Multiple sequence alignment - TraesCS5B01G323300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G323300 chr5B 100.000 5933 0 0 1 5933 507877558 507871626 0.000000e+00 10957.0
1 TraesCS5B01G323300 chr5A 89.928 3326 198 68 2655 5930 535139066 535135828 0.000000e+00 4159.0
2 TraesCS5B01G323300 chr5A 87.982 882 48 13 1805 2651 535140090 535139232 0.000000e+00 989.0
3 TraesCS5B01G323300 chr5A 93.231 325 9 2 1058 1369 535140934 535140610 3.240000e-127 466.0
4 TraesCS5B01G323300 chr5A 98.214 56 1 0 937 992 535141019 535140964 1.360000e-16 99.0
5 TraesCS5B01G323300 chr5D 93.073 2122 101 24 2818 4927 421534399 421532312 0.000000e+00 3062.0
6 TraesCS5B01G323300 chr5D 89.737 1101 82 12 1566 2642 421535846 421534753 0.000000e+00 1378.0
7 TraesCS5B01G323300 chr5D 84.897 874 69 36 634 1469 421536906 421536058 0.000000e+00 824.0
8 TraesCS5B01G323300 chr5D 86.385 426 40 11 5516 5933 421531249 421530834 3.260000e-122 449.0
9 TraesCS5B01G323300 chr5D 85.323 402 26 13 4926 5313 421531789 421531407 9.330000e-103 385.0
10 TraesCS5B01G323300 chr5D 92.771 166 12 0 5336 5501 53583073 53583238 2.140000e-59 241.0
11 TraesCS5B01G323300 chr5D 90.625 96 5 1 1470 1561 421535985 421535890 2.250000e-24 124.0
12 TraesCS5B01G323300 chr5D 87.719 57 7 0 5820 5876 338648753 338648697 3.840000e-07 67.6
13 TraesCS5B01G323300 chr6D 83.099 568 63 8 58 596 146943145 146943708 2.490000e-133 486.0
14 TraesCS5B01G323300 chr3D 84.362 486 54 9 56 523 380173503 380173984 1.950000e-124 457.0
15 TraesCS5B01G323300 chr3D 81.786 571 70 10 56 596 586293605 586293039 1.170000e-121 448.0
16 TraesCS5B01G323300 chr3D 93.827 162 10 0 5343 5504 536881642 536881481 1.650000e-60 244.0
17 TraesCS5B01G323300 chr4D 82.364 550 70 15 61 595 51848920 51849457 2.520000e-123 453.0
18 TraesCS5B01G323300 chr4D 93.750 160 10 0 5343 5502 136489686 136489527 2.140000e-59 241.0
19 TraesCS5B01G323300 chr7A 81.675 573 69 18 56 596 450975087 450975655 1.520000e-120 444.0
20 TraesCS5B01G323300 chr3B 83.814 451 65 6 61 509 713972941 713972497 7.110000e-114 422.0
21 TraesCS5B01G323300 chr3B 83.011 465 69 9 61 523 713992888 713992432 4.280000e-111 412.0
22 TraesCS5B01G323300 chr1D 82.403 466 70 11 61 523 424734107 424734563 4.310000e-106 396.0
23 TraesCS5B01G323300 chr1D 93.252 163 11 0 5343 5505 463382063 463381901 2.140000e-59 241.0
24 TraesCS5B01G323300 chr3A 82.051 468 72 10 61 523 676921619 676921159 7.210000e-104 388.0
25 TraesCS5B01G323300 chr1B 94.340 159 9 0 5343 5501 647530527 647530685 1.650000e-60 244.0
26 TraesCS5B01G323300 chr2D 93.789 161 10 0 5343 5503 87407522 87407362 5.940000e-60 243.0
27 TraesCS5B01G323300 chr2D 93.711 159 10 0 5343 5501 362930966 362930808 7.680000e-59 239.0
28 TraesCS5B01G323300 chr4A 93.210 162 11 0 5343 5504 517406629 517406468 7.680000e-59 239.0
29 TraesCS5B01G323300 chr4A 83.000 200 13 7 1008 1198 697834914 697834727 1.710000e-35 161.0
30 TraesCS5B01G323300 chr2B 81.000 200 17 6 1008 1198 83716064 83715877 8.020000e-29 139.0
31 TraesCS5B01G323300 chr2B 80.500 200 18 7 1008 1198 608561444 608561631 3.730000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G323300 chr5B 507871626 507877558 5932 True 10957.00 10957 100.00000 1 5933 1 chr5B.!!$R1 5932
1 TraesCS5B01G323300 chr5A 535135828 535141019 5191 True 1428.25 4159 92.33875 937 5930 4 chr5A.!!$R1 4993
2 TraesCS5B01G323300 chr5D 421530834 421536906 6072 True 1037.00 3062 88.34000 634 5933 6 chr5D.!!$R2 5299
3 TraesCS5B01G323300 chr6D 146943145 146943708 563 False 486.00 486 83.09900 58 596 1 chr6D.!!$F1 538
4 TraesCS5B01G323300 chr3D 586293039 586293605 566 True 448.00 448 81.78600 56 596 1 chr3D.!!$R2 540
5 TraesCS5B01G323300 chr4D 51848920 51849457 537 False 453.00 453 82.36400 61 595 1 chr4D.!!$F1 534
6 TraesCS5B01G323300 chr7A 450975087 450975655 568 False 444.00 444 81.67500 56 596 1 chr7A.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 489 0.029834 CCGCTTGCATGAACTATGGC 59.970 55.0 3.33 0.00 37.26 4.40 F
627 631 0.036483 TGGAGTTGCTCTAATGCGCA 60.036 50.0 14.96 14.96 35.36 6.09 F
640 644 0.039527 ATGCGCACTTTCGTTTTCCC 60.040 50.0 14.90 0.00 0.00 3.97 F
843 863 0.396556 ACACACCCAACCAAACCCTC 60.397 55.0 0.00 0.00 0.00 4.30 F
1744 1967 0.106868 TCTGGCAATCCCATGCTCTG 60.107 55.0 0.00 0.00 44.33 3.35 F
1780 2003 0.169009 GTCGGCTGAGCAAAATCACC 59.831 55.0 6.82 0.00 0.00 4.02 F
1796 2019 0.592637 CACCAATCGTTGCTGCTTCA 59.407 50.0 0.00 0.00 0.00 3.02 F
1797 2020 0.877071 ACCAATCGTTGCTGCTTCAG 59.123 50.0 0.00 0.00 34.12 3.02 F
3590 4240 0.170561 CTGCTGAGGCTGTCATTTGC 59.829 55.0 0.00 0.00 39.59 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1538 0.030101 ACGCACCGACCAAAAACATG 59.970 50.000 0.00 0.00 0.00 3.21 R
1726 1949 0.106868 TCAGAGCATGGGATTGCCAG 60.107 55.000 2.51 0.00 43.83 4.85 R
1739 1962 0.669932 CTCCGGCATAGCATCAGAGC 60.670 60.000 0.00 0.00 0.00 4.09 R
1778 2001 0.877071 CTGAAGCAGCAACGATTGGT 59.123 50.000 0.00 0.00 43.12 3.67 R
2986 3636 0.729690 GCGGCCTTTTCTCAGTCATC 59.270 55.000 0.00 0.00 0.00 2.92 R
2992 3642 0.884704 GTGTGAGCGGCCTTTTCTCA 60.885 55.000 0.00 5.48 34.78 3.27 R
3590 4240 1.069358 GGAGAATCTGGTAGAAGCCCG 59.931 57.143 0.00 0.00 33.73 6.13 R
3716 4366 1.258982 GCCGATAGCGAACATGAAGTG 59.741 52.381 0.00 0.00 40.82 3.16 R
5121 6336 0.792640 GTGGCAATCACAGAGTCACG 59.207 55.000 0.00 0.00 45.39 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.490759 CGACACATGCCAGCCGAC 61.491 66.667 0.00 0.00 0.00 4.79
20 21 3.490759 GACACATGCCAGCCGACG 61.491 66.667 0.00 0.00 0.00 5.12
21 22 4.314440 ACACATGCCAGCCGACGT 62.314 61.111 0.00 0.00 0.00 4.34
22 23 3.792047 CACATGCCAGCCGACGTG 61.792 66.667 0.00 0.00 0.00 4.49
47 48 4.496898 GCAGACGCAACTTGTTCG 57.503 55.556 0.00 0.00 38.36 3.95
48 49 1.931551 GCAGACGCAACTTGTTCGA 59.068 52.632 10.49 0.00 38.36 3.71
49 50 0.383124 GCAGACGCAACTTGTTCGAC 60.383 55.000 10.49 6.23 38.36 4.20
50 51 0.111704 CAGACGCAACTTGTTCGACG 60.112 55.000 10.49 0.00 0.00 5.12
51 52 1.200839 GACGCAACTTGTTCGACGG 59.799 57.895 0.00 0.00 0.00 4.79
52 53 1.210545 GACGCAACTTGTTCGACGGA 61.211 55.000 0.00 0.00 0.00 4.69
53 54 0.806884 ACGCAACTTGTTCGACGGAA 60.807 50.000 0.00 0.00 0.00 4.30
54 55 0.511221 CGCAACTTGTTCGACGGAAT 59.489 50.000 0.00 0.00 34.05 3.01
66 67 1.806247 CGACGGAATGCCAAGATGCTA 60.806 52.381 0.00 0.00 0.00 3.49
71 72 3.137533 GGAATGCCAAGATGCTAGAGAC 58.862 50.000 0.00 0.00 0.00 3.36
73 74 1.474330 TGCCAAGATGCTAGAGACGA 58.526 50.000 0.00 0.00 0.00 4.20
104 105 1.939255 GCAAGCCAAGATGCTAGAGAC 59.061 52.381 0.00 0.00 41.80 3.36
108 109 1.342819 GCCAAGATGCTAGAGACCGAT 59.657 52.381 0.00 0.00 0.00 4.18
126 127 3.747976 GCCGCCAACGCCAAGATT 61.748 61.111 0.00 0.00 38.22 2.40
145 146 3.421567 AAGGCGAAAGAAGTGGCTT 57.578 47.368 0.00 0.00 42.82 4.35
147 148 1.692411 AGGCGAAAGAAGTGGCTTTT 58.308 45.000 0.00 0.00 38.16 2.27
175 176 1.759459 GATGACCGGGGTGGAGATCC 61.759 65.000 6.32 0.00 42.00 3.36
181 182 0.687757 CGGGGTGGAGATCCTGAAGA 60.688 60.000 0.00 0.00 36.82 2.87
196 197 3.453717 CCTGAAGATGGATCTCAAGACCA 59.546 47.826 0.00 0.00 35.76 4.02
234 235 2.744202 GTTGTGGTTCGAGAAGATGCAT 59.256 45.455 0.00 0.00 0.00 3.96
241 242 0.529337 CGAGAAGATGCATGCCGACT 60.529 55.000 16.68 8.85 0.00 4.18
259 260 1.487482 CTTGCTCAAGTTCGACGACA 58.513 50.000 0.00 0.00 33.87 4.35
268 269 1.129326 GTTCGACGACAAGTGACCTG 58.871 55.000 0.00 0.00 0.00 4.00
271 272 0.030235 CGACGACAAGTGACCTGTGA 59.970 55.000 0.00 0.00 0.00 3.58
281 282 3.649277 GACCTGTGATGGCGAGCGT 62.649 63.158 0.00 0.00 0.00 5.07
297 300 3.616821 CGAGCGTCATCCTTTTTGTATGA 59.383 43.478 0.00 0.00 0.00 2.15
322 325 2.488937 CAAGTGTGCTGGCATGAATACA 59.511 45.455 0.00 0.00 0.00 2.29
331 334 0.657840 GCATGAATACAGGCCGTGAC 59.342 55.000 10.01 3.21 46.21 3.67
356 360 2.033194 GTCGAACTCCCGCCCTTTG 61.033 63.158 0.00 0.00 0.00 2.77
367 371 1.723608 CGCCCTTTGTTGTGTGCTGA 61.724 55.000 0.00 0.00 0.00 4.26
371 375 2.884012 CCCTTTGTTGTGTGCTGACATA 59.116 45.455 0.00 0.00 33.63 2.29
403 407 3.959975 GCAAGTGCGCCAACCGAA 61.960 61.111 4.18 0.00 40.02 4.30
404 408 2.051345 CAAGTGCGCCAACCGAAC 60.051 61.111 4.18 0.00 46.23 3.95
407 411 3.276846 GTGCGCCAACCGAACTGT 61.277 61.111 4.18 0.00 42.43 3.55
408 412 3.276091 TGCGCCAACCGAACTGTG 61.276 61.111 4.18 0.00 40.02 3.66
409 413 3.276846 GCGCCAACCGAACTGTGT 61.277 61.111 0.00 0.00 40.02 3.72
410 414 2.631428 CGCCAACCGAACTGTGTG 59.369 61.111 0.00 0.00 40.02 3.82
411 415 2.892334 CGCCAACCGAACTGTGTGG 61.892 63.158 0.00 0.00 40.02 4.17
412 416 1.822186 GCCAACCGAACTGTGTGGT 60.822 57.895 0.00 0.00 37.68 4.16
413 417 0.533308 GCCAACCGAACTGTGTGGTA 60.533 55.000 4.83 0.00 34.11 3.25
414 418 1.880646 GCCAACCGAACTGTGTGGTAT 60.881 52.381 4.83 0.00 34.11 2.73
415 419 2.500229 CCAACCGAACTGTGTGGTATT 58.500 47.619 4.83 0.00 34.11 1.89
416 420 2.882137 CCAACCGAACTGTGTGGTATTT 59.118 45.455 4.83 0.00 34.11 1.40
417 421 3.316868 CCAACCGAACTGTGTGGTATTTT 59.683 43.478 4.83 0.00 34.11 1.82
418 422 4.202070 CCAACCGAACTGTGTGGTATTTTT 60.202 41.667 4.83 0.00 34.11 1.94
419 423 4.823790 ACCGAACTGTGTGGTATTTTTC 57.176 40.909 2.65 0.00 33.25 2.29
420 424 4.457466 ACCGAACTGTGTGGTATTTTTCT 58.543 39.130 2.65 0.00 33.25 2.52
421 425 4.274950 ACCGAACTGTGTGGTATTTTTCTG 59.725 41.667 2.65 0.00 33.25 3.02
422 426 4.513692 CCGAACTGTGTGGTATTTTTCTGA 59.486 41.667 0.00 0.00 0.00 3.27
423 427 5.008217 CCGAACTGTGTGGTATTTTTCTGAA 59.992 40.000 0.00 0.00 0.00 3.02
424 428 6.136071 CGAACTGTGTGGTATTTTTCTGAAG 58.864 40.000 0.00 0.00 0.00 3.02
425 429 5.438761 ACTGTGTGGTATTTTTCTGAAGC 57.561 39.130 0.00 0.00 0.00 3.86
426 430 4.887071 ACTGTGTGGTATTTTTCTGAAGCA 59.113 37.500 0.00 0.00 0.00 3.91
427 431 5.009010 ACTGTGTGGTATTTTTCTGAAGCAG 59.991 40.000 0.00 0.00 0.00 4.24
428 432 5.129634 TGTGTGGTATTTTTCTGAAGCAGA 58.870 37.500 0.00 0.00 38.87 4.26
429 433 5.008613 TGTGTGGTATTTTTCTGAAGCAGAC 59.991 40.000 0.00 0.00 40.46 3.51
430 434 5.008613 GTGTGGTATTTTTCTGAAGCAGACA 59.991 40.000 0.00 0.00 40.46 3.41
431 435 5.769662 TGTGGTATTTTTCTGAAGCAGACAT 59.230 36.000 0.00 0.00 40.46 3.06
432 436 6.265196 TGTGGTATTTTTCTGAAGCAGACATT 59.735 34.615 0.00 0.00 40.46 2.71
433 437 6.583806 GTGGTATTTTTCTGAAGCAGACATTG 59.416 38.462 0.00 0.00 40.46 2.82
434 438 6.265196 TGGTATTTTTCTGAAGCAGACATTGT 59.735 34.615 0.00 0.00 40.46 2.71
435 439 7.446931 TGGTATTTTTCTGAAGCAGACATTGTA 59.553 33.333 0.00 0.00 40.46 2.41
436 440 8.462016 GGTATTTTTCTGAAGCAGACATTGTAT 58.538 33.333 0.00 0.00 40.46 2.29
437 441 9.282247 GTATTTTTCTGAAGCAGACATTGTATG 57.718 33.333 7.06 7.06 40.46 2.39
442 446 1.356624 GCAGACATTGTATGCCGGC 59.643 57.895 22.62 22.73 43.80 6.13
443 447 1.097547 GCAGACATTGTATGCCGGCT 61.098 55.000 29.70 15.76 43.80 5.52
444 448 0.659427 CAGACATTGTATGCCGGCTG 59.341 55.000 29.70 18.82 0.00 4.85
445 449 0.464373 AGACATTGTATGCCGGCTGG 60.464 55.000 29.70 7.41 38.77 4.85
446 450 0.463654 GACATTGTATGCCGGCTGGA 60.464 55.000 29.70 7.94 37.49 3.86
447 451 0.748005 ACATTGTATGCCGGCTGGAC 60.748 55.000 29.70 21.77 37.49 4.02
448 452 0.464373 CATTGTATGCCGGCTGGACT 60.464 55.000 29.70 9.52 37.49 3.85
449 453 0.255890 ATTGTATGCCGGCTGGACTT 59.744 50.000 29.70 11.25 37.49 3.01
450 454 0.037590 TTGTATGCCGGCTGGACTTT 59.962 50.000 29.70 6.03 37.49 2.66
451 455 0.392461 TGTATGCCGGCTGGACTTTC 60.392 55.000 29.70 9.63 37.49 2.62
452 456 1.153449 TATGCCGGCTGGACTTTCG 60.153 57.895 29.70 0.00 37.49 3.46
453 457 2.587322 TATGCCGGCTGGACTTTCGG 62.587 60.000 29.70 1.89 44.70 4.30
457 461 4.388499 GGCTGGACTTTCGGGCGA 62.388 66.667 0.00 0.00 0.00 5.54
458 462 3.119096 GCTGGACTTTCGGGCGAC 61.119 66.667 0.00 0.00 0.00 5.19
459 463 2.809601 CTGGACTTTCGGGCGACG 60.810 66.667 0.00 0.00 46.11 5.12
470 474 4.796231 GGCGACGACATGTCCGCT 62.796 66.667 33.27 14.84 45.23 5.52
471 475 2.809601 GCGACGACATGTCCGCTT 60.810 61.111 30.14 11.63 45.23 4.68
472 476 3.071459 GCGACGACATGTCCGCTTG 62.071 63.158 30.14 16.25 45.23 4.01
473 477 2.778679 GACGACATGTCCGCTTGC 59.221 61.111 20.03 0.00 42.04 4.01
474 478 2.027073 GACGACATGTCCGCTTGCA 61.027 57.895 20.03 0.00 42.04 4.08
475 479 1.361668 GACGACATGTCCGCTTGCAT 61.362 55.000 20.03 0.00 42.04 3.96
476 480 1.061411 CGACATGTCCGCTTGCATG 59.939 57.895 20.03 8.89 45.61 4.06
477 481 1.360931 CGACATGTCCGCTTGCATGA 61.361 55.000 20.03 0.00 43.60 3.07
478 482 0.804364 GACATGTCCGCTTGCATGAA 59.196 50.000 15.31 0.00 43.60 2.57
479 483 0.523072 ACATGTCCGCTTGCATGAAC 59.477 50.000 14.99 0.00 43.60 3.18
480 484 0.806868 CATGTCCGCTTGCATGAACT 59.193 50.000 3.33 0.00 43.60 3.01
481 485 2.009051 CATGTCCGCTTGCATGAACTA 58.991 47.619 3.33 0.00 43.60 2.24
482 486 2.401583 TGTCCGCTTGCATGAACTAT 57.598 45.000 3.33 0.00 0.00 2.12
483 487 2.009051 TGTCCGCTTGCATGAACTATG 58.991 47.619 3.33 0.00 39.88 2.23
484 488 1.331756 GTCCGCTTGCATGAACTATGG 59.668 52.381 3.33 0.00 37.26 2.74
485 489 0.029834 CCGCTTGCATGAACTATGGC 59.970 55.000 3.33 0.00 37.26 4.40
486 490 1.019673 CGCTTGCATGAACTATGGCT 58.980 50.000 3.33 0.00 37.26 4.75
487 491 1.268386 CGCTTGCATGAACTATGGCTG 60.268 52.381 3.33 0.00 37.26 4.85
488 492 1.535437 GCTTGCATGAACTATGGCTGC 60.535 52.381 3.33 0.00 37.26 5.25
489 493 0.734309 TTGCATGAACTATGGCTGCG 59.266 50.000 0.00 0.00 37.26 5.18
490 494 1.096967 TGCATGAACTATGGCTGCGG 61.097 55.000 0.00 0.00 37.26 5.69
491 495 1.789078 GCATGAACTATGGCTGCGGG 61.789 60.000 0.00 0.00 37.26 6.13
492 496 1.526917 ATGAACTATGGCTGCGGGC 60.527 57.895 13.15 13.15 40.90 6.13
493 497 1.987807 ATGAACTATGGCTGCGGGCT 61.988 55.000 21.03 8.37 41.46 5.19
494 498 1.452108 GAACTATGGCTGCGGGCTT 60.452 57.895 21.03 16.46 41.46 4.35
495 499 1.000896 AACTATGGCTGCGGGCTTT 60.001 52.632 21.03 10.29 41.46 3.51
496 500 0.611896 AACTATGGCTGCGGGCTTTT 60.612 50.000 21.03 7.75 41.46 2.27
497 501 0.611896 ACTATGGCTGCGGGCTTTTT 60.612 50.000 21.03 5.25 41.46 1.94
518 522 5.623174 TTTTTCAAAATTTACGTGCGGAC 57.377 34.783 0.00 0.00 0.00 4.79
519 523 3.965292 TTCAAAATTTACGTGCGGACA 57.035 38.095 8.11 0.00 0.00 4.02
520 524 4.491234 TTCAAAATTTACGTGCGGACAT 57.509 36.364 8.11 0.00 0.00 3.06
521 525 3.816091 TCAAAATTTACGTGCGGACATG 58.184 40.909 8.11 0.00 38.85 3.21
522 526 3.498777 TCAAAATTTACGTGCGGACATGA 59.501 39.130 8.11 0.00 36.58 3.07
523 527 3.740044 AAATTTACGTGCGGACATGAG 57.260 42.857 8.11 0.00 36.58 2.90
524 528 1.006832 ATTTACGTGCGGACATGAGC 58.993 50.000 8.11 2.42 36.58 4.26
525 529 1.348538 TTTACGTGCGGACATGAGCG 61.349 55.000 8.11 0.00 36.58 5.03
530 534 4.505217 GCGGACATGAGCGCGTTG 62.505 66.667 8.43 3.49 0.00 4.10
531 535 3.853330 CGGACATGAGCGCGTTGG 61.853 66.667 8.43 0.00 0.00 3.77
532 536 2.434185 GGACATGAGCGCGTTGGA 60.434 61.111 8.43 0.00 0.00 3.53
533 537 2.740714 GGACATGAGCGCGTTGGAC 61.741 63.158 8.43 0.51 0.00 4.02
534 538 3.071459 GACATGAGCGCGTTGGACG 62.071 63.158 8.43 0.00 45.88 4.79
548 552 3.850923 GACGCACCGTCGATTCAA 58.149 55.556 1.79 0.00 46.56 2.69
549 553 2.146954 GACGCACCGTCGATTCAAA 58.853 52.632 1.79 0.00 46.56 2.69
550 554 0.719465 GACGCACCGTCGATTCAAAT 59.281 50.000 1.79 0.00 46.56 2.32
551 555 0.719465 ACGCACCGTCGATTCAAATC 59.281 50.000 0.00 0.00 33.69 2.17
552 556 0.999406 CGCACCGTCGATTCAAATCT 59.001 50.000 0.00 0.00 33.24 2.40
553 557 1.005975 CGCACCGTCGATTCAAATCTC 60.006 52.381 0.00 0.00 33.24 2.75
554 558 1.999735 GCACCGTCGATTCAAATCTCA 59.000 47.619 0.00 0.00 33.24 3.27
555 559 2.415168 GCACCGTCGATTCAAATCTCAA 59.585 45.455 0.00 0.00 33.24 3.02
556 560 3.120338 GCACCGTCGATTCAAATCTCAAA 60.120 43.478 0.00 0.00 33.24 2.69
557 561 4.394795 CACCGTCGATTCAAATCTCAAAC 58.605 43.478 0.00 0.00 33.24 2.93
558 562 3.122948 ACCGTCGATTCAAATCTCAAACG 59.877 43.478 0.00 5.81 33.24 3.60
559 563 3.483574 CCGTCGATTCAAATCTCAAACGG 60.484 47.826 15.10 15.10 37.91 4.44
560 564 3.366724 CGTCGATTCAAATCTCAAACGGA 59.633 43.478 0.00 0.00 33.24 4.69
561 565 4.638963 GTCGATTCAAATCTCAAACGGAC 58.361 43.478 0.00 0.00 33.24 4.79
562 566 4.151689 GTCGATTCAAATCTCAAACGGACA 59.848 41.667 0.00 0.00 33.24 4.02
563 567 4.935205 TCGATTCAAATCTCAAACGGACAT 59.065 37.500 1.58 0.00 33.24 3.06
564 568 5.023920 CGATTCAAATCTCAAACGGACATG 58.976 41.667 0.00 0.00 33.24 3.21
565 569 5.163864 CGATTCAAATCTCAAACGGACATGA 60.164 40.000 0.00 0.00 33.24 3.07
566 570 5.356882 TTCAAATCTCAAACGGACATGAC 57.643 39.130 0.00 0.00 0.00 3.06
567 571 3.431912 TCAAATCTCAAACGGACATGACG 59.568 43.478 0.00 6.35 37.36 4.35
568 572 1.359848 ATCTCAAACGGACATGACGC 58.640 50.000 12.98 0.00 34.00 5.19
569 573 0.669318 TCTCAAACGGACATGACGCC 60.669 55.000 12.98 4.59 34.00 5.68
597 601 4.303993 CCGACCCAAACCGACGGT 62.304 66.667 15.37 15.37 38.97 4.83
598 602 3.039588 CGACCCAAACCGACGGTG 61.040 66.667 22.53 10.60 35.34 4.94
599 603 2.667199 GACCCAAACCGACGGTGG 60.667 66.667 22.53 19.79 35.34 4.61
600 604 3.162858 ACCCAAACCGACGGTGGA 61.163 61.111 24.38 0.00 35.34 4.02
601 605 2.667199 CCCAAACCGACGGTGGAC 60.667 66.667 22.53 0.00 35.34 4.02
614 618 4.595538 TGGACGCGCGTTGGAGTT 62.596 61.111 38.03 12.58 0.00 3.01
615 619 4.072088 GGACGCGCGTTGGAGTTG 62.072 66.667 38.03 3.89 0.00 3.16
616 620 4.719616 GACGCGCGTTGGAGTTGC 62.720 66.667 38.03 17.81 0.00 4.17
618 622 4.430423 CGCGCGTTGGAGTTGCTC 62.430 66.667 24.19 0.00 0.00 4.26
619 623 3.044305 GCGCGTTGGAGTTGCTCT 61.044 61.111 8.43 0.00 0.00 4.09
620 624 1.736645 GCGCGTTGGAGTTGCTCTA 60.737 57.895 8.43 0.00 0.00 2.43
621 625 1.289109 GCGCGTTGGAGTTGCTCTAA 61.289 55.000 8.43 0.00 0.00 2.10
622 626 1.359848 CGCGTTGGAGTTGCTCTAAT 58.640 50.000 0.00 0.00 33.81 1.73
623 627 1.061131 CGCGTTGGAGTTGCTCTAATG 59.939 52.381 0.00 9.23 39.75 1.90
624 628 2.813779 CGTTGGAGTTGCTCTAATGC 57.186 50.000 2.41 0.00 33.81 3.56
625 629 1.061131 CGTTGGAGTTGCTCTAATGCG 59.939 52.381 2.41 0.00 33.81 4.73
626 630 1.086696 TTGGAGTTGCTCTAATGCGC 58.913 50.000 0.00 0.00 35.36 6.09
627 631 0.036483 TGGAGTTGCTCTAATGCGCA 60.036 50.000 14.96 14.96 35.36 6.09
628 632 0.375106 GGAGTTGCTCTAATGCGCAC 59.625 55.000 14.90 0.00 33.27 5.34
629 633 1.363744 GAGTTGCTCTAATGCGCACT 58.636 50.000 14.90 3.33 33.27 4.40
630 634 1.734465 GAGTTGCTCTAATGCGCACTT 59.266 47.619 14.90 11.33 33.27 3.16
631 635 2.154462 AGTTGCTCTAATGCGCACTTT 58.846 42.857 14.90 6.91 33.27 2.66
632 636 2.160417 AGTTGCTCTAATGCGCACTTTC 59.840 45.455 14.90 0.11 33.27 2.62
633 637 0.721154 TGCTCTAATGCGCACTTTCG 59.279 50.000 14.90 0.00 35.36 3.46
634 638 0.721718 GCTCTAATGCGCACTTTCGT 59.278 50.000 14.90 0.00 0.00 3.85
635 639 1.128692 GCTCTAATGCGCACTTTCGTT 59.871 47.619 14.90 4.18 0.00 3.85
636 640 2.412847 GCTCTAATGCGCACTTTCGTTT 60.413 45.455 14.90 3.28 0.00 3.60
637 641 3.810373 CTCTAATGCGCACTTTCGTTTT 58.190 40.909 14.90 2.38 0.00 2.43
638 642 3.805823 TCTAATGCGCACTTTCGTTTTC 58.194 40.909 14.90 0.00 0.00 2.29
639 643 1.766069 AATGCGCACTTTCGTTTTCC 58.234 45.000 14.90 0.00 0.00 3.13
640 644 0.039527 ATGCGCACTTTCGTTTTCCC 60.040 50.000 14.90 0.00 0.00 3.97
641 645 1.357334 GCGCACTTTCGTTTTCCCA 59.643 52.632 0.30 0.00 0.00 4.37
645 649 2.724174 CGCACTTTCGTTTTCCCATTTC 59.276 45.455 0.00 0.00 0.00 2.17
654 658 3.058501 CGTTTTCCCATTTCTTAGCGTGT 60.059 43.478 0.00 0.00 0.00 4.49
659 663 3.009723 CCCATTTCTTAGCGTGTCATGT 58.990 45.455 0.00 0.00 0.00 3.21
665 669 3.833442 TCTTAGCGTGTCATGTACTGTG 58.167 45.455 0.00 0.00 0.00 3.66
754 762 4.671590 TCGGTGCTCGACCCCTCA 62.672 66.667 0.00 0.00 43.74 3.86
755 763 4.436998 CGGTGCTCGACCCCTCAC 62.437 72.222 0.00 0.00 42.62 3.51
756 764 4.083862 GGTGCTCGACCCCTCACC 62.084 72.222 0.00 0.00 41.66 4.02
757 765 3.311110 GTGCTCGACCCCTCACCA 61.311 66.667 0.00 0.00 0.00 4.17
758 766 3.311110 TGCTCGACCCCTCACCAC 61.311 66.667 0.00 0.00 0.00 4.16
799 819 2.687200 TCCATCACCACCCTCCGG 60.687 66.667 0.00 0.00 0.00 5.14
843 863 0.396556 ACACACCCAACCAAACCCTC 60.397 55.000 0.00 0.00 0.00 4.30
848 868 2.989253 CAACCAAACCCTCCCGGC 60.989 66.667 0.00 0.00 33.26 6.13
914 962 3.966543 CACCCCACCCCACCTCAC 61.967 72.222 0.00 0.00 0.00 3.51
917 965 3.330720 CCCACCCCACCTCACCTC 61.331 72.222 0.00 0.00 0.00 3.85
918 966 2.529136 CCACCCCACCTCACCTCA 60.529 66.667 0.00 0.00 0.00 3.86
919 967 2.750350 CACCCCACCTCACCTCAC 59.250 66.667 0.00 0.00 0.00 3.51
920 968 2.529389 ACCCCACCTCACCTCACC 60.529 66.667 0.00 0.00 0.00 4.02
921 969 3.330720 CCCCACCTCACCTCACCC 61.331 72.222 0.00 0.00 0.00 4.61
986 1034 1.671054 TTAACCGCAGCTCCAGCAC 60.671 57.895 0.48 0.00 45.16 4.40
1014 1062 2.612251 GCTAGCTCCCTCCCCTCT 59.388 66.667 7.70 0.00 0.00 3.69
1130 1189 2.770475 GAGGAAGGGAGGGAGGGC 60.770 72.222 0.00 0.00 0.00 5.19
1370 1441 1.002544 CAGGTCCAGAAGGGTGAGTTC 59.997 57.143 0.00 0.00 38.11 3.01
1440 1545 1.188863 GCTCCAGGCATCCATGTTTT 58.811 50.000 0.00 0.00 41.35 2.43
1441 1546 1.551883 GCTCCAGGCATCCATGTTTTT 59.448 47.619 0.00 0.00 41.35 1.94
1442 1547 2.675889 GCTCCAGGCATCCATGTTTTTG 60.676 50.000 0.00 0.00 41.35 2.44
1448 1553 1.272212 GCATCCATGTTTTTGGTCGGT 59.728 47.619 0.00 0.00 38.01 4.69
1477 1654 3.730761 CGCTTGCCTCTGGTGTGC 61.731 66.667 0.00 0.00 0.00 4.57
1497 1678 3.263170 TGCTTTGGTGGACTATAAGCTGA 59.737 43.478 0.00 0.00 41.25 4.26
1621 1841 4.910195 TCTTATCAGTTGATGTTGCTGGT 58.090 39.130 4.90 0.00 36.05 4.00
1626 1846 3.191162 TCAGTTGATGTTGCTGGTAATGC 59.809 43.478 0.00 0.00 0.00 3.56
1663 1883 7.256286 CAGATTCCACTCAAATTTTCTCATCC 58.744 38.462 0.00 0.00 0.00 3.51
1664 1884 6.950041 AGATTCCACTCAAATTTTCTCATCCA 59.050 34.615 0.00 0.00 0.00 3.41
1674 1894 6.600882 AATTTTCTCATCCAGCTGTGAAAT 57.399 33.333 13.81 5.12 38.02 2.17
1675 1895 5.633830 TTTTCTCATCCAGCTGTGAAATC 57.366 39.130 13.81 0.00 38.02 2.17
1676 1896 3.986996 TCTCATCCAGCTGTGAAATCA 57.013 42.857 13.81 0.00 0.00 2.57
1684 1905 3.562505 CAGCTGTGAAATCAGTTGCTTC 58.437 45.455 5.25 0.00 39.10 3.86
1696 1917 4.186926 TCAGTTGCTTCTGATATCAGTGC 58.813 43.478 29.06 29.06 44.12 4.40
1726 1949 2.363683 AGCTGCTGGAAATTGCTACTC 58.636 47.619 0.00 0.00 31.71 2.59
1739 1962 1.134007 TGCTACTCTGGCAATCCCATG 60.134 52.381 0.00 0.00 44.33 3.66
1744 1967 0.106868 TCTGGCAATCCCATGCTCTG 60.107 55.000 0.00 0.00 44.33 3.35
1754 1977 1.166129 CCATGCTCTGATGCTATGCC 58.834 55.000 0.00 0.00 0.00 4.40
1757 1980 1.368950 GCTCTGATGCTATGCCGGA 59.631 57.895 5.05 0.00 0.00 5.14
1758 1981 0.669932 GCTCTGATGCTATGCCGGAG 60.670 60.000 5.05 0.00 0.00 4.63
1777 2000 2.012673 AGATGTCGGCTGAGCAAAATC 58.987 47.619 6.82 3.93 0.00 2.17
1778 2001 1.739466 GATGTCGGCTGAGCAAAATCA 59.261 47.619 6.82 0.00 0.00 2.57
1779 2002 0.874390 TGTCGGCTGAGCAAAATCAC 59.126 50.000 6.82 0.00 0.00 3.06
1780 2003 0.169009 GTCGGCTGAGCAAAATCACC 59.831 55.000 6.82 0.00 0.00 4.02
1785 2008 2.523015 GCTGAGCAAAATCACCAATCG 58.477 47.619 0.00 0.00 0.00 3.34
1786 2009 2.095059 GCTGAGCAAAATCACCAATCGT 60.095 45.455 0.00 0.00 0.00 3.73
1796 2019 0.592637 CACCAATCGTTGCTGCTTCA 59.407 50.000 0.00 0.00 0.00 3.02
1797 2020 0.877071 ACCAATCGTTGCTGCTTCAG 59.123 50.000 0.00 0.00 34.12 3.02
1798 2021 0.877071 CCAATCGTTGCTGCTTCAGT 59.123 50.000 0.00 0.00 33.43 3.41
1800 2023 2.159653 CCAATCGTTGCTGCTTCAGTAC 60.160 50.000 0.00 0.00 33.43 2.73
1814 2037 2.964209 TCAGTACCTCTGATCCATCCC 58.036 52.381 0.00 0.00 46.77 3.85
1862 2085 2.597510 GCAGCGGGGAAGTTGGTT 60.598 61.111 0.00 0.00 0.00 3.67
2042 2265 2.419198 GATCAGATGACCGCCGCT 59.581 61.111 0.00 0.00 0.00 5.52
2057 2280 1.068250 CGCTAAGCAGCTAGACCCC 59.932 63.158 0.00 0.00 46.26 4.95
2111 2334 1.956170 CATCGCGGCACATCCTACC 60.956 63.158 6.13 0.00 0.00 3.18
2182 2413 4.730966 TGTAGGTAAATGGTTTGAGGCAA 58.269 39.130 0.00 0.00 0.00 4.52
2183 2414 5.141182 TGTAGGTAAATGGTTTGAGGCAAA 58.859 37.500 0.00 0.00 0.00 3.68
2193 2424 4.203226 GGTTTGAGGCAAAATTTTGGGAA 58.797 39.130 27.60 0.00 38.57 3.97
2200 2431 5.804639 AGGCAAAATTTTGGGAATTAGGAC 58.195 37.500 27.60 10.23 38.57 3.85
2232 2463 5.426833 TGGTTAATGGGATTTAATTGTGGGG 59.573 40.000 0.00 0.00 0.00 4.96
2254 2485 8.111545 TGGGGATATTTTCATTGGATCTATCTG 58.888 37.037 0.00 0.00 0.00 2.90
2304 2543 4.620097 CGGTAGGTAGGAAAACAAGAGTCC 60.620 50.000 0.00 0.00 0.00 3.85
2348 2587 3.587506 ACACCTAATGTTTAGGAGCCACT 59.412 43.478 17.93 0.00 38.98 4.00
2497 2758 9.727859 TGTGGTAGACATATGTTTTTAAAGCTA 57.272 29.630 10.30 1.37 0.00 3.32
2553 2819 7.655521 AAAACCATATAAAGTTAAGAGGCCC 57.344 36.000 0.00 0.00 0.00 5.80
2555 2821 6.592207 ACCATATAAAGTTAAGAGGCCCTT 57.408 37.500 0.00 5.31 38.87 3.95
2557 2823 6.159751 ACCATATAAAGTTAAGAGGCCCTTGA 59.840 38.462 14.65 5.71 36.34 3.02
2558 2824 7.147123 ACCATATAAAGTTAAGAGGCCCTTGAT 60.147 37.037 14.65 4.87 36.34 2.57
2631 2897 4.260985 CAGGGTGTAAACTGCATGTCATA 58.739 43.478 0.00 0.00 0.00 2.15
2642 2908 5.055144 ACTGCATGTCATACTGAAGCATAG 58.945 41.667 0.00 0.00 32.93 2.23
2668 3096 9.869844 GAATACAATATCAAACAATCTCTTCCG 57.130 33.333 0.00 0.00 0.00 4.30
2674 3102 4.703897 TCAAACAATCTCTTCCGTGAAGT 58.296 39.130 11.73 0.00 40.24 3.01
2681 3109 6.480320 ACAATCTCTTCCGTGAAGTATAATGC 59.520 38.462 11.73 0.00 40.24 3.56
2688 3116 7.985184 TCTTCCGTGAAGTATAATGCTTTGTAT 59.015 33.333 11.73 0.00 40.24 2.29
2689 3117 9.256477 CTTCCGTGAAGTATAATGCTTTGTATA 57.744 33.333 5.72 0.00 35.21 1.47
2701 3129 5.925506 TGCTTTGTATACTACAGGCTGTA 57.074 39.130 24.84 24.84 40.24 2.74
2722 3150 6.055588 TGTAGGCTAAGGTAAATCATTCAGC 58.944 40.000 0.00 0.00 0.00 4.26
2802 3233 6.431234 ACTTCATTCCTGTTTGTCCATCTAAC 59.569 38.462 0.00 0.00 33.63 2.34
2805 3236 6.430925 TCATTCCTGTTTGTCCATCTAACAAG 59.569 38.462 0.00 0.00 40.10 3.16
2806 3237 4.651778 TCCTGTTTGTCCATCTAACAAGG 58.348 43.478 0.00 0.00 40.10 3.61
2807 3238 4.349636 TCCTGTTTGTCCATCTAACAAGGA 59.650 41.667 0.00 0.00 40.10 3.36
2809 3240 5.048713 CCTGTTTGTCCATCTAACAAGGAAC 60.049 44.000 0.00 0.00 40.10 3.62
2813 3244 4.843728 TGTCCATCTAACAAGGAACCATC 58.156 43.478 0.00 0.00 32.30 3.51
2827 3471 2.738743 AACCATCATTTGGGTAGCCAG 58.261 47.619 14.38 2.88 46.56 4.85
2842 3486 1.174712 GCCAGTTTCAGCTTCAGGCA 61.175 55.000 0.00 0.00 44.79 4.75
2854 3499 4.974275 CAGCTTCAGGCATTGATAAATTCG 59.026 41.667 0.00 0.00 44.79 3.34
2856 3501 4.736793 GCTTCAGGCATTGATAAATTCGTG 59.263 41.667 0.00 0.00 41.35 4.35
2863 3508 7.754924 CAGGCATTGATAAATTCGTGTAACTTT 59.245 33.333 0.00 0.00 31.75 2.66
2874 3519 6.854496 TTCGTGTAACTTTAGAACAGCAAT 57.146 33.333 0.00 0.00 31.75 3.56
2930 3580 5.220643 GGAACCAGCATTTGAAAAGTTGTTG 60.221 40.000 0.00 0.00 0.00 3.33
2992 3642 2.154462 CAAAGGCCAGAAACGATGACT 58.846 47.619 5.01 0.00 0.00 3.41
3046 3696 1.122019 ACCCTGGGTCAGATATCGCC 61.122 60.000 14.05 1.56 32.44 5.54
3433 4083 6.182039 TCAGCATGGTTTCTTTAGAATTCG 57.818 37.500 0.00 0.00 36.16 3.34
3454 4104 6.282199 TCGCTCTTTCTTACAAGGATAAGT 57.718 37.500 0.00 0.00 34.36 2.24
3455 4105 7.400599 TCGCTCTTTCTTACAAGGATAAGTA 57.599 36.000 0.00 0.00 34.36 2.24
3456 4106 7.833786 TCGCTCTTTCTTACAAGGATAAGTAA 58.166 34.615 0.00 0.00 34.36 2.24
3457 4107 7.974501 TCGCTCTTTCTTACAAGGATAAGTAAG 59.025 37.037 0.00 0.00 45.29 2.34
3590 4240 0.170561 CTGCTGAGGCTGTCATTTGC 59.829 55.000 0.00 0.00 39.59 3.68
3658 4308 5.768317 CGGTATGTTGAAATTTCTGTTGGT 58.232 37.500 18.64 3.78 0.00 3.67
3691 4341 6.357367 GTTTTATGAGTCCATGTAGGGATGT 58.643 40.000 0.00 0.00 39.62 3.06
3699 4349 4.887071 GTCCATGTAGGGATGTTTTATGCA 59.113 41.667 0.00 0.00 39.62 3.96
3701 4351 6.040842 GTCCATGTAGGGATGTTTTATGCATT 59.959 38.462 3.54 0.00 39.62 3.56
3702 4352 7.230510 GTCCATGTAGGGATGTTTTATGCATTA 59.769 37.037 3.54 0.00 39.62 1.90
3703 4353 7.949565 TCCATGTAGGGATGTTTTATGCATTAT 59.050 33.333 3.54 0.00 38.24 1.28
3704 4354 8.030692 CCATGTAGGGATGTTTTATGCATTATG 58.969 37.037 3.54 0.00 0.00 1.90
3705 4355 6.980593 TGTAGGGATGTTTTATGCATTATGC 58.019 36.000 10.65 10.65 45.29 3.14
3728 4378 3.928992 ACTATGAGTGCACTTCATGTTCG 59.071 43.478 27.68 19.36 0.00 3.95
3731 4381 2.288763 TGAGTGCACTTCATGTTCGCTA 60.289 45.455 22.65 0.00 33.11 4.26
3734 4384 1.926510 TGCACTTCATGTTCGCTATCG 59.073 47.619 0.00 0.00 0.00 2.92
3737 4387 1.134818 ACTTCATGTTCGCTATCGGCA 60.135 47.619 0.00 0.00 41.91 5.69
3746 4396 3.494045 TCGCTATCGGCATAGAGAATG 57.506 47.619 7.77 0.00 38.18 2.67
3785 4442 7.737972 TTGTAATATGTGTTACACTTGTGCT 57.262 32.000 16.79 0.00 42.49 4.40
3786 4443 7.127917 TGTAATATGTGTTACACTTGTGCTG 57.872 36.000 16.79 0.00 39.08 4.41
3787 4444 6.708502 TGTAATATGTGTTACACTTGTGCTGT 59.291 34.615 16.79 0.00 39.08 4.40
3788 4445 6.633500 AATATGTGTTACACTTGTGCTGTT 57.367 33.333 16.79 0.00 35.11 3.16
3789 4446 3.755965 TGTGTTACACTTGTGCTGTTG 57.244 42.857 16.79 0.00 35.11 3.33
3791 4448 3.120025 TGTGTTACACTTGTGCTGTTGTG 60.120 43.478 16.79 0.00 35.11 3.33
3805 4462 3.003689 GCTGTTGTGCATAGTTTCACTGT 59.996 43.478 0.00 0.00 34.49 3.55
3811 4468 6.908870 TGTGCATAGTTTCACTGTATCATC 57.091 37.500 0.00 0.00 34.49 2.92
3812 4469 6.405538 TGTGCATAGTTTCACTGTATCATCA 58.594 36.000 0.00 0.00 34.49 3.07
3831 4488 4.362470 TCATATTCTCAATGCAGGAGGG 57.638 45.455 15.78 0.00 33.18 4.30
3913 4571 4.373527 TGTTGTTTACAGCGACTACATGT 58.626 39.130 2.69 2.69 31.68 3.21
3998 4656 5.333645 GCAATTTCGCTATATCACAGGTGAG 60.334 44.000 8.24 0.00 43.61 3.51
4030 4688 1.472480 CTTGCAAACTACCATTCCGGG 59.528 52.381 0.00 0.00 40.22 5.73
4105 4764 2.408835 CGCGTTTCATCATGGCCC 59.591 61.111 0.00 0.00 0.00 5.80
4106 4765 2.405805 CGCGTTTCATCATGGCCCA 61.406 57.895 0.00 0.00 0.00 5.36
4146 4809 3.564455 ACGCGACGTCTTTCTTTCT 57.436 47.368 15.93 0.00 33.69 2.52
4149 4812 2.218075 ACGCGACGTCTTTCTTTCTTTC 59.782 45.455 15.93 0.00 33.69 2.62
4150 4813 2.217847 CGCGACGTCTTTCTTTCTTTCA 59.782 45.455 14.70 0.00 0.00 2.69
4151 4814 3.120991 CGCGACGTCTTTCTTTCTTTCAT 60.121 43.478 14.70 0.00 0.00 2.57
4152 4815 4.387083 GCGACGTCTTTCTTTCTTTCATC 58.613 43.478 14.70 0.00 0.00 2.92
4153 4816 4.084537 GCGACGTCTTTCTTTCTTTCATCA 60.085 41.667 14.70 0.00 0.00 3.07
4155 4818 6.011879 CGACGTCTTTCTTTCTTTCATCATG 58.988 40.000 14.70 0.00 0.00 3.07
4157 4820 6.662616 ACGTCTTTCTTTCTTTCATCATGTG 58.337 36.000 0.00 0.00 0.00 3.21
4158 4821 6.260936 ACGTCTTTCTTTCTTTCATCATGTGT 59.739 34.615 0.00 0.00 0.00 3.72
4159 4822 6.576313 CGTCTTTCTTTCTTTCATCATGTGTG 59.424 38.462 0.00 0.00 0.00 3.82
4160 4823 6.361748 GTCTTTCTTTCTTTCATCATGTGTGC 59.638 38.462 0.00 0.00 0.00 4.57
4197 4860 8.255394 TGTATCTGATTTATTATGCCATGTCG 57.745 34.615 0.00 0.00 0.00 4.35
4359 5022 2.100989 GAGTACCTCCATTCGTCCAGT 58.899 52.381 0.00 0.00 0.00 4.00
4374 5037 0.321298 CCAGTCCGAACCCGAATGTT 60.321 55.000 0.00 0.00 38.22 2.71
4404 5067 3.758931 GTTGTGGGCGGGCCATTC 61.759 66.667 27.04 15.09 37.98 2.67
4686 5352 3.709653 TCATTGGCCGTCTCTTATTAGGT 59.290 43.478 0.00 0.00 0.00 3.08
4705 5372 2.481449 GGTGGGTGATTAGCAGTAGTCG 60.481 54.545 0.00 0.00 0.00 4.18
4712 5379 5.392811 GGTGATTAGCAGTAGTCGTTAGTGT 60.393 44.000 0.00 0.00 35.50 3.55
4715 5382 5.892160 TTAGCAGTAGTCGTTAGTGTCAT 57.108 39.130 0.00 0.00 35.50 3.06
4717 5384 5.232610 AGCAGTAGTCGTTAGTGTCATAC 57.767 43.478 0.00 0.00 35.50 2.39
4732 5399 6.622549 AGTGTCATACTACTCTTGCTTGTAC 58.377 40.000 0.00 0.00 38.04 2.90
4733 5400 5.805994 GTGTCATACTACTCTTGCTTGTACC 59.194 44.000 0.00 0.00 0.00 3.34
4744 5413 7.155328 ACTCTTGCTTGTACCATAGTATATGC 58.845 38.462 0.00 0.46 39.61 3.14
4747 5416 9.035890 TCTTGCTTGTACCATAGTATATGCTAT 57.964 33.333 7.46 7.46 39.77 2.97
4887 5563 4.032960 TGATTGGTCTGTGTAATGGCTT 57.967 40.909 0.00 0.00 0.00 4.35
4888 5564 4.406456 TGATTGGTCTGTGTAATGGCTTT 58.594 39.130 0.00 0.00 0.00 3.51
4889 5565 4.218200 TGATTGGTCTGTGTAATGGCTTTG 59.782 41.667 0.00 0.00 0.00 2.77
4890 5566 2.513753 TGGTCTGTGTAATGGCTTTGG 58.486 47.619 0.00 0.00 0.00 3.28
4891 5567 1.202348 GGTCTGTGTAATGGCTTTGGC 59.798 52.381 0.00 0.00 37.82 4.52
4892 5568 2.162681 GTCTGTGTAATGGCTTTGGCT 58.837 47.619 0.00 0.00 38.73 4.75
4949 6158 6.013689 GCGCAATTCTTTTACAGTACAGTAC 58.986 40.000 0.30 2.05 0.00 2.73
5016 6226 4.679373 AAGGCATAGTTCATCGTGATCT 57.321 40.909 0.00 4.69 31.89 2.75
5017 6227 5.791336 AAGGCATAGTTCATCGTGATCTA 57.209 39.130 0.00 7.68 34.36 1.98
5060 6275 5.105635 CCAGCATGTGATTAGTGTTGGAAAT 60.106 40.000 1.84 0.00 44.12 2.17
5110 6325 4.895297 TGGGAAGATAAAGAAATGCATCCC 59.105 41.667 0.00 2.80 43.46 3.85
5121 6336 2.004408 ATGCATCCCTGGGCTTCTCC 62.004 60.000 8.22 0.00 0.00 3.71
5177 6392 4.409901 TGACCCTTGCTAATCATCATCTCA 59.590 41.667 0.00 0.00 0.00 3.27
5223 6448 3.181575 CCTCGTTTTCAAAAATTCGTGCC 59.818 43.478 0.00 0.00 0.00 5.01
5225 6450 4.425520 TCGTTTTCAAAAATTCGTGCCTT 58.574 34.783 0.00 0.00 0.00 4.35
5226 6451 5.579718 TCGTTTTCAAAAATTCGTGCCTTA 58.420 33.333 0.00 0.00 0.00 2.69
5279 6508 8.779303 CCCACAACAAAAGAAAACTAAAACTTT 58.221 29.630 0.00 0.00 34.67 2.66
5313 6542 5.735766 AGACTTAAGCTCCATTGAACTACC 58.264 41.667 1.29 0.00 0.00 3.18
5356 6668 2.019807 ACTGTTCCCTCCGTTCCTAA 57.980 50.000 0.00 0.00 0.00 2.69
5357 6669 2.332117 ACTGTTCCCTCCGTTCCTAAA 58.668 47.619 0.00 0.00 0.00 1.85
5358 6670 2.910977 ACTGTTCCCTCCGTTCCTAAAT 59.089 45.455 0.00 0.00 0.00 1.40
5359 6671 4.098894 ACTGTTCCCTCCGTTCCTAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5360 6672 4.720273 ACTGTTCCCTCCGTTCCTAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
5361 6673 5.901276 ACTGTTCCCTCCGTTCCTAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
5362 6674 6.384886 ACTGTTCCCTCCGTTCCTAAATATAA 59.615 38.462 0.00 0.00 0.00 0.98
5363 6675 6.823497 TGTTCCCTCCGTTCCTAAATATAAG 58.177 40.000 0.00 0.00 0.00 1.73
5364 6676 6.384886 TGTTCCCTCCGTTCCTAAATATAAGT 59.615 38.462 0.00 0.00 0.00 2.24
5365 6677 7.564660 TGTTCCCTCCGTTCCTAAATATAAGTA 59.435 37.037 0.00 0.00 0.00 2.24
5400 6712 8.612619 GGTTTCACTACAAACTACATATGGATG 58.387 37.037 7.80 0.00 36.62 3.51
5410 6722 9.249457 CAAACTACATATGGATGTATATAGGCG 57.751 37.037 7.80 0.00 45.42 5.52
5442 6754 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
5451 6763 2.420022 ACTCATTTTGCTCCGCATGTAC 59.580 45.455 0.00 0.00 38.76 2.90
5453 6765 2.677836 TCATTTTGCTCCGCATGTACTC 59.322 45.455 0.00 0.00 38.76 2.59
5563 6907 0.839477 CGTGAAAACTTGCAGTTGCG 59.161 50.000 0.00 3.22 45.83 4.85
5564 6908 1.199624 GTGAAAACTTGCAGTTGCGG 58.800 50.000 0.00 0.00 45.83 5.69
5571 6915 1.870055 CTTGCAGTTGCGGCTCCATT 61.870 55.000 0.00 0.00 45.83 3.16
5572 6916 1.462731 TTGCAGTTGCGGCTCCATTT 61.463 50.000 0.00 0.00 45.83 2.32
5573 6917 0.607762 TGCAGTTGCGGCTCCATTTA 60.608 50.000 0.00 0.00 45.83 1.40
5693 7043 6.681777 AGACTTGGCTTTTGATGTCATAAAC 58.318 36.000 0.00 0.00 0.00 2.01
5703 7053 9.311916 CTTTTGATGTCATAAACCAGAAACAAA 57.688 29.630 0.00 0.00 0.00 2.83
5792 7142 7.992180 ATTGCTCACAAAAAGTAAGAAACAG 57.008 32.000 0.00 0.00 39.77 3.16
5793 7143 5.890334 TGCTCACAAAAAGTAAGAAACAGG 58.110 37.500 0.00 0.00 0.00 4.00
5805 7155 9.811995 AAAGTAAGAAACAGGGTAATTTTTGAC 57.188 29.630 0.00 0.00 0.00 3.18
5806 7156 8.762481 AGTAAGAAACAGGGTAATTTTTGACT 57.238 30.769 0.00 0.00 0.00 3.41
5807 7157 8.630037 AGTAAGAAACAGGGTAATTTTTGACTG 58.370 33.333 0.00 0.00 0.00 3.51
5839 7189 3.660177 AGAGAGGTGCTCATAGGGATAGA 59.340 47.826 0.00 0.00 46.45 1.98
5847 7197 1.827344 TCATAGGGATAGAGCATGCGG 59.173 52.381 13.01 0.00 0.00 5.69
5852 7202 1.289066 GATAGAGCATGCGGGCGTA 59.711 57.895 13.01 1.08 39.27 4.42
5863 7213 1.069358 TGCGGGCGTATGTTCATATGA 59.931 47.619 14.01 0.00 0.00 2.15
5922 7280 7.039574 TGGATCAATCAAAGAAAATCAGCTTCA 60.040 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.490759 GTCGGCTGGCATGTGTCG 61.491 66.667 1.08 0.00 0.00 4.35
3 4 3.490759 CGTCGGCTGGCATGTGTC 61.491 66.667 0.00 0.00 0.00 3.67
4 5 4.314440 ACGTCGGCTGGCATGTGT 62.314 61.111 0.00 0.00 0.00 3.72
30 31 0.383124 GTCGAACAAGTTGCGTCTGC 60.383 55.000 1.81 0.00 43.20 4.26
31 32 0.111704 CGTCGAACAAGTTGCGTCTG 60.112 55.000 1.81 0.00 0.00 3.51
32 33 1.213094 CCGTCGAACAAGTTGCGTCT 61.213 55.000 1.81 0.00 0.00 4.18
33 34 1.200839 CCGTCGAACAAGTTGCGTC 59.799 57.895 1.81 0.00 0.00 5.19
34 35 0.806884 TTCCGTCGAACAAGTTGCGT 60.807 50.000 1.81 0.00 0.00 5.24
35 36 0.511221 ATTCCGTCGAACAAGTTGCG 59.489 50.000 1.81 0.00 0.00 4.85
36 37 1.950472 CATTCCGTCGAACAAGTTGC 58.050 50.000 1.81 0.00 0.00 4.17
37 38 1.399727 GGCATTCCGTCGAACAAGTTG 60.400 52.381 0.00 0.00 0.00 3.16
38 39 0.872388 GGCATTCCGTCGAACAAGTT 59.128 50.000 0.00 0.00 0.00 2.66
39 40 0.250124 TGGCATTCCGTCGAACAAGT 60.250 50.000 0.00 0.00 34.14 3.16
40 41 0.871722 TTGGCATTCCGTCGAACAAG 59.128 50.000 0.00 0.00 34.14 3.16
41 42 0.871722 CTTGGCATTCCGTCGAACAA 59.128 50.000 0.00 0.00 34.14 2.83
42 43 0.034198 TCTTGGCATTCCGTCGAACA 59.966 50.000 0.00 0.00 34.14 3.18
43 44 1.062587 CATCTTGGCATTCCGTCGAAC 59.937 52.381 0.00 0.00 34.14 3.95
44 45 1.368641 CATCTTGGCATTCCGTCGAA 58.631 50.000 0.00 0.00 34.14 3.71
45 46 1.089481 GCATCTTGGCATTCCGTCGA 61.089 55.000 0.00 0.00 34.14 4.20
46 47 1.091771 AGCATCTTGGCATTCCGTCG 61.092 55.000 0.00 0.00 35.83 5.12
47 48 1.869767 CTAGCATCTTGGCATTCCGTC 59.130 52.381 0.00 0.00 35.83 4.79
48 49 1.486310 TCTAGCATCTTGGCATTCCGT 59.514 47.619 0.00 0.00 35.83 4.69
49 50 2.141517 CTCTAGCATCTTGGCATTCCG 58.858 52.381 0.00 0.00 35.83 4.30
50 51 3.137533 GTCTCTAGCATCTTGGCATTCC 58.862 50.000 0.00 0.00 35.83 3.01
51 52 2.799412 CGTCTCTAGCATCTTGGCATTC 59.201 50.000 0.00 0.00 35.83 2.67
52 53 2.432146 TCGTCTCTAGCATCTTGGCATT 59.568 45.455 0.00 0.00 35.83 3.56
53 54 2.034878 TCGTCTCTAGCATCTTGGCAT 58.965 47.619 0.00 0.00 35.83 4.40
54 55 1.474330 TCGTCTCTAGCATCTTGGCA 58.526 50.000 0.00 0.00 35.83 4.92
66 67 1.939769 GCTTCTCCGCCTTCGTCTCT 61.940 60.000 0.00 0.00 0.00 3.10
71 72 2.744768 GCTTGCTTCTCCGCCTTCG 61.745 63.158 0.00 0.00 0.00 3.79
73 74 2.360475 GGCTTGCTTCTCCGCCTT 60.360 61.111 0.00 0.00 39.42 4.35
125 126 2.561478 AGCCACTTCTTTCGCCTTAA 57.439 45.000 0.00 0.00 0.00 1.85
126 127 2.561478 AAGCCACTTCTTTCGCCTTA 57.439 45.000 0.00 0.00 0.00 2.69
145 146 1.368345 CCGGTCATCATGCTCGCAAA 61.368 55.000 0.00 0.00 0.00 3.68
147 148 2.202919 CCGGTCATCATGCTCGCA 60.203 61.111 0.00 0.00 0.00 5.10
175 176 4.750021 TGGTCTTGAGATCCATCTTCAG 57.250 45.455 0.00 0.00 37.25 3.02
181 182 2.484417 GCGACATGGTCTTGAGATCCAT 60.484 50.000 0.00 8.42 41.88 3.41
196 197 0.693049 AACCTCTTCCTTGGCGACAT 59.307 50.000 0.00 0.00 42.32 3.06
241 242 1.858458 CTTGTCGTCGAACTTGAGCAA 59.142 47.619 0.00 0.00 0.00 3.91
259 260 0.036952 CTCGCCATCACAGGTCACTT 60.037 55.000 0.00 0.00 0.00 3.16
268 269 2.240500 GGATGACGCTCGCCATCAC 61.241 63.158 17.61 6.23 40.55 3.06
271 272 0.392998 AAAAGGATGACGCTCGCCAT 60.393 50.000 0.00 0.00 0.00 4.40
281 282 5.716228 ACTTGCCATCATACAAAAAGGATGA 59.284 36.000 0.00 0.00 39.52 2.92
331 334 2.019951 CGGGAGTTCGACAACACCG 61.020 63.158 8.38 8.38 42.61 4.94
334 337 2.029964 GGCGGGAGTTCGACAACA 59.970 61.111 0.00 0.00 38.21 3.33
337 340 2.513259 AAAGGGCGGGAGTTCGACA 61.513 57.895 0.00 0.00 40.50 4.35
356 360 2.414559 GGCACATATGTCAGCACACAAC 60.415 50.000 17.19 0.00 34.48 3.32
402 406 5.359576 TGCTTCAGAAAAATACCACACAGTT 59.640 36.000 0.00 0.00 0.00 3.16
403 407 4.887071 TGCTTCAGAAAAATACCACACAGT 59.113 37.500 0.00 0.00 0.00 3.55
404 408 5.239306 TCTGCTTCAGAAAAATACCACACAG 59.761 40.000 0.00 0.00 37.57 3.66
405 409 5.008613 GTCTGCTTCAGAAAAATACCACACA 59.991 40.000 0.00 0.00 42.46 3.72
406 410 5.008613 TGTCTGCTTCAGAAAAATACCACAC 59.991 40.000 0.00 0.00 42.46 3.82
407 411 5.129634 TGTCTGCTTCAGAAAAATACCACA 58.870 37.500 0.00 0.00 42.46 4.17
408 412 5.689383 TGTCTGCTTCAGAAAAATACCAC 57.311 39.130 0.00 0.00 42.46 4.16
409 413 6.265196 ACAATGTCTGCTTCAGAAAAATACCA 59.735 34.615 0.00 0.00 42.46 3.25
410 414 6.681777 ACAATGTCTGCTTCAGAAAAATACC 58.318 36.000 0.00 0.00 42.46 2.73
411 415 9.282247 CATACAATGTCTGCTTCAGAAAAATAC 57.718 33.333 0.00 0.00 42.46 1.89
412 416 7.970061 GCATACAATGTCTGCTTCAGAAAAATA 59.030 33.333 15.21 0.00 42.46 1.40
413 417 6.810182 GCATACAATGTCTGCTTCAGAAAAAT 59.190 34.615 15.21 0.00 42.46 1.82
414 418 6.151691 GCATACAATGTCTGCTTCAGAAAAA 58.848 36.000 15.21 0.00 42.46 1.94
415 419 5.335897 GGCATACAATGTCTGCTTCAGAAAA 60.336 40.000 20.38 0.00 42.46 2.29
416 420 4.156556 GGCATACAATGTCTGCTTCAGAAA 59.843 41.667 20.38 0.00 42.46 2.52
417 421 3.691118 GGCATACAATGTCTGCTTCAGAA 59.309 43.478 20.38 0.00 42.46 3.02
418 422 3.273434 GGCATACAATGTCTGCTTCAGA 58.727 45.455 20.38 0.00 38.25 3.27
419 423 2.031314 CGGCATACAATGTCTGCTTCAG 59.969 50.000 20.38 8.53 36.21 3.02
420 424 2.009051 CGGCATACAATGTCTGCTTCA 58.991 47.619 20.38 0.00 36.21 3.02
421 425 1.331756 CCGGCATACAATGTCTGCTTC 59.668 52.381 20.38 6.78 36.21 3.86
422 426 1.382522 CCGGCATACAATGTCTGCTT 58.617 50.000 20.38 0.00 36.21 3.91
423 427 1.097547 GCCGGCATACAATGTCTGCT 61.098 55.000 24.80 0.00 41.13 4.24
424 428 1.097547 AGCCGGCATACAATGTCTGC 61.098 55.000 31.54 14.32 44.06 4.26
425 429 0.659427 CAGCCGGCATACAATGTCTG 59.341 55.000 31.54 10.17 31.27 3.51
426 430 0.464373 CCAGCCGGCATACAATGTCT 60.464 55.000 31.54 0.00 31.27 3.41
427 431 0.463654 TCCAGCCGGCATACAATGTC 60.464 55.000 31.54 0.00 0.00 3.06
428 432 0.748005 GTCCAGCCGGCATACAATGT 60.748 55.000 31.54 0.76 0.00 2.71
429 433 0.464373 AGTCCAGCCGGCATACAATG 60.464 55.000 31.54 17.00 0.00 2.82
430 434 0.255890 AAGTCCAGCCGGCATACAAT 59.744 50.000 31.54 12.97 0.00 2.71
431 435 0.037590 AAAGTCCAGCCGGCATACAA 59.962 50.000 31.54 6.01 0.00 2.41
432 436 0.392461 GAAAGTCCAGCCGGCATACA 60.392 55.000 31.54 6.20 0.00 2.29
433 437 1.429148 CGAAAGTCCAGCCGGCATAC 61.429 60.000 31.54 22.39 0.00 2.39
434 438 1.153449 CGAAAGTCCAGCCGGCATA 60.153 57.895 31.54 10.66 0.00 3.14
435 439 2.436646 CGAAAGTCCAGCCGGCAT 60.437 61.111 31.54 11.31 0.00 4.40
436 440 4.697756 CCGAAAGTCCAGCCGGCA 62.698 66.667 31.54 4.59 35.29 5.69
440 444 4.388499 TCGCCCGAAAGTCCAGCC 62.388 66.667 0.00 0.00 0.00 4.85
441 445 3.119096 GTCGCCCGAAAGTCCAGC 61.119 66.667 0.00 0.00 0.00 4.85
442 446 2.809601 CGTCGCCCGAAAGTCCAG 60.810 66.667 0.00 0.00 39.56 3.86
443 447 3.296836 TCGTCGCCCGAAAGTCCA 61.297 61.111 0.00 0.00 44.03 4.02
450 454 4.124351 GGACATGTCGTCGCCCGA 62.124 66.667 19.33 0.00 46.42 5.14
453 457 4.796231 AGCGGACATGTCGTCGCC 62.796 66.667 32.19 20.56 46.42 5.54
454 458 2.809601 AAGCGGACATGTCGTCGC 60.810 61.111 30.23 30.23 46.42 5.19
455 459 3.071459 GCAAGCGGACATGTCGTCG 62.071 63.158 19.33 18.07 46.42 5.12
456 460 1.361668 ATGCAAGCGGACATGTCGTC 61.362 55.000 19.33 12.95 44.57 4.20
457 461 1.375908 ATGCAAGCGGACATGTCGT 60.376 52.632 19.33 4.03 0.00 4.34
458 462 1.061411 CATGCAAGCGGACATGTCG 59.939 57.895 19.33 15.06 39.05 4.35
459 463 0.804364 TTCATGCAAGCGGACATGTC 59.196 50.000 17.91 17.91 43.34 3.06
460 464 0.523072 GTTCATGCAAGCGGACATGT 59.477 50.000 0.00 0.00 43.34 3.21
461 465 0.806868 AGTTCATGCAAGCGGACATG 59.193 50.000 8.92 8.92 44.05 3.21
462 466 2.401583 TAGTTCATGCAAGCGGACAT 57.598 45.000 0.00 0.00 0.00 3.06
463 467 2.009051 CATAGTTCATGCAAGCGGACA 58.991 47.619 0.00 0.00 0.00 4.02
464 468 1.331756 CCATAGTTCATGCAAGCGGAC 59.668 52.381 0.00 0.00 32.84 4.79
465 469 1.667236 CCATAGTTCATGCAAGCGGA 58.333 50.000 0.00 0.00 32.84 5.54
466 470 0.029834 GCCATAGTTCATGCAAGCGG 59.970 55.000 0.00 0.00 32.84 5.52
467 471 1.019673 AGCCATAGTTCATGCAAGCG 58.980 50.000 0.00 0.00 32.84 4.68
468 472 1.535437 GCAGCCATAGTTCATGCAAGC 60.535 52.381 0.00 0.00 36.88 4.01
469 473 1.268386 CGCAGCCATAGTTCATGCAAG 60.268 52.381 0.00 0.00 36.70 4.01
470 474 0.734309 CGCAGCCATAGTTCATGCAA 59.266 50.000 0.00 0.00 36.70 4.08
471 475 1.096967 CCGCAGCCATAGTTCATGCA 61.097 55.000 0.00 0.00 36.70 3.96
472 476 1.650912 CCGCAGCCATAGTTCATGC 59.349 57.895 0.00 0.00 32.84 4.06
473 477 1.789078 GCCCGCAGCCATAGTTCATG 61.789 60.000 0.00 0.00 34.35 3.07
474 478 1.526917 GCCCGCAGCCATAGTTCAT 60.527 57.895 0.00 0.00 34.35 2.57
475 479 2.124736 GCCCGCAGCCATAGTTCA 60.125 61.111 0.00 0.00 34.35 3.18
476 480 1.032114 AAAGCCCGCAGCCATAGTTC 61.032 55.000 0.00 0.00 45.47 3.01
477 481 0.611896 AAAAGCCCGCAGCCATAGTT 60.612 50.000 0.00 0.00 45.47 2.24
478 482 0.611896 AAAAAGCCCGCAGCCATAGT 60.612 50.000 0.00 0.00 45.47 2.12
479 483 2.192605 AAAAAGCCCGCAGCCATAG 58.807 52.632 0.00 0.00 45.47 2.23
480 484 4.432601 AAAAAGCCCGCAGCCATA 57.567 50.000 0.00 0.00 45.47 2.74
496 500 5.100259 TGTCCGCACGTAAATTTTGAAAAA 58.900 33.333 0.00 0.00 0.00 1.94
497 501 4.669318 TGTCCGCACGTAAATTTTGAAAA 58.331 34.783 0.00 0.00 0.00 2.29
498 502 4.288670 TGTCCGCACGTAAATTTTGAAA 57.711 36.364 0.00 0.00 0.00 2.69
499 503 3.965292 TGTCCGCACGTAAATTTTGAA 57.035 38.095 0.00 0.00 0.00 2.69
500 504 3.498777 TCATGTCCGCACGTAAATTTTGA 59.501 39.130 0.00 0.00 0.00 2.69
501 505 3.816091 TCATGTCCGCACGTAAATTTTG 58.184 40.909 0.00 0.00 0.00 2.44
502 506 3.669557 GCTCATGTCCGCACGTAAATTTT 60.670 43.478 0.00 0.00 0.00 1.82
503 507 2.159572 GCTCATGTCCGCACGTAAATTT 60.160 45.455 0.00 0.00 0.00 1.82
504 508 1.396996 GCTCATGTCCGCACGTAAATT 59.603 47.619 0.00 0.00 0.00 1.82
505 509 1.006832 GCTCATGTCCGCACGTAAAT 58.993 50.000 0.00 0.00 0.00 1.40
506 510 1.348538 CGCTCATGTCCGCACGTAAA 61.349 55.000 0.00 0.00 0.00 2.01
507 511 1.803922 CGCTCATGTCCGCACGTAA 60.804 57.895 0.00 0.00 0.00 3.18
508 512 2.202557 CGCTCATGTCCGCACGTA 60.203 61.111 0.00 0.00 0.00 3.57
513 517 4.505217 CAACGCGCTCATGTCCGC 62.505 66.667 5.73 18.19 46.17 5.54
514 518 3.853330 CCAACGCGCTCATGTCCG 61.853 66.667 5.73 0.00 0.00 4.79
515 519 2.434185 TCCAACGCGCTCATGTCC 60.434 61.111 5.73 0.00 0.00 4.02
516 520 2.778679 GTCCAACGCGCTCATGTC 59.221 61.111 5.73 0.00 0.00 3.06
517 521 3.112075 CGTCCAACGCGCTCATGT 61.112 61.111 5.73 0.00 33.65 3.21
532 536 0.719465 GATTTGAATCGACGGTGCGT 59.281 50.000 0.00 0.00 45.10 5.24
533 537 0.999406 AGATTTGAATCGACGGTGCG 59.001 50.000 0.00 0.00 40.35 5.34
534 538 1.999735 TGAGATTTGAATCGACGGTGC 59.000 47.619 0.00 0.00 40.35 5.01
535 539 4.394795 GTTTGAGATTTGAATCGACGGTG 58.605 43.478 0.00 0.00 40.35 4.94
536 540 3.122948 CGTTTGAGATTTGAATCGACGGT 59.877 43.478 0.00 0.00 40.35 4.83
537 541 3.483574 CCGTTTGAGATTTGAATCGACGG 60.484 47.826 19.13 19.13 41.25 4.79
538 542 3.366724 TCCGTTTGAGATTTGAATCGACG 59.633 43.478 0.00 13.04 40.35 5.12
539 543 4.151689 TGTCCGTTTGAGATTTGAATCGAC 59.848 41.667 0.00 0.15 40.35 4.20
540 544 4.311606 TGTCCGTTTGAGATTTGAATCGA 58.688 39.130 0.00 0.00 40.35 3.59
541 545 4.661993 TGTCCGTTTGAGATTTGAATCG 57.338 40.909 0.00 0.00 40.35 3.34
542 546 6.024049 GTCATGTCCGTTTGAGATTTGAATC 58.976 40.000 0.00 0.00 35.64 2.52
543 547 5.390885 CGTCATGTCCGTTTGAGATTTGAAT 60.391 40.000 0.00 0.00 0.00 2.57
544 548 4.084066 CGTCATGTCCGTTTGAGATTTGAA 60.084 41.667 0.00 0.00 0.00 2.69
545 549 3.431912 CGTCATGTCCGTTTGAGATTTGA 59.568 43.478 0.00 0.00 0.00 2.69
546 550 3.736213 CGTCATGTCCGTTTGAGATTTG 58.264 45.455 0.00 0.00 0.00 2.32
547 551 2.159627 GCGTCATGTCCGTTTGAGATTT 59.840 45.455 8.80 0.00 0.00 2.17
548 552 1.732259 GCGTCATGTCCGTTTGAGATT 59.268 47.619 8.80 0.00 0.00 2.40
549 553 1.359848 GCGTCATGTCCGTTTGAGAT 58.640 50.000 8.80 0.00 0.00 2.75
550 554 0.669318 GGCGTCATGTCCGTTTGAGA 60.669 55.000 8.80 0.00 0.00 3.27
551 555 1.787847 GGCGTCATGTCCGTTTGAG 59.212 57.895 8.80 0.00 0.00 3.02
552 556 2.024868 CGGCGTCATGTCCGTTTGA 61.025 57.895 0.00 0.00 40.72 2.69
553 557 1.955529 CTCGGCGTCATGTCCGTTTG 61.956 60.000 6.85 9.81 45.44 2.93
554 558 1.736645 CTCGGCGTCATGTCCGTTT 60.737 57.895 6.85 0.00 45.44 3.60
555 559 2.126071 CTCGGCGTCATGTCCGTT 60.126 61.111 6.85 0.00 45.44 4.44
556 560 4.796231 GCTCGGCGTCATGTCCGT 62.796 66.667 6.85 0.00 45.44 4.69
580 584 4.303993 ACCGTCGGTTTGGGTCGG 62.304 66.667 12.23 0.00 45.53 4.79
581 585 3.039588 CACCGTCGGTTTGGGTCG 61.040 66.667 15.97 0.00 31.02 4.79
582 586 2.667199 CCACCGTCGGTTTGGGTC 60.667 66.667 15.97 0.00 31.02 4.46
583 587 3.162858 TCCACCGTCGGTTTGGGT 61.163 61.111 15.97 0.00 31.02 4.51
584 588 2.667199 GTCCACCGTCGGTTTGGG 60.667 66.667 15.97 13.68 31.02 4.12
585 589 3.039588 CGTCCACCGTCGGTTTGG 61.040 66.667 15.97 14.54 31.02 3.28
586 590 3.708734 GCGTCCACCGTCGGTTTG 61.709 66.667 15.97 9.36 39.32 2.93
597 601 4.595538 AACTCCAACGCGCGTCCA 62.596 61.111 37.77 21.17 0.00 4.02
598 602 4.072088 CAACTCCAACGCGCGTCC 62.072 66.667 37.77 0.00 0.00 4.79
599 603 4.719616 GCAACTCCAACGCGCGTC 62.720 66.667 37.77 17.44 0.00 5.19
601 605 4.430423 GAGCAACTCCAACGCGCG 62.430 66.667 30.96 30.96 0.00 6.86
602 606 1.289109 TTAGAGCAACTCCAACGCGC 61.289 55.000 5.73 0.00 0.00 6.86
603 607 1.061131 CATTAGAGCAACTCCAACGCG 59.939 52.381 3.53 3.53 0.00 6.01
604 608 1.202076 GCATTAGAGCAACTCCAACGC 60.202 52.381 0.00 0.00 0.00 4.84
605 609 1.061131 CGCATTAGAGCAACTCCAACG 59.939 52.381 0.00 0.00 0.00 4.10
606 610 1.202076 GCGCATTAGAGCAACTCCAAC 60.202 52.381 0.30 0.00 40.58 3.77
607 611 1.086696 GCGCATTAGAGCAACTCCAA 58.913 50.000 0.30 0.00 40.58 3.53
608 612 2.767536 GCGCATTAGAGCAACTCCA 58.232 52.632 0.30 0.00 40.58 3.86
615 619 0.721718 ACGAAAGTGCGCATTAGAGC 59.278 50.000 15.91 0.00 46.97 4.09
628 632 4.851558 CGCTAAGAAATGGGAAAACGAAAG 59.148 41.667 0.00 0.00 0.00 2.62
629 633 4.276431 ACGCTAAGAAATGGGAAAACGAAA 59.724 37.500 0.00 0.00 0.00 3.46
630 634 3.816523 ACGCTAAGAAATGGGAAAACGAA 59.183 39.130 0.00 0.00 0.00 3.85
631 635 3.187637 CACGCTAAGAAATGGGAAAACGA 59.812 43.478 0.00 0.00 0.00 3.85
632 636 3.058501 ACACGCTAAGAAATGGGAAAACG 60.059 43.478 0.00 0.00 0.00 3.60
633 637 4.023536 TGACACGCTAAGAAATGGGAAAAC 60.024 41.667 0.00 0.00 0.00 2.43
634 638 4.138290 TGACACGCTAAGAAATGGGAAAA 58.862 39.130 0.00 0.00 0.00 2.29
635 639 3.745799 TGACACGCTAAGAAATGGGAAA 58.254 40.909 0.00 0.00 0.00 3.13
636 640 3.410631 TGACACGCTAAGAAATGGGAA 57.589 42.857 0.00 0.00 0.00 3.97
637 641 3.270027 CATGACACGCTAAGAAATGGGA 58.730 45.455 0.00 0.00 0.00 4.37
638 642 3.009723 ACATGACACGCTAAGAAATGGG 58.990 45.455 0.00 0.00 0.00 4.00
639 643 4.870426 AGTACATGACACGCTAAGAAATGG 59.130 41.667 0.00 0.00 0.00 3.16
640 644 5.348724 ACAGTACATGACACGCTAAGAAATG 59.651 40.000 0.00 0.00 0.00 2.32
641 645 5.348724 CACAGTACATGACACGCTAAGAAAT 59.651 40.000 0.00 0.00 0.00 2.17
645 649 2.345641 GCACAGTACATGACACGCTAAG 59.654 50.000 0.00 0.00 0.00 2.18
654 658 0.036105 CAGCCCAGCACAGTACATGA 60.036 55.000 0.00 0.00 0.00 3.07
659 663 0.834261 TACACCAGCCCAGCACAGTA 60.834 55.000 0.00 0.00 0.00 2.74
665 669 1.376037 GTCTGTACACCAGCCCAGC 60.376 63.158 0.00 0.00 41.25 4.85
698 702 0.595095 GGTAACGACTGGTGACGAGT 59.405 55.000 0.00 0.00 35.52 4.18
750 758 4.373116 CGTCGGGTGGTGGTGAGG 62.373 72.222 0.00 0.00 0.00 3.86
778 786 3.682292 GAGGGTGGTGATGGACGGC 62.682 68.421 0.00 0.00 0.00 5.68
780 788 2.584608 GGAGGGTGGTGATGGACG 59.415 66.667 0.00 0.00 0.00 4.79
781 789 2.584608 CGGAGGGTGGTGATGGAC 59.415 66.667 0.00 0.00 0.00 4.02
826 846 1.231928 GGAGGGTTTGGTTGGGTGT 59.768 57.895 0.00 0.00 0.00 4.16
829 849 2.282887 CGGGAGGGTTTGGTTGGG 60.283 66.667 0.00 0.00 0.00 4.12
911 959 2.457323 GGTTGGTGGGGTGAGGTGA 61.457 63.158 0.00 0.00 0.00 4.02
912 960 2.115266 GGTTGGTGGGGTGAGGTG 59.885 66.667 0.00 0.00 0.00 4.00
913 961 3.182996 GGGTTGGTGGGGTGAGGT 61.183 66.667 0.00 0.00 0.00 3.85
914 962 4.344865 CGGGTTGGTGGGGTGAGG 62.345 72.222 0.00 0.00 0.00 3.86
1050 1098 2.509561 GCGTCGAGAGAAAGGGCC 60.510 66.667 0.00 0.00 45.01 5.80
1130 1189 2.491022 GGTCCTCGACCCCATCTCG 61.491 68.421 0.00 0.00 46.19 4.04
1426 1531 1.545582 CGACCAAAAACATGGATGCCT 59.454 47.619 0.00 0.00 43.54 4.75
1433 1538 0.030101 ACGCACCGACCAAAAACATG 59.970 50.000 0.00 0.00 0.00 3.21
1435 1540 1.722677 GACGCACCGACCAAAAACA 59.277 52.632 0.00 0.00 0.00 2.83
1477 1654 4.162320 TCCTCAGCTTATAGTCCACCAAAG 59.838 45.833 0.00 0.00 0.00 2.77
1497 1678 2.034687 AGCCAGCACGCAATTCCT 59.965 55.556 0.00 0.00 0.00 3.36
1598 1818 5.316167 ACCAGCAACATCAACTGATAAGAA 58.684 37.500 0.00 0.00 33.10 2.52
1600 1820 6.741992 TTACCAGCAACATCAACTGATAAG 57.258 37.500 0.00 0.00 33.10 1.73
1663 1883 3.252701 AGAAGCAACTGATTTCACAGCTG 59.747 43.478 13.48 13.48 41.06 4.24
1664 1884 3.252701 CAGAAGCAACTGATTTCACAGCT 59.747 43.478 4.50 0.00 41.06 4.24
1675 1895 4.034163 CAGCACTGATATCAGAAGCAACTG 59.966 45.833 34.32 26.31 46.59 3.16
1676 1896 4.190001 CAGCACTGATATCAGAAGCAACT 58.810 43.478 34.32 22.27 46.59 3.16
1710 1933 1.403323 GCCAGAGTAGCAATTTCCAGC 59.597 52.381 0.00 0.00 0.00 4.85
1726 1949 0.106868 TCAGAGCATGGGATTGCCAG 60.107 55.000 2.51 0.00 43.83 4.85
1739 1962 0.669932 CTCCGGCATAGCATCAGAGC 60.670 60.000 0.00 0.00 0.00 4.09
1744 1967 1.719600 GACATCTCCGGCATAGCATC 58.280 55.000 0.00 0.00 0.00 3.91
1754 1977 2.279120 GCTCAGCCGACATCTCCG 60.279 66.667 0.00 0.00 0.00 4.63
1757 1980 2.012673 GATTTTGCTCAGCCGACATCT 58.987 47.619 0.00 0.00 0.00 2.90
1758 1981 1.739466 TGATTTTGCTCAGCCGACATC 59.261 47.619 0.00 0.00 0.00 3.06
1778 2001 0.877071 CTGAAGCAGCAACGATTGGT 59.123 50.000 0.00 0.00 43.12 3.67
1779 2002 0.877071 ACTGAAGCAGCAACGATTGG 59.123 50.000 0.00 0.00 34.37 3.16
1780 2003 2.159653 GGTACTGAAGCAGCAACGATTG 60.160 50.000 0.00 0.00 34.37 2.67
1785 2008 2.464157 AGAGGTACTGAAGCAGCAAC 57.536 50.000 0.00 0.00 41.55 4.17
1797 2020 2.964209 TCTGGGATGGATCAGAGGTAC 58.036 52.381 0.00 0.00 35.37 3.34
1798 2021 3.706389 TTCTGGGATGGATCAGAGGTA 57.294 47.619 0.00 0.00 40.55 3.08
1800 2023 3.939740 TTTTCTGGGATGGATCAGAGG 57.060 47.619 0.00 0.00 40.55 3.69
1814 2037 8.025445 CAGAACAGGGATTAACAAGATTTTCTG 58.975 37.037 0.00 0.00 31.86 3.02
1862 2085 1.676968 CCACGGGATCTGGTTGTCA 59.323 57.895 0.00 0.00 0.00 3.58
1883 2106 3.706373 TTGAGCGCAGAGTCCCCC 61.706 66.667 11.47 0.00 0.00 5.40
1886 2109 1.153745 ATCGTTGAGCGCAGAGTCC 60.154 57.895 11.47 0.00 41.07 3.85
2042 2265 2.782222 CGCGGGGTCTAGCTGCTTA 61.782 63.158 7.79 0.00 0.00 3.09
2111 2334 3.121279 CCTGAATGTAGAACACGTTGTCG 59.879 47.826 0.00 0.00 36.47 4.35
2182 2413 5.773176 ACAGTCGTCCTAATTCCCAAAATTT 59.227 36.000 0.00 0.00 0.00 1.82
2183 2414 5.321927 ACAGTCGTCCTAATTCCCAAAATT 58.678 37.500 0.00 0.00 0.00 1.82
2193 2424 5.646360 CCATTAACCAAACAGTCGTCCTAAT 59.354 40.000 0.00 0.00 0.00 1.73
2200 2431 5.385509 AAATCCCATTAACCAAACAGTCG 57.614 39.130 0.00 0.00 0.00 4.18
2254 2485 2.497675 TCACCTCTACTGAACTGCCATC 59.502 50.000 0.00 0.00 0.00 3.51
2304 2543 3.055602 TCCTGAACATGACATCTCACCTG 60.056 47.826 0.00 0.00 0.00 4.00
2348 2587 5.986741 TGAACGTATGAAGCAGACAACTAAA 59.013 36.000 0.00 0.00 0.00 1.85
2501 2762 8.434392 AGGTTAACTGGATAAAGTACAACTCAA 58.566 33.333 5.42 0.00 31.06 3.02
2555 2821 5.250543 TGAAACACTTGAGATCCCCTAATCA 59.749 40.000 0.00 0.00 0.00 2.57
2557 2823 5.251700 ACTGAAACACTTGAGATCCCCTAAT 59.748 40.000 0.00 0.00 0.00 1.73
2558 2824 4.597507 ACTGAAACACTTGAGATCCCCTAA 59.402 41.667 0.00 0.00 0.00 2.69
2600 2866 4.806286 GCAGTTTACACCCTGTCCAGTATT 60.806 45.833 0.00 0.00 0.00 1.89
2642 2908 9.869844 CGGAAGAGATTGTTTGATATTGTATTC 57.130 33.333 0.00 0.00 0.00 1.75
2651 2917 5.308825 ACTTCACGGAAGAGATTGTTTGAT 58.691 37.500 17.18 0.00 41.71 2.57
2653 2919 6.727824 ATACTTCACGGAAGAGATTGTTTG 57.272 37.500 17.18 0.00 41.71 2.93
2681 3109 5.069251 AGCCTACAGCCTGTAGTATACAAAG 59.931 44.000 25.93 12.12 46.75 2.77
2688 3116 3.053095 ACCTTAGCCTACAGCCTGTAGTA 60.053 47.826 25.93 13.09 46.68 1.82
2689 3117 2.292323 ACCTTAGCCTACAGCCTGTAGT 60.292 50.000 25.93 13.99 46.68 2.73
2693 3121 3.906720 TTTACCTTAGCCTACAGCCTG 57.093 47.619 0.00 0.00 45.47 4.85
2696 3124 6.055588 TGAATGATTTACCTTAGCCTACAGC 58.944 40.000 0.00 0.00 44.25 4.40
2701 3129 5.379706 AGCTGAATGATTTACCTTAGCCT 57.620 39.130 0.00 0.00 0.00 4.58
2704 3132 7.224753 TCGCTTAAGCTGAATGATTTACCTTAG 59.775 37.037 24.33 3.24 39.32 2.18
2705 3133 7.011109 GTCGCTTAAGCTGAATGATTTACCTTA 59.989 37.037 24.33 0.00 39.32 2.69
2722 3150 6.602179 TGATTTCACTGAATTGTCGCTTAAG 58.398 36.000 0.00 0.00 0.00 1.85
2781 3212 6.349611 CCTTGTTAGATGGACAAACAGGAATG 60.350 42.308 0.00 0.00 36.64 2.67
2813 3244 2.094545 GCTGAAACTGGCTACCCAAATG 60.095 50.000 0.00 0.00 41.58 2.32
2827 3471 3.863142 ATCAATGCCTGAAGCTGAAAC 57.137 42.857 0.00 0.00 44.23 2.78
2854 3499 6.554334 TCCATTGCTGTTCTAAAGTTACAC 57.446 37.500 0.00 0.00 0.00 2.90
2874 3519 2.143122 GAAAAGACAGTCGTGCATCCA 58.857 47.619 0.00 0.00 0.00 3.41
2882 3527 4.269363 AGTGGTTAAACGAAAAGACAGTCG 59.731 41.667 0.00 0.00 42.91 4.18
2885 3531 4.573201 TCCAGTGGTTAAACGAAAAGACAG 59.427 41.667 9.54 0.00 0.00 3.51
2924 3574 2.028876 ACCAACCTACAAGGCAACAAC 58.971 47.619 0.00 0.00 39.63 3.32
2930 3580 1.282157 AGGATCACCAACCTACAAGGC 59.718 52.381 0.00 0.00 37.51 4.35
2986 3636 0.729690 GCGGCCTTTTCTCAGTCATC 59.270 55.000 0.00 0.00 0.00 2.92
2992 3642 0.884704 GTGTGAGCGGCCTTTTCTCA 60.885 55.000 0.00 5.48 34.78 3.27
3070 3720 2.350899 TGAAAACCATTGATGCTGCG 57.649 45.000 0.00 0.00 0.00 5.18
3456 4106 7.397761 AGAATAGACAAGAGCACTTAAGGTACT 59.602 37.037 7.53 0.51 34.94 2.73
3457 4107 7.489757 CAGAATAGACAAGAGCACTTAAGGTAC 59.510 40.741 7.53 0.00 34.70 3.34
3463 4113 5.171476 GCACAGAATAGACAAGAGCACTTA 58.829 41.667 0.00 0.00 34.70 2.24
3590 4240 1.069358 GGAGAATCTGGTAGAAGCCCG 59.931 57.143 0.00 0.00 33.73 6.13
3658 4308 7.961351 ACATGGACTCATAAAACCAAATCAAA 58.039 30.769 0.00 0.00 36.00 2.69
3706 4356 3.928992 CGAACATGAAGTGCACTCATAGT 59.071 43.478 21.95 18.96 0.00 2.12
3707 4357 3.242220 GCGAACATGAAGTGCACTCATAG 60.242 47.826 21.95 18.45 0.00 2.23
3712 4362 2.455674 TAGCGAACATGAAGTGCACT 57.544 45.000 15.25 15.25 0.00 4.40
3716 4366 1.258982 GCCGATAGCGAACATGAAGTG 59.741 52.381 0.00 0.00 40.82 3.16
3717 4367 1.571919 GCCGATAGCGAACATGAAGT 58.428 50.000 0.00 0.00 40.82 3.01
3728 4378 4.179926 TGACATTCTCTATGCCGATAGC 57.820 45.455 0.00 0.00 44.14 2.97
3731 4381 8.481314 ACATATTATGACATTCTCTATGCCGAT 58.519 33.333 10.62 0.00 37.81 4.18
3772 4429 2.159448 TGCACAACAGCACAAGTGTAAC 60.159 45.455 1.79 0.00 40.11 2.50
3805 4462 7.336396 CCTCCTGCATTGAGAATATGATGATA 58.664 38.462 13.45 0.00 31.26 2.15
3811 4468 2.818432 GCCCTCCTGCATTGAGAATATG 59.182 50.000 13.45 0.00 31.26 1.78
3812 4469 2.715336 AGCCCTCCTGCATTGAGAATAT 59.285 45.455 13.45 0.00 31.26 1.28
3821 4478 2.937689 ACACCAGCCCTCCTGCAT 60.938 61.111 0.00 0.00 40.36 3.96
3831 4488 0.328258 ACCCACTTATCCACACCAGC 59.672 55.000 0.00 0.00 0.00 4.85
3913 4571 2.022934 TGCAGCTGTTTGTGATGTCAA 58.977 42.857 16.64 0.00 0.00 3.18
3998 4656 7.197703 TGGTAGTTTGCAAGTTTTTACTTAGC 58.802 34.615 4.65 0.00 0.00 3.09
4030 4688 8.614469 AAACTAGAGATAAAGATATGGCTTGC 57.386 34.615 0.00 0.00 0.00 4.01
4139 4798 5.765176 CAGCACACATGATGAAAGAAAGAA 58.235 37.500 0.00 0.00 45.46 2.52
4149 4812 1.471287 CACCCTTCAGCACACATGATG 59.529 52.381 0.00 0.00 43.91 3.07
4150 4813 1.074405 ACACCCTTCAGCACACATGAT 59.926 47.619 0.00 0.00 0.00 2.45
4151 4814 0.473755 ACACCCTTCAGCACACATGA 59.526 50.000 0.00 0.00 0.00 3.07
4152 4815 2.183478 TACACCCTTCAGCACACATG 57.817 50.000 0.00 0.00 0.00 3.21
4153 4816 2.040278 ACATACACCCTTCAGCACACAT 59.960 45.455 0.00 0.00 0.00 3.21
4155 4818 2.185004 ACATACACCCTTCAGCACAC 57.815 50.000 0.00 0.00 0.00 3.82
4157 4820 4.122776 CAGATACATACACCCTTCAGCAC 58.877 47.826 0.00 0.00 0.00 4.40
4158 4821 4.030216 TCAGATACATACACCCTTCAGCA 58.970 43.478 0.00 0.00 0.00 4.41
4159 4822 4.672587 TCAGATACATACACCCTTCAGC 57.327 45.455 0.00 0.00 0.00 4.26
4160 4823 9.784531 AATAAATCAGATACATACACCCTTCAG 57.215 33.333 0.00 0.00 0.00 3.02
4187 4850 1.541147 CCTGACAAAACGACATGGCAT 59.459 47.619 0.00 0.00 33.23 4.40
4323 4986 1.222936 CTCGAATCCCTTGCAGCCT 59.777 57.895 0.00 0.00 0.00 4.58
4359 5022 1.673009 GGCAACATTCGGGTTCGGA 60.673 57.895 0.00 0.00 36.95 4.55
4404 5067 2.996621 GTCCACGAAAGAGTCATTCTGG 59.003 50.000 15.00 15.00 35.91 3.86
4686 5352 2.453521 ACGACTACTGCTAATCACCCA 58.546 47.619 0.00 0.00 0.00 4.51
4705 5372 7.091443 ACAAGCAAGAGTAGTATGACACTAAC 58.909 38.462 0.00 0.00 41.45 2.34
4732 5399 8.443160 CACGGTGAAAAATAGCATATACTATGG 58.557 37.037 0.74 0.00 33.12 2.74
4733 5400 8.988934 ACACGGTGAAAAATAGCATATACTATG 58.011 33.333 16.29 0.00 33.12 2.23
4888 5564 1.611148 GCATTTTCCATTGGCAAGCCA 60.611 47.619 10.24 10.24 45.63 4.75
4889 5565 1.089112 GCATTTTCCATTGGCAAGCC 58.911 50.000 5.96 3.61 0.00 4.35
4890 5566 1.810959 TGCATTTTCCATTGGCAAGC 58.189 45.000 5.96 1.24 0.00 4.01
4891 5567 4.505808 TGTATGCATTTTCCATTGGCAAG 58.494 39.130 3.54 0.00 38.08 4.01
4892 5568 4.548451 TGTATGCATTTTCCATTGGCAA 57.452 36.364 3.54 0.68 38.08 4.52
4949 6158 0.888736 TTCCCTGTGTGCATGGAACG 60.889 55.000 0.00 0.00 42.05 3.95
5002 6212 7.520776 GCTGTACACTATAGATCACGATGAACT 60.521 40.741 6.78 0.00 33.88 3.01
5016 6226 3.949113 TGGTCATCACGCTGTACACTATA 59.051 43.478 0.00 0.00 0.00 1.31
5017 6227 2.758423 TGGTCATCACGCTGTACACTAT 59.242 45.455 0.00 0.00 0.00 2.12
5110 6325 1.216710 GAGTCACGGAGAAGCCCAG 59.783 63.158 0.00 0.00 0.00 4.45
5121 6336 0.792640 GTGGCAATCACAGAGTCACG 59.207 55.000 0.00 0.00 45.39 4.35
5196 6411 4.556699 CGAATTTTTGAAAACGAGGGAGCT 60.557 41.667 0.00 0.00 0.00 4.09
5313 6542 4.279169 TCTTCTGCATGGTTGGAAAGAAAG 59.721 41.667 0.00 0.00 0.00 2.62
5340 6652 6.824553 ACTTATATTTAGGAACGGAGGGAAC 58.175 40.000 0.00 0.00 0.00 3.62
5341 6653 8.731591 ATACTTATATTTAGGAACGGAGGGAA 57.268 34.615 0.00 0.00 0.00 3.97
5373 6685 7.913789 TCCATATGTAGTTTGTAGTGAAACCT 58.086 34.615 1.24 0.00 37.80 3.50
5375 6687 9.162764 ACATCCATATGTAGTTTGTAGTGAAAC 57.837 33.333 1.24 0.00 44.66 2.78
5396 6708 9.517609 CACTCTAAAATACGCCTATATACATCC 57.482 37.037 0.00 0.00 0.00 3.51
5405 6717 8.133627 GTGAATCTACACTCTAAAATACGCCTA 58.866 37.037 0.00 0.00 37.73 3.93
5406 6718 6.979238 GTGAATCTACACTCTAAAATACGCCT 59.021 38.462 0.00 0.00 37.73 5.52
5407 6719 6.979238 AGTGAATCTACACTCTAAAATACGCC 59.021 38.462 0.00 0.00 46.36 5.68
5408 6720 7.988904 AGTGAATCTACACTCTAAAATACGC 57.011 36.000 0.00 0.00 46.36 4.42
5442 6754 3.452755 TTCACTATGGAGTACATGCGG 57.547 47.619 0.00 0.00 40.82 5.69
5451 6763 9.883142 AGTCTTTTTAGAGATTTCACTATGGAG 57.117 33.333 0.00 0.00 0.00 3.86
5474 6786 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5487 6799 1.278127 CCACATGTACTCCCTCCGTTT 59.722 52.381 0.00 0.00 0.00 3.60
5645 6989 3.004315 TCCTTCGGCAGAAATGTTGTTTC 59.996 43.478 0.00 0.00 35.71 2.78
5747 7097 8.661352 GCAATTGGCAACCTATAAATTGTAAT 57.339 30.769 0.00 2.36 43.97 1.89
5765 7115 7.277539 TGTTTCTTACTTTTTGTGAGCAATTGG 59.722 33.333 7.72 0.00 34.18 3.16
5792 7142 7.227049 TCTTTCATCCAGTCAAAAATTACCC 57.773 36.000 0.00 0.00 0.00 3.69
5793 7143 8.576442 TCTTCTTTCATCCAGTCAAAAATTACC 58.424 33.333 0.00 0.00 0.00 2.85
5801 7151 4.594920 ACCTCTCTTCTTTCATCCAGTCAA 59.405 41.667 0.00 0.00 0.00 3.18
5805 7155 3.055240 AGCACCTCTCTTCTTTCATCCAG 60.055 47.826 0.00 0.00 0.00 3.86
5806 7156 2.909006 AGCACCTCTCTTCTTTCATCCA 59.091 45.455 0.00 0.00 0.00 3.41
5807 7157 3.055530 TGAGCACCTCTCTTCTTTCATCC 60.056 47.826 0.00 0.00 42.38 3.51
5839 7189 2.124736 AACATACGCCCGCATGCT 60.125 55.556 17.13 0.00 0.00 3.79
5841 7191 1.507562 TATGAACATACGCCCGCATG 58.492 50.000 0.00 0.00 0.00 4.06
5842 7192 2.076100 CATATGAACATACGCCCGCAT 58.924 47.619 0.00 0.00 0.00 4.73
5847 7197 4.445718 CACTCACTCATATGAACATACGCC 59.554 45.833 6.90 0.00 0.00 5.68
5863 7213 6.544931 TGTAAAGCTCGGTATATACACTCACT 59.455 38.462 14.70 2.64 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.