Multiple sequence alignment - TraesCS5B01G322200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G322200 chr5B 100.000 4679 0 0 1 4679 507009901 507005223 0.000000e+00 8641
1 TraesCS5B01G322200 chr5B 85.515 359 34 14 469 822 507692372 507692027 4.450000e-95 359
2 TraesCS5B01G322200 chr5D 93.145 2013 82 24 2166 4145 420920833 420918844 0.000000e+00 2902
3 TraesCS5B01G322200 chr5D 94.889 763 28 7 820 1574 420922443 420921684 0.000000e+00 1182
4 TraesCS5B01G322200 chr5D 93.164 512 26 5 4169 4679 420918846 420918343 0.000000e+00 743
5 TraesCS5B01G322200 chr5D 93.723 462 25 2 1704 2161 420921337 420920876 0.000000e+00 689
6 TraesCS5B01G322200 chr5D 90.041 482 43 5 1 479 563915472 563915951 1.850000e-173 619
7 TraesCS5B01G322200 chr5D 87.606 355 33 5 469 822 420923616 420923272 7.290000e-108 401
8 TraesCS5B01G322200 chr5D 84.571 350 37 12 472 814 287568765 287568426 9.700000e-87 331
9 TraesCS5B01G322200 chr5D 91.282 195 14 2 1510 1704 420921687 420921496 3.590000e-66 263
10 TraesCS5B01G322200 chr5A 88.928 1996 122 43 2166 4106 534274000 534272049 0.000000e+00 2370
11 TraesCS5B01G322200 chr5A 89.633 762 53 11 820 1571 534275634 534274889 0.000000e+00 946
12 TraesCS5B01G322200 chr5A 92.795 458 32 1 1704 2160 534274509 534274052 0.000000e+00 662
13 TraesCS5B01G322200 chr5A 87.167 600 41 13 4106 4679 534271973 534271384 0.000000e+00 649
14 TraesCS5B01G322200 chr5A 86.723 354 31 10 469 816 211640059 211640402 3.420000e-101 379
15 TraesCS5B01G322200 chr5A 88.945 199 21 1 1510 1708 534274888 534274691 1.300000e-60 244
16 TraesCS5B01G322200 chr2D 92.340 483 32 4 1 479 404411971 404412452 0.000000e+00 682
17 TraesCS5B01G322200 chr6D 90.852 481 40 4 1 479 193328188 193328666 3.950000e-180 641
18 TraesCS5B01G322200 chr1D 90.644 481 42 3 1 479 489241996 489242475 1.840000e-178 636
19 TraesCS5B01G322200 chr1D 90.437 481 43 3 1 479 209955929 209956408 8.540000e-177 630
20 TraesCS5B01G322200 chr1D 90.249 482 43 4 1 479 318594121 318594601 1.110000e-175 627
21 TraesCS5B01G322200 chr3D 90.021 481 42 5 1 479 185272716 185273192 6.650000e-173 617
22 TraesCS5B01G322200 chr1B 89.834 482 45 4 1 479 246745017 246745497 2.390000e-172 616
23 TraesCS5B01G322200 chr1B 89.855 483 44 5 1 479 281291537 281292018 2.390000e-172 616
24 TraesCS5B01G322200 chr1B 84.181 354 43 10 469 816 357418271 357417925 9.700000e-87 331
25 TraesCS5B01G322200 chr6A 87.744 359 33 9 468 822 585495685 585496036 4.360000e-110 409
26 TraesCS5B01G322200 chr7D 86.040 351 36 11 469 816 403802766 403802426 9.570000e-97 364
27 TraesCS5B01G322200 chr7D 85.515 359 39 11 469 823 403803184 403802835 3.440000e-96 363
28 TraesCS5B01G322200 chr3B 84.034 357 39 14 469 823 19363799 19363459 1.260000e-85 327


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G322200 chr5B 507005223 507009901 4678 True 8641.0 8641 100.0000 1 4679 1 chr5B.!!$R1 4678
1 TraesCS5B01G322200 chr5D 420918343 420923616 5273 True 1030.0 2902 92.3015 469 4679 6 chr5D.!!$R2 4210
2 TraesCS5B01G322200 chr5A 534271384 534275634 4250 True 974.2 2370 89.4936 820 4679 5 chr5A.!!$R1 3859
3 TraesCS5B01G322200 chr7D 403802426 403803184 758 True 363.5 364 85.7775 469 823 2 chr7D.!!$R1 354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.034616 GATCTGCCCTCCCGATGAAG 59.965 60.0 0.00 0.00 0.00 3.02 F
122 123 0.037232 GGAGTTGGAGTTGAGGTCGG 60.037 60.0 0.00 0.00 0.00 4.79 F
421 422 0.252197 ACGTATCAACTCCCCCAAGC 59.748 55.0 0.00 0.00 0.00 4.01 F
428 429 0.408309 AACTCCCCCAAGCTTAACCC 59.592 55.0 0.00 0.00 0.00 4.11 F
433 434 0.536724 CCCCAAGCTTAACCCATTGC 59.463 55.0 0.00 0.00 0.00 3.56 F
434 435 1.560505 CCCAAGCTTAACCCATTGCT 58.439 50.0 0.00 0.00 37.37 3.91 F
1254 2246 1.701545 GATCGAATTCGGCGCCAACA 61.702 55.0 28.98 9.78 40.29 3.33 F
2412 3757 2.290323 GGTTACAGGGACATCAGCACTT 60.290 50.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1238 2230 0.042188 CTATGTTGGCGCCGAATTCG 60.042 55.000 20.6 20.92 39.44 3.34 R
1254 2246 0.891373 CCGTGGATGGATCGCTCTAT 59.109 55.000 0.0 0.00 0.00 1.98 R
1953 3251 2.091994 CCAGGATGCCTCTCCTTCATTT 60.092 50.000 0.0 0.00 43.33 2.32 R
2369 3714 2.578714 GCCCCAATCCCGCAACAAA 61.579 57.895 0.0 0.00 0.00 2.83 R
2414 3759 5.838521 ACCATTTGAGGGAAGTAACACAAAT 59.161 36.000 0.0 0.00 38.09 2.32 R
2532 3877 4.352298 AGACCCTTTCCCTGATGATTATCC 59.648 45.833 0.0 0.00 32.09 2.59 R
3198 4552 1.945394 GCCTAGCAGAACATGACCATG 59.055 52.381 0.0 8.34 44.15 3.66 R
3697 5090 0.318445 CGTTTCTTCGTCTCCGTGGT 60.318 55.000 0.0 0.00 35.01 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.882825 AGATCTGCCCTCCCGATG 58.117 61.111 0.00 0.00 0.00 3.84
18 19 1.234239 AGATCTGCCCTCCCGATGA 59.766 57.895 0.00 0.00 0.00 2.92
19 20 0.399091 AGATCTGCCCTCCCGATGAA 60.399 55.000 0.00 0.00 0.00 2.57
20 21 0.034616 GATCTGCCCTCCCGATGAAG 59.965 60.000 0.00 0.00 0.00 3.02
21 22 0.399091 ATCTGCCCTCCCGATGAAGA 60.399 55.000 0.00 0.00 0.00 2.87
22 23 0.617535 TCTGCCCTCCCGATGAAGAA 60.618 55.000 0.00 0.00 0.00 2.52
23 24 0.462759 CTGCCCTCCCGATGAAGAAC 60.463 60.000 0.00 0.00 0.00 3.01
24 25 1.198094 TGCCCTCCCGATGAAGAACA 61.198 55.000 0.00 0.00 0.00 3.18
25 26 0.462759 GCCCTCCCGATGAAGAACAG 60.463 60.000 0.00 0.00 0.00 3.16
26 27 0.179000 CCCTCCCGATGAAGAACAGG 59.821 60.000 0.00 0.00 0.00 4.00
27 28 1.195115 CCTCCCGATGAAGAACAGGA 58.805 55.000 0.00 0.00 0.00 3.86
28 29 1.137872 CCTCCCGATGAAGAACAGGAG 59.862 57.143 0.00 0.00 37.86 3.69
29 30 2.103373 CTCCCGATGAAGAACAGGAGA 58.897 52.381 0.00 0.00 39.40 3.71
30 31 1.825474 TCCCGATGAAGAACAGGAGAC 59.175 52.381 0.00 0.00 0.00 3.36
31 32 1.469940 CCCGATGAAGAACAGGAGACG 60.470 57.143 0.00 0.00 0.00 4.18
32 33 1.469940 CCGATGAAGAACAGGAGACGG 60.470 57.143 0.00 0.00 0.00 4.79
33 34 1.646189 GATGAAGAACAGGAGACGGC 58.354 55.000 0.00 0.00 0.00 5.68
34 35 0.108615 ATGAAGAACAGGAGACGGCG 60.109 55.000 4.80 4.80 0.00 6.46
35 36 1.176619 TGAAGAACAGGAGACGGCGA 61.177 55.000 16.62 0.00 0.00 5.54
36 37 0.733223 GAAGAACAGGAGACGGCGAC 60.733 60.000 16.62 7.87 0.00 5.19
48 49 2.430921 GGCGACGGCTCCATATCG 60.431 66.667 15.00 0.00 39.81 2.92
49 50 2.335369 GCGACGGCTCCATATCGT 59.665 61.111 0.00 0.00 39.99 3.73
50 51 1.577922 GCGACGGCTCCATATCGTA 59.422 57.895 0.00 0.00 37.25 3.43
51 52 0.039798 GCGACGGCTCCATATCGTAA 60.040 55.000 0.00 0.00 37.25 3.18
52 53 1.601162 GCGACGGCTCCATATCGTAAA 60.601 52.381 0.00 0.00 37.25 2.01
53 54 2.734670 CGACGGCTCCATATCGTAAAA 58.265 47.619 0.00 0.00 37.25 1.52
54 55 2.470257 CGACGGCTCCATATCGTAAAAC 59.530 50.000 0.00 0.00 37.25 2.43
55 56 2.466846 ACGGCTCCATATCGTAAAACG 58.533 47.619 0.00 0.00 44.19 3.60
56 57 1.191647 CGGCTCCATATCGTAAAACGC 59.808 52.381 0.00 0.00 42.21 4.84
57 58 1.191647 GGCTCCATATCGTAAAACGCG 59.808 52.381 3.53 3.53 42.21 6.01
58 59 2.121786 GCTCCATATCGTAAAACGCGA 58.878 47.619 15.93 0.00 42.21 5.87
60 61 3.421826 GCTCCATATCGTAAAACGCGATG 60.422 47.826 15.93 1.81 46.74 3.84
61 62 3.967401 TCCATATCGTAAAACGCGATGA 58.033 40.909 15.93 0.34 46.74 2.92
62 63 4.361420 TCCATATCGTAAAACGCGATGAA 58.639 39.130 15.93 0.00 46.74 2.57
63 64 4.986034 TCCATATCGTAAAACGCGATGAAT 59.014 37.500 15.93 0.00 46.74 2.57
64 65 5.464057 TCCATATCGTAAAACGCGATGAATT 59.536 36.000 15.93 2.34 46.74 2.17
65 66 5.783654 CCATATCGTAAAACGCGATGAATTC 59.216 40.000 15.93 0.00 46.74 2.17
66 67 6.346598 CCATATCGTAAAACGCGATGAATTCT 60.347 38.462 15.93 0.00 46.74 2.40
67 68 4.914312 TCGTAAAACGCGATGAATTCTT 57.086 36.364 15.93 0.00 42.21 2.52
68 69 4.877942 TCGTAAAACGCGATGAATTCTTC 58.122 39.130 15.93 9.04 42.21 2.87
69 70 4.624024 TCGTAAAACGCGATGAATTCTTCT 59.376 37.500 15.93 2.79 42.21 2.85
70 71 4.950278 CGTAAAACGCGATGAATTCTTCTC 59.050 41.667 15.93 9.74 33.65 2.87
71 72 5.220228 CGTAAAACGCGATGAATTCTTCTCT 60.220 40.000 15.93 0.00 33.65 3.10
72 73 4.849111 AAACGCGATGAATTCTTCTCTC 57.151 40.909 15.93 7.18 0.00 3.20
73 74 3.791973 ACGCGATGAATTCTTCTCTCT 57.208 42.857 15.93 0.00 0.00 3.10
74 75 3.443037 ACGCGATGAATTCTTCTCTCTG 58.557 45.455 15.93 4.83 0.00 3.35
75 76 3.129462 ACGCGATGAATTCTTCTCTCTGA 59.871 43.478 15.93 0.00 0.00 3.27
76 77 4.202101 ACGCGATGAATTCTTCTCTCTGAT 60.202 41.667 15.93 0.00 0.00 2.90
77 78 4.744137 CGCGATGAATTCTTCTCTCTGATT 59.256 41.667 16.68 0.00 0.00 2.57
78 79 5.233902 CGCGATGAATTCTTCTCTCTGATTT 59.766 40.000 16.68 0.00 0.00 2.17
79 80 6.238049 CGCGATGAATTCTTCTCTCTGATTTT 60.238 38.462 16.68 0.00 0.00 1.82
80 81 7.470900 GCGATGAATTCTTCTCTCTGATTTTT 58.529 34.615 16.68 0.00 0.00 1.94
103 104 7.801716 TTTTCTCCCCGAAAGTGAATATATG 57.198 36.000 0.00 0.00 42.22 1.78
104 105 5.483685 TCTCCCCGAAAGTGAATATATGG 57.516 43.478 0.00 0.00 0.00 2.74
105 106 5.152193 TCTCCCCGAAAGTGAATATATGGA 58.848 41.667 0.00 0.00 0.00 3.41
106 107 5.246203 TCTCCCCGAAAGTGAATATATGGAG 59.754 44.000 0.00 0.00 37.57 3.86
107 108 4.905456 TCCCCGAAAGTGAATATATGGAGT 59.095 41.667 0.00 0.00 0.00 3.85
108 109 5.368523 TCCCCGAAAGTGAATATATGGAGTT 59.631 40.000 0.00 0.00 0.00 3.01
109 110 5.470098 CCCCGAAAGTGAATATATGGAGTTG 59.530 44.000 0.00 0.00 0.00 3.16
110 111 5.470098 CCCGAAAGTGAATATATGGAGTTGG 59.530 44.000 0.00 0.00 0.00 3.77
111 112 6.288294 CCGAAAGTGAATATATGGAGTTGGA 58.712 40.000 0.00 0.00 0.00 3.53
112 113 6.425114 CCGAAAGTGAATATATGGAGTTGGAG 59.575 42.308 0.00 0.00 0.00 3.86
113 114 6.986817 CGAAAGTGAATATATGGAGTTGGAGT 59.013 38.462 0.00 0.00 0.00 3.85
114 115 7.495934 CGAAAGTGAATATATGGAGTTGGAGTT 59.504 37.037 0.00 0.00 0.00 3.01
115 116 8.511604 AAAGTGAATATATGGAGTTGGAGTTG 57.488 34.615 0.00 0.00 0.00 3.16
116 117 7.437713 AGTGAATATATGGAGTTGGAGTTGA 57.562 36.000 0.00 0.00 0.00 3.18
117 118 7.504403 AGTGAATATATGGAGTTGGAGTTGAG 58.496 38.462 0.00 0.00 0.00 3.02
118 119 6.708054 GTGAATATATGGAGTTGGAGTTGAGG 59.292 42.308 0.00 0.00 0.00 3.86
119 120 6.386927 TGAATATATGGAGTTGGAGTTGAGGT 59.613 38.462 0.00 0.00 0.00 3.85
120 121 4.762289 ATATGGAGTTGGAGTTGAGGTC 57.238 45.455 0.00 0.00 0.00 3.85
121 122 0.679505 TGGAGTTGGAGTTGAGGTCG 59.320 55.000 0.00 0.00 0.00 4.79
122 123 0.037232 GGAGTTGGAGTTGAGGTCGG 60.037 60.000 0.00 0.00 0.00 4.79
123 124 0.680061 GAGTTGGAGTTGAGGTCGGT 59.320 55.000 0.00 0.00 0.00 4.69
124 125 0.393077 AGTTGGAGTTGAGGTCGGTG 59.607 55.000 0.00 0.00 0.00 4.94
125 126 0.602905 GTTGGAGTTGAGGTCGGTGG 60.603 60.000 0.00 0.00 0.00 4.61
126 127 0.761323 TTGGAGTTGAGGTCGGTGGA 60.761 55.000 0.00 0.00 0.00 4.02
127 128 1.185618 TGGAGTTGAGGTCGGTGGAG 61.186 60.000 0.00 0.00 0.00 3.86
128 129 1.079750 GAGTTGAGGTCGGTGGAGC 60.080 63.158 0.00 0.00 40.99 4.70
134 135 2.432628 GGTCGGTGGAGCTTCGTG 60.433 66.667 0.00 0.00 37.68 4.35
135 136 2.432628 GTCGGTGGAGCTTCGTGG 60.433 66.667 0.00 0.00 0.00 4.94
136 137 3.691342 TCGGTGGAGCTTCGTGGG 61.691 66.667 0.00 0.00 0.00 4.61
137 138 3.691342 CGGTGGAGCTTCGTGGGA 61.691 66.667 0.00 0.00 0.00 4.37
138 139 2.047179 GGTGGAGCTTCGTGGGAC 60.047 66.667 0.00 0.00 0.00 4.46
139 140 2.047179 GTGGAGCTTCGTGGGACC 60.047 66.667 0.00 0.00 0.00 4.46
140 141 3.319198 TGGAGCTTCGTGGGACCC 61.319 66.667 2.45 2.45 0.00 4.46
141 142 3.319198 GGAGCTTCGTGGGACCCA 61.319 66.667 9.95 9.95 0.00 4.51
150 151 3.579302 TGGGACCCACAAGCCAGG 61.579 66.667 9.95 0.00 0.00 4.45
181 182 3.953775 CCCTTGTGGTCGCCTGGT 61.954 66.667 0.00 0.00 0.00 4.00
182 183 2.669569 CCTTGTGGTCGCCTGGTG 60.670 66.667 0.00 0.00 0.00 4.17
183 184 2.669569 CTTGTGGTCGCCTGGTGG 60.670 66.667 7.51 0.00 0.00 4.61
184 185 4.263572 TTGTGGTCGCCTGGTGGG 62.264 66.667 7.51 0.00 38.36 4.61
186 187 4.265056 GTGGTCGCCTGGTGGGTT 62.265 66.667 7.51 0.00 37.43 4.11
187 188 3.948719 TGGTCGCCTGGTGGGTTC 61.949 66.667 7.51 0.00 37.43 3.62
188 189 4.717313 GGTCGCCTGGTGGGTTCC 62.717 72.222 7.51 2.14 37.43 3.62
189 190 4.717313 GTCGCCTGGTGGGTTCCC 62.717 72.222 7.51 0.12 37.43 3.97
190 191 4.974438 TCGCCTGGTGGGTTCCCT 62.974 66.667 7.51 0.00 37.43 4.20
191 192 4.410400 CGCCTGGTGGGTTCCCTC 62.410 72.222 9.43 5.45 37.43 4.30
192 193 2.936032 GCCTGGTGGGTTCCCTCT 60.936 66.667 9.43 0.00 37.43 3.69
193 194 3.081554 CCTGGTGGGTTCCCTCTG 58.918 66.667 9.43 5.79 0.00 3.35
194 195 2.606587 CCTGGTGGGTTCCCTCTGG 61.607 68.421 9.43 10.30 0.00 3.86
195 196 1.847968 CTGGTGGGTTCCCTCTGGT 60.848 63.158 9.43 0.00 0.00 4.00
196 197 1.386772 TGGTGGGTTCCCTCTGGTT 60.387 57.895 9.43 0.00 0.00 3.67
197 198 1.074951 GGTGGGTTCCCTCTGGTTG 59.925 63.158 9.43 0.00 0.00 3.77
198 199 1.423794 GGTGGGTTCCCTCTGGTTGA 61.424 60.000 9.43 0.00 0.00 3.18
199 200 0.698818 GTGGGTTCCCTCTGGTTGAT 59.301 55.000 9.43 0.00 0.00 2.57
200 201 1.075536 GTGGGTTCCCTCTGGTTGATT 59.924 52.381 9.43 0.00 0.00 2.57
201 202 1.354368 TGGGTTCCCTCTGGTTGATTC 59.646 52.381 9.43 0.00 0.00 2.52
202 203 1.636003 GGGTTCCCTCTGGTTGATTCT 59.364 52.381 0.00 0.00 0.00 2.40
203 204 2.041755 GGGTTCCCTCTGGTTGATTCTT 59.958 50.000 0.00 0.00 0.00 2.52
204 205 3.500471 GGGTTCCCTCTGGTTGATTCTTT 60.500 47.826 0.00 0.00 0.00 2.52
205 206 3.759086 GGTTCCCTCTGGTTGATTCTTTC 59.241 47.826 0.00 0.00 0.00 2.62
206 207 3.334583 TCCCTCTGGTTGATTCTTTCG 57.665 47.619 0.00 0.00 0.00 3.46
207 208 1.740025 CCCTCTGGTTGATTCTTTCGC 59.260 52.381 0.00 0.00 0.00 4.70
208 209 1.740025 CCTCTGGTTGATTCTTTCGCC 59.260 52.381 0.00 0.00 0.00 5.54
209 210 2.426522 CTCTGGTTGATTCTTTCGCCA 58.573 47.619 0.00 0.00 32.99 5.69
210 211 2.813754 CTCTGGTTGATTCTTTCGCCAA 59.186 45.455 0.00 0.00 33.42 4.52
211 212 3.420893 TCTGGTTGATTCTTTCGCCAAT 58.579 40.909 0.00 0.00 33.42 3.16
212 213 4.584874 TCTGGTTGATTCTTTCGCCAATA 58.415 39.130 0.00 0.00 33.42 1.90
213 214 5.192927 TCTGGTTGATTCTTTCGCCAATAT 58.807 37.500 0.00 0.00 33.42 1.28
214 215 5.652014 TCTGGTTGATTCTTTCGCCAATATT 59.348 36.000 0.00 0.00 33.42 1.28
215 216 6.152661 TCTGGTTGATTCTTTCGCCAATATTT 59.847 34.615 0.00 0.00 33.42 1.40
216 217 6.696411 TGGTTGATTCTTTCGCCAATATTTT 58.304 32.000 0.00 0.00 31.59 1.82
217 218 7.158021 TGGTTGATTCTTTCGCCAATATTTTT 58.842 30.769 0.00 0.00 31.59 1.94
261 262 7.761409 TCTCCATAAATTTTCAGGTCATTTCG 58.239 34.615 0.00 0.00 0.00 3.46
262 263 7.609918 TCTCCATAAATTTTCAGGTCATTTCGA 59.390 33.333 0.00 0.00 0.00 3.71
263 264 7.761409 TCCATAAATTTTCAGGTCATTTCGAG 58.239 34.615 0.00 0.00 0.00 4.04
264 265 7.609918 TCCATAAATTTTCAGGTCATTTCGAGA 59.390 33.333 0.00 0.00 0.00 4.04
265 266 8.243426 CCATAAATTTTCAGGTCATTTCGAGAA 58.757 33.333 0.00 0.00 0.00 2.87
266 267 9.065871 CATAAATTTTCAGGTCATTTCGAGAAC 57.934 33.333 0.00 0.00 0.00 3.01
267 268 6.884280 AATTTTCAGGTCATTTCGAGAACT 57.116 33.333 0.00 0.00 32.03 3.01
268 269 6.884280 ATTTTCAGGTCATTTCGAGAACTT 57.116 33.333 0.00 0.00 28.55 2.66
269 270 6.693315 TTTTCAGGTCATTTCGAGAACTTT 57.307 33.333 0.00 0.00 28.55 2.66
270 271 6.693315 TTTCAGGTCATTTCGAGAACTTTT 57.307 33.333 0.00 0.00 28.55 2.27
271 272 7.795482 TTTCAGGTCATTTCGAGAACTTTTA 57.205 32.000 0.00 0.00 28.55 1.52
272 273 7.979444 TTCAGGTCATTTCGAGAACTTTTAT 57.021 32.000 0.00 0.00 28.55 1.40
273 274 7.979444 TCAGGTCATTTCGAGAACTTTTATT 57.021 32.000 0.00 0.00 28.55 1.40
274 275 8.391075 TCAGGTCATTTCGAGAACTTTTATTT 57.609 30.769 0.00 0.00 28.55 1.40
275 276 8.504005 TCAGGTCATTTCGAGAACTTTTATTTC 58.496 33.333 0.00 0.00 28.55 2.17
276 277 8.507249 CAGGTCATTTCGAGAACTTTTATTTCT 58.493 33.333 0.00 0.00 35.96 2.52
277 278 9.720769 AGGTCATTTCGAGAACTTTTATTTCTA 57.279 29.630 0.00 0.00 33.30 2.10
278 279 9.756461 GGTCATTTCGAGAACTTTTATTTCTAC 57.244 33.333 0.00 0.00 33.30 2.59
297 298 6.079424 TCTACACAAAAATAACACCAAGGC 57.921 37.500 0.00 0.00 0.00 4.35
298 299 4.744795 ACACAAAAATAACACCAAGGCA 57.255 36.364 0.00 0.00 0.00 4.75
299 300 5.091261 ACACAAAAATAACACCAAGGCAA 57.909 34.783 0.00 0.00 0.00 4.52
300 301 5.679601 ACACAAAAATAACACCAAGGCAAT 58.320 33.333 0.00 0.00 0.00 3.56
301 302 6.118852 ACACAAAAATAACACCAAGGCAATT 58.881 32.000 0.00 0.00 0.00 2.32
302 303 6.259829 ACACAAAAATAACACCAAGGCAATTC 59.740 34.615 0.00 0.00 0.00 2.17
303 304 6.482973 CACAAAAATAACACCAAGGCAATTCT 59.517 34.615 0.00 0.00 0.00 2.40
304 305 6.482973 ACAAAAATAACACCAAGGCAATTCTG 59.517 34.615 0.00 0.00 0.00 3.02
318 319 5.320607 GCAATTCTGCTGAAAACAACTTC 57.679 39.130 10.27 0.00 45.74 3.01
319 320 4.805192 GCAATTCTGCTGAAAACAACTTCA 59.195 37.500 10.27 0.00 45.74 3.02
326 327 4.458951 CTGAAAACAACTTCAGTCCGAG 57.541 45.455 5.38 0.00 44.86 4.63
327 328 3.869065 TGAAAACAACTTCAGTCCGAGT 58.131 40.909 0.00 0.00 31.67 4.18
328 329 4.258543 TGAAAACAACTTCAGTCCGAGTT 58.741 39.130 0.00 0.00 31.67 3.01
329 330 5.421277 TGAAAACAACTTCAGTCCGAGTTA 58.579 37.500 0.00 0.00 31.67 2.24
330 331 5.522460 TGAAAACAACTTCAGTCCGAGTTAG 59.478 40.000 0.00 0.00 31.67 2.34
331 332 4.667519 AACAACTTCAGTCCGAGTTAGT 57.332 40.909 0.00 0.00 0.00 2.24
332 333 4.667519 ACAACTTCAGTCCGAGTTAGTT 57.332 40.909 0.00 0.00 0.00 2.24
333 334 4.618965 ACAACTTCAGTCCGAGTTAGTTC 58.381 43.478 0.00 0.00 0.00 3.01
334 335 4.341520 ACAACTTCAGTCCGAGTTAGTTCT 59.658 41.667 0.00 0.00 0.00 3.01
335 336 5.533903 ACAACTTCAGTCCGAGTTAGTTCTA 59.466 40.000 0.00 0.00 0.00 2.10
336 337 6.208994 ACAACTTCAGTCCGAGTTAGTTCTAT 59.791 38.462 0.00 0.00 0.00 1.98
337 338 7.392673 ACAACTTCAGTCCGAGTTAGTTCTATA 59.607 37.037 0.00 0.00 0.00 1.31
338 339 8.407064 CAACTTCAGTCCGAGTTAGTTCTATAT 58.593 37.037 0.00 0.00 0.00 0.86
339 340 9.624373 AACTTCAGTCCGAGTTAGTTCTATATA 57.376 33.333 0.00 0.00 0.00 0.86
340 341 9.624373 ACTTCAGTCCGAGTTAGTTCTATATAA 57.376 33.333 0.00 0.00 0.00 0.98
347 348 9.856488 TCCGAGTTAGTTCTATATAATTCATGC 57.144 33.333 0.00 0.00 0.00 4.06
348 349 9.639601 CCGAGTTAGTTCTATATAATTCATGCA 57.360 33.333 0.00 0.00 0.00 3.96
367 368 9.859427 TTCATGCAAATTAGAGTCCAAAATAAG 57.141 29.630 0.00 0.00 0.00 1.73
368 369 8.469200 TCATGCAAATTAGAGTCCAAAATAAGG 58.531 33.333 0.00 0.00 0.00 2.69
369 370 7.169158 TGCAAATTAGAGTCCAAAATAAGGG 57.831 36.000 0.00 0.00 0.00 3.95
370 371 6.723977 TGCAAATTAGAGTCCAAAATAAGGGT 59.276 34.615 0.00 0.00 0.00 4.34
371 372 7.891183 TGCAAATTAGAGTCCAAAATAAGGGTA 59.109 33.333 0.00 0.00 0.00 3.69
372 373 8.745590 GCAAATTAGAGTCCAAAATAAGGGTAA 58.254 33.333 0.00 0.00 0.00 2.85
377 378 9.734984 TTAGAGTCCAAAATAAGGGTAAAAGAG 57.265 33.333 0.00 0.00 0.00 2.85
378 379 7.756614 AGAGTCCAAAATAAGGGTAAAAGAGT 58.243 34.615 0.00 0.00 0.00 3.24
379 380 8.225416 AGAGTCCAAAATAAGGGTAAAAGAGTT 58.775 33.333 0.00 0.00 0.00 3.01
380 381 8.777578 AGTCCAAAATAAGGGTAAAAGAGTTT 57.222 30.769 0.00 0.00 0.00 2.66
381 382 8.638873 AGTCCAAAATAAGGGTAAAAGAGTTTG 58.361 33.333 0.00 0.00 0.00 2.93
382 383 7.870954 GTCCAAAATAAGGGTAAAAGAGTTTGG 59.129 37.037 5.94 5.94 42.38 3.28
383 384 7.785506 TCCAAAATAAGGGTAAAAGAGTTTGGA 59.214 33.333 9.94 9.94 45.56 3.53
384 385 8.425703 CCAAAATAAGGGTAAAAGAGTTTGGAA 58.574 33.333 6.34 0.00 43.24 3.53
385 386 9.825109 CAAAATAAGGGTAAAAGAGTTTGGAAA 57.175 29.630 0.00 0.00 0.00 3.13
388 389 8.777578 ATAAGGGTAAAAGAGTTTGGAAAAGT 57.222 30.769 0.00 0.00 0.00 2.66
389 390 9.871175 ATAAGGGTAAAAGAGTTTGGAAAAGTA 57.129 29.630 0.00 0.00 0.00 2.24
390 391 7.818997 AGGGTAAAAGAGTTTGGAAAAGTAG 57.181 36.000 0.00 0.00 0.00 2.57
391 392 7.580007 AGGGTAAAAGAGTTTGGAAAAGTAGA 58.420 34.615 0.00 0.00 0.00 2.59
392 393 8.225416 AGGGTAAAAGAGTTTGGAAAAGTAGAT 58.775 33.333 0.00 0.00 0.00 1.98
393 394 9.511272 GGGTAAAAGAGTTTGGAAAAGTAGATA 57.489 33.333 0.00 0.00 0.00 1.98
396 397 8.897872 AAAAGAGTTTGGAAAAGTAGATACGA 57.102 30.769 0.00 0.00 0.00 3.43
397 398 9.503399 AAAAGAGTTTGGAAAAGTAGATACGAT 57.497 29.630 0.00 0.00 0.00 3.73
398 399 8.480643 AAGAGTTTGGAAAAGTAGATACGATG 57.519 34.615 0.00 0.00 0.00 3.84
399 400 7.837863 AGAGTTTGGAAAAGTAGATACGATGA 58.162 34.615 0.00 0.00 0.00 2.92
400 401 8.311836 AGAGTTTGGAAAAGTAGATACGATGAA 58.688 33.333 0.00 0.00 0.00 2.57
401 402 8.480643 AGTTTGGAAAAGTAGATACGATGAAG 57.519 34.615 0.00 0.00 0.00 3.02
402 403 8.311836 AGTTTGGAAAAGTAGATACGATGAAGA 58.688 33.333 0.00 0.00 0.00 2.87
403 404 8.381387 GTTTGGAAAAGTAGATACGATGAAGAC 58.619 37.037 0.00 0.00 0.00 3.01
404 405 6.263344 TGGAAAAGTAGATACGATGAAGACG 58.737 40.000 0.00 0.00 0.00 4.18
405 406 6.127814 TGGAAAAGTAGATACGATGAAGACGT 60.128 38.462 0.00 0.00 45.75 4.34
414 415 4.030134 ACGATGAAGACGTATCAACTCC 57.970 45.455 7.52 0.00 42.17 3.85
415 416 3.181489 ACGATGAAGACGTATCAACTCCC 60.181 47.826 7.52 0.00 42.17 4.30
416 417 3.718815 GATGAAGACGTATCAACTCCCC 58.281 50.000 7.52 0.00 0.00 4.81
417 418 1.829222 TGAAGACGTATCAACTCCCCC 59.171 52.381 1.27 0.00 0.00 5.40
418 419 1.829222 GAAGACGTATCAACTCCCCCA 59.171 52.381 0.00 0.00 0.00 4.96
419 420 1.946984 AGACGTATCAACTCCCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
420 421 1.831736 AGACGTATCAACTCCCCCAAG 59.168 52.381 0.00 0.00 0.00 3.61
421 422 0.252197 ACGTATCAACTCCCCCAAGC 59.748 55.000 0.00 0.00 0.00 4.01
422 423 0.541863 CGTATCAACTCCCCCAAGCT 59.458 55.000 0.00 0.00 0.00 3.74
423 424 1.065418 CGTATCAACTCCCCCAAGCTT 60.065 52.381 0.00 0.00 0.00 3.74
424 425 2.169769 CGTATCAACTCCCCCAAGCTTA 59.830 50.000 0.00 0.00 0.00 3.09
425 426 3.370103 CGTATCAACTCCCCCAAGCTTAA 60.370 47.826 0.00 0.00 0.00 1.85
426 427 2.579410 TCAACTCCCCCAAGCTTAAC 57.421 50.000 0.00 0.00 0.00 2.01
427 428 1.074889 TCAACTCCCCCAAGCTTAACC 59.925 52.381 0.00 0.00 0.00 2.85
428 429 0.408309 AACTCCCCCAAGCTTAACCC 59.592 55.000 0.00 0.00 0.00 4.11
429 430 0.774491 ACTCCCCCAAGCTTAACCCA 60.774 55.000 0.00 0.00 0.00 4.51
430 431 0.631212 CTCCCCCAAGCTTAACCCAT 59.369 55.000 0.00 0.00 0.00 4.00
431 432 1.007118 CTCCCCCAAGCTTAACCCATT 59.993 52.381 0.00 0.00 0.00 3.16
432 433 1.194218 CCCCCAAGCTTAACCCATTG 58.806 55.000 0.00 0.00 0.00 2.82
433 434 0.536724 CCCCAAGCTTAACCCATTGC 59.463 55.000 0.00 0.00 0.00 3.56
434 435 1.560505 CCCAAGCTTAACCCATTGCT 58.439 50.000 0.00 0.00 37.37 3.91
435 436 1.901833 CCCAAGCTTAACCCATTGCTT 59.098 47.619 0.00 0.00 45.22 3.91
438 439 3.942130 AAGCTTAACCCATTGCTTGTC 57.058 42.857 0.00 0.00 43.09 3.18
439 440 2.171003 AGCTTAACCCATTGCTTGTCC 58.829 47.619 0.00 0.00 30.96 4.02
440 441 2.171003 GCTTAACCCATTGCTTGTCCT 58.829 47.619 0.00 0.00 0.00 3.85
441 442 2.164422 GCTTAACCCATTGCTTGTCCTC 59.836 50.000 0.00 0.00 0.00 3.71
442 443 3.420893 CTTAACCCATTGCTTGTCCTCA 58.579 45.455 0.00 0.00 0.00 3.86
443 444 2.380064 AACCCATTGCTTGTCCTCAA 57.620 45.000 0.00 0.00 0.00 3.02
454 455 4.843220 CTTGTCCTCAAGCAATTCAGTT 57.157 40.909 0.00 0.00 43.34 3.16
455 456 4.543692 CTTGTCCTCAAGCAATTCAGTTG 58.456 43.478 0.00 0.00 43.34 3.16
456 457 3.819368 TGTCCTCAAGCAATTCAGTTGA 58.181 40.909 0.00 0.00 40.37 3.18
457 458 3.565482 TGTCCTCAAGCAATTCAGTTGAC 59.435 43.478 0.00 0.00 40.37 3.18
458 459 3.565482 GTCCTCAAGCAATTCAGTTGACA 59.435 43.478 0.00 0.00 40.37 3.58
459 460 4.036734 GTCCTCAAGCAATTCAGTTGACAA 59.963 41.667 0.00 0.00 40.37 3.18
460 461 4.644234 TCCTCAAGCAATTCAGTTGACAAA 59.356 37.500 0.00 0.00 40.37 2.83
461 462 4.741676 CCTCAAGCAATTCAGTTGACAAAC 59.258 41.667 0.00 0.00 40.37 2.93
463 464 6.238731 CCTCAAGCAATTCAGTTGACAAACTA 60.239 38.462 0.00 0.00 45.07 2.24
464 465 7.094508 TCAAGCAATTCAGTTGACAAACTAA 57.905 32.000 0.00 0.00 45.07 2.24
465 466 7.542890 TCAAGCAATTCAGTTGACAAACTAAA 58.457 30.769 0.00 0.00 45.07 1.85
466 467 8.031864 TCAAGCAATTCAGTTGACAAACTAAAA 58.968 29.630 0.00 0.00 45.07 1.52
467 468 7.992180 AGCAATTCAGTTGACAAACTAAAAG 57.008 32.000 0.00 0.00 45.07 2.27
786 930 9.987272 AAAAATCTTAAACAGGGATTGAAAGAG 57.013 29.630 0.00 0.00 31.91 2.85
805 949 6.757897 AAGAGATGTTGAACAAGTGTTTGA 57.242 33.333 0.62 0.00 38.56 2.69
806 950 6.369059 AGAGATGTTGAACAAGTGTTTGAG 57.631 37.500 0.62 0.00 38.56 3.02
822 1806 7.715657 AGTGTTTGAGAAATGTTAATCAAGCA 58.284 30.769 0.00 0.00 39.53 3.91
921 1907 4.832608 CTTCGTGCCCCTACCGCC 62.833 72.222 0.00 0.00 0.00 6.13
1171 2162 5.869753 GGATTCATCCATACCGAAATCTG 57.130 43.478 0.51 0.00 46.38 2.90
1238 2230 1.852895 CCGAATCGTCCGTTCTTGATC 59.147 52.381 0.82 0.00 0.00 2.92
1254 2246 1.701545 GATCGAATTCGGCGCCAACA 61.702 55.000 28.98 9.78 40.29 3.33
1339 2334 2.353610 GGCCCCCAAGCAATGACTG 61.354 63.158 0.00 0.00 0.00 3.51
1364 2359 3.054434 TGGTTAGCCATTGTGATAGCACT 60.054 43.478 13.05 0.00 41.86 4.40
1406 2401 7.760340 AGATAGAAAAGGAGTCGATGTAACAAC 59.240 37.037 0.00 0.00 0.00 3.32
1487 2482 7.012704 GTGCAGAATTTAGAATAGCTGGAATGA 59.987 37.037 0.00 0.00 0.00 2.57
1499 2494 3.118665 AGCTGGAATGAGAGAAGCTCTTC 60.119 47.826 1.52 1.52 41.35 2.87
1557 2614 2.495270 TGTTGAAGTTTTCCTGCAAGCA 59.505 40.909 0.00 0.00 39.50 3.91
1560 2617 5.163468 TGTTGAAGTTTTCCTGCAAGCATAA 60.163 36.000 0.00 0.00 39.50 1.90
1561 2618 5.125100 TGAAGTTTTCCTGCAAGCATAAG 57.875 39.130 0.00 0.00 0.00 1.73
1592 2649 7.465353 TCAGGAATATTTGACTTGATTGCAA 57.535 32.000 0.00 0.00 0.00 4.08
1599 2656 9.715121 AATATTTGACTTGATTGCAAAATCAGT 57.285 25.926 1.71 3.30 39.98 3.41
1624 2681 8.921789 GTGACAGATCAAGAGTGTAGAGGAACT 61.922 44.444 0.00 0.00 37.99 3.01
1669 2726 9.928618 TTATCATAACCATTCCCTCAAATTACA 57.071 29.630 0.00 0.00 0.00 2.41
1671 2728 7.178573 TCATAACCATTCCCTCAAATTACACA 58.821 34.615 0.00 0.00 0.00 3.72
1715 3010 5.918011 GCTCTTAGATGTTATGGACTTCGAG 59.082 44.000 0.00 0.00 37.47 4.04
1744 3039 6.467047 CGAGTTGAATGTCTTTGTATTGCATC 59.533 38.462 0.00 0.00 0.00 3.91
1747 3042 6.441093 TGAATGTCTTTGTATTGCATCCTC 57.559 37.500 0.00 0.00 0.00 3.71
1753 3048 7.512130 TGTCTTTGTATTGCATCCTCATCTAT 58.488 34.615 0.00 0.00 0.00 1.98
1756 3051 8.212995 TCTTTGTATTGCATCCTCATCTATGAA 58.787 33.333 0.00 0.00 36.18 2.57
1762 3057 7.792374 TTGCATCCTCATCTATGAAAAGTAC 57.208 36.000 0.00 0.00 36.18 2.73
1902 3197 7.672660 AGGATCCACATACAGACGGTTTATATA 59.327 37.037 15.82 0.00 0.00 0.86
1909 3204 8.790718 ACATACAGACGGTTTATATAGATTCGT 58.209 33.333 4.96 4.96 0.00 3.85
1953 3251 5.992217 AGCGTTAATTTAAAAACAATGGGCA 59.008 32.000 0.00 0.00 0.00 5.36
2033 3331 3.139397 TCCACCCAAAACTATGAACTGGT 59.861 43.478 0.00 0.00 0.00 4.00
2045 3343 4.574599 ATGAACTGGTTGTGAGCTTTTC 57.425 40.909 0.00 0.00 0.00 2.29
2309 3654 4.970860 ACTGGGATGATAGAACCTGATG 57.029 45.455 0.00 0.00 0.00 3.07
2366 3711 7.309194 GGTGCACTAAGAAATCTGTTTGGTATT 60.309 37.037 17.98 0.00 0.00 1.89
2369 3714 9.476202 GCACTAAGAAATCTGTTTGGTATTTTT 57.524 29.630 0.00 0.00 0.00 1.94
2407 3752 3.495100 GGCTATGGTTACAGGGACATCAG 60.495 52.174 0.00 0.00 0.00 2.90
2412 3757 2.290323 GGTTACAGGGACATCAGCACTT 60.290 50.000 0.00 0.00 0.00 3.16
2413 3758 3.412386 GTTACAGGGACATCAGCACTTT 58.588 45.455 0.00 0.00 0.00 2.66
2414 3759 4.564821 GGTTACAGGGACATCAGCACTTTA 60.565 45.833 0.00 0.00 0.00 1.85
2438 3783 4.447138 TGTGTTACTTCCCTCAAATGGT 57.553 40.909 0.00 0.00 0.00 3.55
2442 3787 4.262617 GTTACTTCCCTCAAATGGTCCTC 58.737 47.826 0.00 0.00 0.00 3.71
2532 3877 5.346551 TGTTCACCGTGATATAACAACTTCG 59.653 40.000 1.09 0.00 0.00 3.79
2540 3885 7.597369 CCGTGATATAACAACTTCGGATAATCA 59.403 37.037 4.38 0.00 39.17 2.57
2549 3894 5.630415 ACTTCGGATAATCATCAGGGAAA 57.370 39.130 0.00 0.00 32.32 3.13
2556 3901 5.163045 GGATAATCATCAGGGAAAGGGTCTT 60.163 44.000 0.00 0.00 32.32 3.01
2730 4076 7.364320 GGCCCTTAAAAATCTACTATTTGCCAA 60.364 37.037 0.00 0.00 0.00 4.52
2964 4313 3.417101 TCATTTGGTGTGACGGCTTTAT 58.583 40.909 0.00 0.00 0.00 1.40
3009 4358 5.830457 TGAGTTGTAGAGATGCTAGCAGTAT 59.170 40.000 23.89 12.47 0.00 2.12
3015 4364 4.214310 AGAGATGCTAGCAGTATCACAGT 58.786 43.478 23.89 2.02 39.41 3.55
3043 4397 3.182887 AGATGGAGACTGGTTGAGAGT 57.817 47.619 0.00 0.00 0.00 3.24
3055 4409 8.697292 AGACTGGTTGAGAGTTATATTTAGGTC 58.303 37.037 0.00 0.00 0.00 3.85
3198 4552 5.835257 TGCAACCGGTAGTGTTAGTATATC 58.165 41.667 8.00 0.00 0.00 1.63
3377 4731 9.706691 TGTTAGTTAGTTTTCTGTTCAGATAGG 57.293 33.333 3.28 0.00 0.00 2.57
3378 4732 9.708092 GTTAGTTAGTTTTCTGTTCAGATAGGT 57.292 33.333 3.28 0.00 0.00 3.08
3381 4735 9.628500 AGTTAGTTTTCTGTTCAGATAGGTTTT 57.372 29.630 3.28 0.00 0.00 2.43
3426 4780 1.234615 ACACGCCGAACCAATTGGAG 61.235 55.000 31.22 19.42 38.94 3.86
3433 4787 3.626930 CCGAACCAATTGGAGGGATAAA 58.373 45.455 31.22 0.00 38.94 1.40
3520 4908 7.962964 ATGTTCTCGTTCTACTTTTGATTGA 57.037 32.000 0.00 0.00 0.00 2.57
3581 4970 1.210478 CCCCTTCCTGTACTGACCATG 59.790 57.143 0.60 0.00 0.00 3.66
3585 4974 2.167219 CCTGTACTGACCATGCGCG 61.167 63.158 0.00 0.00 0.00 6.86
3686 5079 2.738521 CGCCAACTGACGGACCAG 60.739 66.667 0.00 0.00 39.93 4.00
3697 5090 0.472471 ACGGACCAGGAAAGAAAGCA 59.528 50.000 0.00 0.00 0.00 3.91
3776 5170 7.128728 TCCTCTTGGTCCAATAATCCTCATTTA 59.871 37.037 4.34 0.00 34.23 1.40
3974 5393 7.075741 GGATATGTGTGAATAATAAACACCGC 58.924 38.462 2.99 0.00 42.81 5.68
3991 5410 4.530857 CGGTCCGTGGGATCCAGC 62.531 72.222 15.23 4.31 32.34 4.85
4011 5435 2.352127 GCTGAAATCCACTTGGCTGTTC 60.352 50.000 0.00 0.00 34.44 3.18
4012 5436 3.152341 CTGAAATCCACTTGGCTGTTCT 58.848 45.455 0.00 0.00 34.44 3.01
4013 5437 2.886523 TGAAATCCACTTGGCTGTTCTG 59.113 45.455 0.00 0.00 34.44 3.02
4014 5438 2.664402 AATCCACTTGGCTGTTCTGT 57.336 45.000 0.00 0.00 34.44 3.41
4015 5439 2.664402 ATCCACTTGGCTGTTCTGTT 57.336 45.000 0.00 0.00 34.44 3.16
4125 5626 0.321210 TACACACATCCCAACAGGCG 60.321 55.000 0.00 0.00 34.51 5.52
4148 5649 4.462483 GCCAACAACCATATCAAGAAAGGA 59.538 41.667 0.00 0.00 0.00 3.36
4153 5654 9.492973 CAACAACCATATCAAGAAAGGAAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
4213 5714 1.080025 GTCGGAACTTCCCACCTCG 60.080 63.158 1.97 0.00 31.13 4.63
4229 5730 2.752238 CGGGCTCAGAGACGACCT 60.752 66.667 0.00 0.00 0.00 3.85
4246 5747 1.018226 CCTCAGCAGCCAAGACTTCG 61.018 60.000 0.00 0.00 0.00 3.79
4364 5866 3.165160 AACAGGTCTCGCTTGCGGT 62.165 57.895 15.10 1.03 0.00 5.68
4433 5939 1.009335 CGTTGGATCCATGCATGCG 60.009 57.895 21.69 13.15 0.00 4.73
4447 5953 3.001902 ATGCGTCCGACGGTGACAT 62.002 57.895 21.84 13.30 42.82 3.06
4461 5967 2.219458 GTGACATGCTCCCATCTGATG 58.781 52.381 10.71 10.71 0.00 3.07
4462 5968 2.121129 TGACATGCTCCCATCTGATGA 58.879 47.619 18.92 0.00 0.00 2.92
4558 6068 1.212616 CTCATCCAAAGATCGACGGC 58.787 55.000 0.00 0.00 0.00 5.68
4589 6113 1.406887 GCCGTTGATAGAGGCCTTTGA 60.407 52.381 6.77 0.00 44.80 2.69
4658 6184 2.668632 CTCCTGCCCGGTTGCTTA 59.331 61.111 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.399091 TTCATCGGGAGGGCAGATCT 60.399 55.000 0.00 0.00 0.00 2.75
1 2 0.034616 CTTCATCGGGAGGGCAGATC 59.965 60.000 0.00 0.00 0.00 2.75
2 3 0.399091 TCTTCATCGGGAGGGCAGAT 60.399 55.000 0.00 0.00 0.00 2.90
3 4 0.617535 TTCTTCATCGGGAGGGCAGA 60.618 55.000 0.00 0.00 0.00 4.26
4 5 0.462759 GTTCTTCATCGGGAGGGCAG 60.463 60.000 0.00 0.00 0.00 4.85
5 6 1.198094 TGTTCTTCATCGGGAGGGCA 61.198 55.000 0.00 0.00 0.00 5.36
6 7 0.462759 CTGTTCTTCATCGGGAGGGC 60.463 60.000 0.00 0.00 0.00 5.19
7 8 0.179000 CCTGTTCTTCATCGGGAGGG 59.821 60.000 0.00 0.00 32.26 4.30
8 9 1.195115 TCCTGTTCTTCATCGGGAGG 58.805 55.000 0.00 0.00 34.60 4.30
9 10 2.593346 CTCCTGTTCTTCATCGGGAG 57.407 55.000 5.78 5.78 46.40 4.30
10 11 1.825474 GTCTCCTGTTCTTCATCGGGA 59.175 52.381 0.00 0.00 37.52 5.14
11 12 1.469940 CGTCTCCTGTTCTTCATCGGG 60.470 57.143 0.00 0.00 0.00 5.14
12 13 1.469940 CCGTCTCCTGTTCTTCATCGG 60.470 57.143 0.00 0.00 0.00 4.18
13 14 1.914634 CCGTCTCCTGTTCTTCATCG 58.085 55.000 0.00 0.00 0.00 3.84
14 15 1.646189 GCCGTCTCCTGTTCTTCATC 58.354 55.000 0.00 0.00 0.00 2.92
15 16 0.108615 CGCCGTCTCCTGTTCTTCAT 60.109 55.000 0.00 0.00 0.00 2.57
16 17 1.176619 TCGCCGTCTCCTGTTCTTCA 61.177 55.000 0.00 0.00 0.00 3.02
17 18 0.733223 GTCGCCGTCTCCTGTTCTTC 60.733 60.000 0.00 0.00 0.00 2.87
18 19 1.289380 GTCGCCGTCTCCTGTTCTT 59.711 57.895 0.00 0.00 0.00 2.52
19 20 2.963371 GTCGCCGTCTCCTGTTCT 59.037 61.111 0.00 0.00 0.00 3.01
20 21 2.504244 CGTCGCCGTCTCCTGTTC 60.504 66.667 0.00 0.00 0.00 3.18
21 22 4.052229 CCGTCGCCGTCTCCTGTT 62.052 66.667 0.00 0.00 0.00 3.16
28 29 3.208884 ATATGGAGCCGTCGCCGTC 62.209 63.158 0.00 0.00 34.60 4.79
29 30 3.208884 GATATGGAGCCGTCGCCGT 62.209 63.158 0.00 0.00 34.60 5.68
30 31 2.430921 GATATGGAGCCGTCGCCG 60.431 66.667 0.00 0.00 34.60 6.46
31 32 1.859427 TACGATATGGAGCCGTCGCC 61.859 60.000 0.00 0.00 37.59 5.54
32 33 0.039798 TTACGATATGGAGCCGTCGC 60.040 55.000 0.00 0.00 37.59 5.19
33 34 2.410785 TTTACGATATGGAGCCGTCG 57.589 50.000 0.00 7.07 37.69 5.12
34 35 2.470257 CGTTTTACGATATGGAGCCGTC 59.530 50.000 0.00 0.00 46.05 4.79
35 36 2.466846 CGTTTTACGATATGGAGCCGT 58.533 47.619 0.00 0.00 46.05 5.68
36 37 1.191647 GCGTTTTACGATATGGAGCCG 59.808 52.381 3.04 0.00 46.05 5.52
37 38 1.191647 CGCGTTTTACGATATGGAGCC 59.808 52.381 0.00 0.00 46.05 4.70
38 39 2.121786 TCGCGTTTTACGATATGGAGC 58.878 47.619 5.77 0.00 46.05 4.70
46 47 4.877942 GAAGAATTCATCGCGTTTTACGA 58.122 39.130 5.77 0.00 44.67 3.43
78 79 7.284489 CCATATATTCACTTTCGGGGAGAAAAA 59.716 37.037 0.00 0.00 46.98 1.94
79 80 6.770785 CCATATATTCACTTTCGGGGAGAAAA 59.229 38.462 0.00 0.00 46.98 2.29
80 81 6.100569 TCCATATATTCACTTTCGGGGAGAAA 59.899 38.462 0.00 0.00 45.76 2.52
81 82 5.605069 TCCATATATTCACTTTCGGGGAGAA 59.395 40.000 0.00 0.00 37.01 2.87
82 83 5.152193 TCCATATATTCACTTTCGGGGAGA 58.848 41.667 0.00 0.00 0.00 3.71
83 84 5.012148 ACTCCATATATTCACTTTCGGGGAG 59.988 44.000 0.00 0.00 42.90 4.30
84 85 4.905456 ACTCCATATATTCACTTTCGGGGA 59.095 41.667 0.00 0.00 0.00 4.81
85 86 5.228945 ACTCCATATATTCACTTTCGGGG 57.771 43.478 0.00 0.00 0.00 5.73
86 87 5.470098 CCAACTCCATATATTCACTTTCGGG 59.530 44.000 0.00 0.00 0.00 5.14
87 88 6.288294 TCCAACTCCATATATTCACTTTCGG 58.712 40.000 0.00 0.00 0.00 4.30
88 89 6.986817 ACTCCAACTCCATATATTCACTTTCG 59.013 38.462 0.00 0.00 0.00 3.46
89 90 8.616076 CAACTCCAACTCCATATATTCACTTTC 58.384 37.037 0.00 0.00 0.00 2.62
90 91 8.328758 TCAACTCCAACTCCATATATTCACTTT 58.671 33.333 0.00 0.00 0.00 2.66
91 92 7.861629 TCAACTCCAACTCCATATATTCACTT 58.138 34.615 0.00 0.00 0.00 3.16
92 93 7.419518 CCTCAACTCCAACTCCATATATTCACT 60.420 40.741 0.00 0.00 0.00 3.41
93 94 6.708054 CCTCAACTCCAACTCCATATATTCAC 59.292 42.308 0.00 0.00 0.00 3.18
94 95 6.386927 ACCTCAACTCCAACTCCATATATTCA 59.613 38.462 0.00 0.00 0.00 2.57
95 96 6.831976 ACCTCAACTCCAACTCCATATATTC 58.168 40.000 0.00 0.00 0.00 1.75
96 97 6.463049 CGACCTCAACTCCAACTCCATATATT 60.463 42.308 0.00 0.00 0.00 1.28
97 98 5.011125 CGACCTCAACTCCAACTCCATATAT 59.989 44.000 0.00 0.00 0.00 0.86
98 99 4.341235 CGACCTCAACTCCAACTCCATATA 59.659 45.833 0.00 0.00 0.00 0.86
99 100 3.133003 CGACCTCAACTCCAACTCCATAT 59.867 47.826 0.00 0.00 0.00 1.78
100 101 2.496070 CGACCTCAACTCCAACTCCATA 59.504 50.000 0.00 0.00 0.00 2.74
101 102 1.276421 CGACCTCAACTCCAACTCCAT 59.724 52.381 0.00 0.00 0.00 3.41
102 103 0.679505 CGACCTCAACTCCAACTCCA 59.320 55.000 0.00 0.00 0.00 3.86
103 104 0.037232 CCGACCTCAACTCCAACTCC 60.037 60.000 0.00 0.00 0.00 3.85
104 105 0.680061 ACCGACCTCAACTCCAACTC 59.320 55.000 0.00 0.00 0.00 3.01
105 106 0.393077 CACCGACCTCAACTCCAACT 59.607 55.000 0.00 0.00 0.00 3.16
106 107 0.602905 CCACCGACCTCAACTCCAAC 60.603 60.000 0.00 0.00 0.00 3.77
107 108 0.761323 TCCACCGACCTCAACTCCAA 60.761 55.000 0.00 0.00 0.00 3.53
108 109 1.152419 TCCACCGACCTCAACTCCA 60.152 57.895 0.00 0.00 0.00 3.86
109 110 1.592223 CTCCACCGACCTCAACTCC 59.408 63.158 0.00 0.00 0.00 3.85
110 111 1.079750 GCTCCACCGACCTCAACTC 60.080 63.158 0.00 0.00 0.00 3.01
111 112 1.122019 AAGCTCCACCGACCTCAACT 61.122 55.000 0.00 0.00 0.00 3.16
112 113 0.670854 GAAGCTCCACCGACCTCAAC 60.671 60.000 0.00 0.00 0.00 3.18
113 114 1.671742 GAAGCTCCACCGACCTCAA 59.328 57.895 0.00 0.00 0.00 3.02
114 115 2.636412 CGAAGCTCCACCGACCTCA 61.636 63.158 0.00 0.00 0.00 3.86
115 116 2.182030 CGAAGCTCCACCGACCTC 59.818 66.667 0.00 0.00 0.00 3.85
116 117 2.600769 ACGAAGCTCCACCGACCT 60.601 61.111 0.00 0.00 0.00 3.85
117 118 2.432628 CACGAAGCTCCACCGACC 60.433 66.667 0.00 0.00 0.00 4.79
118 119 2.432628 CCACGAAGCTCCACCGAC 60.433 66.667 0.00 0.00 0.00 4.79
119 120 3.691342 CCCACGAAGCTCCACCGA 61.691 66.667 0.00 0.00 0.00 4.69
120 121 3.691342 TCCCACGAAGCTCCACCG 61.691 66.667 0.00 0.00 0.00 4.94
121 122 2.047179 GTCCCACGAAGCTCCACC 60.047 66.667 0.00 0.00 0.00 4.61
122 123 2.047179 GGTCCCACGAAGCTCCAC 60.047 66.667 0.00 0.00 0.00 4.02
123 124 3.319198 GGGTCCCACGAAGCTCCA 61.319 66.667 1.78 0.00 0.00 3.86
124 125 3.319198 TGGGTCCCACGAAGCTCC 61.319 66.667 6.47 0.00 0.00 4.70
125 126 2.047179 GTGGGTCCCACGAAGCTC 60.047 66.667 25.42 0.49 44.95 4.09
133 134 3.579302 CCTGGCTTGTGGGTCCCA 61.579 66.667 6.47 6.47 0.00 4.37
134 135 4.366684 CCCTGGCTTGTGGGTCCC 62.367 72.222 0.00 0.00 38.65 4.46
135 136 4.366684 CCCCTGGCTTGTGGGTCC 62.367 72.222 0.00 0.00 41.82 4.46
164 165 3.953775 ACCAGGCGACCACAAGGG 61.954 66.667 0.00 0.00 44.81 3.95
165 166 2.669569 CACCAGGCGACCACAAGG 60.670 66.667 0.00 0.00 42.21 3.61
166 167 2.669569 CCACCAGGCGACCACAAG 60.670 66.667 0.00 0.00 0.00 3.16
167 168 4.263572 CCCACCAGGCGACCACAA 62.264 66.667 0.00 0.00 0.00 3.33
169 170 4.265056 AACCCACCAGGCGACCAC 62.265 66.667 0.00 0.00 40.58 4.16
170 171 3.948719 GAACCCACCAGGCGACCA 61.949 66.667 0.00 0.00 40.58 4.02
171 172 4.717313 GGAACCCACCAGGCGACC 62.717 72.222 0.00 0.00 40.58 4.79
184 185 3.437049 CGAAAGAATCAACCAGAGGGAAC 59.563 47.826 0.00 0.00 38.05 3.62
185 186 3.674997 CGAAAGAATCAACCAGAGGGAA 58.325 45.455 0.00 0.00 38.05 3.97
186 187 2.615493 GCGAAAGAATCAACCAGAGGGA 60.615 50.000 0.00 0.00 38.05 4.20
187 188 1.740025 GCGAAAGAATCAACCAGAGGG 59.260 52.381 0.00 0.00 41.29 4.30
188 189 1.740025 GGCGAAAGAATCAACCAGAGG 59.260 52.381 0.00 0.00 0.00 3.69
189 190 2.426522 TGGCGAAAGAATCAACCAGAG 58.573 47.619 0.00 0.00 31.89 3.35
190 191 2.559698 TGGCGAAAGAATCAACCAGA 57.440 45.000 0.00 0.00 31.89 3.86
191 192 3.855689 ATTGGCGAAAGAATCAACCAG 57.144 42.857 0.00 0.00 35.83 4.00
192 193 5.913137 AATATTGGCGAAAGAATCAACCA 57.087 34.783 0.00 0.00 33.31 3.67
193 194 7.595311 AAAAATATTGGCGAAAGAATCAACC 57.405 32.000 0.00 0.00 0.00 3.77
235 236 8.243426 CGAAATGACCTGAAAATTTATGGAGAA 58.757 33.333 9.95 0.00 0.00 2.87
236 237 7.609918 TCGAAATGACCTGAAAATTTATGGAGA 59.390 33.333 9.95 0.00 0.00 3.71
237 238 7.761409 TCGAAATGACCTGAAAATTTATGGAG 58.239 34.615 9.95 0.00 0.00 3.86
238 239 7.609918 TCTCGAAATGACCTGAAAATTTATGGA 59.390 33.333 9.95 0.00 0.00 3.41
239 240 7.761409 TCTCGAAATGACCTGAAAATTTATGG 58.239 34.615 0.00 0.00 0.00 2.74
240 241 9.065871 GTTCTCGAAATGACCTGAAAATTTATG 57.934 33.333 0.00 0.00 0.00 1.90
241 242 9.014297 AGTTCTCGAAATGACCTGAAAATTTAT 57.986 29.630 0.00 0.00 0.00 1.40
242 243 8.391075 AGTTCTCGAAATGACCTGAAAATTTA 57.609 30.769 0.00 0.00 0.00 1.40
243 244 7.277174 AGTTCTCGAAATGACCTGAAAATTT 57.723 32.000 0.00 0.00 0.00 1.82
244 245 6.884280 AGTTCTCGAAATGACCTGAAAATT 57.116 33.333 0.00 0.00 0.00 1.82
245 246 6.884280 AAGTTCTCGAAATGACCTGAAAAT 57.116 33.333 0.00 0.00 0.00 1.82
246 247 6.693315 AAAGTTCTCGAAATGACCTGAAAA 57.307 33.333 0.00 0.00 0.00 2.29
247 248 6.693315 AAAAGTTCTCGAAATGACCTGAAA 57.307 33.333 0.00 0.00 0.00 2.69
248 249 7.979444 ATAAAAGTTCTCGAAATGACCTGAA 57.021 32.000 0.00 0.00 0.00 3.02
249 250 7.979444 AATAAAAGTTCTCGAAATGACCTGA 57.021 32.000 0.00 0.00 0.00 3.86
250 251 8.507249 AGAAATAAAAGTTCTCGAAATGACCTG 58.493 33.333 0.00 0.00 29.04 4.00
251 252 8.622948 AGAAATAAAAGTTCTCGAAATGACCT 57.377 30.769 0.00 0.00 29.04 3.85
252 253 9.756461 GTAGAAATAAAAGTTCTCGAAATGACC 57.244 33.333 0.00 0.00 36.69 4.02
271 272 7.655732 GCCTTGGTGTTATTTTTGTGTAGAAAT 59.344 33.333 0.00 0.00 0.00 2.17
272 273 6.981559 GCCTTGGTGTTATTTTTGTGTAGAAA 59.018 34.615 0.00 0.00 0.00 2.52
273 274 6.096987 TGCCTTGGTGTTATTTTTGTGTAGAA 59.903 34.615 0.00 0.00 0.00 2.10
274 275 5.594725 TGCCTTGGTGTTATTTTTGTGTAGA 59.405 36.000 0.00 0.00 0.00 2.59
275 276 5.837437 TGCCTTGGTGTTATTTTTGTGTAG 58.163 37.500 0.00 0.00 0.00 2.74
276 277 5.854010 TGCCTTGGTGTTATTTTTGTGTA 57.146 34.783 0.00 0.00 0.00 2.90
277 278 4.744795 TGCCTTGGTGTTATTTTTGTGT 57.255 36.364 0.00 0.00 0.00 3.72
278 279 6.482973 AGAATTGCCTTGGTGTTATTTTTGTG 59.517 34.615 0.00 0.00 0.00 3.33
279 280 6.482973 CAGAATTGCCTTGGTGTTATTTTTGT 59.517 34.615 0.00 0.00 0.00 2.83
280 281 6.566376 GCAGAATTGCCTTGGTGTTATTTTTG 60.566 38.462 0.00 0.00 44.74 2.44
281 282 5.469760 GCAGAATTGCCTTGGTGTTATTTTT 59.530 36.000 0.00 0.00 44.74 1.94
282 283 4.996758 GCAGAATTGCCTTGGTGTTATTTT 59.003 37.500 0.00 0.00 44.74 1.82
283 284 4.568956 GCAGAATTGCCTTGGTGTTATTT 58.431 39.130 0.00 0.00 44.74 1.40
284 285 4.192429 GCAGAATTGCCTTGGTGTTATT 57.808 40.909 0.00 0.00 44.74 1.40
285 286 3.874392 GCAGAATTGCCTTGGTGTTAT 57.126 42.857 0.00 0.00 44.74 1.89
297 298 6.506464 CTGAAGTTGTTTTCAGCAGAATTG 57.494 37.500 3.15 0.00 45.21 2.32
306 307 3.869065 ACTCGGACTGAAGTTGTTTTCA 58.131 40.909 0.00 0.00 35.83 2.69
307 308 4.877323 AACTCGGACTGAAGTTGTTTTC 57.123 40.909 0.00 0.00 0.00 2.29
308 309 5.425630 ACTAACTCGGACTGAAGTTGTTTT 58.574 37.500 8.51 0.00 0.00 2.43
309 310 5.019785 ACTAACTCGGACTGAAGTTGTTT 57.980 39.130 8.51 0.00 0.00 2.83
310 311 4.667519 ACTAACTCGGACTGAAGTTGTT 57.332 40.909 8.51 2.03 0.00 2.83
311 312 4.341520 AGAACTAACTCGGACTGAAGTTGT 59.658 41.667 4.86 0.00 0.00 3.32
312 313 4.872664 AGAACTAACTCGGACTGAAGTTG 58.127 43.478 4.86 1.77 0.00 3.16
313 314 6.837471 ATAGAACTAACTCGGACTGAAGTT 57.163 37.500 0.37 0.37 0.00 2.66
314 315 9.624373 TTATATAGAACTAACTCGGACTGAAGT 57.376 33.333 0.00 0.00 0.00 3.01
321 322 9.856488 GCATGAATTATATAGAACTAACTCGGA 57.144 33.333 0.00 0.00 0.00 4.55
322 323 9.639601 TGCATGAATTATATAGAACTAACTCGG 57.360 33.333 0.00 0.00 0.00 4.63
341 342 9.859427 CTTATTTTGGACTCTAATTTGCATGAA 57.141 29.630 0.00 0.00 0.00 2.57
342 343 8.469200 CCTTATTTTGGACTCTAATTTGCATGA 58.531 33.333 0.00 0.00 0.00 3.07
343 344 7.707893 CCCTTATTTTGGACTCTAATTTGCATG 59.292 37.037 0.00 0.00 0.00 4.06
344 345 7.400052 ACCCTTATTTTGGACTCTAATTTGCAT 59.600 33.333 0.00 0.00 0.00 3.96
345 346 6.723977 ACCCTTATTTTGGACTCTAATTTGCA 59.276 34.615 0.00 0.00 0.00 4.08
346 347 7.170393 ACCCTTATTTTGGACTCTAATTTGC 57.830 36.000 0.00 0.00 0.00 3.68
351 352 9.734984 CTCTTTTACCCTTATTTTGGACTCTAA 57.265 33.333 0.00 0.00 0.00 2.10
352 353 8.887393 ACTCTTTTACCCTTATTTTGGACTCTA 58.113 33.333 0.00 0.00 0.00 2.43
353 354 7.756614 ACTCTTTTACCCTTATTTTGGACTCT 58.243 34.615 0.00 0.00 0.00 3.24
354 355 7.997773 ACTCTTTTACCCTTATTTTGGACTC 57.002 36.000 0.00 0.00 0.00 3.36
355 356 8.638873 CAAACTCTTTTACCCTTATTTTGGACT 58.361 33.333 0.00 0.00 0.00 3.85
356 357 7.870954 CCAAACTCTTTTACCCTTATTTTGGAC 59.129 37.037 3.65 0.00 41.94 4.02
357 358 7.785506 TCCAAACTCTTTTACCCTTATTTTGGA 59.214 33.333 7.68 7.68 44.43 3.53
358 359 7.958088 TCCAAACTCTTTTACCCTTATTTTGG 58.042 34.615 0.00 0.00 41.13 3.28
359 360 9.825109 TTTCCAAACTCTTTTACCCTTATTTTG 57.175 29.630 0.00 0.00 0.00 2.44
362 363 9.209048 ACTTTTCCAAACTCTTTTACCCTTATT 57.791 29.630 0.00 0.00 0.00 1.40
363 364 8.777578 ACTTTTCCAAACTCTTTTACCCTTAT 57.222 30.769 0.00 0.00 0.00 1.73
364 365 9.346005 CTACTTTTCCAAACTCTTTTACCCTTA 57.654 33.333 0.00 0.00 0.00 2.69
365 366 8.057011 TCTACTTTTCCAAACTCTTTTACCCTT 58.943 33.333 0.00 0.00 0.00 3.95
366 367 7.580007 TCTACTTTTCCAAACTCTTTTACCCT 58.420 34.615 0.00 0.00 0.00 4.34
367 368 7.812690 TCTACTTTTCCAAACTCTTTTACCC 57.187 36.000 0.00 0.00 0.00 3.69
370 371 9.985730 TCGTATCTACTTTTCCAAACTCTTTTA 57.014 29.630 0.00 0.00 0.00 1.52
371 372 8.897872 TCGTATCTACTTTTCCAAACTCTTTT 57.102 30.769 0.00 0.00 0.00 2.27
372 373 8.936864 CATCGTATCTACTTTTCCAAACTCTTT 58.063 33.333 0.00 0.00 0.00 2.52
373 374 8.311836 TCATCGTATCTACTTTTCCAAACTCTT 58.688 33.333 0.00 0.00 0.00 2.85
374 375 7.837863 TCATCGTATCTACTTTTCCAAACTCT 58.162 34.615 0.00 0.00 0.00 3.24
375 376 8.475331 TTCATCGTATCTACTTTTCCAAACTC 57.525 34.615 0.00 0.00 0.00 3.01
376 377 8.311836 TCTTCATCGTATCTACTTTTCCAAACT 58.688 33.333 0.00 0.00 0.00 2.66
377 378 8.381387 GTCTTCATCGTATCTACTTTTCCAAAC 58.619 37.037 0.00 0.00 0.00 2.93
378 379 7.274904 CGTCTTCATCGTATCTACTTTTCCAAA 59.725 37.037 0.00 0.00 0.00 3.28
379 380 6.750501 CGTCTTCATCGTATCTACTTTTCCAA 59.249 38.462 0.00 0.00 0.00 3.53
380 381 6.127814 ACGTCTTCATCGTATCTACTTTTCCA 60.128 38.462 0.00 0.00 39.78 3.53
381 382 6.264088 ACGTCTTCATCGTATCTACTTTTCC 58.736 40.000 0.00 0.00 39.78 3.13
392 393 4.036027 GGGAGTTGATACGTCTTCATCGTA 59.964 45.833 0.00 0.00 45.41 3.43
393 394 3.181489 GGGAGTTGATACGTCTTCATCGT 60.181 47.826 0.00 0.00 43.86 3.73
394 395 3.372954 GGGAGTTGATACGTCTTCATCG 58.627 50.000 0.00 0.00 0.00 3.84
395 396 3.492829 GGGGGAGTTGATACGTCTTCATC 60.493 52.174 0.00 0.00 0.00 2.92
396 397 2.434702 GGGGGAGTTGATACGTCTTCAT 59.565 50.000 0.00 0.00 0.00 2.57
397 398 1.829222 GGGGGAGTTGATACGTCTTCA 59.171 52.381 0.00 0.00 0.00 3.02
398 399 1.829222 TGGGGGAGTTGATACGTCTTC 59.171 52.381 0.00 0.00 0.00 2.87
399 400 1.946984 TGGGGGAGTTGATACGTCTT 58.053 50.000 0.00 0.00 0.00 3.01
400 401 1.831736 CTTGGGGGAGTTGATACGTCT 59.168 52.381 0.00 0.00 0.00 4.18
401 402 1.742750 GCTTGGGGGAGTTGATACGTC 60.743 57.143 0.00 0.00 0.00 4.34
402 403 0.252197 GCTTGGGGGAGTTGATACGT 59.748 55.000 0.00 0.00 0.00 3.57
403 404 0.541863 AGCTTGGGGGAGTTGATACG 59.458 55.000 0.00 0.00 0.00 3.06
404 405 2.808906 AAGCTTGGGGGAGTTGATAC 57.191 50.000 0.00 0.00 0.00 2.24
405 406 3.053917 GGTTAAGCTTGGGGGAGTTGATA 60.054 47.826 9.86 0.00 0.00 2.15
406 407 2.291605 GGTTAAGCTTGGGGGAGTTGAT 60.292 50.000 9.86 0.00 0.00 2.57
407 408 1.074889 GGTTAAGCTTGGGGGAGTTGA 59.925 52.381 9.86 0.00 0.00 3.18
408 409 1.545841 GGTTAAGCTTGGGGGAGTTG 58.454 55.000 9.86 0.00 0.00 3.16
409 410 0.408309 GGGTTAAGCTTGGGGGAGTT 59.592 55.000 9.86 0.00 0.00 3.01
410 411 0.774491 TGGGTTAAGCTTGGGGGAGT 60.774 55.000 9.86 0.00 0.00 3.85
411 412 0.631212 ATGGGTTAAGCTTGGGGGAG 59.369 55.000 9.86 0.00 0.00 4.30
412 413 1.089123 AATGGGTTAAGCTTGGGGGA 58.911 50.000 9.86 0.00 0.00 4.81
413 414 1.194218 CAATGGGTTAAGCTTGGGGG 58.806 55.000 9.86 0.00 0.00 5.40
414 415 0.536724 GCAATGGGTTAAGCTTGGGG 59.463 55.000 9.86 0.00 0.00 4.96
415 416 1.560505 AGCAATGGGTTAAGCTTGGG 58.439 50.000 9.86 0.00 32.52 4.12
419 420 2.171003 GGACAAGCAATGGGTTAAGCT 58.829 47.619 4.41 0.00 39.37 3.74
420 421 2.164422 GAGGACAAGCAATGGGTTAAGC 59.836 50.000 0.00 0.00 32.48 3.09
421 422 3.420893 TGAGGACAAGCAATGGGTTAAG 58.579 45.455 0.00 0.00 32.48 1.85
422 423 3.517296 TGAGGACAAGCAATGGGTTAA 57.483 42.857 0.00 0.00 32.48 2.01
423 424 3.420893 CTTGAGGACAAGCAATGGGTTA 58.579 45.455 0.00 0.00 45.19 2.85
424 425 2.242043 CTTGAGGACAAGCAATGGGTT 58.758 47.619 0.00 0.00 45.19 4.11
425 426 1.915141 CTTGAGGACAAGCAATGGGT 58.085 50.000 0.00 0.00 45.19 4.51
434 435 4.036734 GTCAACTGAATTGCTTGAGGACAA 59.963 41.667 0.00 0.00 38.29 3.18
435 436 3.565482 GTCAACTGAATTGCTTGAGGACA 59.435 43.478 0.00 0.00 38.29 4.02
436 437 3.565482 TGTCAACTGAATTGCTTGAGGAC 59.435 43.478 0.00 0.00 38.29 3.85
437 438 3.819368 TGTCAACTGAATTGCTTGAGGA 58.181 40.909 0.00 0.00 38.29 3.71
438 439 4.572985 TTGTCAACTGAATTGCTTGAGG 57.427 40.909 0.00 0.00 38.29 3.86
439 440 5.585390 AGTTTGTCAACTGAATTGCTTGAG 58.415 37.500 0.00 0.00 42.05 3.02
440 441 5.581126 AGTTTGTCAACTGAATTGCTTGA 57.419 34.783 0.00 0.00 42.05 3.02
441 442 7.754069 TTTAGTTTGTCAACTGAATTGCTTG 57.246 32.000 0.00 0.00 43.54 4.01
442 443 8.034804 ACTTTTAGTTTGTCAACTGAATTGCTT 58.965 29.630 0.00 0.00 43.54 3.91
443 444 7.489113 CACTTTTAGTTTGTCAACTGAATTGCT 59.511 33.333 0.00 0.00 43.54 3.91
444 445 7.275560 ACACTTTTAGTTTGTCAACTGAATTGC 59.724 33.333 0.00 0.00 43.54 3.56
445 446 8.687824 ACACTTTTAGTTTGTCAACTGAATTG 57.312 30.769 0.00 0.72 43.54 2.32
527 529 8.674263 ACATTTTCCAAATGTTGCTTGATTAA 57.326 26.923 8.71 0.00 37.58 1.40
697 841 6.182507 TGGTCAACCTTTGTTCTATACACT 57.817 37.500 0.10 0.00 34.89 3.55
766 910 7.693969 ACATCTCTTTCAATCCCTGTTTAAG 57.306 36.000 0.00 0.00 0.00 1.85
774 918 5.964958 TGTTCAACATCTCTTTCAATCCC 57.035 39.130 0.00 0.00 0.00 3.85
780 924 7.250569 TCAAACACTTGTTCAACATCTCTTTC 58.749 34.615 0.00 0.00 37.25 2.62
784 928 6.363577 TCTCAAACACTTGTTCAACATCTC 57.636 37.500 0.00 0.00 37.25 2.75
786 930 7.489113 ACATTTCTCAAACACTTGTTCAACATC 59.511 33.333 0.00 0.00 37.25 3.06
805 949 7.392673 ACAGAGATGTGCTTGATTAACATTTCT 59.607 33.333 3.10 3.10 42.98 2.52
806 950 7.484007 CACAGAGATGTGCTTGATTAACATTTC 59.516 37.037 0.00 0.00 36.29 2.17
822 1806 1.480212 TTCACGGCCCACAGAGATGT 61.480 55.000 0.00 0.00 0.00 3.06
921 1907 2.621998 CAAGATTGCAGGAGGCCTAATG 59.378 50.000 4.42 9.06 43.89 1.90
966 1957 5.016831 TGTCTAGTCTGTAGATTGCAGGAA 58.983 41.667 0.00 0.00 34.89 3.36
1072 2063 1.377463 CAGAGAGGGAGACGACGGT 60.377 63.158 0.00 0.00 0.00 4.83
1164 2155 0.179189 CAAAGCGTCGCCCAGATTTC 60.179 55.000 14.86 0.00 0.00 2.17
1238 2230 0.042188 CTATGTTGGCGCCGAATTCG 60.042 55.000 20.60 20.92 39.44 3.34
1254 2246 0.891373 CCGTGGATGGATCGCTCTAT 59.109 55.000 0.00 0.00 0.00 1.98
1389 2384 7.487189 CGTTTTATAGTTGTTACATCGACTCCT 59.513 37.037 0.00 0.00 34.37 3.69
1499 2494 3.056536 TCAACTGGATCCTCGACTTTGAG 60.057 47.826 14.23 0.55 35.70 3.02
1578 2635 5.978919 GTCACTGATTTTGCAATCAAGTCAA 59.021 36.000 0.00 0.00 46.67 3.18
1592 2649 5.862845 ACACTCTTGATCTGTCACTGATTT 58.137 37.500 0.00 0.00 33.11 2.17
1599 2656 4.923415 TCCTCTACACTCTTGATCTGTCA 58.077 43.478 0.00 0.00 0.00 3.58
1643 2700 9.928618 TGTAATTTGAGGGAATGGTTATGATAA 57.071 29.630 0.00 0.00 0.00 1.75
1652 2709 8.477256 ACATAAATGTGTAATTTGAGGGAATGG 58.523 33.333 0.00 0.00 40.03 3.16
1669 2726 6.996509 AGCCAAAAGAATCACACATAAATGT 58.003 32.000 0.00 0.00 42.84 2.71
1671 2728 7.472334 AGAGCCAAAAGAATCACACATAAAT 57.528 32.000 0.00 0.00 0.00 1.40
1715 3010 4.795970 ACAAAGACATTCAACTCGACAC 57.204 40.909 0.00 0.00 0.00 3.67
1730 3025 7.738847 TCATAGATGAGGATGCAATACAAAGA 58.261 34.615 0.00 0.00 32.11 2.52
1767 3062 8.157476 ACATCTACAAGACATCCAAAGTTACTT 58.843 33.333 0.00 0.00 0.00 2.24
1768 3063 7.680730 ACATCTACAAGACATCCAAAGTTACT 58.319 34.615 0.00 0.00 0.00 2.24
1769 3064 7.907214 ACATCTACAAGACATCCAAAGTTAC 57.093 36.000 0.00 0.00 0.00 2.50
1902 3197 3.947910 TCGTTTCCCTGTTACGAATCT 57.052 42.857 0.00 0.00 40.86 2.40
1909 3204 4.022589 CGCTATCCTATCGTTTCCCTGTTA 60.023 45.833 0.00 0.00 0.00 2.41
1946 3244 2.743553 CCTCTCCTTCATTTGCCCATT 58.256 47.619 0.00 0.00 0.00 3.16
1953 3251 2.091994 CCAGGATGCCTCTCCTTCATTT 60.092 50.000 0.00 0.00 43.33 2.32
2033 3331 4.640771 AGGGTGATAGAAAAGCTCACAA 57.359 40.909 4.52 0.00 40.80 3.33
2163 3462 5.241949 TGAACCTTTTAGCTATCCGCAAAAA 59.758 36.000 0.00 0.00 42.61 1.94
2164 3463 4.762765 TGAACCTTTTAGCTATCCGCAAAA 59.237 37.500 0.00 0.00 42.61 2.44
2309 3654 6.882678 TGCTATTTACCTAAACAAACCTCTCC 59.117 38.462 0.00 0.00 0.00 3.71
2369 3714 2.578714 GCCCCAATCCCGCAACAAA 61.579 57.895 0.00 0.00 0.00 2.83
2407 3752 6.016610 TGAGGGAAGTAACACAAATAAAGTGC 60.017 38.462 0.00 0.00 40.59 4.40
2412 3757 7.507616 ACCATTTGAGGGAAGTAACACAAATAA 59.492 33.333 0.00 0.00 36.59 1.40
2413 3758 7.007723 ACCATTTGAGGGAAGTAACACAAATA 58.992 34.615 0.00 0.00 36.59 1.40
2414 3759 5.838521 ACCATTTGAGGGAAGTAACACAAAT 59.161 36.000 0.00 0.00 38.09 2.32
2532 3877 4.352298 AGACCCTTTCCCTGATGATTATCC 59.648 45.833 0.00 0.00 32.09 2.59
2540 3885 5.492524 TCATTTCTAAGACCCTTTCCCTGAT 59.507 40.000 0.00 0.00 0.00 2.90
2549 3894 8.650143 TTAGCAAATTTCATTTCTAAGACCCT 57.350 30.769 0.00 0.00 0.00 4.34
2730 4076 9.816787 TTTACTTTACCCATTCTACTTTTGGAT 57.183 29.630 0.00 0.00 31.94 3.41
2956 4305 9.072294 CATAACAAACCTTCTTTTATAAAGCCG 57.928 33.333 0.00 0.00 0.00 5.52
2964 4313 8.514330 ACTCACACATAACAAACCTTCTTTTA 57.486 30.769 0.00 0.00 0.00 1.52
3009 4358 5.540337 AGTCTCCATCTTTCTTGTACTGTGA 59.460 40.000 0.00 0.00 0.00 3.58
3015 4364 5.306937 TCAACCAGTCTCCATCTTTCTTGTA 59.693 40.000 0.00 0.00 0.00 2.41
3055 4409 4.154015 TCAGTGCGTCATCTTGGTTTATTG 59.846 41.667 0.00 0.00 0.00 1.90
3064 4418 3.340814 AATTCCTCAGTGCGTCATCTT 57.659 42.857 0.00 0.00 0.00 2.40
3143 4497 8.424918 AGATTCATCCGAGTAAAGTAATCATGT 58.575 33.333 0.00 0.00 0.00 3.21
3198 4552 1.945394 GCCTAGCAGAACATGACCATG 59.055 52.381 0.00 8.34 44.15 3.66
3379 4733 7.876068 AGACACCACGATTAACTATCTGAAAAA 59.124 33.333 0.00 0.00 0.00 1.94
3380 4734 7.383687 AGACACCACGATTAACTATCTGAAAA 58.616 34.615 0.00 0.00 0.00 2.29
3381 4735 6.931838 AGACACCACGATTAACTATCTGAAA 58.068 36.000 0.00 0.00 0.00 2.69
3382 4736 6.152154 TGAGACACCACGATTAACTATCTGAA 59.848 38.462 0.00 0.00 0.00 3.02
3383 4737 5.650703 TGAGACACCACGATTAACTATCTGA 59.349 40.000 0.00 0.00 0.00 3.27
3384 4738 5.744345 GTGAGACACCACGATTAACTATCTG 59.256 44.000 0.00 0.00 0.00 2.90
3385 4739 5.417894 TGTGAGACACCACGATTAACTATCT 59.582 40.000 0.00 0.00 39.80 1.98
3386 4740 5.515626 GTGTGAGACACCACGATTAACTATC 59.484 44.000 0.00 0.00 43.05 2.08
3387 4741 5.408356 GTGTGAGACACCACGATTAACTAT 58.592 41.667 0.00 0.00 43.05 2.12
3388 4742 4.614306 CGTGTGAGACACCACGATTAACTA 60.614 45.833 6.33 0.00 45.93 2.24
3389 4743 3.650139 GTGTGAGACACCACGATTAACT 58.350 45.455 0.00 0.00 43.05 2.24
3390 4744 2.407361 CGTGTGAGACACCACGATTAAC 59.593 50.000 6.33 0.28 45.93 2.01
3413 4767 3.380320 GGTTTATCCCTCCAATTGGTTCG 59.620 47.826 23.76 13.10 36.34 3.95
3518 4906 4.304110 ACTGCGACTACGAGAAAATTTCA 58.696 39.130 8.55 0.00 42.66 2.69
3520 4908 6.237490 CGATAACTGCGACTACGAGAAAATTT 60.237 38.462 0.00 0.00 42.66 1.82
3534 4923 2.540973 CGGAGATCAACGATAACTGCGA 60.541 50.000 0.00 0.00 42.93 5.10
3581 4970 4.842091 CCTGCAAGATTGGCGCGC 62.842 66.667 25.94 25.94 34.07 6.86
3585 4974 3.391506 AACTTTTCCTGCAAGATTGGC 57.608 42.857 0.00 0.00 34.07 4.52
3686 5079 0.875059 CTCCGTGGTGCTTTCTTTCC 59.125 55.000 0.00 0.00 0.00 3.13
3697 5090 0.318445 CGTTTCTTCGTCTCCGTGGT 60.318 55.000 0.00 0.00 35.01 4.16
3752 5146 7.229506 GGTAAATGAGGATTATTGGACCAAGAG 59.770 40.741 13.43 0.00 30.41 2.85
3776 5170 2.034053 CACACCATGTTTAAAGCACGGT 59.966 45.455 3.66 3.66 32.12 4.83
3974 5393 4.530857 GCTGGATCCCACGGACCG 62.531 72.222 13.61 13.61 32.98 4.79
3991 5410 3.057736 CAGAACAGCCAAGTGGATTTCAG 60.058 47.826 0.18 0.00 37.39 3.02
4011 5435 5.601662 ACATATCCGACAGTATCCAAACAG 58.398 41.667 0.00 0.00 0.00 3.16
4012 5436 5.607939 ACATATCCGACAGTATCCAAACA 57.392 39.130 0.00 0.00 0.00 2.83
4013 5437 6.920569 AAACATATCCGACAGTATCCAAAC 57.079 37.500 0.00 0.00 0.00 2.93
4014 5438 7.827236 AGAAAAACATATCCGACAGTATCCAAA 59.173 33.333 0.00 0.00 0.00 3.28
4015 5439 7.335627 AGAAAAACATATCCGACAGTATCCAA 58.664 34.615 0.00 0.00 0.00 3.53
4125 5626 4.462483 TCCTTTCTTGATATGGTTGTTGGC 59.538 41.667 0.00 0.00 0.00 4.52
4148 5649 5.306937 AGTTAGCAGGGCCTGTTTTATTTTT 59.693 36.000 32.80 8.93 33.43 1.94
4153 5654 3.518992 AAGTTAGCAGGGCCTGTTTTA 57.481 42.857 32.80 20.06 33.43 1.52
4154 5655 2.381752 AAGTTAGCAGGGCCTGTTTT 57.618 45.000 32.80 21.03 33.43 2.43
4213 5714 1.662438 CTGAGGTCGTCTCTGAGCCC 61.662 65.000 0.00 0.00 42.04 5.19
4229 5730 0.966179 TACGAAGTCTTGGCTGCTGA 59.034 50.000 0.00 0.00 43.93 4.26
4300 5801 5.005586 CACAACGCAACAAACAAATCAGATT 59.994 36.000 0.00 0.00 0.00 2.40
4301 5802 4.503734 CACAACGCAACAAACAAATCAGAT 59.496 37.500 0.00 0.00 0.00 2.90
4302 5803 3.856521 CACAACGCAACAAACAAATCAGA 59.143 39.130 0.00 0.00 0.00 3.27
4303 5804 3.856521 TCACAACGCAACAAACAAATCAG 59.143 39.130 0.00 0.00 0.00 2.90
4304 5805 3.838120 TCACAACGCAACAAACAAATCA 58.162 36.364 0.00 0.00 0.00 2.57
4305 5806 4.502282 TGATCACAACGCAACAAACAAATC 59.498 37.500 0.00 0.00 0.00 2.17
4364 5866 2.094675 GCTTTGCTTGCTTATCCTCCA 58.905 47.619 0.00 0.00 0.00 3.86
4408 5911 4.149511 TGCATGGATCCAACGATTAGAA 57.850 40.909 20.67 0.00 0.00 2.10
4433 5939 1.805945 GAGCATGTCACCGTCGGAC 60.806 63.158 20.51 7.27 35.83 4.79
4447 5953 1.703014 GGCCTCATCAGATGGGAGCA 61.703 60.000 12.36 0.00 30.24 4.26
4558 6068 6.646636 CCTCTATCAACGGCTTTAAAATACG 58.353 40.000 4.82 4.82 0.00 3.06
4635 6161 1.978617 AACCGGGCAGGAGCAATTG 60.979 57.895 11.67 0.00 45.00 2.32
4658 6184 3.150458 GTTTGGTTTGTACCCCTAGCT 57.850 47.619 0.00 0.00 44.35 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.