Multiple sequence alignment - TraesCS5B01G321800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G321800 chr5B 100.000 6510 0 0 1 6510 506794932 506788423 0.000000e+00 12022.0
1 TraesCS5B01G321800 chr5B 98.315 178 3 0 5725 5902 253163017 253163194 4.900000e-81 313.0
2 TraesCS5B01G321800 chr5A 92.988 5191 242 65 590 5729 534122062 534116943 0.000000e+00 7457.0
3 TraesCS5B01G321800 chr5A 87.125 567 29 10 41 596 534130063 534129530 2.600000e-168 603.0
4 TraesCS5B01G321800 chr5A 98.851 174 2 0 5731 5904 135535498 135535671 1.760000e-80 311.0
5 TraesCS5B01G321800 chr5A 86.667 180 20 4 5903 6081 534116962 534116786 5.150000e-46 196.0
6 TraesCS5B01G321800 chr5D 95.613 3579 113 17 2180 5734 420714653 420711095 0.000000e+00 5699.0
7 TraesCS5B01G321800 chr5D 92.177 1240 65 19 980 2195 420715896 420714665 0.000000e+00 1724.0
8 TraesCS5B01G321800 chr5D 86.014 1001 64 33 1 962 420716842 420715879 0.000000e+00 1003.0
9 TraesCS5B01G321800 chr5D 95.620 274 6 1 6235 6508 420710895 420710628 1.000000e-117 435.0
10 TraesCS5B01G321800 chr5D 90.948 232 14 3 5903 6129 420711120 420710891 8.200000e-79 305.0
11 TraesCS5B01G321800 chr5D 96.471 85 3 0 6125 6209 209652143 209652059 2.450000e-29 141.0
12 TraesCS5B01G321800 chr5D 89.286 56 6 0 6125 6180 194527437 194527492 3.260000e-08 71.3
13 TraesCS5B01G321800 chr1B 82.768 737 65 26 1166 1888 4548269 4548957 9.340000e-168 601.0
14 TraesCS5B01G321800 chr1B 98.851 174 2 0 5730 5903 246770706 246770879 1.760000e-80 311.0
15 TraesCS5B01G321800 chr1B 97.268 183 3 2 5730 5910 321238409 321238227 6.340000e-80 309.0
16 TraesCS5B01G321800 chr1B 97.238 181 4 1 5729 5908 158536136 158536316 8.200000e-79 305.0
17 TraesCS5B01G321800 chr1B 98.864 88 1 0 6122 6209 16702907 16702820 2.430000e-34 158.0
18 TraesCS5B01G321800 chr1B 91.111 45 4 0 3007 3051 336392224 336392180 1.960000e-05 62.1
19 TraesCS5B01G321800 chr2A 79.690 645 112 14 3853 4495 501845703 501846330 1.290000e-121 448.0
20 TraesCS5B01G321800 chr2A 78.958 480 81 15 3123 3588 501844936 501845409 6.340000e-80 309.0
21 TraesCS5B01G321800 chr4A 98.295 176 3 0 5725 5900 479322991 479322816 6.340000e-80 309.0
22 TraesCS5B01G321800 chr2D 78.914 479 83 15 3123 3588 371155669 371156142 6.340000e-80 309.0
23 TraesCS5B01G321800 chr2D 94.118 85 5 0 6125 6209 234328749 234328833 5.300000e-26 130.0
24 TraesCS5B01G321800 chr3B 96.739 184 4 2 5730 5911 70583839 70584022 8.200000e-79 305.0
25 TraesCS5B01G321800 chr3B 88.136 118 11 1 6122 6236 467381829 467381946 3.170000e-28 137.0
26 TraesCS5B01G321800 chr3B 86.154 130 9 5 6109 6236 658312988 658312866 1.470000e-26 132.0
27 TraesCS5B01G321800 chrUn 96.721 183 5 1 5728 5910 279937722 279937541 2.950000e-78 303.0
28 TraesCS5B01G321800 chrUn 96.721 183 5 1 5728 5910 292395671 292395490 2.950000e-78 303.0
29 TraesCS5B01G321800 chr2B 78.542 480 84 16 3123 3588 440212231 440212705 1.370000e-76 298.0
30 TraesCS5B01G321800 chr2B 85.827 127 12 3 6125 6248 169092202 169092325 5.300000e-26 130.0
31 TraesCS5B01G321800 chr7A 89.286 112 8 1 6125 6236 155069387 155069280 3.170000e-28 137.0
32 TraesCS5B01G321800 chr7A 87.611 113 11 3 6125 6236 15096540 15096430 1.910000e-25 128.0
33 TraesCS5B01G321800 chr6D 88.034 117 10 1 6125 6237 144029445 144029561 1.140000e-27 135.0
34 TraesCS5B01G321800 chr6D 88.462 52 4 2 3001 3051 386222203 386222253 1.960000e-05 62.1
35 TraesCS5B01G321800 chr1D 87.179 117 10 5 6125 6237 118811994 118811879 1.910000e-25 128.0
36 TraesCS5B01G321800 chr6B 84.127 63 4 5 6199 6258 503547955 503547896 1.000000e-03 56.5
37 TraesCS5B01G321800 chr3A 94.286 35 2 0 3010 3044 461794319 461794353 3.000000e-03 54.7
38 TraesCS5B01G321800 chr4B 100.000 28 0 0 3009 3036 300624926 300624953 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G321800 chr5B 506788423 506794932 6509 True 12022.0 12022 100.0000 1 6510 1 chr5B.!!$R1 6509
1 TraesCS5B01G321800 chr5A 534116786 534122062 5276 True 3826.5 7457 89.8275 590 6081 2 chr5A.!!$R2 5491
2 TraesCS5B01G321800 chr5A 534129530 534130063 533 True 603.0 603 87.1250 41 596 1 chr5A.!!$R1 555
3 TraesCS5B01G321800 chr5D 420710628 420716842 6214 True 1833.2 5699 92.0744 1 6508 5 chr5D.!!$R2 6507
4 TraesCS5B01G321800 chr1B 4548269 4548957 688 False 601.0 601 82.7680 1166 1888 1 chr1B.!!$F1 722
5 TraesCS5B01G321800 chr2A 501844936 501846330 1394 False 378.5 448 79.3240 3123 4495 2 chr2A.!!$F1 1372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1009 0.527817 GTAGTAGTTGCTGCGGCGAT 60.528 55.000 12.98 2.16 42.25 4.58 F
1850 1946 0.916809 CAAGGTCCCCCGGAAGTAAT 59.083 55.000 0.73 0.00 31.38 1.89 F
2416 2553 0.037046 CAATTGCTGAAGGGTTGGCC 60.037 55.000 0.00 0.00 0.00 5.36 F
2562 2699 0.108520 AAATCATGCAGGCAAAGCGG 60.109 50.000 0.00 0.00 33.85 5.52 F
2813 2950 0.329261 TTGGATCTGGAACTGCTGGG 59.671 55.000 0.00 0.00 0.00 4.45 F
4550 4758 3.055385 ACCGCTGTTGTTATATGTCCACT 60.055 43.478 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 2502 0.178992 CACCTGCCTCACCCAAAAGA 60.179 55.000 0.00 0.0 0.0 2.52 R
2813 2950 1.378646 GCCAGCACCCTTACCCTTC 60.379 63.158 0.00 0.0 0.0 3.46 R
3786 3985 2.367567 AGATTACTGTGTGACGGGTTGT 59.632 45.455 0.00 0.0 0.0 3.32 R
4480 4688 3.258622 GGTTAAGTACCTGTGAGTCTGCT 59.741 47.826 0.00 0.0 44.1 4.24 R
4589 4801 1.623811 TCTGCAGGGACAAGTTCTACC 59.376 52.381 15.13 0.0 0.0 3.18 R
5858 6103 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.0 34.1 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.932194 AGCAAGAGAGCAGGGGCA 60.932 61.111 0.00 0.00 44.61 5.36
139 140 4.500125 TGGATCTCCCCCAGAACC 57.500 61.111 0.00 0.00 43.21 3.62
177 181 3.443045 GTTGATGGCCGCTGGGTG 61.443 66.667 0.00 0.00 34.97 4.61
186 190 2.581354 CGCTGGGTGGAAGAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
314 322 4.030452 GCAGACGTGCCCAACTGC 62.030 66.667 8.65 8.65 44.72 4.40
328 336 0.736053 AACTGCGCAAGGAAACGAAA 59.264 45.000 13.05 0.00 37.09 3.46
602 644 3.546714 AACCGCCGTCCCTTTCCTG 62.547 63.158 0.00 0.00 0.00 3.86
646 697 2.282958 TTCTCGTCGCCTCCACCT 60.283 61.111 0.00 0.00 0.00 4.00
648 699 3.827898 CTCGTCGCCTCCACCTCC 61.828 72.222 0.00 0.00 0.00 4.30
649 700 4.671590 TCGTCGCCTCCACCTCCA 62.672 66.667 0.00 0.00 0.00 3.86
655 706 3.775654 CCTCCACCTCCACGCCTC 61.776 72.222 0.00 0.00 0.00 4.70
656 707 3.775654 CTCCACCTCCACGCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
657 708 4.631740 TCCACCTCCACGCCTCCA 62.632 66.667 0.00 0.00 0.00 3.86
658 709 4.394712 CCACCTCCACGCCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
763 814 3.004106 GCAGCAGTACCCATTCATTCATC 59.996 47.826 0.00 0.00 0.00 2.92
765 816 3.202818 AGCAGTACCCATTCATTCATCCA 59.797 43.478 0.00 0.00 0.00 3.41
777 828 0.615331 TTCATCCACTCACCCAGCTC 59.385 55.000 0.00 0.00 0.00 4.09
782 833 1.673665 CACTCACCCAGCTCAAGCC 60.674 63.158 0.00 0.00 43.38 4.35
783 834 1.845205 ACTCACCCAGCTCAAGCCT 60.845 57.895 0.00 0.00 43.38 4.58
786 837 2.037136 CACCCAGCTCAAGCCTTCG 61.037 63.158 0.00 0.00 43.38 3.79
787 838 3.130160 CCCAGCTCAAGCCTTCGC 61.130 66.667 0.00 0.00 43.38 4.70
803 854 2.904131 GCTCCCAGCCCAGTAGAC 59.096 66.667 0.00 0.00 34.48 2.59
830 881 8.687242 ACACACACGTAGATACTACTACTACTA 58.313 37.037 0.00 0.00 40.11 1.82
957 1009 0.527817 GTAGTAGTTGCTGCGGCGAT 60.528 55.000 12.98 2.16 42.25 4.58
1344 1423 3.157949 GGGGGCTTCCTCTCCTCG 61.158 72.222 0.00 0.00 35.33 4.63
1597 1679 5.070580 AGGTAGCTACTCCAATTATGTCCAC 59.929 44.000 22.74 1.06 0.00 4.02
1761 1852 3.900966 TGTGAGCTGAGCACAAGATAT 57.099 42.857 6.06 0.00 42.75 1.63
1841 1937 2.953453 ACAACTAAAACAAGGTCCCCC 58.047 47.619 0.00 0.00 0.00 5.40
1850 1946 0.916809 CAAGGTCCCCCGGAAGTAAT 59.083 55.000 0.73 0.00 31.38 1.89
1897 2003 3.380004 TGTTGGTATTTTCGCCATCATCC 59.620 43.478 0.00 0.00 34.37 3.51
1908 2014 1.607628 GCCATCATCCATCAGACTTGC 59.392 52.381 0.00 0.00 0.00 4.01
1916 2022 5.713389 TCATCCATCAGACTTGCAGAAAAAT 59.287 36.000 0.00 0.00 0.00 1.82
2118 2228 8.357402 GCAAATCCTTGAGTAAAAAGAAAGGTA 58.643 33.333 0.00 0.00 38.81 3.08
2178 2289 6.000840 TCACCTATTTGTGTGTATTGAAGCA 58.999 36.000 0.00 0.00 37.51 3.91
2365 2502 3.306019 GGCGAACAAAGAACAATCCCATT 60.306 43.478 0.00 0.00 0.00 3.16
2380 2517 1.631405 CCATTCTTTTGGGTGAGGCA 58.369 50.000 0.00 0.00 32.80 4.75
2401 2538 4.692228 CAGGTGTTGGTAAAACTGCAATT 58.308 39.130 0.00 0.00 0.00 2.32
2404 2541 4.119136 GTGTTGGTAAAACTGCAATTGCT 58.881 39.130 29.37 12.76 42.66 3.91
2416 2553 0.037046 CAATTGCTGAAGGGTTGGCC 60.037 55.000 0.00 0.00 0.00 5.36
2531 2668 5.746307 TCTCTTGCATGAACATCAATAGC 57.254 39.130 0.00 0.00 0.00 2.97
2532 2669 4.271776 TCTCTTGCATGAACATCAATAGCG 59.728 41.667 0.00 0.00 0.00 4.26
2562 2699 0.108520 AAATCATGCAGGCAAAGCGG 60.109 50.000 0.00 0.00 33.85 5.52
2571 2708 1.003545 CAGGCAAAGCGGATAATGTCG 60.004 52.381 0.00 0.00 0.00 4.35
2613 2750 2.034221 GGCGCAAAAGAGAGGGGT 59.966 61.111 10.83 0.00 0.00 4.95
2646 2783 5.234543 GTCCAGGATCACTAGTTTAATTCGC 59.765 44.000 0.00 0.00 0.00 4.70
2672 2809 1.284982 CGTGAAGCAGGTCAGTTCGG 61.285 60.000 0.00 0.00 0.00 4.30
2687 2824 2.930040 AGTTCGGTCGTAATGCAATCTG 59.070 45.455 0.00 0.00 0.00 2.90
2777 2914 7.182761 CAGGTGATGTTATTCTTTTCATCGAC 58.817 38.462 0.00 0.00 39.33 4.20
2813 2950 0.329261 TTGGATCTGGAACTGCTGGG 59.671 55.000 0.00 0.00 0.00 4.45
2849 2986 4.155644 GCTGGCCTTGATATTAGCAATCTC 59.844 45.833 3.32 0.00 0.00 2.75
2889 3026 4.141620 CCAGAGGTGAACTGCAGGTAATAT 60.142 45.833 19.93 0.00 34.47 1.28
3611 3786 4.704540 TCTTGCACTGGTTATATTGTTGGG 59.295 41.667 0.00 0.00 0.00 4.12
3786 3985 7.015682 ACAATTGAGGAGTAAGTTCTCTCTTGA 59.984 37.037 13.59 0.00 35.11 3.02
4480 4688 6.440010 TCCAAATTTTTGAAGATGGGCATCTA 59.560 34.615 4.63 0.00 42.02 1.98
4550 4758 3.055385 ACCGCTGTTGTTATATGTCCACT 60.055 43.478 0.00 0.00 0.00 4.00
4589 4801 8.883731 ACGATGTATTCTTTTAGAGGTTGAATG 58.116 33.333 0.00 0.00 0.00 2.67
4593 4828 9.667107 TGTATTCTTTTAGAGGTTGAATGGTAG 57.333 33.333 0.00 0.00 0.00 3.18
4623 4858 6.210385 TGTCCCTGCAGATTTTATGCTAAAAA 59.790 34.615 17.39 3.13 44.17 1.94
4710 4945 7.817418 TTAGTGACTTGGTCTTAAGCAATTT 57.183 32.000 0.00 0.00 41.72 1.82
4759 4999 5.104259 ACCTCCCAATGAAGTTAGATGTC 57.896 43.478 0.00 0.00 0.00 3.06
4769 5009 6.048732 TGAAGTTAGATGTCCATAGCACAA 57.951 37.500 0.00 0.00 0.00 3.33
4772 5012 6.992063 AGTTAGATGTCCATAGCACAAAAG 57.008 37.500 0.00 0.00 0.00 2.27
4776 5016 2.422597 TGTCCATAGCACAAAAGTCCG 58.577 47.619 0.00 0.00 0.00 4.79
4777 5017 2.224426 TGTCCATAGCACAAAAGTCCGT 60.224 45.455 0.00 0.00 0.00 4.69
4816 5056 8.860088 ACTTGTTGTTCCATAGCTTTTATCTTT 58.140 29.630 0.00 0.00 0.00 2.52
4850 5090 5.305128 TGGGTCTCTTTGAATGCTGAAAAAT 59.695 36.000 0.00 0.00 0.00 1.82
4936 5176 4.061570 CGTTGGTTCTACGTCAATTTCC 57.938 45.455 0.00 0.00 34.47 3.13
4996 5236 2.796593 CGAATCAAGCAGATATGTCGCA 59.203 45.455 8.45 0.00 35.39 5.10
5021 5261 2.166907 ATCCCTCGTGATGGAAGAGT 57.833 50.000 0.00 0.00 33.54 3.24
5047 5287 4.037927 AGGGATTCTTCCGTCCAGAATTA 58.962 43.478 3.31 0.00 43.63 1.40
5074 5314 3.442625 ACAGAATCGATGAGACGGTTGTA 59.557 43.478 0.00 0.00 36.72 2.41
5114 5354 2.890311 ACTCAGGTCTGTCTCTCACTTG 59.110 50.000 0.00 0.00 0.00 3.16
5132 5372 3.070015 ACTTGCCCCTTTGTTCTGAATTG 59.930 43.478 0.00 0.00 0.00 2.32
5153 5393 3.074412 GGTACCTGACATGGTGAACTTG 58.926 50.000 4.06 0.00 41.05 3.16
5183 5423 3.196469 TCAGACACTAATGCTCTCCTTGG 59.804 47.826 0.00 0.00 0.00 3.61
5353 5593 0.979709 TGAGGAGAGCCATCACCCAG 60.980 60.000 0.00 0.00 36.90 4.45
5377 5617 0.749049 TGGAGGATGTCATCAGCGAG 59.251 55.000 14.72 0.00 0.00 5.03
5522 5762 4.322650 GGACATTCTGAAGTGAAGCTCTCT 60.323 45.833 0.00 0.00 0.00 3.10
5523 5763 4.819769 ACATTCTGAAGTGAAGCTCTCTC 58.180 43.478 0.00 0.00 0.00 3.20
5524 5764 4.527816 ACATTCTGAAGTGAAGCTCTCTCT 59.472 41.667 0.00 0.00 0.00 3.10
5525 5765 4.782019 TTCTGAAGTGAAGCTCTCTCTC 57.218 45.455 0.00 0.00 0.00 3.20
5526 5766 2.746904 TCTGAAGTGAAGCTCTCTCTCG 59.253 50.000 0.00 0.00 0.00 4.04
5527 5767 2.487762 CTGAAGTGAAGCTCTCTCTCGT 59.512 50.000 0.00 0.00 0.00 4.18
5528 5768 2.227626 TGAAGTGAAGCTCTCTCTCGTG 59.772 50.000 0.00 0.00 0.00 4.35
5529 5769 1.904287 AGTGAAGCTCTCTCTCGTGT 58.096 50.000 0.00 0.00 0.00 4.49
5530 5770 1.539388 AGTGAAGCTCTCTCTCGTGTG 59.461 52.381 0.00 0.00 0.00 3.82
5561 5801 6.444171 ACTTGGTAGAGTAGAGGCCTAATTTT 59.556 38.462 4.42 0.00 0.00 1.82
5591 5831 4.478843 TCGATTTCGAGTAACGGGATAG 57.521 45.455 0.00 0.00 44.22 2.08
5592 5832 3.251729 TCGATTTCGAGTAACGGGATAGG 59.748 47.826 0.00 0.00 44.22 2.57
5593 5833 3.251729 CGATTTCGAGTAACGGGATAGGA 59.748 47.826 0.00 0.00 43.02 2.94
5594 5834 4.613167 CGATTTCGAGTAACGGGATAGGAG 60.613 50.000 0.00 0.00 43.02 3.69
5599 5839 3.501445 CGAGTAACGGGATAGGAGTAAGG 59.499 52.174 0.00 0.00 38.46 2.69
5618 5863 9.752961 GAGTAAGGAGTAATTCTTTGATAGGTC 57.247 37.037 0.00 0.00 0.00 3.85
5723 5968 3.386726 TCCAACTGTATATTGTCCTCCGG 59.613 47.826 0.00 0.00 0.00 5.14
5724 5969 3.134081 CCAACTGTATATTGTCCTCCGGT 59.866 47.826 0.00 0.00 0.00 5.28
5725 5970 4.383770 CCAACTGTATATTGTCCTCCGGTT 60.384 45.833 0.00 0.00 0.00 4.44
5726 5971 5.183228 CAACTGTATATTGTCCTCCGGTTT 58.817 41.667 0.00 0.00 0.00 3.27
5727 5972 6.342906 CAACTGTATATTGTCCTCCGGTTTA 58.657 40.000 0.00 0.00 0.00 2.01
5728 5973 6.742559 ACTGTATATTGTCCTCCGGTTTAT 57.257 37.500 0.00 0.00 0.00 1.40
5729 5974 7.844493 ACTGTATATTGTCCTCCGGTTTATA 57.156 36.000 0.00 0.00 0.00 0.98
5730 5975 8.253867 ACTGTATATTGTCCTCCGGTTTATAA 57.746 34.615 0.00 0.00 0.00 0.98
5731 5976 8.707449 ACTGTATATTGTCCTCCGGTTTATAAA 58.293 33.333 0.00 0.00 0.00 1.40
5732 5977 9.550406 CTGTATATTGTCCTCCGGTTTATAAAA 57.450 33.333 0.00 0.00 0.00 1.52
5733 5978 9.902684 TGTATATTGTCCTCCGGTTTATAAAAA 57.097 29.630 0.00 0.00 0.00 1.94
5735 5980 6.769134 ATTGTCCTCCGGTTTATAAAAAGG 57.231 37.500 0.00 11.88 0.00 3.11
5736 5981 5.502089 TGTCCTCCGGTTTATAAAAAGGA 57.498 39.130 17.13 17.13 0.00 3.36
5737 5982 5.247862 TGTCCTCCGGTTTATAAAAAGGAC 58.752 41.667 25.56 25.56 42.40 3.85
5738 5983 5.247862 GTCCTCCGGTTTATAAAAAGGACA 58.752 41.667 26.40 13.82 41.87 4.02
5739 5984 5.353400 GTCCTCCGGTTTATAAAAAGGACAG 59.647 44.000 26.40 17.82 41.87 3.51
5740 5985 5.248934 TCCTCCGGTTTATAAAAAGGACAGA 59.751 40.000 15.19 12.77 0.00 3.41
5741 5986 5.353400 CCTCCGGTTTATAAAAAGGACAGAC 59.647 44.000 15.19 0.00 0.00 3.51
5742 5987 6.117975 TCCGGTTTATAAAAAGGACAGACT 57.882 37.500 15.19 0.00 0.00 3.24
5743 5988 6.168389 TCCGGTTTATAAAAAGGACAGACTC 58.832 40.000 15.19 0.00 0.00 3.36
5744 5989 5.935789 CCGGTTTATAAAAAGGACAGACTCA 59.064 40.000 12.49 0.00 0.00 3.41
5745 5990 6.092259 CCGGTTTATAAAAAGGACAGACTCAG 59.908 42.308 12.49 0.00 0.00 3.35
5746 5991 6.649557 CGGTTTATAAAAAGGACAGACTCAGT 59.350 38.462 0.00 0.00 0.00 3.41
5747 5992 7.360101 CGGTTTATAAAAAGGACAGACTCAGTG 60.360 40.741 0.00 0.00 0.00 3.66
5748 5993 7.298854 GTTTATAAAAAGGACAGACTCAGTGC 58.701 38.462 0.00 0.00 0.00 4.40
5749 5994 3.281727 AAAAAGGACAGACTCAGTGCA 57.718 42.857 0.00 0.00 0.00 4.57
5750 5995 3.498774 AAAAGGACAGACTCAGTGCAT 57.501 42.857 0.00 0.00 0.00 3.96
5751 5996 4.623932 AAAAGGACAGACTCAGTGCATA 57.376 40.909 0.00 0.00 0.00 3.14
5752 5997 3.883830 AAGGACAGACTCAGTGCATAG 57.116 47.619 0.00 0.00 0.00 2.23
5753 5998 3.093057 AGGACAGACTCAGTGCATAGA 57.907 47.619 0.00 0.00 0.00 1.98
5754 5999 3.435275 AGGACAGACTCAGTGCATAGAA 58.565 45.455 0.00 0.00 0.00 2.10
5755 6000 3.446873 AGGACAGACTCAGTGCATAGAAG 59.553 47.826 0.00 0.00 0.00 2.85
5756 6001 3.186119 GACAGACTCAGTGCATAGAAGC 58.814 50.000 0.00 0.00 0.00 3.86
5757 6002 2.830923 ACAGACTCAGTGCATAGAAGCT 59.169 45.455 0.00 0.00 34.99 3.74
5758 6003 3.119173 ACAGACTCAGTGCATAGAAGCTC 60.119 47.826 0.00 0.00 34.99 4.09
5759 6004 2.430332 AGACTCAGTGCATAGAAGCTCC 59.570 50.000 0.00 0.00 34.99 4.70
5760 6005 1.484240 ACTCAGTGCATAGAAGCTCCC 59.516 52.381 0.00 0.00 34.99 4.30
5761 6006 1.483827 CTCAGTGCATAGAAGCTCCCA 59.516 52.381 0.00 0.00 34.99 4.37
5762 6007 1.208052 TCAGTGCATAGAAGCTCCCAC 59.792 52.381 0.00 0.00 34.99 4.61
5763 6008 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
5764 6009 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
5765 6010 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
5766 6011 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
5767 6012 2.012673 GCATAGAAGCTCCCACACAAG 58.987 52.381 0.00 0.00 0.00 3.16
5768 6013 2.636830 CATAGAAGCTCCCACACAAGG 58.363 52.381 0.00 0.00 0.00 3.61
5769 6014 1.729586 TAGAAGCTCCCACACAAGGT 58.270 50.000 0.00 0.00 0.00 3.50
5777 6022 4.481195 CACACAAGGTGGGGTCTG 57.519 61.111 1.07 0.00 44.04 3.51
5778 6023 1.228245 CACACAAGGTGGGGTCTGG 60.228 63.158 1.07 0.00 44.04 3.86
5779 6024 2.436109 CACAAGGTGGGGTCTGGG 59.564 66.667 0.00 0.00 0.00 4.45
5780 6025 2.858974 ACAAGGTGGGGTCTGGGG 60.859 66.667 0.00 0.00 0.00 4.96
5781 6026 2.531685 CAAGGTGGGGTCTGGGGA 60.532 66.667 0.00 0.00 0.00 4.81
5782 6027 2.204151 AAGGTGGGGTCTGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
5783 6028 3.891432 AAGGTGGGGTCTGGGGAGG 62.891 68.421 0.00 0.00 0.00 4.30
5785 6030 4.348495 GTGGGGTCTGGGGAGGGA 62.348 72.222 0.00 0.00 0.00 4.20
5786 6031 3.300962 TGGGGTCTGGGGAGGGAT 61.301 66.667 0.00 0.00 0.00 3.85
5787 6032 2.044620 GGGGTCTGGGGAGGGATT 59.955 66.667 0.00 0.00 0.00 3.01
5788 6033 1.320512 GGGGTCTGGGGAGGGATTA 59.679 63.158 0.00 0.00 0.00 1.75
5789 6034 0.103876 GGGGTCTGGGGAGGGATTAT 60.104 60.000 0.00 0.00 0.00 1.28
5790 6035 1.153565 GGGGTCTGGGGAGGGATTATA 59.846 57.143 0.00 0.00 0.00 0.98
5791 6036 2.552367 GGGTCTGGGGAGGGATTATAG 58.448 57.143 0.00 0.00 0.00 1.31
5792 6037 2.552367 GGTCTGGGGAGGGATTATAGG 58.448 57.143 0.00 0.00 0.00 2.57
5793 6038 2.113777 GGTCTGGGGAGGGATTATAGGA 59.886 54.545 0.00 0.00 0.00 2.94
5794 6039 3.441054 GGTCTGGGGAGGGATTATAGGAA 60.441 52.174 0.00 0.00 0.00 3.36
5795 6040 3.583526 GTCTGGGGAGGGATTATAGGAAC 59.416 52.174 0.00 0.00 0.00 3.62
5796 6041 2.913617 CTGGGGAGGGATTATAGGAACC 59.086 54.545 0.00 0.00 0.00 3.62
5797 6042 2.531463 TGGGGAGGGATTATAGGAACCT 59.469 50.000 0.00 0.00 0.00 3.50
5798 6043 3.741438 TGGGGAGGGATTATAGGAACCTA 59.259 47.826 2.93 2.93 0.00 3.08
5799 6044 4.202901 TGGGGAGGGATTATAGGAACCTAG 60.203 50.000 6.72 0.00 31.45 3.02
5800 6045 4.202912 GGGGAGGGATTATAGGAACCTAGT 60.203 50.000 6.72 0.00 31.45 2.57
5801 6046 5.024785 GGGAGGGATTATAGGAACCTAGTC 58.975 50.000 6.72 4.93 31.45 2.59
5802 6047 5.222589 GGGAGGGATTATAGGAACCTAGTCT 60.223 48.000 6.72 0.00 31.45 3.24
5803 6048 6.324544 GGAGGGATTATAGGAACCTAGTCTT 58.675 44.000 6.72 0.00 31.45 3.01
5804 6049 7.477008 GGAGGGATTATAGGAACCTAGTCTTA 58.523 42.308 6.72 0.00 31.45 2.10
5805 6050 7.396907 GGAGGGATTATAGGAACCTAGTCTTAC 59.603 44.444 6.72 0.00 31.45 2.34
5806 6051 7.247500 AGGGATTATAGGAACCTAGTCTTACC 58.753 42.308 6.72 4.95 31.45 2.85
5807 6052 6.440010 GGGATTATAGGAACCTAGTCTTACCC 59.560 46.154 6.72 9.62 31.45 3.69
5808 6053 6.440010 GGATTATAGGAACCTAGTCTTACCCC 59.560 46.154 6.72 0.00 31.45 4.95
5809 6054 6.618836 TTATAGGAACCTAGTCTTACCCCT 57.381 41.667 6.72 0.00 31.45 4.79
5810 6055 3.117552 AGGAACCTAGTCTTACCCCTG 57.882 52.381 0.00 0.00 0.00 4.45
5811 6056 1.485480 GGAACCTAGTCTTACCCCTGC 59.515 57.143 0.00 0.00 0.00 4.85
5812 6057 2.185387 GAACCTAGTCTTACCCCTGCA 58.815 52.381 0.00 0.00 0.00 4.41
5813 6058 2.337359 ACCTAGTCTTACCCCTGCAA 57.663 50.000 0.00 0.00 0.00 4.08
5814 6059 2.627933 ACCTAGTCTTACCCCTGCAAA 58.372 47.619 0.00 0.00 0.00 3.68
5815 6060 2.572104 ACCTAGTCTTACCCCTGCAAAG 59.428 50.000 0.00 0.00 0.00 2.77
5816 6061 2.572104 CCTAGTCTTACCCCTGCAAAGT 59.428 50.000 0.00 0.00 0.00 2.66
5817 6062 2.568623 AGTCTTACCCCTGCAAAGTG 57.431 50.000 0.00 0.00 0.00 3.16
5818 6063 0.881796 GTCTTACCCCTGCAAAGTGC 59.118 55.000 0.00 0.00 45.29 4.40
5829 6074 1.978542 GCAAAGTGCAATGCAGAGAG 58.021 50.000 8.73 0.33 44.26 3.20
5830 6075 1.402456 GCAAAGTGCAATGCAGAGAGG 60.402 52.381 8.73 0.00 44.26 3.69
5831 6076 0.886563 AAAGTGCAATGCAGAGAGGC 59.113 50.000 8.73 0.00 40.08 4.70
5832 6077 0.037877 AAGTGCAATGCAGAGAGGCT 59.962 50.000 8.73 0.00 40.08 4.58
5834 6079 1.378119 TGCAATGCAGAGAGGCTGG 60.378 57.895 2.72 0.00 45.03 4.85
5835 6080 1.378250 GCAATGCAGAGAGGCTGGT 60.378 57.895 0.00 0.00 45.03 4.00
5836 6081 0.964358 GCAATGCAGAGAGGCTGGTT 60.964 55.000 0.00 0.00 45.03 3.67
5837 6082 1.093159 CAATGCAGAGAGGCTGGTTC 58.907 55.000 0.00 0.00 45.03 3.62
5838 6083 0.392193 AATGCAGAGAGGCTGGTTCG 60.392 55.000 0.00 0.00 45.03 3.95
5839 6084 1.260538 ATGCAGAGAGGCTGGTTCGA 61.261 55.000 0.00 0.00 45.03 3.71
5840 6085 1.293498 GCAGAGAGGCTGGTTCGAA 59.707 57.895 0.00 0.00 45.03 3.71
5841 6086 1.016653 GCAGAGAGGCTGGTTCGAAC 61.017 60.000 20.14 20.14 45.03 3.95
5851 6096 3.762674 GGTTCGAACCCAGGATCTC 57.237 57.895 33.02 7.79 43.43 2.75
5852 6097 1.196012 GGTTCGAACCCAGGATCTCT 58.804 55.000 33.02 0.00 43.43 3.10
5853 6098 1.555533 GGTTCGAACCCAGGATCTCTT 59.444 52.381 33.02 0.00 43.43 2.85
5854 6099 2.622436 GTTCGAACCCAGGATCTCTTG 58.378 52.381 17.68 0.00 0.00 3.02
5855 6100 1.195115 TCGAACCCAGGATCTCTTGG 58.805 55.000 1.48 1.48 42.20 3.61
5856 6101 0.462759 CGAACCCAGGATCTCTTGGC 60.463 60.000 2.91 0.00 41.31 4.52
5857 6102 0.620556 GAACCCAGGATCTCTTGGCA 59.379 55.000 2.91 0.00 41.31 4.92
5858 6103 0.329596 AACCCAGGATCTCTTGGCAC 59.670 55.000 2.91 0.00 41.31 5.01
5859 6104 0.842030 ACCCAGGATCTCTTGGCACA 60.842 55.000 2.91 0.00 41.31 4.57
5870 6115 2.449518 TGGCACAAGTGGGGAGGA 60.450 61.111 2.00 0.00 31.92 3.71
5871 6116 2.034221 GGCACAAGTGGGGAGGAC 59.966 66.667 2.00 0.00 0.00 3.85
5872 6117 2.529744 GGCACAAGTGGGGAGGACT 61.530 63.158 2.00 0.00 0.00 3.85
5873 6118 1.456287 GCACAAGTGGGGAGGACTT 59.544 57.895 2.00 0.00 33.82 3.01
5874 6119 0.606673 GCACAAGTGGGGAGGACTTC 60.607 60.000 2.00 0.00 31.05 3.01
5875 6120 0.764890 CACAAGTGGGGAGGACTTCA 59.235 55.000 0.00 0.00 31.05 3.02
5876 6121 0.765510 ACAAGTGGGGAGGACTTCAC 59.234 55.000 0.00 0.00 31.05 3.18
5882 6127 1.003233 GGGAGGACTTCACCACTGC 60.003 63.158 0.00 0.00 0.00 4.40
5883 6128 1.374758 GGAGGACTTCACCACTGCG 60.375 63.158 0.00 0.00 0.00 5.18
5884 6129 2.029844 GAGGACTTCACCACTGCGC 61.030 63.158 0.00 0.00 0.00 6.09
5885 6130 3.050275 GGACTTCACCACTGCGCC 61.050 66.667 4.18 0.00 0.00 6.53
5886 6131 2.280797 GACTTCACCACTGCGCCA 60.281 61.111 4.18 0.00 0.00 5.69
5887 6132 2.281070 ACTTCACCACTGCGCCAG 60.281 61.111 4.18 4.99 37.52 4.85
5888 6133 3.052082 CTTCACCACTGCGCCAGG 61.052 66.667 4.18 6.64 35.51 4.45
5900 6145 3.411517 GCCAGGCCTGCCCTCTAA 61.412 66.667 28.39 0.00 44.09 2.10
5901 6146 2.983879 GCCAGGCCTGCCCTCTAAA 61.984 63.158 28.39 0.00 44.09 1.85
5902 6147 1.925888 CCAGGCCTGCCCTCTAAAT 59.074 57.895 28.39 0.00 44.09 1.40
5903 6148 1.140312 CCAGGCCTGCCCTCTAAATA 58.860 55.000 28.39 0.00 44.09 1.40
5904 6149 1.707427 CCAGGCCTGCCCTCTAAATAT 59.293 52.381 28.39 0.00 44.09 1.28
5905 6150 2.912956 CCAGGCCTGCCCTCTAAATATA 59.087 50.000 28.39 0.00 44.09 0.86
5906 6151 3.330701 CCAGGCCTGCCCTCTAAATATAA 59.669 47.826 28.39 0.00 44.09 0.98
5907 6152 4.018050 CCAGGCCTGCCCTCTAAATATAAT 60.018 45.833 28.39 0.00 44.09 1.28
5908 6153 5.517299 CCAGGCCTGCCCTCTAAATATAATT 60.517 44.000 28.39 0.00 44.09 1.40
5909 6154 6.012745 CAGGCCTGCCCTCTAAATATAATTT 58.987 40.000 22.33 0.00 44.09 1.82
5910 6155 6.494835 CAGGCCTGCCCTCTAAATATAATTTT 59.505 38.462 22.33 0.00 44.09 1.82
5911 6156 6.721668 AGGCCTGCCCTCTAAATATAATTTTC 59.278 38.462 3.11 0.00 41.21 2.29
5912 6157 6.071334 GGCCTGCCCTCTAAATATAATTTTCC 60.071 42.308 0.00 0.00 0.00 3.13
5913 6158 6.721668 GCCTGCCCTCTAAATATAATTTTCCT 59.278 38.462 0.00 0.00 0.00 3.36
5914 6159 7.094162 GCCTGCCCTCTAAATATAATTTTCCTC 60.094 40.741 0.00 0.00 0.00 3.71
5915 6160 7.394641 CCTGCCCTCTAAATATAATTTTCCTCC 59.605 40.741 0.00 0.00 0.00 4.30
5916 6161 6.940298 TGCCCTCTAAATATAATTTTCCTCCG 59.060 38.462 0.00 0.00 0.00 4.63
5982 6232 9.050601 GGATATTTTGGACTAAAGATCAGTGAG 57.949 37.037 13.04 0.00 37.43 3.51
5999 6249 9.788960 GATCAGTGAGTAAAAACTTTGTTTTCT 57.211 29.630 8.57 3.59 32.95 2.52
6013 6263 2.428890 TGTTTTCTTTTCACCGGCACAT 59.571 40.909 0.00 0.00 0.00 3.21
6027 6277 5.353123 CACCGGCACATAAGTTAGTATTTGT 59.647 40.000 0.00 0.00 0.00 2.83
6107 6357 2.802787 ATAGCAGACGAGCCATGTAC 57.197 50.000 0.00 0.00 34.23 2.90
6114 6364 4.084328 GCAGACGAGCCATGTACATAATTC 60.084 45.833 8.32 5.44 0.00 2.17
6135 6385 6.616237 TTCTTTTAGAATTACTCCCTCCGT 57.384 37.500 0.00 0.00 0.00 4.69
6136 6386 6.616237 TCTTTTAGAATTACTCCCTCCGTT 57.384 37.500 0.00 0.00 0.00 4.44
6137 6387 7.012661 TCTTTTAGAATTACTCCCTCCGTTT 57.987 36.000 0.00 0.00 0.00 3.60
6138 6388 7.101700 TCTTTTAGAATTACTCCCTCCGTTTC 58.898 38.462 0.00 0.00 0.00 2.78
6139 6389 6.363167 TTTAGAATTACTCCCTCCGTTTCA 57.637 37.500 0.00 0.00 0.00 2.69
6140 6390 4.903045 AGAATTACTCCCTCCGTTTCAA 57.097 40.909 0.00 0.00 0.00 2.69
6141 6391 5.237236 AGAATTACTCCCTCCGTTTCAAA 57.763 39.130 0.00 0.00 0.00 2.69
6142 6392 5.627135 AGAATTACTCCCTCCGTTTCAAAA 58.373 37.500 0.00 0.00 0.00 2.44
6143 6393 6.246163 AGAATTACTCCCTCCGTTTCAAAAT 58.754 36.000 0.00 0.00 0.00 1.82
6144 6394 6.719829 AGAATTACTCCCTCCGTTTCAAAATT 59.280 34.615 0.00 0.00 0.00 1.82
6145 6395 5.952526 TTACTCCCTCCGTTTCAAAATTC 57.047 39.130 0.00 0.00 0.00 2.17
6146 6396 4.100279 ACTCCCTCCGTTTCAAAATTCT 57.900 40.909 0.00 0.00 0.00 2.40
6147 6397 4.470602 ACTCCCTCCGTTTCAAAATTCTT 58.529 39.130 0.00 0.00 0.00 2.52
6148 6398 4.278419 ACTCCCTCCGTTTCAAAATTCTTG 59.722 41.667 0.00 0.00 0.00 3.02
6149 6399 4.211920 TCCCTCCGTTTCAAAATTCTTGT 58.788 39.130 0.00 0.00 0.00 3.16
6150 6400 4.277423 TCCCTCCGTTTCAAAATTCTTGTC 59.723 41.667 0.00 0.00 0.00 3.18
6151 6401 4.278419 CCCTCCGTTTCAAAATTCTTGTCT 59.722 41.667 0.00 0.00 0.00 3.41
6152 6402 5.221244 CCCTCCGTTTCAAAATTCTTGTCTT 60.221 40.000 0.00 0.00 0.00 3.01
6153 6403 6.016610 CCCTCCGTTTCAAAATTCTTGTCTTA 60.017 38.462 0.00 0.00 0.00 2.10
6154 6404 7.078228 CCTCCGTTTCAAAATTCTTGTCTTAG 58.922 38.462 0.00 0.00 0.00 2.18
6155 6405 7.041372 CCTCCGTTTCAAAATTCTTGTCTTAGA 60.041 37.037 0.00 0.00 0.00 2.10
6156 6406 8.391075 TCCGTTTCAAAATTCTTGTCTTAGAT 57.609 30.769 0.00 0.00 0.00 1.98
6157 6407 8.846211 TCCGTTTCAAAATTCTTGTCTTAGATT 58.154 29.630 0.00 0.00 0.00 2.40
6158 6408 9.463443 CCGTTTCAAAATTCTTGTCTTAGATTT 57.537 29.630 0.00 0.00 0.00 2.17
6170 6420 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
6171 6421 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
6172 6422 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
6173 6423 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
6174 6424 7.539366 GTCTTAGATTTGTCTAGATACGGATGC 59.461 40.741 0.00 0.00 0.00 3.91
6175 6425 5.791336 AGATTTGTCTAGATACGGATGCA 57.209 39.130 0.00 0.00 0.00 3.96
6176 6426 6.352016 AGATTTGTCTAGATACGGATGCAT 57.648 37.500 0.00 0.00 0.00 3.96
6177 6427 6.393990 AGATTTGTCTAGATACGGATGCATC 58.606 40.000 18.81 18.81 0.00 3.91
6178 6428 5.791336 TTTGTCTAGATACGGATGCATCT 57.209 39.130 25.28 10.06 35.67 2.90
6179 6429 6.894339 TTTGTCTAGATACGGATGCATCTA 57.106 37.500 25.28 12.00 33.58 1.98
6180 6430 6.894339 TTGTCTAGATACGGATGCATCTAA 57.106 37.500 25.28 11.93 34.25 2.10
6181 6431 7.468141 TTGTCTAGATACGGATGCATCTAAT 57.532 36.000 25.28 15.84 34.25 1.73
6182 6432 8.575649 TTGTCTAGATACGGATGCATCTAATA 57.424 34.615 25.28 15.24 34.25 0.98
6183 6433 7.986562 TGTCTAGATACGGATGCATCTAATAC 58.013 38.462 25.28 14.23 34.25 1.89
6184 6434 7.829706 TGTCTAGATACGGATGCATCTAATACT 59.170 37.037 25.28 19.49 34.25 2.12
6185 6435 9.327628 GTCTAGATACGGATGCATCTAATACTA 57.672 37.037 25.28 19.55 34.25 1.82
6192 6442 8.932945 ACGGATGCATCTAATACTATAATGTG 57.067 34.615 25.28 0.00 0.00 3.21
6193 6443 8.749354 ACGGATGCATCTAATACTATAATGTGA 58.251 33.333 25.28 0.00 0.00 3.58
6194 6444 9.025020 CGGATGCATCTAATACTATAATGTGAC 57.975 37.037 25.28 2.13 0.00 3.67
6207 6457 7.952671 ACTATAATGTGACTTGATACATCCGT 58.047 34.615 0.00 0.00 36.56 4.69
6208 6458 9.074576 ACTATAATGTGACTTGATACATCCGTA 57.925 33.333 0.00 0.00 36.56 4.02
6209 6459 9.561270 CTATAATGTGACTTGATACATCCGTAG 57.439 37.037 0.00 0.00 36.56 3.51
6210 6460 6.465439 AATGTGACTTGATACATCCGTAGA 57.535 37.500 0.00 0.00 36.56 2.59
6211 6461 5.244785 TGTGACTTGATACATCCGTAGAC 57.755 43.478 0.00 0.00 0.00 2.59
6212 6462 4.703093 TGTGACTTGATACATCCGTAGACA 59.297 41.667 0.00 0.00 0.00 3.41
6213 6463 5.184287 TGTGACTTGATACATCCGTAGACAA 59.816 40.000 0.00 0.00 0.00 3.18
6214 6464 5.744345 GTGACTTGATACATCCGTAGACAAG 59.256 44.000 14.76 14.76 43.62 3.16
6215 6465 5.650703 TGACTTGATACATCCGTAGACAAGA 59.349 40.000 19.43 5.34 42.31 3.02
6216 6466 6.152154 TGACTTGATACATCCGTAGACAAGAA 59.848 38.462 19.43 10.59 42.31 2.52
6217 6467 7.113658 ACTTGATACATCCGTAGACAAGAAT 57.886 36.000 19.43 5.34 42.31 2.40
6218 6468 7.556844 ACTTGATACATCCGTAGACAAGAATT 58.443 34.615 19.43 0.00 42.31 2.17
6219 6469 8.041323 ACTTGATACATCCGTAGACAAGAATTT 58.959 33.333 19.43 4.66 42.31 1.82
6220 6470 8.786826 TTGATACATCCGTAGACAAGAATTTT 57.213 30.769 0.00 0.00 0.00 1.82
6221 6471 8.196802 TGATACATCCGTAGACAAGAATTTTG 57.803 34.615 0.00 0.00 0.00 2.44
6222 6472 5.880054 ACATCCGTAGACAAGAATTTTGG 57.120 39.130 5.68 0.00 0.00 3.28
6223 6473 4.700213 ACATCCGTAGACAAGAATTTTGGG 59.300 41.667 5.68 0.00 0.00 4.12
6224 6474 4.627284 TCCGTAGACAAGAATTTTGGGA 57.373 40.909 5.68 0.00 0.00 4.37
6225 6475 4.320870 TCCGTAGACAAGAATTTTGGGAC 58.679 43.478 5.68 0.00 0.00 4.46
6226 6476 3.124636 CCGTAGACAAGAATTTTGGGACG 59.875 47.826 5.68 9.32 0.00 4.79
6227 6477 3.124636 CGTAGACAAGAATTTTGGGACGG 59.875 47.826 0.00 0.00 0.00 4.79
6228 6478 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
6229 6479 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
6230 6480 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
6231 6481 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
6232 6482 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
6233 6483 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
6234 6484 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
6235 6485 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
6279 6529 8.807667 ATTTAGAAAGAAAACAAGCTCACATG 57.192 30.769 0.00 0.00 0.00 3.21
6280 6530 5.841957 AGAAAGAAAACAAGCTCACATGT 57.158 34.783 0.00 0.00 0.00 3.21
6281 6531 6.942532 AGAAAGAAAACAAGCTCACATGTA 57.057 33.333 0.00 0.00 0.00 2.29
6282 6532 6.963796 AGAAAGAAAACAAGCTCACATGTAG 58.036 36.000 0.00 0.00 0.00 2.74
6283 6533 5.695851 AAGAAAACAAGCTCACATGTAGG 57.304 39.130 0.00 0.00 0.00 3.18
6284 6534 4.973168 AGAAAACAAGCTCACATGTAGGA 58.027 39.130 0.00 0.00 0.00 2.94
6312 6562 4.464597 TCATTTATGGCCTGTTTGGTTACC 59.535 41.667 3.32 0.00 38.35 2.85
6340 6590 3.172106 TCAACCAGGCCCGTTGGA 61.172 61.111 25.42 14.02 40.80 3.53
6362 6612 2.031870 GTGACTTTTGGAGGCTTTGGT 58.968 47.619 0.00 0.00 33.09 3.67
6363 6613 3.219281 GTGACTTTTGGAGGCTTTGGTA 58.781 45.455 0.00 0.00 33.09 3.25
6487 6737 3.438017 AAGCCCGAGCGATGAGAGC 62.438 63.158 0.00 0.00 46.67 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.115052 ACATTGCTTCCCGTGGCA 59.885 55.556 0.00 0.00 36.62 4.92
39 40 2.700773 GGCCGACACATTGCTTCCC 61.701 63.158 0.00 0.00 0.00 3.97
110 111 2.281345 GATCCAGATGCGCAGGGG 60.281 66.667 18.32 17.08 0.00 4.79
114 115 2.811514 GGGGAGATCCAGATGCGCA 61.812 63.158 14.96 14.96 37.91 6.09
145 149 1.136147 CAACGTCGACGACTAGGGG 59.864 63.158 41.52 18.57 43.02 4.79
149 153 0.179181 GCCATCAACGTCGACGACTA 60.179 55.000 41.52 25.43 43.02 2.59
177 181 1.406205 CGCCTTTCTTCCTCCTCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
186 190 2.994671 GCCTTGCCGCCTTTCTTCC 61.995 63.158 0.00 0.00 0.00 3.46
294 302 4.030452 GTTGGGCACGTCTGCTGC 62.030 66.667 0.00 0.00 43.66 5.25
295 303 2.281070 AGTTGGGCACGTCTGCTG 60.281 61.111 0.00 0.00 43.66 4.41
296 304 2.281070 CAGTTGGGCACGTCTGCT 60.281 61.111 0.00 0.00 43.66 4.24
297 305 4.030452 GCAGTTGGGCACGTCTGC 62.030 66.667 16.99 16.99 44.50 4.26
298 306 3.716006 CGCAGTTGGGCACGTCTG 61.716 66.667 5.93 5.93 0.00 3.51
311 319 0.991770 CGTTTCGTTTCCTTGCGCAG 60.992 55.000 11.31 4.92 0.00 5.18
312 320 1.010574 CGTTTCGTTTCCTTGCGCA 60.011 52.632 5.66 5.66 0.00 6.09
314 322 0.716926 CGTCGTTTCGTTTCCTTGCG 60.717 55.000 0.00 0.00 0.00 4.85
328 336 1.941999 GACGGAAAGGGGATCGTCGT 61.942 60.000 0.00 0.00 41.60 4.34
403 428 2.254350 GCTGTTTCGGCCGTTTCC 59.746 61.111 27.15 12.21 0.00 3.13
542 579 3.839432 GAGAACTCGAGGGGGCCG 61.839 72.222 18.41 0.00 0.00 6.13
547 589 2.154798 TTGCGTGGAGAACTCGAGGG 62.155 60.000 18.41 0.00 0.00 4.30
703 754 3.378339 CGTATAAAAGTACCGCTGGGAG 58.622 50.000 0.00 0.00 36.97 4.30
763 814 1.673665 GCTTGAGCTGGGTGAGTGG 60.674 63.158 0.00 0.00 38.21 4.00
765 816 1.422161 AAGGCTTGAGCTGGGTGAGT 61.422 55.000 0.00 0.00 41.70 3.41
782 833 2.303549 CTACTGGGCTGGGAGCGAAG 62.304 65.000 0.00 0.00 43.62 3.79
783 834 2.284331 TACTGGGCTGGGAGCGAA 60.284 61.111 0.00 0.00 43.62 4.70
786 837 1.990060 TGTCTACTGGGCTGGGAGC 60.990 63.158 0.00 0.00 41.46 4.70
787 838 0.904865 TGTGTCTACTGGGCTGGGAG 60.905 60.000 0.00 0.00 0.00 4.30
788 839 1.157513 TGTGTCTACTGGGCTGGGA 59.842 57.895 0.00 0.00 0.00 4.37
789 840 1.296715 GTGTGTCTACTGGGCTGGG 59.703 63.158 0.00 0.00 0.00 4.45
790 841 0.320771 GTGTGTGTCTACTGGGCTGG 60.321 60.000 0.00 0.00 0.00 4.85
791 842 0.392706 TGTGTGTGTCTACTGGGCTG 59.607 55.000 0.00 0.00 0.00 4.85
792 843 0.393077 GTGTGTGTGTCTACTGGGCT 59.607 55.000 0.00 0.00 0.00 5.19
803 854 6.659361 AGTAGTAGTATCTACGTGTGTGTG 57.341 41.667 0.00 0.00 43.31 3.82
852 903 3.088194 TGCTAACGTAATCGGATCACC 57.912 47.619 0.00 0.00 41.85 4.02
856 907 4.022242 AGTGCTATGCTAACGTAATCGGAT 60.022 41.667 0.00 0.00 41.85 4.18
858 909 3.639538 AGTGCTATGCTAACGTAATCGG 58.360 45.455 0.00 0.00 41.85 4.18
894 946 3.906218 AGATCCCGGATGAGATGAAATGA 59.094 43.478 4.08 0.00 0.00 2.57
957 1009 1.499870 TCTTTTTCCTTTCCCGGGGAA 59.500 47.619 24.64 24.64 40.27 3.97
964 1016 3.800261 GCAGCAACCTCTTTTTCCTTTCC 60.800 47.826 0.00 0.00 0.00 3.13
997 1049 3.446570 GCAGCACACCTCCATGGC 61.447 66.667 6.96 0.00 40.22 4.40
1344 1423 4.570663 CGCTCGACGGTGATCCCC 62.571 72.222 0.00 0.00 38.44 4.81
1597 1679 2.728007 GAAAGGGGAATTCCTGGACAG 58.272 52.381 23.63 0.00 37.20 3.51
1725 1816 3.257393 CTCACAAGGGAAGATGAACTCG 58.743 50.000 0.00 0.00 0.00 4.18
1761 1852 9.747898 ACAGTTATGGGTCATAATTTGAAGTAA 57.252 29.630 15.42 0.00 38.37 2.24
1841 1937 9.193133 ACAAATGAGTATAATCGATTACTTCCG 57.807 33.333 19.73 7.42 0.00 4.30
1881 1977 4.756642 GTCTGATGGATGATGGCGAAAATA 59.243 41.667 0.00 0.00 0.00 1.40
2118 2228 2.567615 ACGCTTGAATAGGTGACTCCTT 59.432 45.455 0.49 0.00 45.67 3.36
2365 2502 0.178992 CACCTGCCTCACCCAAAAGA 60.179 55.000 0.00 0.00 0.00 2.52
2380 2517 4.692228 CAATTGCAGTTTTACCAACACCT 58.308 39.130 0.00 0.00 0.00 4.00
2398 2535 2.365410 GGCCAACCCTTCAGCAATT 58.635 52.632 0.00 0.00 0.00 2.32
2485 2622 9.023962 AGAATTTCATAAATGCAGAAACCTGTA 57.976 29.630 0.66 0.00 34.47 2.74
2531 2668 4.414852 CTGCATGATTTAAGTTGGGAACG 58.585 43.478 0.00 0.00 36.23 3.95
2532 2669 4.747810 CCTGCATGATTTAAGTTGGGAAC 58.252 43.478 0.00 0.00 0.00 3.62
2571 2708 2.332063 TAAGCAGGCCAATGTCTAGC 57.668 50.000 5.01 0.00 0.00 3.42
2646 2783 1.006102 ACCTGCTTCACGGACTTCG 60.006 57.895 0.00 0.00 45.88 3.79
2672 2809 8.122330 TGATAACATTTCAGATTGCATTACGAC 58.878 33.333 0.00 0.00 0.00 4.34
2747 2884 2.648059 AGAATAACATCACCTGCAGCC 58.352 47.619 8.66 0.00 0.00 4.85
2777 2914 3.138304 TCCAACAAGATTGTGAACCTCG 58.862 45.455 0.00 0.00 41.31 4.63
2813 2950 1.378646 GCCAGCACCCTTACCCTTC 60.379 63.158 0.00 0.00 0.00 3.46
2849 2986 2.677875 GCAAGTGGGGGCTTCAGG 60.678 66.667 0.00 0.00 0.00 3.86
2889 3026 4.640771 ACCACTAAGAAGCAGGATGAAA 57.359 40.909 0.00 0.00 39.69 2.69
3109 3266 7.011669 GCTGCAATGCACTGGAAATAAATATTT 59.988 33.333 2.72 5.89 35.12 1.40
3304 3479 6.422776 AGACCAAGTAATATTTTCACAGCG 57.577 37.500 0.00 0.00 0.00 5.18
3786 3985 2.367567 AGATTACTGTGTGACGGGTTGT 59.632 45.455 0.00 0.00 0.00 3.32
4480 4688 3.258622 GGTTAAGTACCTGTGAGTCTGCT 59.741 47.826 0.00 0.00 44.10 4.24
4510 4718 6.079763 CAGCGGTTGCACATATATTATCAAC 58.920 40.000 10.18 10.18 46.23 3.18
4550 4758 8.786826 AAGAATACATCGTTTCCACTTTATGA 57.213 30.769 0.00 0.00 0.00 2.15
4565 4773 9.178758 ACCATTCAACCTCTAAAAGAATACATC 57.821 33.333 0.00 0.00 0.00 3.06
4589 4801 1.623811 TCTGCAGGGACAAGTTCTACC 59.376 52.381 15.13 0.00 0.00 3.18
4593 4828 5.644644 CATAAAATCTGCAGGGACAAGTTC 58.355 41.667 15.13 0.00 0.00 3.01
4702 4937 8.465273 ACTGAAGTAAGTTCCTAAAATTGCTT 57.535 30.769 2.24 2.24 44.38 3.91
4703 4938 9.569122 TTACTGAAGTAAGTTCCTAAAATTGCT 57.431 29.630 0.00 0.00 37.06 3.91
4759 4999 3.242739 GCATACGGACTTTTGTGCTATGG 60.243 47.826 0.00 0.00 38.72 2.74
4769 5009 4.948621 AGTCTACTACTGCATACGGACTTT 59.051 41.667 0.00 0.00 36.93 2.66
4772 5012 4.096081 ACAAGTCTACTACTGCATACGGAC 59.904 45.833 0.00 0.00 38.88 4.79
4776 5016 6.310711 GGAACAACAAGTCTACTACTGCATAC 59.689 42.308 0.00 0.00 38.88 2.39
4777 5017 6.014925 TGGAACAACAAGTCTACTACTGCATA 60.015 38.462 0.00 0.00 34.35 3.14
4816 5056 3.582647 TCAAAGAGACCCATGAACTAGCA 59.417 43.478 0.00 0.00 0.00 3.49
4936 5176 2.126071 ATGCTCCGTCGTCCGTTG 60.126 61.111 0.00 0.00 33.66 4.10
4996 5236 2.187958 TCCATCACGAGGGATTTCACT 58.812 47.619 0.00 0.00 36.20 3.41
5047 5287 3.428180 CCGTCTCATCGATTCTGTTGAGT 60.428 47.826 10.39 0.00 37.12 3.41
5074 5314 1.550976 GTCTGTTCCAGAGGACGGAAT 59.449 52.381 0.00 0.00 44.18 3.01
5114 5354 1.970640 ACCAATTCAGAACAAAGGGGC 59.029 47.619 0.00 0.00 0.00 5.80
5132 5372 3.074412 CAAGTTCACCATGTCAGGTACC 58.926 50.000 2.73 2.73 40.77 3.34
5153 5393 4.256920 AGCATTAGTGTCTGATGTGGTTC 58.743 43.478 4.08 0.00 31.37 3.62
5183 5423 2.079158 TGCTAGCATCTGCAAGTGTTC 58.921 47.619 14.93 0.00 45.16 3.18
5332 5572 0.980231 GGGTGATGGCTCTCCTCAGT 60.980 60.000 5.47 0.00 35.71 3.41
5353 5593 2.924757 TGATGACATCCTCCATCAGC 57.075 50.000 12.90 0.00 42.76 4.26
5377 5617 1.348594 CTCGCCGAAAAGAATCGCC 59.651 57.895 0.00 0.00 41.40 5.54
5522 5762 1.254026 CCAAGTCTACCCACACGAGA 58.746 55.000 0.00 0.00 0.00 4.04
5523 5763 0.966920 ACCAAGTCTACCCACACGAG 59.033 55.000 0.00 0.00 0.00 4.18
5524 5764 2.165167 CTACCAAGTCTACCCACACGA 58.835 52.381 0.00 0.00 0.00 4.35
5525 5765 2.163815 CTCTACCAAGTCTACCCACACG 59.836 54.545 0.00 0.00 0.00 4.49
5526 5766 3.163467 ACTCTACCAAGTCTACCCACAC 58.837 50.000 0.00 0.00 0.00 3.82
5527 5767 3.537795 ACTCTACCAAGTCTACCCACA 57.462 47.619 0.00 0.00 0.00 4.17
5528 5768 4.853007 TCTACTCTACCAAGTCTACCCAC 58.147 47.826 0.00 0.00 0.00 4.61
5529 5769 4.079901 CCTCTACTCTACCAAGTCTACCCA 60.080 50.000 0.00 0.00 0.00 4.51
5530 5770 4.463070 CCTCTACTCTACCAAGTCTACCC 58.537 52.174 0.00 0.00 0.00 3.69
5586 5826 8.925338 TCAAAGAATTACTCCTTACTCCTATCC 58.075 37.037 0.00 0.00 0.00 2.59
5590 5830 8.929487 CCTATCAAAGAATTACTCCTTACTCCT 58.071 37.037 0.00 0.00 0.00 3.69
5591 5831 8.706521 ACCTATCAAAGAATTACTCCTTACTCC 58.293 37.037 0.00 0.00 0.00 3.85
5592 5832 9.752961 GACCTATCAAAGAATTACTCCTTACTC 57.247 37.037 0.00 0.00 0.00 2.59
5593 5833 8.414778 CGACCTATCAAAGAATTACTCCTTACT 58.585 37.037 0.00 0.00 0.00 2.24
5594 5834 8.411683 TCGACCTATCAAAGAATTACTCCTTAC 58.588 37.037 0.00 0.00 0.00 2.34
5599 5839 8.745464 GGTATCGACCTATCAAAGAATTACTC 57.255 38.462 0.00 0.00 43.16 2.59
5723 5968 7.041372 TGCACTGAGTCTGTCCTTTTTATAAAC 60.041 37.037 0.00 0.00 0.00 2.01
5724 5969 6.995686 TGCACTGAGTCTGTCCTTTTTATAAA 59.004 34.615 0.00 0.00 0.00 1.40
5725 5970 6.530120 TGCACTGAGTCTGTCCTTTTTATAA 58.470 36.000 0.00 0.00 0.00 0.98
5726 5971 6.109156 TGCACTGAGTCTGTCCTTTTTATA 57.891 37.500 0.00 0.00 0.00 0.98
5727 5972 4.973168 TGCACTGAGTCTGTCCTTTTTAT 58.027 39.130 0.00 0.00 0.00 1.40
5728 5973 4.415881 TGCACTGAGTCTGTCCTTTTTA 57.584 40.909 0.00 0.00 0.00 1.52
5729 5974 3.281727 TGCACTGAGTCTGTCCTTTTT 57.718 42.857 0.00 0.00 0.00 1.94
5730 5975 3.498774 ATGCACTGAGTCTGTCCTTTT 57.501 42.857 0.00 0.00 0.00 2.27
5731 5976 3.834813 TCTATGCACTGAGTCTGTCCTTT 59.165 43.478 0.00 0.00 0.00 3.11
5732 5977 3.435275 TCTATGCACTGAGTCTGTCCTT 58.565 45.455 0.00 0.00 0.00 3.36
5733 5978 3.093057 TCTATGCACTGAGTCTGTCCT 57.907 47.619 0.00 0.00 0.00 3.85
5734 5979 3.779759 CTTCTATGCACTGAGTCTGTCC 58.220 50.000 0.00 0.00 0.00 4.02
5735 5980 3.119173 AGCTTCTATGCACTGAGTCTGTC 60.119 47.826 0.00 0.00 34.99 3.51
5736 5981 2.830923 AGCTTCTATGCACTGAGTCTGT 59.169 45.455 0.00 0.00 34.99 3.41
5737 5982 3.446799 GAGCTTCTATGCACTGAGTCTG 58.553 50.000 0.00 0.00 34.99 3.51
5738 5983 2.430332 GGAGCTTCTATGCACTGAGTCT 59.570 50.000 0.00 0.00 34.99 3.24
5739 5984 2.482839 GGGAGCTTCTATGCACTGAGTC 60.483 54.545 0.00 0.00 34.99 3.36
5740 5985 1.484240 GGGAGCTTCTATGCACTGAGT 59.516 52.381 0.00 0.00 34.99 3.41
5741 5986 1.483827 TGGGAGCTTCTATGCACTGAG 59.516 52.381 0.00 0.00 34.99 3.35
5742 5987 1.208052 GTGGGAGCTTCTATGCACTGA 59.792 52.381 0.00 0.00 34.99 3.41
5743 5988 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
5744 5989 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
5745 5990 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
5746 5991 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
5747 5992 2.012673 CTTGTGTGGGAGCTTCTATGC 58.987 52.381 0.00 0.00 0.00 3.14
5748 5993 2.026822 ACCTTGTGTGGGAGCTTCTATG 60.027 50.000 0.00 0.00 0.00 2.23
5749 5994 2.026822 CACCTTGTGTGGGAGCTTCTAT 60.027 50.000 0.00 0.00 41.52 1.98
5750 5995 1.347707 CACCTTGTGTGGGAGCTTCTA 59.652 52.381 0.00 0.00 41.52 2.10
5751 5996 0.109342 CACCTTGTGTGGGAGCTTCT 59.891 55.000 0.00 0.00 41.52 2.85
5752 5997 2.633860 CACCTTGTGTGGGAGCTTC 58.366 57.895 0.00 0.00 41.52 3.86
5753 5998 4.907457 CACCTTGTGTGGGAGCTT 57.093 55.556 0.00 0.00 41.52 3.74
5760 6005 1.228245 CCAGACCCCACCTTGTGTG 60.228 63.158 0.00 0.00 45.01 3.82
5761 6006 2.460853 CCCAGACCCCACCTTGTGT 61.461 63.158 0.00 0.00 0.00 3.72
5762 6007 2.436109 CCCAGACCCCACCTTGTG 59.564 66.667 0.00 0.00 0.00 3.33
5763 6008 2.858974 CCCCAGACCCCACCTTGT 60.859 66.667 0.00 0.00 0.00 3.16
5764 6009 2.531685 TCCCCAGACCCCACCTTG 60.532 66.667 0.00 0.00 0.00 3.61
5765 6010 2.204151 CTCCCCAGACCCCACCTT 60.204 66.667 0.00 0.00 0.00 3.50
5766 6011 4.354943 CCTCCCCAGACCCCACCT 62.355 72.222 0.00 0.00 0.00 4.00
5768 6013 3.660092 ATCCCTCCCCAGACCCCAC 62.660 68.421 0.00 0.00 0.00 4.61
5769 6014 1.542093 TAATCCCTCCCCAGACCCCA 61.542 60.000 0.00 0.00 0.00 4.96
5770 6015 0.103876 ATAATCCCTCCCCAGACCCC 60.104 60.000 0.00 0.00 0.00 4.95
5771 6016 2.552367 CTATAATCCCTCCCCAGACCC 58.448 57.143 0.00 0.00 0.00 4.46
5772 6017 2.113777 TCCTATAATCCCTCCCCAGACC 59.886 54.545 0.00 0.00 0.00 3.85
5773 6018 3.562108 TCCTATAATCCCTCCCCAGAC 57.438 52.381 0.00 0.00 0.00 3.51
5774 6019 3.441054 GGTTCCTATAATCCCTCCCCAGA 60.441 52.174 0.00 0.00 0.00 3.86
5775 6020 2.913617 GGTTCCTATAATCCCTCCCCAG 59.086 54.545 0.00 0.00 0.00 4.45
5776 6021 2.531463 AGGTTCCTATAATCCCTCCCCA 59.469 50.000 0.00 0.00 0.00 4.96
5777 6022 3.293215 AGGTTCCTATAATCCCTCCCC 57.707 52.381 0.00 0.00 0.00 4.81
5778 6023 5.024785 GACTAGGTTCCTATAATCCCTCCC 58.975 50.000 0.00 0.00 0.00 4.30
5779 6024 5.906254 AGACTAGGTTCCTATAATCCCTCC 58.094 45.833 0.00 0.00 0.00 4.30
5780 6025 7.396907 GGTAAGACTAGGTTCCTATAATCCCTC 59.603 44.444 0.00 0.00 0.00 4.30
5781 6026 7.247500 GGTAAGACTAGGTTCCTATAATCCCT 58.753 42.308 0.00 0.00 0.00 4.20
5782 6027 6.440010 GGGTAAGACTAGGTTCCTATAATCCC 59.560 46.154 0.00 4.36 0.00 3.85
5783 6028 6.440010 GGGGTAAGACTAGGTTCCTATAATCC 59.560 46.154 0.00 0.00 0.00 3.01
5784 6029 7.178805 CAGGGGTAAGACTAGGTTCCTATAATC 59.821 44.444 0.00 0.00 0.00 1.75
5785 6030 7.017531 CAGGGGTAAGACTAGGTTCCTATAAT 58.982 42.308 0.00 0.00 0.00 1.28
5786 6031 6.379579 CAGGGGTAAGACTAGGTTCCTATAA 58.620 44.000 0.00 0.00 0.00 0.98
5787 6032 5.694949 GCAGGGGTAAGACTAGGTTCCTATA 60.695 48.000 0.00 0.00 0.00 1.31
5788 6033 4.817286 CAGGGGTAAGACTAGGTTCCTAT 58.183 47.826 0.00 0.00 0.00 2.57
5789 6034 3.629282 GCAGGGGTAAGACTAGGTTCCTA 60.629 52.174 0.00 0.00 0.00 2.94
5790 6035 2.893153 GCAGGGGTAAGACTAGGTTCCT 60.893 54.545 0.00 0.00 0.00 3.36
5791 6036 1.485480 GCAGGGGTAAGACTAGGTTCC 59.515 57.143 0.00 0.00 0.00 3.62
5792 6037 2.185387 TGCAGGGGTAAGACTAGGTTC 58.815 52.381 0.00 0.00 0.00 3.62
5793 6038 2.337359 TGCAGGGGTAAGACTAGGTT 57.663 50.000 0.00 0.00 0.00 3.50
5794 6039 2.337359 TTGCAGGGGTAAGACTAGGT 57.663 50.000 0.00 0.00 0.00 3.08
5795 6040 2.572104 ACTTTGCAGGGGTAAGACTAGG 59.428 50.000 2.16 0.00 0.00 3.02
5796 6041 3.600388 CACTTTGCAGGGGTAAGACTAG 58.400 50.000 2.16 0.00 0.00 2.57
5797 6042 2.290071 GCACTTTGCAGGGGTAAGACTA 60.290 50.000 2.16 0.00 44.26 2.59
5798 6043 1.545651 GCACTTTGCAGGGGTAAGACT 60.546 52.381 2.16 0.00 44.26 3.24
5799 6044 0.881796 GCACTTTGCAGGGGTAAGAC 59.118 55.000 2.16 0.00 44.26 3.01
5800 6045 3.339547 GCACTTTGCAGGGGTAAGA 57.660 52.632 2.16 0.00 44.26 2.10
5810 6055 1.402456 CCTCTCTGCATTGCACTTTGC 60.402 52.381 7.38 8.20 45.29 3.68
5811 6056 1.402456 GCCTCTCTGCATTGCACTTTG 60.402 52.381 7.38 0.00 33.79 2.77
5812 6057 0.886563 GCCTCTCTGCATTGCACTTT 59.113 50.000 7.38 0.00 33.79 2.66
5813 6058 0.037877 AGCCTCTCTGCATTGCACTT 59.962 50.000 7.38 0.00 33.79 3.16
5814 6059 0.677098 CAGCCTCTCTGCATTGCACT 60.677 55.000 7.38 0.00 35.78 4.40
5815 6060 1.654954 CCAGCCTCTCTGCATTGCAC 61.655 60.000 7.38 0.00 41.50 4.57
5816 6061 1.378119 CCAGCCTCTCTGCATTGCA 60.378 57.895 11.50 11.50 41.50 4.08
5817 6062 0.964358 AACCAGCCTCTCTGCATTGC 60.964 55.000 0.46 0.46 41.50 3.56
5818 6063 1.093159 GAACCAGCCTCTCTGCATTG 58.907 55.000 0.00 0.00 41.50 2.82
5819 6064 0.392193 CGAACCAGCCTCTCTGCATT 60.392 55.000 0.00 0.00 41.50 3.56
5820 6065 1.220206 CGAACCAGCCTCTCTGCAT 59.780 57.895 0.00 0.00 41.50 3.96
5821 6066 1.471829 TTCGAACCAGCCTCTCTGCA 61.472 55.000 0.00 0.00 41.50 4.41
5822 6067 1.016653 GTTCGAACCAGCCTCTCTGC 61.017 60.000 17.68 0.00 41.50 4.26
5823 6068 3.129792 GTTCGAACCAGCCTCTCTG 57.870 57.895 17.68 0.00 42.49 3.35
5834 6079 2.622436 CAAGAGATCCTGGGTTCGAAC 58.378 52.381 20.14 20.14 0.00 3.95
5835 6080 1.555075 CCAAGAGATCCTGGGTTCGAA 59.445 52.381 0.00 0.00 30.82 3.71
5836 6081 1.195115 CCAAGAGATCCTGGGTTCGA 58.805 55.000 0.00 0.00 30.82 3.71
5837 6082 0.462759 GCCAAGAGATCCTGGGTTCG 60.463 60.000 7.90 0.00 38.32 3.95
5838 6083 0.620556 TGCCAAGAGATCCTGGGTTC 59.379 55.000 7.90 0.00 38.32 3.62
5839 6084 0.329596 GTGCCAAGAGATCCTGGGTT 59.670 55.000 7.90 0.00 38.32 4.11
5840 6085 0.842030 TGTGCCAAGAGATCCTGGGT 60.842 55.000 7.90 0.00 38.32 4.51
5841 6086 0.329261 TTGTGCCAAGAGATCCTGGG 59.671 55.000 7.90 4.66 39.14 4.45
5842 6087 1.004044 ACTTGTGCCAAGAGATCCTGG 59.996 52.381 18.22 2.39 0.00 4.45
5843 6088 2.082231 CACTTGTGCCAAGAGATCCTG 58.918 52.381 18.22 4.87 0.00 3.86
5844 6089 1.004044 CCACTTGTGCCAAGAGATCCT 59.996 52.381 18.22 0.00 0.00 3.24
5845 6090 1.457346 CCACTTGTGCCAAGAGATCC 58.543 55.000 18.22 0.00 0.00 3.36
5846 6091 1.457346 CCCACTTGTGCCAAGAGATC 58.543 55.000 18.22 0.00 0.00 2.75
5847 6092 0.038744 CCCCACTTGTGCCAAGAGAT 59.961 55.000 18.22 0.00 0.00 2.75
5848 6093 1.059584 TCCCCACTTGTGCCAAGAGA 61.060 55.000 18.22 8.74 0.00 3.10
5849 6094 0.607489 CTCCCCACTTGTGCCAAGAG 60.607 60.000 18.22 11.85 0.00 2.85
5850 6095 1.455849 CTCCCCACTTGTGCCAAGA 59.544 57.895 18.22 0.00 0.00 3.02
5851 6096 1.604593 CCTCCCCACTTGTGCCAAG 60.605 63.158 11.87 11.87 0.00 3.61
5852 6097 2.081787 TCCTCCCCACTTGTGCCAA 61.082 57.895 0.00 0.00 0.00 4.52
5853 6098 2.449518 TCCTCCCCACTTGTGCCA 60.450 61.111 0.00 0.00 0.00 4.92
5854 6099 2.034221 GTCCTCCCCACTTGTGCC 59.966 66.667 0.00 0.00 0.00 5.01
5855 6100 0.606673 GAAGTCCTCCCCACTTGTGC 60.607 60.000 0.00 0.00 34.10 4.57
5856 6101 0.764890 TGAAGTCCTCCCCACTTGTG 59.235 55.000 0.00 0.00 34.10 3.33
5857 6102 0.765510 GTGAAGTCCTCCCCACTTGT 59.234 55.000 0.00 0.00 34.10 3.16
5858 6103 0.036875 GGTGAAGTCCTCCCCACTTG 59.963 60.000 0.00 0.00 34.10 3.16
5859 6104 0.401395 TGGTGAAGTCCTCCCCACTT 60.401 55.000 0.00 0.00 36.77 3.16
5860 6105 1.128188 GTGGTGAAGTCCTCCCCACT 61.128 60.000 0.00 0.00 41.83 4.00
5861 6106 1.128188 AGTGGTGAAGTCCTCCCCAC 61.128 60.000 0.00 0.00 44.69 4.61
5862 6107 1.127567 CAGTGGTGAAGTCCTCCCCA 61.128 60.000 0.00 0.00 0.00 4.96
5863 6108 1.679898 CAGTGGTGAAGTCCTCCCC 59.320 63.158 0.00 0.00 0.00 4.81
5864 6109 1.003233 GCAGTGGTGAAGTCCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
5865 6110 1.374758 CGCAGTGGTGAAGTCCTCC 60.375 63.158 0.00 0.00 0.00 4.30
5866 6111 2.029844 GCGCAGTGGTGAAGTCCTC 61.030 63.158 0.30 0.00 0.00 3.71
5867 6112 2.031163 GCGCAGTGGTGAAGTCCT 59.969 61.111 0.30 0.00 0.00 3.85
5868 6113 3.050275 GGCGCAGTGGTGAAGTCC 61.050 66.667 10.83 0.00 0.00 3.85
5869 6114 2.280797 TGGCGCAGTGGTGAAGTC 60.281 61.111 10.83 0.00 0.00 3.01
5870 6115 2.281070 CTGGCGCAGTGGTGAAGT 60.281 61.111 10.83 0.00 0.00 3.01
5871 6116 3.052082 CCTGGCGCAGTGGTGAAG 61.052 66.667 10.83 0.00 0.00 3.02
5884 6129 1.140312 TATTTAGAGGGCAGGCCTGG 58.860 55.000 33.46 15.81 36.10 4.45
5885 6130 4.640771 TTATATTTAGAGGGCAGGCCTG 57.359 45.455 29.34 29.34 36.10 4.85
5886 6131 5.867757 AATTATATTTAGAGGGCAGGCCT 57.132 39.130 17.36 17.36 36.10 5.19
5887 6132 6.071334 GGAAAATTATATTTAGAGGGCAGGCC 60.071 42.308 4.33 4.33 0.00 5.19
5888 6133 6.721668 AGGAAAATTATATTTAGAGGGCAGGC 59.278 38.462 0.00 0.00 0.00 4.85
5889 6134 7.394641 GGAGGAAAATTATATTTAGAGGGCAGG 59.605 40.741 0.00 0.00 0.00 4.85
5890 6135 7.119846 CGGAGGAAAATTATATTTAGAGGGCAG 59.880 40.741 0.00 0.00 0.00 4.85
5891 6136 6.940298 CGGAGGAAAATTATATTTAGAGGGCA 59.060 38.462 0.00 0.00 0.00 5.36
5892 6137 7.379098 CGGAGGAAAATTATATTTAGAGGGC 57.621 40.000 0.00 0.00 0.00 5.19
5982 6232 7.953173 CCGGTGAAAAGAAAACAAAGTTTTTAC 59.047 33.333 9.00 0.00 31.22 2.01
5984 6234 6.566942 GCCGGTGAAAAGAAAACAAAGTTTTT 60.567 34.615 1.90 0.00 0.00 1.94
5999 6249 4.391155 ACTAACTTATGTGCCGGTGAAAA 58.609 39.130 1.90 0.00 0.00 2.29
6027 6277 6.055588 ACTGAACTTCACTAAAAAGCAGCTA 58.944 36.000 0.00 0.00 0.00 3.32
6086 6336 2.698855 ACATGGCTCGTCTGCTATTT 57.301 45.000 0.00 0.00 31.76 1.40
6114 6364 6.877322 TGAAACGGAGGGAGTAATTCTAAAAG 59.123 38.462 0.00 0.00 0.00 2.27
6126 6376 4.278419 ACAAGAATTTTGAAACGGAGGGAG 59.722 41.667 7.18 0.00 0.00 4.30
6127 6377 4.211920 ACAAGAATTTTGAAACGGAGGGA 58.788 39.130 7.18 0.00 0.00 4.20
6128 6378 4.278419 AGACAAGAATTTTGAAACGGAGGG 59.722 41.667 7.18 0.00 0.00 4.30
6129 6379 5.438761 AGACAAGAATTTTGAAACGGAGG 57.561 39.130 7.18 0.00 0.00 4.30
6130 6380 7.861630 TCTAAGACAAGAATTTTGAAACGGAG 58.138 34.615 7.18 0.00 0.00 4.63
6131 6381 7.795482 TCTAAGACAAGAATTTTGAAACGGA 57.205 32.000 7.18 0.00 0.00 4.69
6132 6382 9.463443 AAATCTAAGACAAGAATTTTGAAACGG 57.537 29.630 7.18 0.00 0.00 4.44
6144 6394 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
6145 6395 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
6146 6396 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
6147 6397 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
6148 6398 7.539366 GCATCCGTATCTAGACAAATCTAAGAC 59.461 40.741 0.00 0.00 36.98 3.01
6149 6399 7.230712 TGCATCCGTATCTAGACAAATCTAAGA 59.769 37.037 0.00 0.00 36.98 2.10
6150 6400 7.371159 TGCATCCGTATCTAGACAAATCTAAG 58.629 38.462 0.00 0.00 36.98 2.18
6151 6401 7.284919 TGCATCCGTATCTAGACAAATCTAA 57.715 36.000 0.00 0.00 36.98 2.10
6152 6402 6.894339 TGCATCCGTATCTAGACAAATCTA 57.106 37.500 0.00 0.00 36.29 1.98
6153 6403 5.791336 TGCATCCGTATCTAGACAAATCT 57.209 39.130 0.00 0.00 39.15 2.40
6154 6404 6.393990 AGATGCATCCGTATCTAGACAAATC 58.606 40.000 23.06 0.00 42.15 2.17
6155 6405 6.352016 AGATGCATCCGTATCTAGACAAAT 57.648 37.500 23.06 0.00 42.15 2.32
6156 6406 5.791336 AGATGCATCCGTATCTAGACAAA 57.209 39.130 23.06 0.00 42.15 2.83
6157 6407 6.894339 TTAGATGCATCCGTATCTAGACAA 57.106 37.500 23.06 0.00 44.49 3.18
6158 6408 7.829706 AGTATTAGATGCATCCGTATCTAGACA 59.170 37.037 23.06 0.00 44.49 3.41
6159 6409 8.215926 AGTATTAGATGCATCCGTATCTAGAC 57.784 38.462 23.06 10.03 44.49 2.59
6167 6417 8.749354 TCACATTATAGTATTAGATGCATCCGT 58.251 33.333 23.06 11.64 0.00 4.69
6168 6418 9.025020 GTCACATTATAGTATTAGATGCATCCG 57.975 37.037 23.06 0.00 0.00 4.18
6181 6431 9.074576 ACGGATGTATCAAGTCACATTATAGTA 57.925 33.333 0.00 0.00 35.55 1.82
6182 6432 7.952671 ACGGATGTATCAAGTCACATTATAGT 58.047 34.615 0.00 0.00 35.55 2.12
6183 6433 9.561270 CTACGGATGTATCAAGTCACATTATAG 57.439 37.037 0.00 0.00 35.55 1.31
6184 6434 9.292195 TCTACGGATGTATCAAGTCACATTATA 57.708 33.333 0.00 0.00 35.55 0.98
6185 6435 8.082852 GTCTACGGATGTATCAAGTCACATTAT 58.917 37.037 0.00 0.00 35.55 1.28
6186 6436 7.067737 TGTCTACGGATGTATCAAGTCACATTA 59.932 37.037 0.00 0.00 35.55 1.90
6187 6437 6.127451 TGTCTACGGATGTATCAAGTCACATT 60.127 38.462 0.00 0.00 35.55 2.71
6188 6438 5.359860 TGTCTACGGATGTATCAAGTCACAT 59.640 40.000 0.00 0.00 38.08 3.21
6189 6439 4.703093 TGTCTACGGATGTATCAAGTCACA 59.297 41.667 0.00 0.00 0.00 3.58
6190 6440 5.244785 TGTCTACGGATGTATCAAGTCAC 57.755 43.478 0.00 0.00 0.00 3.67
6191 6441 5.650703 TCTTGTCTACGGATGTATCAAGTCA 59.349 40.000 14.20 0.00 39.98 3.41
6192 6442 6.132791 TCTTGTCTACGGATGTATCAAGTC 57.867 41.667 14.20 0.00 39.98 3.01
6193 6443 6.525578 TTCTTGTCTACGGATGTATCAAGT 57.474 37.500 14.20 0.00 39.98 3.16
6194 6444 8.425577 AAATTCTTGTCTACGGATGTATCAAG 57.574 34.615 11.05 11.05 40.16 3.02
6195 6445 8.664798 CAAAATTCTTGTCTACGGATGTATCAA 58.335 33.333 0.00 0.00 0.00 2.57
6196 6446 7.279981 CCAAAATTCTTGTCTACGGATGTATCA 59.720 37.037 0.00 0.00 0.00 2.15
6197 6447 7.254795 CCCAAAATTCTTGTCTACGGATGTATC 60.255 40.741 0.00 0.00 0.00 2.24
6198 6448 6.542370 CCCAAAATTCTTGTCTACGGATGTAT 59.458 38.462 0.00 0.00 0.00 2.29
6199 6449 5.878116 CCCAAAATTCTTGTCTACGGATGTA 59.122 40.000 0.00 0.00 0.00 2.29
6200 6450 4.700213 CCCAAAATTCTTGTCTACGGATGT 59.300 41.667 0.00 0.00 0.00 3.06
6201 6451 4.941263 TCCCAAAATTCTTGTCTACGGATG 59.059 41.667 0.00 0.00 0.00 3.51
6202 6452 4.941873 GTCCCAAAATTCTTGTCTACGGAT 59.058 41.667 0.00 0.00 0.00 4.18
6203 6453 4.320870 GTCCCAAAATTCTTGTCTACGGA 58.679 43.478 0.00 0.00 0.00 4.69
6204 6454 3.124636 CGTCCCAAAATTCTTGTCTACGG 59.875 47.826 0.00 0.00 0.00 4.02
6205 6455 3.124636 CCGTCCCAAAATTCTTGTCTACG 59.875 47.826 0.00 0.00 0.00 3.51
6206 6456 4.320870 TCCGTCCCAAAATTCTTGTCTAC 58.679 43.478 0.00 0.00 0.00 2.59
6207 6457 4.564821 CCTCCGTCCCAAAATTCTTGTCTA 60.565 45.833 0.00 0.00 0.00 2.59
6208 6458 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
6209 6459 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
6210 6460 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
6211 6461 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
6212 6462 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
6213 6463 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
6214 6464 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
6215 6465 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
6216 6466 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
6217 6467 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
6218 6468 1.835531 GAATACTCCCTCCGTCCCAAA 59.164 52.381 0.00 0.00 0.00 3.28
6219 6469 1.273381 TGAATACTCCCTCCGTCCCAA 60.273 52.381 0.00 0.00 0.00 4.12
6220 6470 0.337082 TGAATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
6221 6471 1.492764 TTGAATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
6222 6472 3.622166 TTTTGAATACTCCCTCCGTCC 57.378 47.619 0.00 0.00 0.00 4.79
6223 6473 4.332819 CACATTTTGAATACTCCCTCCGTC 59.667 45.833 0.00 0.00 0.00 4.79
6224 6474 4.261801 CACATTTTGAATACTCCCTCCGT 58.738 43.478 0.00 0.00 0.00 4.69
6225 6475 3.627577 CCACATTTTGAATACTCCCTCCG 59.372 47.826 0.00 0.00 0.00 4.63
6226 6476 4.600062 ACCACATTTTGAATACTCCCTCC 58.400 43.478 0.00 0.00 0.00 4.30
6227 6477 7.227512 CAGATACCACATTTTGAATACTCCCTC 59.772 40.741 0.00 0.00 0.00 4.30
6228 6478 7.056635 CAGATACCACATTTTGAATACTCCCT 58.943 38.462 0.00 0.00 0.00 4.20
6229 6479 7.054124 TCAGATACCACATTTTGAATACTCCC 58.946 38.462 0.00 0.00 0.00 4.30
6230 6480 8.682936 ATCAGATACCACATTTTGAATACTCC 57.317 34.615 0.00 0.00 0.00 3.85
6279 6529 5.070580 ACAGGCCATAAATGACTACTCCTAC 59.929 44.000 5.01 0.00 0.00 3.18
6280 6530 5.216622 ACAGGCCATAAATGACTACTCCTA 58.783 41.667 5.01 0.00 0.00 2.94
6281 6531 4.040755 ACAGGCCATAAATGACTACTCCT 58.959 43.478 5.01 0.00 0.00 3.69
6282 6532 4.423625 ACAGGCCATAAATGACTACTCC 57.576 45.455 5.01 0.00 0.00 3.85
6283 6533 5.066505 CCAAACAGGCCATAAATGACTACTC 59.933 44.000 5.01 0.00 0.00 2.59
6284 6534 4.949856 CCAAACAGGCCATAAATGACTACT 59.050 41.667 5.01 0.00 0.00 2.57
6312 6562 0.670162 CCTGGTTGAGGTTGTTGCAG 59.330 55.000 0.00 0.00 37.02 4.41
6340 6590 2.629617 CCAAAGCCTCCAAAAGTCACAT 59.370 45.455 0.00 0.00 0.00 3.21
6362 6612 3.806521 GCATTTGCACACAACCAAACATA 59.193 39.130 0.00 0.00 41.59 2.29
6363 6613 2.613133 GCATTTGCACACAACCAAACAT 59.387 40.909 0.00 0.00 41.59 2.71
6435 6685 0.500597 GATCGATTCGAGCGTGCTTC 59.499 55.000 14.81 1.60 39.91 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.