 481 2.224042 CGCACATCTAACCTCTATGCCA 60.224 50.000 0.00 0.00 0.00 4.92
481 482 2.035961 TCGCACATCTAACCTCTATGCC 59.964 50.000 0.00 0.00 0.00 4.40
482 483 3.371102 TCGCACATCTAACCTCTATGC 57.629 47.619 0.00 0.00 0.00 3.14
483 484 6.260870 AGTATCGCACATCTAACCTCTATG 57.739 41.667 0.00 0.00 0.00 2.23
484 485 6.490381 TCAAGTATCGCACATCTAACCTCTAT 59.510 38.462 0.00 0.00 0.00 1.98
485 486 5.826208 TCAAGTATCGCACATCTAACCTCTA 59.174 40.000 0.00 0.00 0.00 2.43
486 487 4.645136 TCAAGTATCGCACATCTAACCTCT 59.355 41.667 0.00 0.00 0.00 3.69
487 488 4.933330 TCAAGTATCGCACATCTAACCTC 58.067 43.478 0.00 0.00 0.00 3.85
488 489 4.402793 ACTCAAGTATCGCACATCTAACCT 59.597 41.667 0.00 0.00 0.00 3.50
489 490 4.504461 CACTCAAGTATCGCACATCTAACC 59.496 45.833 0.00 0.00 0.00 2.85
490 491 4.026475 GCACTCAAGTATCGCACATCTAAC 60.026 45.833 0.00 0.00 0.00 2.34
491 492 4.112634 GCACTCAAGTATCGCACATCTAA 58.887 43.478 0.00 0.00 0.00 2.10
492 493 3.130340 TGCACTCAAGTATCGCACATCTA 59.870 43.478 0.00 0.00 0.00 1.98
493 494 2.094026 TGCACTCAAGTATCGCACATCT 60.094 45.455 0.00 0.00 0.00 2.90
494 495 2.270923 TGCACTCAAGTATCGCACATC 58.729 47.619 0.00 0.00 0.00 3.06
495 496 2.385013 TGCACTCAAGTATCGCACAT 57.615 45.000 0.00 0.00 0.00 3.21
496 497 2.094026 AGATGCACTCAAGTATCGCACA 60.094 45.455 0.00 0.00 36.00 4.57
497 498 2.544685 AGATGCACTCAAGTATCGCAC 58.455 47.619 0.00 0.00 36.00 5.34
498 499 2.967599 AGATGCACTCAAGTATCGCA 57.032 45.000 0.00 0.00 36.00 5.10
499 500 3.706698 TGTAGATGCACTCAAGTATCGC 58.293 45.455 0.00 0.00 36.00 4.58
500 501 7.503549 CATATGTAGATGCACTCAAGTATCG 57.496 40.000 0.00 0.00 36.00 2.92
542 543 8.139350 GCCCTAGCTAGTTTAAAGAAAAACAAA 58.861 33.333 19.31 0.00 37.64 2.83
543 544 7.255695 GGCCCTAGCTAGTTTAAAGAAAAACAA 60.256 37.037 19.31 0.00 39.20 2.83
544 545 6.208007 GGCCCTAGCTAGTTTAAAGAAAAACA 59.792 38.462 19.31 0.00 39.20 2.83
545 546 6.208007 TGGCCCTAGCTAGTTTAAAGAAAAAC 59.792 38.462 19.31 0.00 38.11 2.43
546 547 6.308566 TGGCCCTAGCTAGTTTAAAGAAAAA 58.691 36.000 19.31 0.00 39.73 1.94
547 548 5.883180 TGGCCCTAGCTAGTTTAAAGAAAA 58.117 37.500 19.31 0.00 39.73 2.29
548 549 5.508280 TGGCCCTAGCTAGTTTAAAGAAA 57.492 39.130 19.31 0.00 39.73 2.52
549 550 5.508280 TTGGCCCTAGCTAGTTTAAAGAA 57.492 39.130 19.31 0.68 39.73 2.52
550 551 5.497474 CTTTGGCCCTAGCTAGTTTAAAGA 58.503 41.667 19.31 0.00 39.73 2.52
551 552 4.640647 CCTTTGGCCCTAGCTAGTTTAAAG 59.359 45.833 19.31 19.47 39.73 1.85
552 553 4.569015 CCCTTTGGCCCTAGCTAGTTTAAA 60.569 45.833 19.31 12.83 39.73 1.52
553 554 3.053917 CCCTTTGGCCCTAGCTAGTTTAA 60.054 47.826 19.31 6.46 39.73 1.52
554 555 2.508300 CCCTTTGGCCCTAGCTAGTTTA 59.492 50.000 19.31 0.46 39.73 2.01
555 556 1.285078 CCCTTTGGCCCTAGCTAGTTT 59.715 52.381 19.31 0.00 39.73 2.66
556 557 0.919710 CCCTTTGGCCCTAGCTAGTT 59.080 55.000 19.31 0.00 39.73 2.24
557 558 0.253207 ACCCTTTGGCCCTAGCTAGT 60.253 55.000 19.31 0.00 39.73 2.57
558 559 1.416772 GTACCCTTTGGCCCTAGCTAG 59.583 57.143 14.20 14.20 39.73 3.42
608 609 0.981183 TACTTCGGTGTCCATGGCTT 59.019 50.000 6.96 0.00 0.00 4.35
609 610 0.537188 CTACTTCGGTGTCCATGGCT 59.463 55.000 6.96 0.00 0.00 4.75
610 611 0.249398 ACTACTTCGGTGTCCATGGC 59.751 55.000 6.96 2.72 0.00 4.40
611 612 2.028476 TGAACTACTTCGGTGTCCATGG 60.028 50.000 4.97 4.97 0.00 3.66
612 613 3.313012 TGAACTACTTCGGTGTCCATG 57.687 47.619 0.00 0.00 0.00 3.66
632 633 9.569122 AAGTTGTCAGTTAGTTGGTTATTACAT 57.431 29.630 0.00 0.00 0.00 2.29
666 667 0.314935 CTGCGGGCATGTCAGTTTTT 59.685 50.000 0.00 0.00 0.00 1.94
667 668 0.537143 TCTGCGGGCATGTCAGTTTT 60.537 50.000 0.00 0.00 0.00 2.43
668 669 0.957395 CTCTGCGGGCATGTCAGTTT 60.957 55.000 0.00 0.00 0.00 2.66
671 672 1.078918 TTCTCTGCGGGCATGTCAG 60.079 57.895 0.00 0.00 0.00 3.51
675 676 0.533531 TATGCTTCTCTGCGGGCATG 60.534 55.000 14.93 0.00 43.84 4.06
694 695 4.080015 TCGGGTCACTAAATTTCCATCCAT 60.080 41.667 0.00 0.00 0.00 3.41
805 807 0.027848 ACGTTTTGGGTTTGCGTACG 59.972 50.000 11.84 11.84 33.85 3.67
806 808 1.202166 ACACGTTTTGGGTTTGCGTAC 60.202 47.619 0.00 0.00 34.27 3.67
807 809 1.093159 ACACGTTTTGGGTTTGCGTA 58.907 45.000 0.00 0.00 34.27 4.42
808 810 0.456995 CACACGTTTTGGGTTTGCGT 60.457 50.000 0.00 0.00 36.13 5.24
889 891 6.207025 GGCAGGTATATATGTACTCCCGATAG 59.793 46.154 9.22 0.00 0.00 2.08
895 905 4.677250 GCACGGCAGGTATATATGTACTCC 60.677 50.000 9.22 7.49 0.00 3.85
970 1013 5.333721 CCTCTCTTTTTCTCTGCGAAGAAAC 60.334 44.000 11.61 0.00 43.18 2.78
985 1036 2.679349 GCTTCATCTCGGCCTCTCTTTT 60.679 50.000 0.00 0.00 0.00 2.27
1248 1299 1.673808 GGTCCGCGTCCTTATCTGGT 61.674 60.000 4.92 0.00 0.00 4.00
1251 1302 2.487532 CCGGTCCGCGTCCTTATCT 61.488 63.158 5.50 0.00 0.00 1.98
1446 1497 1.589716 GGTACACGGACCGCACTACT 61.590 60.000 15.39 0.00 0.00 2.57
1629 1688 5.862924 ACAACCGATTGATGTACAGAAAG 57.137 39.130 0.00 0.00 39.30 2.62
1866 2107 9.445878 GGATGATTCAGTATCACATAATCACAT 57.554 33.333 0.00 0.00 45.71 3.21
1867 2108 8.431222 TGGATGATTCAGTATCACATAATCACA 58.569 33.333 0.00 0.00 45.71 3.58
1868 2109 8.837788 TGGATGATTCAGTATCACATAATCAC 57.162 34.615 0.00 0.00 45.71 3.06
1869 2110 9.662947 GATGGATGATTCAGTATCACATAATCA 57.337 33.333 0.00 0.00 45.71 2.57
1870 2111 9.107177 GGATGGATGATTCAGTATCACATAATC 57.893 37.037 0.00 0.00 45.71 1.75
1871 2112 8.608598 TGGATGGATGATTCAGTATCACATAAT 58.391 33.333 0.00 0.00 45.71 1.28
1872 2113 7.976712 TGGATGGATGATTCAGTATCACATAA 58.023 34.615 0.00 0.00 45.71 1.90
1873 2114 7.557875 TGGATGGATGATTCAGTATCACATA 57.442 36.000 0.00 0.00 45.71 2.29
1907 2149 3.181448 ACCACGGTGTTGAAGTTAGGAAT 60.181 43.478 7.45 0.00 0.00 3.01
1915 2157 1.194547 CGATGAACCACGGTGTTGAAG 59.805 52.381 7.45 0.00 0.00 3.02
1923 2165 0.591170 AAGCAAACGATGAACCACGG 59.409 50.000 0.00 0.00 0.00 4.94
1927 2169 4.675114 CACACTTAAAGCAAACGATGAACC 59.325 41.667 0.00 0.00 0.00 3.62
1954 2196 5.901552 TGCTTTCCCTAACTTCAACAAAAG 58.098 37.500 0.00 0.00 0.00 2.27
1957 2199 5.385198 AGATGCTTTCCCTAACTTCAACAA 58.615 37.500 0.00 0.00 0.00 2.83
1970 2212 3.563390 GCTATGTCTTGGAGATGCTTTCC 59.437 47.826 0.00 0.00 35.20 3.13
1985 2227 8.607441 TTTAGTTACATGGATCATGCTATGTC 57.393 34.615 5.76 0.00 44.80 3.06
1988 2230 8.220559 ACCTTTTAGTTACATGGATCATGCTAT 58.779 33.333 7.70 0.00 44.80 2.97
1992 2234 7.465916 CGACACCTTTTAGTTACATGGATCATG 60.466 40.741 6.37 6.37 46.18 3.07
1995 2237 5.220605 GCGACACCTTTTAGTTACATGGATC 60.221 44.000 0.00 0.00 0.00 3.36
1999 2241 3.723835 GCGCGACACCTTTTAGTTACATG 60.724 47.826 12.10 0.00 0.00 3.21
2002 2244 1.201736 CGCGCGACACCTTTTAGTTAC 60.202 52.381 28.94 0.00 0.00 2.50
2009 2251 3.276846 AAAGCGCGCGACACCTTT 61.277 55.556 37.18 28.02 0.00 3.11
2028 2270 2.177654 TAAAACAAAGAGCGGCGCGG 62.178 55.000 27.59 16.55 0.00 6.46
2060 2303 0.677098 TCGAAGTGAGAGGTCCCTCG 60.677 60.000 7.67 0.00 46.90 4.63
2061 2304 1.407258 CATCGAAGTGAGAGGTCCCTC 59.593 57.143 5.13 5.13 43.03 4.30
2064 2307 1.202359 GCTCATCGAAGTGAGAGGTCC 60.202 57.143 18.10 0.00 46.77 4.46
2091 2334 4.699522 GTGGAGCGGGGGTGTGTC 62.700 72.222 0.00 0.00 0.00 3.67
2102 2345 4.678743 GGGTTGGTGGGGTGGAGC 62.679 72.222 0.00 0.00 0.00 4.70
2106 2349 2.520741 GTGTGGGTTGGTGGGGTG 60.521 66.667 0.00 0.00 0.00 4.61
2143 2386 4.660938 GGGCCGGTGCTGGTTTCT 62.661 66.667 1.90 0.00 37.74 2.52
2146 2389 4.218686 AAAGGGCCGGTGCTGGTT 62.219 61.111 1.90 0.00 37.74 3.67
2147 2390 4.660938 GAAAGGGCCGGTGCTGGT 62.661 66.667 1.90 0.00 37.74 4.00
2148 2391 4.659172 TGAAAGGGCCGGTGCTGG 62.659 66.667 1.90 0.00 37.74 4.85
2151 2394 3.670377 GTGTGAAAGGGCCGGTGC 61.670 66.667 1.90 0.00 0.00 5.01
2193 2436 1.203052 CATTGTTGGGATGTGGTGAGC 59.797 52.381 0.00 0.00 0.00 4.26
2194 2437 1.203052 GCATTGTTGGGATGTGGTGAG 59.797 52.381 0.00 0.00 0.00 3.51
2202 2445 0.675208 TACGCGTGCATTGTTGGGAT 60.675 50.000 24.59 0.00 0.00 3.85
2219 2462 4.966366 CGTTATAAGTGTCGGTGCTAGTAC 59.034 45.833 1.77 1.77 0.00 2.73
2238 2481 2.614983 GTGTGGAAGGTTCTTTGCGTTA 59.385 45.455 0.00 0.00 0.00 3.18
2239 2482 1.404035 GTGTGGAAGGTTCTTTGCGTT 59.596 47.619 0.00 0.00 0.00 4.84
2281 2525 0.463116 GTTGGGACGTGGTGAGTTGT 60.463 55.000 0.00 0.00 0.00 3.32
2287 2531 3.018973 CGTTGTTGGGACGTGGTG 58.981 61.111 0.00 0.00 35.88 4.17
2302 2546 0.874390 CAATGCTGGTACAAGTGCGT 59.126 50.000 0.00 0.00 38.70 5.24
2311 2555 1.585267 CTTGCGTGCCAATGCTGGTA 61.585 55.000 0.00 0.00 45.53 3.25
2327 2571 5.220557 TGTGTATGATTCATTGCGTCTTG 57.779 39.130 4.14 0.00 0.00 3.02
2340 2584 3.474942 TGCGTGGCATGTGTATGAT 57.525 47.368 8.75 0.00 36.36 2.45
2364 2608 2.420058 ATAGGGTTGTGCCTACTTGC 57.580 50.000 0.00 0.00 37.43 4.01
2383 2627 3.433031 CCGTAAATGGGTGATTGGCTCTA 60.433 47.826 0.00 0.00 0.00 2.43
2389 2633 3.211045 CCCTACCGTAAATGGGTGATTG 58.789 50.000 0.00 0.00 38.50 2.67
2400 2644 3.520862 CGCCGAGCCCTACCGTAA 61.521 66.667 0.00 0.00 0.00 3.18
2428 2672 0.179156 GATCCTTGTGGTGCATTGCG 60.179 55.000 3.84 0.00 34.23 4.85
2429 2673 0.174162 GGATCCTTGTGGTGCATTGC 59.826 55.000 3.84 0.46 34.23 3.56
2461 2705 5.578336 TCTCAAATGTGATTCAGCTACGAAG 59.422 40.000 0.00 0.00 31.85 3.79
2464 2708 5.784750 TTCTCAAATGTGATTCAGCTACG 57.215 39.130 0.00 0.00 31.85 3.51
2469 2713 7.749570 GTCAGTCAATTCTCAAATGTGATTCAG 59.250 37.037 0.00 0.00 31.85 3.02
2498 2742 8.565896 TGGTGATATTTATTGTCATAGCCATC 57.434 34.615 0.00 0.00 0.00 3.51
2522 2766 5.998363 GGAGCTAGGAAGGTAACCAATTATG 59.002 44.000 0.00 0.00 32.30 1.90
2523 2767 5.670361 TGGAGCTAGGAAGGTAACCAATTAT 59.330 40.000 0.00 0.00 32.30 1.28
2531 2775 3.719871 TCACATGGAGCTAGGAAGGTAA 58.280 45.455 0.00 0.00 32.30 2.85
2562 2807 8.922931 AATTTGGGAAGAAATGCACTTAATTT 57.077 26.923 0.00 0.00 0.00 1.82
2563 2808 9.435688 GTAATTTGGGAAGAAATGCACTTAATT 57.564 29.630 0.00 0.00 0.00 1.40
2564 2809 8.592809 TGTAATTTGGGAAGAAATGCACTTAAT 58.407 29.630 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.