Multiple sequence alignment - TraesCS5B01G321900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G321900 chr5B 100.000 4377 0 0 1 4377 506948195 506952571 0.000000e+00 8083.0
1 TraesCS5B01G321900 chr5B 81.062 433 78 4 1 431 275751316 275751746 4.190000e-90 342.0
2 TraesCS5B01G321900 chr5B 80.876 434 76 7 1 431 230358172 230357743 7.010000e-88 335.0
3 TraesCS5B01G321900 chr5A 91.195 3850 196 71 591 4377 534241959 534245728 0.000000e+00 5099.0
4 TraesCS5B01G321900 chr5D 93.868 1794 77 18 1971 3749 420871403 420873178 0.000000e+00 2673.0
5 TraesCS5B01G321900 chr5D 90.385 1404 77 30 590 1973 420869976 420871341 0.000000e+00 1792.0
6 TraesCS5B01G321900 chr5D 92.292 480 18 11 3916 4376 420873368 420873847 0.000000e+00 664.0
7 TraesCS5B01G321900 chr5D 83.633 556 68 10 1 533 272120914 272121469 6.540000e-138 501.0
8 TraesCS5B01G321900 chr5D 82.698 341 53 5 2779 3117 410377233 410376897 9.200000e-77 298.0
9 TraesCS5B01G321900 chr6D 94.577 1217 61 3 1977 3188 299212619 299213835 0.000000e+00 1877.0
10 TraesCS5B01G321900 chr6D 100.000 43 0 0 1817 1859 38471725 38471767 3.630000e-11 80.5
11 TraesCS5B01G321900 chr6A 94.358 1223 61 4 1971 3188 212307925 212309144 0.000000e+00 1869.0
12 TraesCS5B01G321900 chr6A 100.000 43 0 0 1817 1859 68528199 68528241 3.630000e-11 80.5
13 TraesCS5B01G321900 chr4D 94.481 1214 62 3 1980 3188 69350504 69349291 0.000000e+00 1866.0
14 TraesCS5B01G321900 chrUn 94.084 1217 63 4 1977 3188 52774589 52773377 0.000000e+00 1840.0
15 TraesCS5B01G321900 chrUn 93.949 1223 65 4 1971 3188 258404454 258405672 0.000000e+00 1840.0
16 TraesCS5B01G321900 chrUn 93.657 268 17 0 1709 1976 52774921 52774654 6.820000e-108 401.0
17 TraesCS5B01G321900 chrUn 93.962 265 16 0 1709 1973 258404128 258404392 6.820000e-108 401.0
18 TraesCS5B01G321900 chrUn 100.000 43 0 0 1817 1859 40167902 40167860 3.630000e-11 80.5
19 TraesCS5B01G321900 chr2D 92.751 1214 61 4 1980 3188 476480289 476479098 0.000000e+00 1729.0
20 TraesCS5B01G321900 chr2D 100.000 30 0 0 3916 3945 388081664 388081635 6.120000e-04 56.5
21 TraesCS5B01G321900 chr7B 93.369 558 13 1 1 534 519535246 519535803 0.000000e+00 804.0
22 TraesCS5B01G321900 chr7B 88.710 558 39 10 1 534 610291541 610290984 0.000000e+00 660.0
23 TraesCS5B01G321900 chr7B 100.000 56 0 0 534 589 519535783 519535838 2.150000e-18 104.0
24 TraesCS5B01G321900 chr7B 97.959 49 1 0 541 589 610290997 610290949 7.800000e-13 86.1
25 TraesCS5B01G321900 chr7B 100.000 28 0 0 3916 3943 490676844 490676871 8.000000e-03 52.8
26 TraesCS5B01G321900 chr2B 93.011 558 15 1 1 534 19039157 19039714 0.000000e+00 793.0
27 TraesCS5B01G321900 chr2B 100.000 56 0 0 534 589 19039694 19039749 2.150000e-18 104.0
28 TraesCS5B01G321900 chr7A 92.870 547 33 4 3102 3646 169760732 169761274 0.000000e+00 789.0
29 TraesCS5B01G321900 chr3B 92.322 547 33 5 3102 3646 218228804 218228265 0.000000e+00 769.0
30 TraesCS5B01G321900 chr3B 92.322 547 33 4 3102 3646 219749706 219749167 0.000000e+00 769.0
31 TraesCS5B01G321900 chr3B 91.408 547 36 5 3102 3646 58466247 58466784 0.000000e+00 739.0
32 TraesCS5B01G321900 chr3B 86.348 564 48 12 1 535 675221250 675221813 4.880000e-164 588.0
33 TraesCS5B01G321900 chr1A 89.606 558 34 1 1 534 573640114 573640671 0.000000e+00 688.0
34 TraesCS5B01G321900 chr1A 97.959 49 1 0 541 589 573640658 573640706 7.800000e-13 86.1
35 TraesCS5B01G321900 chr1A 100.000 28 0 0 3916 3943 240310135 240310162 8.000000e-03 52.8
36 TraesCS5B01G321900 chr1A 100.000 28 0 0 3916 3943 479836092 479836119 8.000000e-03 52.8
37 TraesCS5B01G321900 chr2A 85.842 558 55 10 1 534 142419029 142418472 4.910000e-159 571.0
38 TraesCS5B01G321900 chr1D 94.717 265 14 0 1709 1973 76794947 76795211 3.150000e-111 412.0
39 TraesCS5B01G321900 chr1D 100.000 28 0 0 3916 3943 193504388 193504415 8.000000e-03 52.8
40 TraesCS5B01G321900 chr1D 100.000 28 0 0 3916 3943 379141279 379141306 8.000000e-03 52.8
41 TraesCS5B01G321900 chr4B 84.010 394 57 5 2008 2399 74285752 74285363 1.490000e-99 374.0
42 TraesCS5B01G321900 chr6B 100.000 43 0 0 1817 1859 511349510 511349468 3.630000e-11 80.5
43 TraesCS5B01G321900 chr4A 100.000 29 0 0 3915 3943 66761935 66761963 2.000000e-03 54.7
44 TraesCS5B01G321900 chr7D 100.000 28 0 0 3916 3943 265693481 265693454 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G321900 chr5B 506948195 506952571 4376 False 8083.000000 8083 100.000000 1 4377 1 chr5B.!!$F2 4376
1 TraesCS5B01G321900 chr5A 534241959 534245728 3769 False 5099.000000 5099 91.195000 591 4377 1 chr5A.!!$F1 3786
2 TraesCS5B01G321900 chr5D 420869976 420873847 3871 False 1709.666667 2673 92.181667 590 4376 3 chr5D.!!$F2 3786
3 TraesCS5B01G321900 chr5D 272120914 272121469 555 False 501.000000 501 83.633000 1 533 1 chr5D.!!$F1 532
4 TraesCS5B01G321900 chr6D 299212619 299213835 1216 False 1877.000000 1877 94.577000 1977 3188 1 chr6D.!!$F2 1211
5 TraesCS5B01G321900 chr6A 212307925 212309144 1219 False 1869.000000 1869 94.358000 1971 3188 1 chr6A.!!$F2 1217
6 TraesCS5B01G321900 chr4D 69349291 69350504 1213 True 1866.000000 1866 94.481000 1980 3188 1 chr4D.!!$R1 1208
7 TraesCS5B01G321900 chrUn 52773377 52774921 1544 True 1120.500000 1840 93.870500 1709 3188 2 chrUn.!!$R2 1479
8 TraesCS5B01G321900 chrUn 258404128 258405672 1544 False 1120.500000 1840 93.955500 1709 3188 2 chrUn.!!$F1 1479
9 TraesCS5B01G321900 chr2D 476479098 476480289 1191 True 1729.000000 1729 92.751000 1980 3188 1 chr2D.!!$R2 1208
10 TraesCS5B01G321900 chr7B 519535246 519535838 592 False 454.000000 804 96.684500 1 589 2 chr7B.!!$F2 588
11 TraesCS5B01G321900 chr7B 610290949 610291541 592 True 373.050000 660 93.334500 1 589 2 chr7B.!!$R1 588
12 TraesCS5B01G321900 chr2B 19039157 19039749 592 False 448.500000 793 96.505500 1 589 2 chr2B.!!$F1 588
13 TraesCS5B01G321900 chr7A 169760732 169761274 542 False 789.000000 789 92.870000 3102 3646 1 chr7A.!!$F1 544
14 TraesCS5B01G321900 chr3B 218228265 218228804 539 True 769.000000 769 92.322000 3102 3646 1 chr3B.!!$R1 544
15 TraesCS5B01G321900 chr3B 219749167 219749706 539 True 769.000000 769 92.322000 3102 3646 1 chr3B.!!$R2 544
16 TraesCS5B01G321900 chr3B 58466247 58466784 537 False 739.000000 739 91.408000 3102 3646 1 chr3B.!!$F1 544
17 TraesCS5B01G321900 chr3B 675221250 675221813 563 False 588.000000 588 86.348000 1 535 1 chr3B.!!$F2 534
18 TraesCS5B01G321900 chr1A 573640114 573640706 592 False 387.050000 688 93.782500 1 589 2 chr1A.!!$F3 588
19 TraesCS5B01G321900 chr2A 142418472 142419029 557 True 571.000000 571 85.842000 1 534 1 chr2A.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.035630 GCAGATGCTGTGGAGAACCT 60.036 55.000 0.00 0.0 38.21 3.50 F
448 449 0.040499 GGTGCCCCTGGATGGTTTAA 59.960 55.000 0.00 0.0 0.00 1.52 F
1263 1299 0.040336 GCATCCTTCGATCGCTCGTA 60.040 55.000 11.09 0.0 45.25 3.43 F
2579 2695 1.068402 TGCATGCTTGAAATGGTGACG 60.068 47.619 20.33 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1099 0.322277 ACTCGACGAGGACAAGGCTA 60.322 55.0 27.39 0.00 33.35 3.93 R
1479 1525 0.939577 ATAGTAATGCAGCGACGCCG 60.940 55.0 17.79 7.62 39.16 6.46 R
3121 3254 0.107848 GGTCCACATCGAACGGGAAT 60.108 55.0 4.15 0.00 0.00 3.01 R
3953 4501 0.179032 TGTCGGCTGTGTCAATTGGT 60.179 50.0 5.42 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.621814 CCTTTTCCCACACTCGGTCTA 59.378 52.381 0.00 0.00 0.00 2.59
87 88 4.036734 CCCATCTTATTTTGTCCCACATCG 59.963 45.833 0.00 0.00 0.00 3.84
116 117 1.278127 ACCCAAATACCGGTCACTCAG 59.722 52.381 12.40 0.00 0.00 3.35
138 139 3.725740 GTGACTCGTTTTGCACATTCAAG 59.274 43.478 0.00 0.00 0.00 3.02
158 159 7.786178 TCAAGATATTCTTAATGTTGTCCCG 57.214 36.000 0.00 0.00 33.78 5.14
162 163 3.410631 TTCTTAATGTTGTCCCGCAGA 57.589 42.857 0.00 0.00 0.00 4.26
165 166 1.378531 TAATGTTGTCCCGCAGATGC 58.621 50.000 0.00 0.00 37.78 3.91
174 175 4.604114 CGCAGATGCTGTGGAGAA 57.396 55.556 2.95 0.00 38.21 2.87
177 178 0.035630 GCAGATGCTGTGGAGAACCT 60.036 55.000 0.00 0.00 38.21 3.50
183 184 3.126001 TGCTGTGGAGAACCTTTACTG 57.874 47.619 0.00 0.00 37.04 2.74
186 187 4.134563 GCTGTGGAGAACCTTTACTGAAA 58.865 43.478 0.00 0.00 37.04 2.69
189 190 6.239036 GCTGTGGAGAACCTTTACTGAAAAAT 60.239 38.462 0.00 0.00 37.04 1.82
195 196 8.604890 GGAGAACCTTTACTGAAAAATATCGAG 58.395 37.037 0.00 0.00 0.00 4.04
219 220 7.220030 AGGATTTATCATGATTTACTCGCTGT 58.780 34.615 14.65 0.00 0.00 4.40
222 223 3.179443 TCATGATTTACTCGCTGTCCC 57.821 47.619 0.00 0.00 0.00 4.46
228 229 1.600511 TTACTCGCTGTCCCGATGCA 61.601 55.000 0.00 0.00 36.54 3.96
229 230 2.279502 TACTCGCTGTCCCGATGCAC 62.280 60.000 0.00 0.00 36.54 4.57
231 232 3.190849 CGCTGTCCCGATGCACTG 61.191 66.667 0.00 0.00 0.00 3.66
238 239 2.103941 TGTCCCGATGCACTGCAATATA 59.896 45.455 8.03 0.00 43.62 0.86
239 240 3.138304 GTCCCGATGCACTGCAATATAA 58.862 45.455 8.03 0.00 43.62 0.98
246 247 4.963276 TGCACTGCAATATAACTCCAAC 57.037 40.909 0.00 0.00 34.76 3.77
259 260 4.718940 AACTCCAACAGGTTTGAAACTG 57.281 40.909 8.09 7.22 40.48 3.16
261 262 2.689983 CTCCAACAGGTTTGAAACTGCT 59.310 45.455 8.63 0.00 38.25 4.24
278 279 1.132500 GCTACTGCCCCCTCATTACT 58.868 55.000 0.00 0.00 0.00 2.24
312 313 4.081406 ACAACAGGCTATCATCAGCAAAA 58.919 39.130 0.00 0.00 43.67 2.44
315 316 3.698040 ACAGGCTATCATCAGCAAAAAGG 59.302 43.478 0.00 0.00 43.67 3.11
318 319 4.080129 AGGCTATCATCAGCAAAAAGGAGA 60.080 41.667 0.00 0.00 43.67 3.71
328 329 5.596361 TCAGCAAAAAGGAGATGGTTTACAA 59.404 36.000 0.00 0.00 0.00 2.41
339 340 1.601166 GGTTTACAACCGGAGCTGTT 58.399 50.000 9.46 0.00 42.62 3.16
341 342 1.265905 GTTTACAACCGGAGCTGTTGG 59.734 52.381 9.46 7.07 45.72 3.77
357 358 1.434513 TTGGTGCCACCTTGATCCCT 61.435 55.000 16.23 0.00 39.58 4.20
366 367 0.622665 CCTTGATCCCTCCAAGCACT 59.377 55.000 0.00 0.00 39.60 4.40
372 373 0.615331 TCCCTCCAAGCACTGATGAC 59.385 55.000 0.00 0.00 0.00 3.06
387 388 5.991606 CACTGATGACTGAGAACTGGTTTTA 59.008 40.000 0.00 0.00 0.00 1.52
431 432 5.012239 TGCTGCAATCAAGAAAAGATAGGT 58.988 37.500 0.00 0.00 0.00 3.08
432 433 5.106038 TGCTGCAATCAAGAAAAGATAGGTG 60.106 40.000 0.00 0.00 0.00 4.00
433 434 5.314923 TGCAATCAAGAAAAGATAGGTGC 57.685 39.130 0.00 0.00 30.98 5.01
434 435 4.158394 TGCAATCAAGAAAAGATAGGTGCC 59.842 41.667 0.00 0.00 29.83 5.01
435 436 4.440663 GCAATCAAGAAAAGATAGGTGCCC 60.441 45.833 0.00 0.00 0.00 5.36
436 437 3.366052 TCAAGAAAAGATAGGTGCCCC 57.634 47.619 0.00 0.00 0.00 5.80
437 438 2.919602 TCAAGAAAAGATAGGTGCCCCT 59.080 45.455 0.00 0.00 45.51 4.79
438 439 3.019564 CAAGAAAAGATAGGTGCCCCTG 58.980 50.000 0.00 0.00 42.67 4.45
439 440 1.566231 AGAAAAGATAGGTGCCCCTGG 59.434 52.381 0.00 0.00 42.67 4.45
440 441 1.564348 GAAAAGATAGGTGCCCCTGGA 59.436 52.381 0.00 0.00 42.67 3.86
441 442 1.912862 AAAGATAGGTGCCCCTGGAT 58.087 50.000 0.00 0.00 42.67 3.41
442 443 1.143813 AAGATAGGTGCCCCTGGATG 58.856 55.000 0.00 0.00 42.67 3.51
443 444 0.769776 AGATAGGTGCCCCTGGATGG 60.770 60.000 0.00 0.00 42.67 3.51
444 445 1.006092 ATAGGTGCCCCTGGATGGT 59.994 57.895 0.00 0.00 42.67 3.55
445 446 0.627469 ATAGGTGCCCCTGGATGGTT 60.627 55.000 0.00 0.00 42.67 3.67
446 447 0.849094 TAGGTGCCCCTGGATGGTTT 60.849 55.000 0.00 0.00 42.67 3.27
447 448 0.849094 AGGTGCCCCTGGATGGTTTA 60.849 55.000 0.00 0.00 40.58 2.01
448 449 0.040499 GGTGCCCCTGGATGGTTTAA 59.960 55.000 0.00 0.00 0.00 1.52
449 450 1.551329 GGTGCCCCTGGATGGTTTAAA 60.551 52.381 0.00 0.00 0.00 1.52
450 451 1.548719 GTGCCCCTGGATGGTTTAAAC 59.451 52.381 9.98 9.98 0.00 2.01
464 465 5.614923 GGTTTAAACCTCTCAAGCTTCTC 57.385 43.478 26.98 0.00 45.75 2.87
465 466 5.309638 GGTTTAAACCTCTCAAGCTTCTCT 58.690 41.667 26.98 0.00 45.75 3.10
466 467 5.410132 GGTTTAAACCTCTCAAGCTTCTCTC 59.590 44.000 26.98 0.00 45.75 3.20
467 468 3.694043 AAACCTCTCAAGCTTCTCTCC 57.306 47.619 0.00 0.00 0.00 3.71
468 469 2.317371 ACCTCTCAAGCTTCTCTCCA 57.683 50.000 0.00 0.00 0.00 3.86
469 470 2.831565 ACCTCTCAAGCTTCTCTCCAT 58.168 47.619 0.00 0.00 0.00 3.41
470 471 3.180507 ACCTCTCAAGCTTCTCTCCATT 58.819 45.455 0.00 0.00 0.00 3.16
471 472 4.357325 ACCTCTCAAGCTTCTCTCCATTA 58.643 43.478 0.00 0.00 0.00 1.90
472 473 4.780021 ACCTCTCAAGCTTCTCTCCATTAA 59.220 41.667 0.00 0.00 0.00 1.40
473 474 5.249393 ACCTCTCAAGCTTCTCTCCATTAAA 59.751 40.000 0.00 0.00 0.00 1.52
474 475 6.069731 ACCTCTCAAGCTTCTCTCCATTAAAT 60.070 38.462 0.00 0.00 0.00 1.40
475 476 7.126421 ACCTCTCAAGCTTCTCTCCATTAAATA 59.874 37.037 0.00 0.00 0.00 1.40
476 477 7.989741 CCTCTCAAGCTTCTCTCCATTAAATAA 59.010 37.037 0.00 0.00 0.00 1.40
477 478 9.388506 CTCTCAAGCTTCTCTCCATTAAATAAA 57.611 33.333 0.00 0.00 0.00 1.40
478 479 9.739276 TCTCAAGCTTCTCTCCATTAAATAAAA 57.261 29.630 0.00 0.00 0.00 1.52
479 480 9.780413 CTCAAGCTTCTCTCCATTAAATAAAAC 57.220 33.333 0.00 0.00 0.00 2.43
480 481 9.295825 TCAAGCTTCTCTCCATTAAATAAAACA 57.704 29.630 0.00 0.00 0.00 2.83
481 482 9.565213 CAAGCTTCTCTCCATTAAATAAAACAG 57.435 33.333 0.00 0.00 0.00 3.16
482 483 9.520515 AAGCTTCTCTCCATTAAATAAAACAGA 57.479 29.630 0.00 0.00 0.00 3.41
483 484 9.171877 AGCTTCTCTCCATTAAATAAAACAGAG 57.828 33.333 0.00 0.00 0.00 3.35
484 485 9.167311 GCTTCTCTCCATTAAATAAAACAGAGA 57.833 33.333 0.00 0.00 34.66 3.10
492 493 9.760660 CCATTAAATAAAACAGAGAAAGAGACG 57.239 33.333 0.00 0.00 0.00 4.18
493 494 9.760660 CATTAAATAAAACAGAGAAAGAGACGG 57.239 33.333 0.00 0.00 0.00 4.79
494 495 9.720769 ATTAAATAAAACAGAGAAAGAGACGGA 57.279 29.630 0.00 0.00 0.00 4.69
495 496 7.659652 AAATAAAACAGAGAAAGAGACGGAG 57.340 36.000 0.00 0.00 0.00 4.63
496 497 2.734276 AACAGAGAAAGAGACGGAGC 57.266 50.000 0.00 0.00 0.00 4.70
497 498 1.917872 ACAGAGAAAGAGACGGAGCT 58.082 50.000 0.00 0.00 0.00 4.09
498 499 1.543802 ACAGAGAAAGAGACGGAGCTG 59.456 52.381 0.00 0.00 0.00 4.24
499 500 1.815613 CAGAGAAAGAGACGGAGCTGA 59.184 52.381 0.00 0.00 0.00 4.26
500 501 2.426738 CAGAGAAAGAGACGGAGCTGAT 59.573 50.000 0.00 0.00 0.00 2.90
501 502 2.687935 AGAGAAAGAGACGGAGCTGATC 59.312 50.000 0.00 0.00 0.00 2.92
502 503 2.425312 GAGAAAGAGACGGAGCTGATCA 59.575 50.000 0.00 0.00 0.00 2.92
503 504 3.030291 AGAAAGAGACGGAGCTGATCAT 58.970 45.455 0.00 0.00 0.00 2.45
504 505 4.211125 AGAAAGAGACGGAGCTGATCATA 58.789 43.478 0.00 0.00 0.00 2.15
505 506 4.037446 AGAAAGAGACGGAGCTGATCATAC 59.963 45.833 0.00 0.00 0.00 2.39
506 507 2.235016 AGAGACGGAGCTGATCATACC 58.765 52.381 0.00 0.00 0.00 2.73
507 508 1.271102 GAGACGGAGCTGATCATACCC 59.729 57.143 0.00 0.00 0.00 3.69
508 509 1.040646 GACGGAGCTGATCATACCCA 58.959 55.000 0.00 0.00 0.00 4.51
509 510 1.620819 GACGGAGCTGATCATACCCAT 59.379 52.381 0.00 0.00 0.00 4.00
510 511 2.826128 GACGGAGCTGATCATACCCATA 59.174 50.000 0.00 0.00 0.00 2.74
511 512 3.239449 ACGGAGCTGATCATACCCATAA 58.761 45.455 0.00 0.00 0.00 1.90
512 513 3.840666 ACGGAGCTGATCATACCCATAAT 59.159 43.478 0.00 0.00 0.00 1.28
513 514 5.023452 ACGGAGCTGATCATACCCATAATA 58.977 41.667 0.00 0.00 0.00 0.98
514 515 5.483937 ACGGAGCTGATCATACCCATAATAA 59.516 40.000 0.00 0.00 0.00 1.40
515 516 6.156949 ACGGAGCTGATCATACCCATAATAAT 59.843 38.462 0.00 0.00 0.00 1.28
516 517 6.481313 CGGAGCTGATCATACCCATAATAATG 59.519 42.308 0.00 0.00 0.00 1.90
517 518 7.341805 GGAGCTGATCATACCCATAATAATGT 58.658 38.462 0.00 0.00 0.00 2.71
518 519 7.497249 GGAGCTGATCATACCCATAATAATGTC 59.503 40.741 0.00 0.00 0.00 3.06
519 520 7.341805 AGCTGATCATACCCATAATAATGTCC 58.658 38.462 0.00 0.00 0.00 4.02
520 521 7.037370 AGCTGATCATACCCATAATAATGTCCA 60.037 37.037 0.00 0.00 0.00 4.02
521 522 7.066284 GCTGATCATACCCATAATAATGTCCAC 59.934 40.741 0.00 0.00 0.00 4.02
522 523 7.402054 TGATCATACCCATAATAATGTCCACC 58.598 38.462 0.00 0.00 0.00 4.61
523 524 6.134535 TCATACCCATAATAATGTCCACCC 57.865 41.667 0.00 0.00 0.00 4.61
524 525 5.613116 TCATACCCATAATAATGTCCACCCA 59.387 40.000 0.00 0.00 0.00 4.51
525 526 4.178956 ACCCATAATAATGTCCACCCAC 57.821 45.455 0.00 0.00 0.00 4.61
526 527 3.791545 ACCCATAATAATGTCCACCCACT 59.208 43.478 0.00 0.00 0.00 4.00
527 528 4.144297 CCCATAATAATGTCCACCCACTG 58.856 47.826 0.00 0.00 0.00 3.66
528 529 4.386312 CCCATAATAATGTCCACCCACTGT 60.386 45.833 0.00 0.00 0.00 3.55
529 530 5.200483 CCATAATAATGTCCACCCACTGTT 58.800 41.667 0.00 0.00 0.00 3.16
530 531 5.067674 CCATAATAATGTCCACCCACTGTTG 59.932 44.000 0.00 0.00 0.00 3.33
531 532 3.806949 ATAATGTCCACCCACTGTTGT 57.193 42.857 0.00 0.00 0.00 3.32
532 533 1.691196 AATGTCCACCCACTGTTGTG 58.309 50.000 1.25 1.25 43.45 3.33
533 534 0.843309 ATGTCCACCCACTGTTGTGA 59.157 50.000 8.40 0.00 46.55 3.58
534 535 0.621082 TGTCCACCCACTGTTGTGAA 59.379 50.000 8.40 0.00 46.55 3.18
535 536 1.214175 TGTCCACCCACTGTTGTGAAT 59.786 47.619 8.40 0.00 46.55 2.57
536 537 1.608590 GTCCACCCACTGTTGTGAATG 59.391 52.381 8.40 0.00 46.55 2.67
537 538 1.214175 TCCACCCACTGTTGTGAATGT 59.786 47.619 8.40 0.00 46.55 2.71
538 539 1.608590 CCACCCACTGTTGTGAATGTC 59.391 52.381 8.40 0.00 46.55 3.06
539 540 1.608590 CACCCACTGTTGTGAATGTCC 59.391 52.381 1.92 0.00 46.55 4.02
540 541 1.214175 ACCCACTGTTGTGAATGTCCA 59.786 47.619 0.00 0.00 46.55 4.02
541 542 1.608590 CCCACTGTTGTGAATGTCCAC 59.391 52.381 0.00 0.00 46.55 4.02
542 543 1.608590 CCACTGTTGTGAATGTCCACC 59.391 52.381 0.00 0.00 46.55 4.61
543 544 1.608590 CACTGTTGTGAATGTCCACCC 59.391 52.381 0.00 0.00 46.55 4.61
544 545 1.214175 ACTGTTGTGAATGTCCACCCA 59.786 47.619 0.00 0.00 36.26 4.51
545 546 1.608590 CTGTTGTGAATGTCCACCCAC 59.391 52.381 0.00 0.00 36.26 4.61
546 547 1.214175 TGTTGTGAATGTCCACCCACT 59.786 47.619 0.00 0.00 36.26 4.00
547 548 1.608590 GTTGTGAATGTCCACCCACTG 59.391 52.381 0.00 0.00 36.26 3.66
548 549 0.843309 TGTGAATGTCCACCCACTGT 59.157 50.000 0.00 0.00 36.26 3.55
549 550 1.214175 TGTGAATGTCCACCCACTGTT 59.786 47.619 0.00 0.00 36.26 3.16
550 551 1.608590 GTGAATGTCCACCCACTGTTG 59.391 52.381 0.00 0.00 0.00 3.33
551 552 1.214175 TGAATGTCCACCCACTGTTGT 59.786 47.619 0.00 0.00 0.00 3.32
552 553 1.608590 GAATGTCCACCCACTGTTGTG 59.391 52.381 1.25 1.25 43.45 3.33
553 554 0.843309 ATGTCCACCCACTGTTGTGA 59.157 50.000 8.40 0.00 46.55 3.58
554 555 0.180171 TGTCCACCCACTGTTGTGAG 59.820 55.000 8.40 0.99 46.55 3.51
555 556 0.468226 GTCCACCCACTGTTGTGAGA 59.532 55.000 8.40 2.89 46.55 3.27
556 557 1.134220 GTCCACCCACTGTTGTGAGAA 60.134 52.381 8.40 0.00 46.55 2.87
557 558 1.140852 TCCACCCACTGTTGTGAGAAG 59.859 52.381 8.40 0.00 46.55 2.85
558 559 0.947244 CACCCACTGTTGTGAGAAGC 59.053 55.000 1.92 0.00 46.55 3.86
559 560 0.179018 ACCCACTGTTGTGAGAAGCC 60.179 55.000 0.00 0.00 46.55 4.35
560 561 0.890996 CCCACTGTTGTGAGAAGCCC 60.891 60.000 0.00 0.00 46.55 5.19
561 562 0.179020 CCACTGTTGTGAGAAGCCCA 60.179 55.000 0.00 0.00 46.55 5.36
562 563 1.679139 CACTGTTGTGAGAAGCCCAA 58.321 50.000 0.00 0.00 46.55 4.12
563 564 1.334869 CACTGTTGTGAGAAGCCCAAC 59.665 52.381 0.00 0.00 46.55 3.77
564 565 1.212935 ACTGTTGTGAGAAGCCCAACT 59.787 47.619 0.00 0.00 39.30 3.16
565 566 1.605710 CTGTTGTGAGAAGCCCAACTG 59.394 52.381 0.00 0.00 39.30 3.16
566 567 1.211703 TGTTGTGAGAAGCCCAACTGA 59.788 47.619 0.00 0.00 39.30 3.41
567 568 2.297701 GTTGTGAGAAGCCCAACTGAA 58.702 47.619 0.00 0.00 36.43 3.02
568 569 2.887152 GTTGTGAGAAGCCCAACTGAAT 59.113 45.455 0.00 0.00 36.43 2.57
569 570 2.783135 TGTGAGAAGCCCAACTGAATC 58.217 47.619 0.00 0.00 0.00 2.52
570 571 2.106338 TGTGAGAAGCCCAACTGAATCA 59.894 45.455 0.00 0.00 0.00 2.57
571 572 3.245016 TGTGAGAAGCCCAACTGAATCAT 60.245 43.478 0.00 0.00 0.00 2.45
572 573 3.760684 GTGAGAAGCCCAACTGAATCATT 59.239 43.478 0.00 0.00 0.00 2.57
573 574 4.943705 GTGAGAAGCCCAACTGAATCATTA 59.056 41.667 0.00 0.00 0.00 1.90
574 575 5.591877 GTGAGAAGCCCAACTGAATCATTAT 59.408 40.000 0.00 0.00 0.00 1.28
575 576 6.096001 GTGAGAAGCCCAACTGAATCATTATT 59.904 38.462 0.00 0.00 0.00 1.40
576 577 6.095860 TGAGAAGCCCAACTGAATCATTATTG 59.904 38.462 0.00 0.00 0.00 1.90
577 578 4.660789 AGCCCAACTGAATCATTATTGC 57.339 40.909 0.00 0.00 0.00 3.56
578 579 3.385755 AGCCCAACTGAATCATTATTGCC 59.614 43.478 0.00 0.00 0.00 4.52
579 580 3.493176 GCCCAACTGAATCATTATTGCCC 60.493 47.826 0.00 0.00 0.00 5.36
580 581 3.243501 CCCAACTGAATCATTATTGCCCG 60.244 47.826 0.00 0.00 0.00 6.13
581 582 3.631686 CCAACTGAATCATTATTGCCCGA 59.368 43.478 0.00 0.00 0.00 5.14
582 583 4.097741 CCAACTGAATCATTATTGCCCGAA 59.902 41.667 0.00 0.00 0.00 4.30
583 584 5.276270 CAACTGAATCATTATTGCCCGAAG 58.724 41.667 0.00 0.00 0.00 3.79
584 585 4.780815 ACTGAATCATTATTGCCCGAAGA 58.219 39.130 0.00 0.00 0.00 2.87
585 586 5.380043 ACTGAATCATTATTGCCCGAAGAT 58.620 37.500 0.00 0.00 0.00 2.40
586 587 6.533730 ACTGAATCATTATTGCCCGAAGATA 58.466 36.000 0.00 0.00 0.00 1.98
587 588 6.652481 ACTGAATCATTATTGCCCGAAGATAG 59.348 38.462 0.00 0.00 0.00 2.08
588 589 5.412594 TGAATCATTATTGCCCGAAGATAGC 59.587 40.000 0.00 0.00 0.00 2.97
596 597 3.602677 CGAAGATAGCCCGGCGGA 61.603 66.667 30.79 8.18 0.00 5.54
695 698 1.592669 CGCACAGATGGACCGATCC 60.593 63.158 0.00 0.00 46.48 3.36
729 732 2.032178 GCCTGCCGATCAGAAACATTAC 59.968 50.000 6.27 0.00 45.72 1.89
745 748 3.240302 CATTACCCCTAGAATCCCGAGT 58.760 50.000 0.00 0.00 0.00 4.18
777 780 3.170791 TCAGATCCTGATTCAACGAGC 57.829 47.619 0.00 0.00 35.39 5.03
853 857 2.764128 GCACTCCCTCGATCCCCA 60.764 66.667 0.00 0.00 0.00 4.96
860 864 1.056700 CCCTCGATCCCCATCCAAGT 61.057 60.000 0.00 0.00 0.00 3.16
989 994 2.956964 CGATTCGGCTCGGCAGAC 60.957 66.667 0.00 0.00 31.79 3.51
1094 1099 3.090219 GCCGCTTCATCCGGGTACT 62.090 63.158 0.00 0.00 45.66 2.73
1095 1100 1.741327 GCCGCTTCATCCGGGTACTA 61.741 60.000 0.00 0.00 45.66 1.82
1139 1164 4.038162 TGCCGTTTTTACTTGCTTGGTAAT 59.962 37.500 0.00 0.00 0.00 1.89
1263 1299 0.040336 GCATCCTTCGATCGCTCGTA 60.040 55.000 11.09 0.00 45.25 3.43
1301 1346 1.069838 TGCTCGTCTAGATCGCGATTC 60.070 52.381 24.55 15.84 34.04 2.52
1332 1377 2.124695 GGTGGCCAGATTCGGTCC 60.125 66.667 5.11 0.00 0.00 4.46
1337 1382 1.120530 GGCCAGATTCGGTCCTCTAA 58.879 55.000 0.00 0.00 0.00 2.10
1338 1383 1.694696 GGCCAGATTCGGTCCTCTAAT 59.305 52.381 0.00 0.00 0.00 1.73
1339 1384 2.548920 GGCCAGATTCGGTCCTCTAATG 60.549 54.545 0.00 0.00 0.00 1.90
1341 1386 3.181465 GCCAGATTCGGTCCTCTAATGAA 60.181 47.826 0.00 0.00 0.00 2.57
1342 1387 4.503991 GCCAGATTCGGTCCTCTAATGAAT 60.504 45.833 0.00 0.00 32.30 2.57
1343 1388 5.615289 CCAGATTCGGTCCTCTAATGAATT 58.385 41.667 0.00 0.00 29.93 2.17
1344 1389 6.058183 CCAGATTCGGTCCTCTAATGAATTT 58.942 40.000 0.00 0.00 29.93 1.82
1345 1390 7.217200 CCAGATTCGGTCCTCTAATGAATTTA 58.783 38.462 0.00 0.00 29.93 1.40
1346 1391 7.386299 CCAGATTCGGTCCTCTAATGAATTTAG 59.614 40.741 0.00 0.00 38.98 1.85
1347 1392 6.931840 AGATTCGGTCCTCTAATGAATTTAGC 59.068 38.462 0.00 0.00 37.75 3.09
1348 1393 5.607939 TCGGTCCTCTAATGAATTTAGCA 57.392 39.130 0.00 0.00 37.75 3.49
1349 1394 5.357257 TCGGTCCTCTAATGAATTTAGCAC 58.643 41.667 0.00 0.00 37.75 4.40
1350 1395 4.209288 CGGTCCTCTAATGAATTTAGCACG 59.791 45.833 0.00 0.00 37.75 5.34
1351 1396 5.357257 GGTCCTCTAATGAATTTAGCACGA 58.643 41.667 0.00 0.00 37.75 4.35
1352 1397 5.992217 GGTCCTCTAATGAATTTAGCACGAT 59.008 40.000 0.00 0.00 37.75 3.73
1407 1452 6.313411 TCAACTGACCAAATTCTTGCTTTTTG 59.687 34.615 0.00 0.00 0.00 2.44
1432 1478 4.695217 TGGTAAACCTCGCAAATTCATC 57.305 40.909 0.02 0.00 36.82 2.92
1440 1486 3.173599 CTCGCAAATTCATCGCAAACAT 58.826 40.909 0.00 0.00 0.00 2.71
1441 1487 4.341935 CTCGCAAATTCATCGCAAACATA 58.658 39.130 0.00 0.00 0.00 2.29
1442 1488 4.341935 TCGCAAATTCATCGCAAACATAG 58.658 39.130 0.00 0.00 0.00 2.23
1465 1511 4.627611 AGTAGTACGCTTTAATCTCGCA 57.372 40.909 0.00 0.00 0.00 5.10
1479 1525 4.326058 CGCAAATCTGTTCGCGTC 57.674 55.556 5.77 1.06 42.66 5.19
1480 1526 1.575132 CGCAAATCTGTTCGCGTCG 60.575 57.895 5.77 0.00 42.66 5.12
1481 1527 1.225745 GCAAATCTGTTCGCGTCGG 60.226 57.895 5.77 6.27 0.00 4.79
1482 1528 1.225745 CAAATCTGTTCGCGTCGGC 60.226 57.895 5.77 0.00 0.00 5.54
1518 1564 7.098074 ACTATTTACTAGTGTGTCTACCTGC 57.902 40.000 5.39 0.00 39.28 4.85
1519 1565 6.890814 ACTATTTACTAGTGTGTCTACCTGCT 59.109 38.462 5.39 0.00 39.28 4.24
1541 1588 9.739276 CTGCTCCAAATTCCAACCTATATATAA 57.261 33.333 0.00 0.00 0.00 0.98
1561 1609 6.996180 ATAACCTATAAGCAGCTCCAGTTA 57.004 37.500 0.00 0.85 0.00 2.24
1604 1653 1.886886 TTCGGTACTGTTTTCTGGCC 58.113 50.000 0.00 0.00 0.00 5.36
1618 1667 1.142870 TCTGGCCGGAATTTATCCCTG 59.857 52.381 13.31 0.00 46.39 4.45
1635 1686 1.204704 CCTGGCGTGTAAGACTGATCA 59.795 52.381 0.00 0.00 0.00 2.92
1636 1687 2.263077 CTGGCGTGTAAGACTGATCAC 58.737 52.381 0.00 0.00 0.00 3.06
1637 1688 1.616374 TGGCGTGTAAGACTGATCACA 59.384 47.619 0.00 0.00 0.00 3.58
1760 1811 1.902508 TCTGTCATGGGTTCCTCAGAC 59.097 52.381 0.00 0.00 0.00 3.51
1947 1998 1.472662 CCACCAGTCCACCTCGTTCT 61.473 60.000 0.00 0.00 0.00 3.01
1949 2000 1.129058 ACCAGTCCACCTCGTTCTTT 58.871 50.000 0.00 0.00 0.00 2.52
1968 2019 7.693951 CGTTCTTTATACTTTGCTTGATTCTGG 59.306 37.037 0.00 0.00 0.00 3.86
2195 2310 2.799412 CAGTCAGAAGCCAGCGATTATC 59.201 50.000 0.00 0.00 0.00 1.75
2354 2469 5.926542 TCTAACAGCTACAGATGTGTGAAAC 59.073 40.000 5.61 0.00 44.74 2.78
2412 2527 2.515854 AGGATACGACACACTCACAGT 58.484 47.619 0.00 0.00 46.39 3.55
2428 2544 7.399523 CACTCACAGTGTACTTTGTTTTAGAC 58.600 38.462 0.00 0.00 41.19 2.59
2434 2550 8.545420 ACAGTGTACTTTGTTTTAGACATAACG 58.455 33.333 0.00 0.00 38.26 3.18
2435 2551 8.007716 CAGTGTACTTTGTTTTAGACATAACGG 58.992 37.037 0.00 0.00 38.26 4.44
2443 2559 8.449251 TTGTTTTAGACATAACGGTTTTAGGT 57.551 30.769 0.00 0.00 38.26 3.08
2579 2695 1.068402 TGCATGCTTGAAATGGTGACG 60.068 47.619 20.33 0.00 0.00 4.35
2652 2768 8.470002 AGAAAATTTCTGAAGTAAGTGCTTTGT 58.530 29.630 7.53 0.00 38.91 2.83
2672 2788 2.039879 GTGGTCCACAAAGTACCCATCT 59.960 50.000 17.59 0.00 34.08 2.90
3065 3197 7.702348 CCAAGAAACCTCTTTCAACAAACTTAG 59.298 37.037 0.00 0.00 40.05 2.18
3079 3211 9.653287 TCAACAAACTTAGTACTTCATCCTATG 57.347 33.333 0.00 0.00 0.00 2.23
3121 3254 4.580995 TCAGGTTGTTTTAAGAATGCCGAA 59.419 37.500 0.00 0.00 0.00 4.30
3333 3803 3.019564 GCCACAGCTACATCTCCAAAAT 58.980 45.455 0.00 0.00 35.50 1.82
3334 3804 3.445096 GCCACAGCTACATCTCCAAAATT 59.555 43.478 0.00 0.00 35.50 1.82
3391 3862 2.919602 AGGATAGTTCTGCTTTCCCCAA 59.080 45.455 0.00 0.00 43.63 4.12
3408 3879 3.452627 CCCCAAGCTAGTGTATCTTCAGT 59.547 47.826 0.00 0.00 0.00 3.41
3411 3882 5.352569 CCCAAGCTAGTGTATCTTCAGTTTG 59.647 44.000 0.00 0.00 0.00 2.93
3532 4003 4.455533 TGATGATGGTGAAAGTTAGTGCAC 59.544 41.667 9.40 9.40 0.00 4.57
3567 4040 5.964758 TCATTGATTGAGTAATTGGTTGGC 58.035 37.500 0.00 0.00 0.00 4.52
3646 4119 7.961325 TTGAATGCTAAAATTTTCCTGGTTC 57.039 32.000 6.72 7.63 0.00 3.62
3649 4122 4.488770 TGCTAAAATTTTCCTGGTTCCCT 58.511 39.130 6.72 0.00 0.00 4.20
3651 4124 4.322725 GCTAAAATTTTCCTGGTTCCCTGG 60.323 45.833 6.72 0.00 42.93 4.45
3785 4327 7.595819 AAACCAAGTTTATCTCCATCAACAA 57.404 32.000 0.00 0.00 33.70 2.83
3842 4385 4.937201 AAACATTCTCCACCCAGAAAAC 57.063 40.909 0.00 0.00 35.99 2.43
3844 4387 2.447047 ACATTCTCCACCCAGAAAACCT 59.553 45.455 0.00 0.00 35.99 3.50
3849 4392 1.072648 TCCACCCAGAAAACCTAACCG 59.927 52.381 0.00 0.00 0.00 4.44
3883 4431 0.034896 ACGGGTCAAAAGTGATCGCT 59.965 50.000 2.02 2.02 35.52 4.93
3890 4438 3.251004 GTCAAAAGTGATCGCTGGAAAGT 59.749 43.478 10.09 0.00 35.80 2.66
3891 4439 3.250762 TCAAAAGTGATCGCTGGAAAGTG 59.749 43.478 10.09 2.64 0.00 3.16
3893 4441 0.976641 AGTGATCGCTGGAAAGTGGA 59.023 50.000 8.28 0.00 0.00 4.02
3894 4442 1.347707 AGTGATCGCTGGAAAGTGGAA 59.652 47.619 8.28 0.00 0.00 3.53
3895 4443 2.151202 GTGATCGCTGGAAAGTGGAAA 58.849 47.619 0.00 0.00 0.00 3.13
3896 4444 2.160417 GTGATCGCTGGAAAGTGGAAAG 59.840 50.000 0.00 0.00 0.00 2.62
3897 4445 2.224523 TGATCGCTGGAAAGTGGAAAGT 60.225 45.455 0.00 0.00 0.00 2.66
3898 4446 1.878953 TCGCTGGAAAGTGGAAAGTC 58.121 50.000 0.00 0.00 0.00 3.01
3899 4447 1.140052 TCGCTGGAAAGTGGAAAGTCA 59.860 47.619 0.00 0.00 0.00 3.41
3900 4448 1.946768 CGCTGGAAAGTGGAAAGTCAA 59.053 47.619 0.00 0.00 0.00 3.18
3901 4449 2.357637 CGCTGGAAAGTGGAAAGTCAAA 59.642 45.455 0.00 0.00 0.00 2.69
3902 4450 3.181491 CGCTGGAAAGTGGAAAGTCAAAA 60.181 43.478 0.00 0.00 0.00 2.44
3903 4451 4.363138 GCTGGAAAGTGGAAAGTCAAAAG 58.637 43.478 0.00 0.00 0.00 2.27
3904 4452 4.142160 GCTGGAAAGTGGAAAGTCAAAAGT 60.142 41.667 0.00 0.00 0.00 2.66
3905 4453 5.323371 TGGAAAGTGGAAAGTCAAAAGTG 57.677 39.130 0.00 0.00 0.00 3.16
3906 4454 5.013547 TGGAAAGTGGAAAGTCAAAAGTGA 58.986 37.500 0.00 0.00 0.00 3.41
3942 4490 7.106890 TCCGTTCACAAATATAAGATGTTCCA 58.893 34.615 0.00 0.00 0.00 3.53
3953 4501 6.918067 ATAAGATGTTCCATCCGATCTACA 57.082 37.500 0.74 0.00 0.00 2.74
3954 4502 4.592485 AGATGTTCCATCCGATCTACAC 57.408 45.455 0.74 0.00 0.00 2.90
3955 4503 3.322254 AGATGTTCCATCCGATCTACACC 59.678 47.826 0.74 0.00 0.00 4.16
4001 4555 4.175787 ACATTCTAGAGACCGTGTCAAC 57.824 45.455 0.00 1.56 34.60 3.18
4240 4807 9.678260 GATGAGCATCCCTCTATAAATACAATT 57.322 33.333 0.00 0.00 41.35 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.212935 GGGCACATTCAGGTACCTCAT 59.787 52.381 12.84 4.18 0.00 2.90
96 97 1.278127 CTGAGTGACCGGTATTTGGGT 59.722 52.381 7.34 0.00 39.83 4.51
97 98 1.278127 ACTGAGTGACCGGTATTTGGG 59.722 52.381 7.34 0.00 0.00 4.12
116 117 3.332761 TGAATGTGCAAAACGAGTCAC 57.667 42.857 0.00 0.00 0.00 3.67
138 139 5.758296 TCTGCGGGACAACATTAAGAATATC 59.242 40.000 0.00 0.00 0.00 1.63
158 159 0.035630 AGGTTCTCCACAGCATCTGC 60.036 55.000 0.00 0.00 34.37 4.26
162 163 3.327757 TCAGTAAAGGTTCTCCACAGCAT 59.672 43.478 0.00 0.00 35.89 3.79
165 166 6.693315 TTTTTCAGTAAAGGTTCTCCACAG 57.307 37.500 0.00 0.00 35.89 3.66
174 175 9.462606 AAATCCTCGATATTTTTCAGTAAAGGT 57.537 29.630 0.00 0.00 0.00 3.50
189 190 9.788960 CGAGTAAATCATGATAAATCCTCGATA 57.211 33.333 24.11 2.91 40.16 2.92
195 196 7.360438 GGACAGCGAGTAAATCATGATAAATCC 60.360 40.741 9.04 4.28 0.00 3.01
210 211 2.049767 TGCATCGGGACAGCGAGTA 61.050 57.895 0.00 0.00 0.00 2.59
219 220 3.138304 GTTATATTGCAGTGCATCGGGA 58.862 45.455 20.50 3.30 38.76 5.14
222 223 3.809279 TGGAGTTATATTGCAGTGCATCG 59.191 43.478 20.50 0.00 38.76 3.84
228 229 5.179452 ACCTGTTGGAGTTATATTGCAGT 57.821 39.130 0.00 0.00 37.04 4.40
229 230 6.150976 TCAAACCTGTTGGAGTTATATTGCAG 59.849 38.462 0.00 0.00 37.04 4.41
231 232 6.509418 TCAAACCTGTTGGAGTTATATTGC 57.491 37.500 0.00 0.00 37.04 3.56
238 239 3.119137 GCAGTTTCAAACCTGTTGGAGTT 60.119 43.478 0.00 0.00 37.04 3.01
239 240 2.427095 GCAGTTTCAAACCTGTTGGAGT 59.573 45.455 0.00 0.00 37.04 3.85
246 247 2.030805 GGCAGTAGCAGTTTCAAACCTG 60.031 50.000 0.00 0.00 44.61 4.00
259 260 1.132500 AGTAATGAGGGGGCAGTAGC 58.868 55.000 0.00 0.00 41.10 3.58
261 262 3.206866 AGTCTAGTAATGAGGGGGCAGTA 59.793 47.826 0.00 0.00 0.00 2.74
278 279 7.847096 TGATAGCCTGTTGTTATTCAAGTCTA 58.153 34.615 0.00 0.00 36.66 2.59
328 329 4.643387 GGCACCAACAGCTCCGGT 62.643 66.667 0.00 0.00 0.00 5.28
331 332 2.983725 AAGGTGGCACCAACAGCTCC 62.984 60.000 36.28 8.21 45.05 4.70
339 340 1.852157 AGGGATCAAGGTGGCACCA 60.852 57.895 36.28 18.39 41.95 4.17
341 342 1.077429 GGAGGGATCAAGGTGGCAC 60.077 63.158 9.70 9.70 0.00 5.01
357 358 2.250924 TCTCAGTCATCAGTGCTTGGA 58.749 47.619 0.00 0.00 0.00 3.53
366 367 6.591935 ACTTAAAACCAGTTCTCAGTCATCA 58.408 36.000 0.00 0.00 0.00 3.07
372 373 5.179555 GTGCCTACTTAAAACCAGTTCTCAG 59.820 44.000 0.00 0.00 0.00 3.35
387 388 4.716003 GGCCTTTCGTGCCTACTT 57.284 55.556 0.00 0.00 45.70 2.24
431 432 1.931635 GTTTAAACCATCCAGGGGCA 58.068 50.000 7.12 0.00 43.89 5.36
443 444 5.410132 GGAGAGAAGCTTGAGAGGTTTAAAC 59.590 44.000 2.10 9.98 43.27 2.01
444 445 5.071788 TGGAGAGAAGCTTGAGAGGTTTAAA 59.928 40.000 2.10 0.00 43.27 1.52
445 446 4.593206 TGGAGAGAAGCTTGAGAGGTTTAA 59.407 41.667 2.10 0.00 43.27 1.52
446 447 4.160329 TGGAGAGAAGCTTGAGAGGTTTA 58.840 43.478 2.10 0.00 43.27 2.01
447 448 2.975489 TGGAGAGAAGCTTGAGAGGTTT 59.025 45.455 2.10 0.00 43.27 3.27
448 449 2.614259 TGGAGAGAAGCTTGAGAGGTT 58.386 47.619 2.10 0.00 45.73 3.50
449 450 2.317371 TGGAGAGAAGCTTGAGAGGT 57.683 50.000 2.10 0.00 34.43 3.85
450 451 3.910568 AATGGAGAGAAGCTTGAGAGG 57.089 47.619 2.10 0.00 0.00 3.69
451 452 8.954950 TTATTTAATGGAGAGAAGCTTGAGAG 57.045 34.615 2.10 0.00 0.00 3.20
452 453 9.739276 TTTTATTTAATGGAGAGAAGCTTGAGA 57.261 29.630 2.10 0.00 0.00 3.27
453 454 9.780413 GTTTTATTTAATGGAGAGAAGCTTGAG 57.220 33.333 2.10 0.00 0.00 3.02
454 455 9.295825 TGTTTTATTTAATGGAGAGAAGCTTGA 57.704 29.630 2.10 0.00 0.00 3.02
455 456 9.565213 CTGTTTTATTTAATGGAGAGAAGCTTG 57.435 33.333 2.10 0.00 0.00 4.01
456 457 9.520515 TCTGTTTTATTTAATGGAGAGAAGCTT 57.479 29.630 0.00 0.00 0.00 3.74
457 458 9.171877 CTCTGTTTTATTTAATGGAGAGAAGCT 57.828 33.333 0.00 0.00 0.00 3.74
458 459 9.167311 TCTCTGTTTTATTTAATGGAGAGAAGC 57.833 33.333 0.00 0.00 33.48 3.86
466 467 9.760660 CGTCTCTTTCTCTGTTTTATTTAATGG 57.239 33.333 0.00 0.00 0.00 3.16
467 468 9.760660 CCGTCTCTTTCTCTGTTTTATTTAATG 57.239 33.333 0.00 0.00 0.00 1.90
468 469 9.720769 TCCGTCTCTTTCTCTGTTTTATTTAAT 57.279 29.630 0.00 0.00 0.00 1.40
469 470 9.204570 CTCCGTCTCTTTCTCTGTTTTATTTAA 57.795 33.333 0.00 0.00 0.00 1.52
470 471 7.331193 GCTCCGTCTCTTTCTCTGTTTTATTTA 59.669 37.037 0.00 0.00 0.00 1.40
471 472 6.147985 GCTCCGTCTCTTTCTCTGTTTTATTT 59.852 38.462 0.00 0.00 0.00 1.40
472 473 5.639931 GCTCCGTCTCTTTCTCTGTTTTATT 59.360 40.000 0.00 0.00 0.00 1.40
473 474 5.046950 AGCTCCGTCTCTTTCTCTGTTTTAT 60.047 40.000 0.00 0.00 0.00 1.40
474 475 4.281182 AGCTCCGTCTCTTTCTCTGTTTTA 59.719 41.667 0.00 0.00 0.00 1.52
475 476 3.070302 AGCTCCGTCTCTTTCTCTGTTTT 59.930 43.478 0.00 0.00 0.00 2.43
476 477 2.630580 AGCTCCGTCTCTTTCTCTGTTT 59.369 45.455 0.00 0.00 0.00 2.83
477 478 2.029470 CAGCTCCGTCTCTTTCTCTGTT 60.029 50.000 0.00 0.00 0.00 3.16
478 479 1.543802 CAGCTCCGTCTCTTTCTCTGT 59.456 52.381 0.00 0.00 0.00 3.41
479 480 1.815613 TCAGCTCCGTCTCTTTCTCTG 59.184 52.381 0.00 0.00 0.00 3.35
480 481 2.208132 TCAGCTCCGTCTCTTTCTCT 57.792 50.000 0.00 0.00 0.00 3.10
481 482 2.425312 TGATCAGCTCCGTCTCTTTCTC 59.575 50.000 0.00 0.00 0.00 2.87
482 483 2.451490 TGATCAGCTCCGTCTCTTTCT 58.549 47.619 0.00 0.00 0.00 2.52
483 484 2.949451 TGATCAGCTCCGTCTCTTTC 57.051 50.000 0.00 0.00 0.00 2.62
484 485 3.068873 GGTATGATCAGCTCCGTCTCTTT 59.931 47.826 0.09 0.00 0.00 2.52
485 486 2.625790 GGTATGATCAGCTCCGTCTCTT 59.374 50.000 0.09 0.00 0.00 2.85
486 487 2.235016 GGTATGATCAGCTCCGTCTCT 58.765 52.381 0.09 0.00 0.00 3.10
487 488 1.271102 GGGTATGATCAGCTCCGTCTC 59.729 57.143 0.09 0.00 0.00 3.36
488 489 1.333177 GGGTATGATCAGCTCCGTCT 58.667 55.000 0.09 0.00 0.00 4.18
489 490 1.040646 TGGGTATGATCAGCTCCGTC 58.959 55.000 0.09 0.00 0.00 4.79
490 491 1.722034 ATGGGTATGATCAGCTCCGT 58.278 50.000 0.09 0.83 0.00 4.69
491 492 3.961480 TTATGGGTATGATCAGCTCCG 57.039 47.619 0.09 0.00 0.00 4.63
492 493 7.341805 ACATTATTATGGGTATGATCAGCTCC 58.658 38.462 0.09 3.39 36.01 4.70
493 494 7.497249 GGACATTATTATGGGTATGATCAGCTC 59.503 40.741 0.09 0.00 36.01 4.09
494 495 7.037370 TGGACATTATTATGGGTATGATCAGCT 60.037 37.037 0.09 0.00 36.01 4.24
495 496 7.066284 GTGGACATTATTATGGGTATGATCAGC 59.934 40.741 0.09 0.00 36.01 4.26
496 497 7.554118 GGTGGACATTATTATGGGTATGATCAG 59.446 40.741 0.09 0.00 36.01 2.90
497 498 7.402054 GGTGGACATTATTATGGGTATGATCA 58.598 38.462 0.00 0.00 36.01 2.92
498 499 6.828785 GGGTGGACATTATTATGGGTATGATC 59.171 42.308 0.00 0.00 36.01 2.92
499 500 6.276806 TGGGTGGACATTATTATGGGTATGAT 59.723 38.462 0.00 0.00 36.01 2.45
500 501 5.613116 TGGGTGGACATTATTATGGGTATGA 59.387 40.000 0.00 0.00 36.01 2.15
501 502 5.710099 GTGGGTGGACATTATTATGGGTATG 59.290 44.000 0.00 0.00 36.01 2.39
502 503 5.615261 AGTGGGTGGACATTATTATGGGTAT 59.385 40.000 0.00 0.00 36.01 2.73
503 504 4.979039 AGTGGGTGGACATTATTATGGGTA 59.021 41.667 0.00 0.00 36.01 3.69
504 505 3.791545 AGTGGGTGGACATTATTATGGGT 59.208 43.478 0.00 0.00 36.01 4.51
505 506 4.144297 CAGTGGGTGGACATTATTATGGG 58.856 47.826 0.00 0.00 36.01 4.00
506 507 4.792068 ACAGTGGGTGGACATTATTATGG 58.208 43.478 0.00 0.00 36.01 2.74
507 508 5.652014 ACAACAGTGGGTGGACATTATTATG 59.348 40.000 0.00 0.00 37.79 1.90
508 509 5.652014 CACAACAGTGGGTGGACATTATTAT 59.348 40.000 8.81 0.00 0.00 1.28
509 510 5.007034 CACAACAGTGGGTGGACATTATTA 58.993 41.667 8.81 0.00 0.00 0.98
510 511 3.826157 CACAACAGTGGGTGGACATTATT 59.174 43.478 8.81 0.00 0.00 1.40
511 512 3.073798 TCACAACAGTGGGTGGACATTAT 59.926 43.478 14.76 0.00 35.74 1.28
512 513 2.439880 TCACAACAGTGGGTGGACATTA 59.560 45.455 14.76 0.00 35.74 1.90
513 514 1.214175 TCACAACAGTGGGTGGACATT 59.786 47.619 14.76 0.00 35.74 2.71
514 515 0.843309 TCACAACAGTGGGTGGACAT 59.157 50.000 14.76 0.00 35.74 3.06
515 516 0.621082 TTCACAACAGTGGGTGGACA 59.379 50.000 14.76 0.85 35.74 4.02
516 517 1.608590 CATTCACAACAGTGGGTGGAC 59.391 52.381 14.76 0.00 35.74 4.02
517 518 1.214175 ACATTCACAACAGTGGGTGGA 59.786 47.619 14.76 8.59 35.74 4.02
518 519 1.608590 GACATTCACAACAGTGGGTGG 59.391 52.381 14.76 4.57 35.74 4.61
519 520 1.608590 GGACATTCACAACAGTGGGTG 59.391 52.381 10.08 10.08 34.04 4.61
520 521 1.214175 TGGACATTCACAACAGTGGGT 59.786 47.619 0.00 0.00 34.04 4.51
521 522 1.608590 GTGGACATTCACAACAGTGGG 59.391 52.381 0.00 0.00 37.57 4.61
522 523 1.608590 GGTGGACATTCACAACAGTGG 59.391 52.381 0.00 0.00 39.27 4.00
523 524 1.608590 GGGTGGACATTCACAACAGTG 59.391 52.381 0.00 0.00 39.27 3.66
524 525 1.214175 TGGGTGGACATTCACAACAGT 59.786 47.619 0.00 0.00 39.27 3.55
525 526 1.608590 GTGGGTGGACATTCACAACAG 59.391 52.381 0.00 0.00 39.27 3.16
526 527 1.214175 AGTGGGTGGACATTCACAACA 59.786 47.619 9.45 0.00 39.27 3.33
527 528 1.608590 CAGTGGGTGGACATTCACAAC 59.391 52.381 9.45 0.00 39.27 3.32
528 529 1.214175 ACAGTGGGTGGACATTCACAA 59.786 47.619 0.00 0.00 39.27 3.33
529 530 0.843309 ACAGTGGGTGGACATTCACA 59.157 50.000 0.00 0.00 39.27 3.58
530 531 1.608590 CAACAGTGGGTGGACATTCAC 59.391 52.381 0.00 0.00 36.95 3.18
531 532 1.214175 ACAACAGTGGGTGGACATTCA 59.786 47.619 0.00 0.00 0.00 2.57
532 533 1.608590 CACAACAGTGGGTGGACATTC 59.391 52.381 8.81 0.00 0.00 2.67
533 534 1.214175 TCACAACAGTGGGTGGACATT 59.786 47.619 14.76 0.00 35.74 2.71
534 535 0.843309 TCACAACAGTGGGTGGACAT 59.157 50.000 14.76 0.00 35.74 3.06
535 536 0.180171 CTCACAACAGTGGGTGGACA 59.820 55.000 14.76 0.00 35.74 4.02
536 537 0.468226 TCTCACAACAGTGGGTGGAC 59.532 55.000 14.76 0.00 35.24 4.02
537 538 1.140852 CTTCTCACAACAGTGGGTGGA 59.859 52.381 14.76 9.54 35.24 4.02
538 539 1.597742 CTTCTCACAACAGTGGGTGG 58.402 55.000 14.76 7.84 35.24 4.61
539 540 0.947244 GCTTCTCACAACAGTGGGTG 59.053 55.000 10.08 10.08 35.24 4.61
540 541 0.179018 GGCTTCTCACAACAGTGGGT 60.179 55.000 0.00 0.00 35.24 4.51
541 542 0.890996 GGGCTTCTCACAACAGTGGG 60.891 60.000 0.00 0.00 35.00 4.61
542 543 0.179020 TGGGCTTCTCACAACAGTGG 60.179 55.000 0.00 0.00 34.04 4.00
543 544 1.334869 GTTGGGCTTCTCACAACAGTG 59.665 52.381 5.27 0.00 42.88 3.66
544 545 1.212935 AGTTGGGCTTCTCACAACAGT 59.787 47.619 11.90 0.00 45.08 3.55
545 546 1.605710 CAGTTGGGCTTCTCACAACAG 59.394 52.381 11.90 0.97 45.08 3.16
546 547 1.211703 TCAGTTGGGCTTCTCACAACA 59.788 47.619 11.90 0.00 45.08 3.33
547 548 1.967319 TCAGTTGGGCTTCTCACAAC 58.033 50.000 2.07 2.07 43.50 3.32
548 549 2.727123 TTCAGTTGGGCTTCTCACAA 57.273 45.000 0.00 0.00 0.00 3.33
549 550 2.106338 TGATTCAGTTGGGCTTCTCACA 59.894 45.455 0.00 0.00 0.00 3.58
550 551 2.783135 TGATTCAGTTGGGCTTCTCAC 58.217 47.619 0.00 0.00 0.00 3.51
551 552 3.726557 ATGATTCAGTTGGGCTTCTCA 57.273 42.857 0.00 0.00 0.00 3.27
552 553 6.501781 CAATAATGATTCAGTTGGGCTTCTC 58.498 40.000 0.00 0.00 0.00 2.87
553 554 5.163478 GCAATAATGATTCAGTTGGGCTTCT 60.163 40.000 0.00 0.00 0.00 2.85
554 555 5.045872 GCAATAATGATTCAGTTGGGCTTC 58.954 41.667 0.00 0.00 0.00 3.86
555 556 4.141869 GGCAATAATGATTCAGTTGGGCTT 60.142 41.667 0.00 0.00 0.00 4.35
556 557 3.385755 GGCAATAATGATTCAGTTGGGCT 59.614 43.478 0.00 0.00 0.00 5.19
557 558 3.493176 GGGCAATAATGATTCAGTTGGGC 60.493 47.826 0.00 0.00 0.00 5.36
558 559 3.243501 CGGGCAATAATGATTCAGTTGGG 60.244 47.826 0.00 0.00 0.00 4.12
559 560 3.631686 TCGGGCAATAATGATTCAGTTGG 59.368 43.478 0.00 0.00 0.00 3.77
560 561 4.898829 TCGGGCAATAATGATTCAGTTG 57.101 40.909 0.00 0.00 0.00 3.16
561 562 5.192927 TCTTCGGGCAATAATGATTCAGTT 58.807 37.500 0.00 0.00 0.00 3.16
562 563 4.780815 TCTTCGGGCAATAATGATTCAGT 58.219 39.130 0.00 0.00 0.00 3.41
563 564 5.954296 ATCTTCGGGCAATAATGATTCAG 57.046 39.130 0.00 0.00 0.00 3.02
564 565 5.412594 GCTATCTTCGGGCAATAATGATTCA 59.587 40.000 0.00 0.00 0.00 2.57
565 566 5.163713 GGCTATCTTCGGGCAATAATGATTC 60.164 44.000 0.00 0.00 0.00 2.52
566 567 4.702131 GGCTATCTTCGGGCAATAATGATT 59.298 41.667 0.00 0.00 0.00 2.57
567 568 4.265073 GGCTATCTTCGGGCAATAATGAT 58.735 43.478 0.00 0.00 0.00 2.45
568 569 3.559171 GGGCTATCTTCGGGCAATAATGA 60.559 47.826 0.00 0.00 0.00 2.57
569 570 2.749621 GGGCTATCTTCGGGCAATAATG 59.250 50.000 0.00 0.00 0.00 1.90
570 571 2.615493 CGGGCTATCTTCGGGCAATAAT 60.615 50.000 0.00 0.00 0.00 1.28
571 572 1.270625 CGGGCTATCTTCGGGCAATAA 60.271 52.381 0.00 0.00 0.00 1.40
572 573 0.320374 CGGGCTATCTTCGGGCAATA 59.680 55.000 0.00 0.00 0.00 1.90
573 574 1.071471 CGGGCTATCTTCGGGCAAT 59.929 57.895 0.00 0.00 0.00 3.56
574 575 2.504032 CGGGCTATCTTCGGGCAA 59.496 61.111 0.00 0.00 0.00 4.52
575 576 3.546543 CCGGGCTATCTTCGGGCA 61.547 66.667 0.00 0.00 40.07 5.36
576 577 4.990553 GCCGGGCTATCTTCGGGC 62.991 72.222 12.87 0.00 43.55 6.13
577 578 4.664677 CGCCGGGCTATCTTCGGG 62.665 72.222 18.34 0.00 43.55 5.14
578 579 4.664677 CCGCCGGGCTATCTTCGG 62.665 72.222 18.34 4.87 45.84 4.30
579 580 3.602677 TCCGCCGGGCTATCTTCG 61.603 66.667 18.34 0.00 0.00 3.79
580 581 2.029221 GTCCGCCGGGCTATCTTC 59.971 66.667 18.34 0.00 0.00 2.87
581 582 3.547513 GGTCCGCCGGGCTATCTT 61.548 66.667 18.34 0.00 0.00 2.40
596 597 1.985895 CAGAACCTTGAACTAGGGGGT 59.014 52.381 7.16 0.00 39.76 4.95
729 732 1.049402 GGAACTCGGGATTCTAGGGG 58.951 60.000 0.00 0.00 0.00 4.79
745 748 1.078708 GATCTGAAACGGCCGGGAA 60.079 57.895 31.76 11.08 0.00 3.97
777 780 1.003718 GTGGAGGTCGTTGGGGAAG 60.004 63.158 0.00 0.00 0.00 3.46
824 828 4.389576 GAGTGCGTGCGCTTTGGG 62.390 66.667 17.49 0.00 42.51 4.12
827 831 4.626081 AGGGAGTGCGTGCGCTTT 62.626 61.111 17.49 5.68 42.51 3.51
831 835 4.498520 ATCGAGGGAGTGCGTGCG 62.499 66.667 0.00 0.00 0.00 5.34
832 836 2.583593 GATCGAGGGAGTGCGTGC 60.584 66.667 0.00 0.00 0.00 5.34
833 837 2.105128 GGATCGAGGGAGTGCGTG 59.895 66.667 0.00 0.00 0.00 5.34
834 838 3.148279 GGGATCGAGGGAGTGCGT 61.148 66.667 0.00 0.00 0.00 5.24
835 839 3.917760 GGGGATCGAGGGAGTGCG 61.918 72.222 0.00 0.00 0.00 5.34
836 840 2.105806 GATGGGGATCGAGGGAGTGC 62.106 65.000 0.00 0.00 0.00 4.40
837 841 1.476007 GGATGGGGATCGAGGGAGTG 61.476 65.000 0.00 0.00 0.00 3.51
838 842 1.152226 GGATGGGGATCGAGGGAGT 60.152 63.158 0.00 0.00 0.00 3.85
839 843 0.764369 TTGGATGGGGATCGAGGGAG 60.764 60.000 0.00 0.00 0.00 4.30
840 844 0.764369 CTTGGATGGGGATCGAGGGA 60.764 60.000 0.00 0.00 0.00 4.20
853 857 0.747255 CGTCGGATCTGGACTTGGAT 59.253 55.000 0.62 0.00 32.24 3.41
860 864 3.458163 GTGGCCGTCGGATCTGGA 61.458 66.667 17.49 0.00 0.00 3.86
1094 1099 0.322277 ACTCGACGAGGACAAGGCTA 60.322 55.000 27.39 0.00 33.35 3.93
1095 1100 1.604023 ACTCGACGAGGACAAGGCT 60.604 57.895 27.39 2.14 33.35 4.58
1139 1164 7.020827 AGAATTAGACATCCAAGGAACAGAA 57.979 36.000 0.00 0.00 0.00 3.02
1263 1299 4.379186 CGAGCAAGAAAAACAGCAGATGAT 60.379 41.667 0.00 0.00 0.00 2.45
1301 1346 1.154301 CCACCAAAATCGAACGCGG 60.154 57.895 12.47 0.00 38.28 6.46
1407 1452 5.044558 TGAATTTGCGAGGTTTACCAAAAC 58.955 37.500 1.13 0.00 43.58 2.43
1432 1478 4.595116 AGCGTACTACTACTATGTTTGCG 58.405 43.478 0.00 0.00 0.00 4.85
1440 1486 6.479990 TGCGAGATTAAAGCGTACTACTACTA 59.520 38.462 0.00 0.00 0.00 1.82
1441 1487 5.295292 TGCGAGATTAAAGCGTACTACTACT 59.705 40.000 0.00 0.00 0.00 2.57
1442 1488 5.505286 TGCGAGATTAAAGCGTACTACTAC 58.495 41.667 0.00 0.00 0.00 2.73
1465 1511 3.165498 GCCGACGCGAACAGATTT 58.835 55.556 15.93 0.00 0.00 2.17
1477 1523 2.883730 TAATGCAGCGACGCCGAC 60.884 61.111 17.79 6.82 38.22 4.79
1479 1525 0.939577 ATAGTAATGCAGCGACGCCG 60.940 55.000 17.79 7.62 39.16 6.46
1480 1526 1.217882 AATAGTAATGCAGCGACGCC 58.782 50.000 17.79 2.18 0.00 5.68
1481 1527 3.489785 AGTAAATAGTAATGCAGCGACGC 59.510 43.478 13.03 13.03 0.00 5.19
1482 1528 5.913514 ACTAGTAAATAGTAATGCAGCGACG 59.086 40.000 0.00 0.00 43.17 5.12
1483 1529 6.696148 ACACTAGTAAATAGTAATGCAGCGAC 59.304 38.462 0.00 0.00 43.13 5.19
1484 1530 6.695713 CACACTAGTAAATAGTAATGCAGCGA 59.304 38.462 0.00 0.00 43.13 4.93
1485 1531 6.475727 ACACACTAGTAAATAGTAATGCAGCG 59.524 38.462 0.00 0.00 43.13 5.18
1516 1562 9.515226 GTTATATATAGGTTGGAATTTGGAGCA 57.485 33.333 0.00 0.00 0.00 4.26
1517 1563 8.957466 GGTTATATATAGGTTGGAATTTGGAGC 58.043 37.037 0.00 0.00 0.00 4.70
1541 1588 5.896073 AATAACTGGAGCTGCTTATAGGT 57.104 39.130 6.82 4.11 0.00 3.08
1604 1653 0.944386 CACGCCAGGGATAAATTCCG 59.056 55.000 0.00 0.00 46.52 4.30
1618 1667 2.263077 CTGTGATCAGTCTTACACGCC 58.737 52.381 0.00 0.00 36.97 5.68
1635 1686 2.872245 CAAGGAACACGTGATGAACTGT 59.128 45.455 25.01 0.00 0.00 3.55
1636 1687 3.130633 TCAAGGAACACGTGATGAACTG 58.869 45.455 25.01 11.69 32.51 3.16
1637 1688 3.469008 TCAAGGAACACGTGATGAACT 57.531 42.857 25.01 9.68 32.51 3.01
1646 1697 4.621034 GCAAAATAACCATCAAGGAACACG 59.379 41.667 0.00 0.00 41.22 4.49
1760 1811 3.181507 CCGTATTCAGTTGTGCCATCTTG 60.182 47.826 0.00 0.00 0.00 3.02
1947 1998 8.405531 GCATACCAGAATCAAGCAAAGTATAAA 58.594 33.333 0.00 0.00 0.00 1.40
1949 2000 7.053498 TGCATACCAGAATCAAGCAAAGTATA 58.947 34.615 0.00 0.00 0.00 1.47
2040 2155 6.126863 TCAGAATGTACTGAATGAAAGGGT 57.873 37.500 0.00 0.00 42.79 4.34
2195 2310 6.432783 TGTTGTCACACTTTAAATCCCTATGG 59.567 38.462 0.00 0.00 0.00 2.74
2313 2428 6.697019 GCTGTTAGAAAAACACAATGTCACAT 59.303 34.615 0.00 0.00 0.00 3.21
2412 2527 8.436046 AACCGTTATGTCTAAAACAAAGTACA 57.564 30.769 0.00 0.00 42.37 2.90
2428 2544 4.939439 ACAAGCCTACCTAAAACCGTTATG 59.061 41.667 0.00 0.00 0.00 1.90
2434 2550 6.466812 TGTTAGTACAAGCCTACCTAAAACC 58.533 40.000 0.00 0.00 0.00 3.27
2435 2551 7.967890 TTGTTAGTACAAGCCTACCTAAAAC 57.032 36.000 0.00 0.00 39.29 2.43
2579 2695 6.564686 CGCATTCACTGTATGGATATTCACAC 60.565 42.308 0.00 0.00 0.00 3.82
2652 2768 2.304761 GAGATGGGTACTTTGTGGACCA 59.695 50.000 0.00 0.00 34.73 4.02
2672 2788 9.113838 GCTGTTTGATAGATAATCTTCAAAGGA 57.886 33.333 9.99 3.00 35.88 3.36
3065 3197 5.011090 TGTGTCAGCATAGGATGAAGTAC 57.989 43.478 0.00 0.00 41.82 2.73
3121 3254 0.107848 GGTCCACATCGAACGGGAAT 60.108 55.000 4.15 0.00 0.00 3.01
3333 3803 2.019249 GCTGCCTGCAGTTCATGATAA 58.981 47.619 19.45 0.00 45.24 1.75
3334 3804 1.211212 AGCTGCCTGCAGTTCATGATA 59.789 47.619 19.45 0.00 45.24 2.15
3391 3862 7.499232 ACAAAACAAACTGAAGATACACTAGCT 59.501 33.333 0.00 0.00 0.00 3.32
3411 3882 7.095649 GGCCAAATTCATCTGACTAAACAAAAC 60.096 37.037 0.00 0.00 0.00 2.43
3560 4033 2.224426 ACATTCGAACTACTGCCAACCA 60.224 45.455 0.00 0.00 0.00 3.67
3561 4034 2.159627 CACATTCGAACTACTGCCAACC 59.840 50.000 0.00 0.00 0.00 3.77
3567 4040 3.594603 AGGGACACATTCGAACTACTG 57.405 47.619 0.00 0.00 0.00 2.74
3646 4119 4.523943 TCAAGTTCATGAATTTCACCAGGG 59.476 41.667 12.12 0.40 0.00 4.45
3820 4362 4.100963 GGTTTTCTGGGTGGAGAATGTTTT 59.899 41.667 0.00 0.00 31.98 2.43
3842 4385 5.117592 CGTAAACTCACACTTTACGGTTAGG 59.882 44.000 13.19 0.00 46.59 2.69
3849 4392 4.370917 TGACCCGTAAACTCACACTTTAC 58.629 43.478 0.00 0.00 32.79 2.01
3883 4431 5.013547 TCACTTTTGACTTTCCACTTTCCA 58.986 37.500 0.00 0.00 0.00 3.53
3897 4445 3.495100 GGAGGAGCTTGAGTCACTTTTGA 60.495 47.826 0.00 0.00 0.00 2.69
3898 4446 2.810852 GGAGGAGCTTGAGTCACTTTTG 59.189 50.000 0.00 0.00 0.00 2.44
3899 4447 2.548920 CGGAGGAGCTTGAGTCACTTTT 60.549 50.000 0.00 0.00 0.00 2.27
3900 4448 1.001406 CGGAGGAGCTTGAGTCACTTT 59.999 52.381 0.00 0.00 0.00 2.66
3901 4449 0.605589 CGGAGGAGCTTGAGTCACTT 59.394 55.000 0.00 0.00 0.00 3.16
3902 4450 0.540830 ACGGAGGAGCTTGAGTCACT 60.541 55.000 0.00 0.00 0.00 3.41
3903 4451 0.318762 AACGGAGGAGCTTGAGTCAC 59.681 55.000 0.00 0.00 0.00 3.67
3904 4452 0.603569 GAACGGAGGAGCTTGAGTCA 59.396 55.000 0.00 0.00 0.00 3.41
3905 4453 0.603569 TGAACGGAGGAGCTTGAGTC 59.396 55.000 0.00 0.00 0.00 3.36
3906 4454 0.318762 GTGAACGGAGGAGCTTGAGT 59.681 55.000 0.00 0.00 0.00 3.41
3907 4455 0.318441 TGTGAACGGAGGAGCTTGAG 59.682 55.000 0.00 0.00 0.00 3.02
3908 4456 0.756294 TTGTGAACGGAGGAGCTTGA 59.244 50.000 0.00 0.00 0.00 3.02
3909 4457 1.593196 TTTGTGAACGGAGGAGCTTG 58.407 50.000 0.00 0.00 0.00 4.01
3910 4458 2.568623 ATTTGTGAACGGAGGAGCTT 57.431 45.000 0.00 0.00 0.00 3.74
3911 4459 3.914426 ATATTTGTGAACGGAGGAGCT 57.086 42.857 0.00 0.00 0.00 4.09
3912 4460 5.357257 TCTTATATTTGTGAACGGAGGAGC 58.643 41.667 0.00 0.00 0.00 4.70
3913 4461 6.986817 ACATCTTATATTTGTGAACGGAGGAG 59.013 38.462 0.00 0.00 0.00 3.69
3914 4462 6.884832 ACATCTTATATTTGTGAACGGAGGA 58.115 36.000 0.00 0.00 0.00 3.71
3942 4490 4.081142 TGTGTCAATTGGTGTAGATCGGAT 60.081 41.667 5.42 0.00 0.00 4.18
3953 4501 0.179032 TGTCGGCTGTGTCAATTGGT 60.179 50.000 5.42 0.00 0.00 3.67
3954 4502 0.950836 TTGTCGGCTGTGTCAATTGG 59.049 50.000 5.42 0.00 0.00 3.16
3955 4503 2.030893 ACATTGTCGGCTGTGTCAATTG 60.031 45.455 0.00 0.00 0.00 2.32
4001 4555 2.104792 TGCTCCCTCGGATCCAAATTAG 59.895 50.000 13.41 4.36 0.00 1.73
4035 4589 6.151312 TGAACAAACACACTAAAACTTGCCTA 59.849 34.615 0.00 0.00 0.00 3.93
4041 4607 7.448748 AAGAGTGAACAAACACACTAAAACT 57.551 32.000 0.00 0.00 45.54 2.66
4111 4678 3.760151 CAGGGAGAATTGAATGTTGCAGA 59.240 43.478 0.00 0.00 0.00 4.26
4240 4807 3.449018 GGAGATCTGCTCTGGTCTTTGTA 59.551 47.826 7.03 0.00 43.43 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.