Multiple sequence alignment - TraesCS5B01G321600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G321600 chr5B 100.000 4469 0 0 1 4469 506765365 506769833 0.000000e+00 8253
1 TraesCS5B01G321600 chr5B 86.900 1313 148 15 1964 3264 506780235 506781535 0.000000e+00 1450
2 TraesCS5B01G321600 chr5B 90.047 643 33 20 1103 1743 672818038 672817425 0.000000e+00 804
3 TraesCS5B01G321600 chr5B 91.827 416 26 7 207 619 589474646 589474236 1.390000e-159 573
4 TraesCS5B01G321600 chr5B 91.627 418 28 7 204 617 596916176 596915762 5.020000e-159 571
5 TraesCS5B01G321600 chr5B 89.398 415 44 0 1981 2395 506760392 506760806 1.420000e-144 523
6 TraesCS5B01G321600 chr5B 81.544 298 36 13 3324 3606 506781725 506782018 1.250000e-55 228
7 TraesCS5B01G321600 chr5B 83.636 220 20 10 1459 1665 506778902 506779118 4.560000e-45 193
8 TraesCS5B01G321600 chr5D 93.814 2247 123 9 1955 4196 420627337 420629572 0.000000e+00 3365
9 TraesCS5B01G321600 chr5D 89.732 896 45 14 627 1487 420624951 420625834 0.000000e+00 1101
10 TraesCS5B01G321600 chr5D 88.876 836 46 19 1119 1939 420626393 420627196 0.000000e+00 985
11 TraesCS5B01G321600 chr5D 90.909 528 48 0 2737 3264 420702918 420703445 0.000000e+00 710
12 TraesCS5B01G321600 chr5D 85.390 616 81 6 1986 2600 420701950 420702557 8.160000e-177 630
13 TraesCS5B01G321600 chr5D 88.835 412 46 0 1984 2395 420621704 420622115 1.430000e-139 507
14 TraesCS5B01G321600 chr5D 89.399 283 19 9 4193 4469 420629617 420629894 3.310000e-91 346
15 TraesCS5B01G321600 chr5D 83.268 257 28 9 3362 3606 420703699 420703952 5.820000e-54 222
16 TraesCS5B01G321600 chr5A 88.489 1277 110 10 1925 3201 534064555 534065794 0.000000e+00 1509
17 TraesCS5B01G321600 chr5A 85.188 1357 164 19 1956 3294 534108279 534109616 0.000000e+00 1358
18 TraesCS5B01G321600 chr5A 86.484 1317 76 40 651 1937 534063177 534064421 0.000000e+00 1352
19 TraesCS5B01G321600 chr5A 92.201 936 58 8 3267 4199 534066329 534067252 0.000000e+00 1310
20 TraesCS5B01G321600 chr5A 82.226 1339 178 37 1981 3297 534012443 534013743 0.000000e+00 1099
21 TraesCS5B01G321600 chr5A 82.510 263 36 6 3324 3582 534109685 534109941 5.820000e-54 222
22 TraesCS5B01G321600 chr7B 89.891 643 34 20 1103 1743 648274860 648275473 0.000000e+00 798
23 TraesCS5B01G321600 chr7B 89.269 643 38 19 1103 1743 126787272 126787885 0.000000e+00 776
24 TraesCS5B01G321600 chr7B 92.048 415 28 5 207 618 546015539 546015951 3.000000e-161 579
25 TraesCS5B01G321600 chr7B 92.067 416 24 8 207 617 499642453 499642864 1.080000e-160 577
26 TraesCS5B01G321600 chr7B 95.763 118 5 0 4 121 219593463 219593580 1.640000e-44 191
27 TraesCS5B01G321600 chr7B 95.726 117 5 0 4 120 413110953 413110837 5.900000e-44 189
28 TraesCS5B01G321600 chr7B 92.857 126 9 0 4 129 733702869 733702744 2.750000e-42 183
29 TraesCS5B01G321600 chr7A 89.580 643 35 11 1103 1743 636230858 636230246 0.000000e+00 787
30 TraesCS5B01G321600 chr3B 89.269 643 38 20 1103 1743 534166482 534167095 0.000000e+00 776
31 TraesCS5B01G321600 chr3B 92.363 419 24 7 202 617 818671181 818671594 1.380000e-164 590
32 TraesCS5B01G321600 chr3B 91.647 419 30 5 202 617 818626861 818627277 3.880000e-160 575
33 TraesCS5B01G321600 chr2B 89.465 636 36 20 1103 1736 331218755 331219361 0.000000e+00 774
34 TraesCS5B01G321600 chr2B 92.969 128 8 1 1 127 796028611 796028738 7.630000e-43 185
35 TraesCS5B01G321600 chr1B 93.494 415 22 5 207 618 593616364 593616776 2.950000e-171 612
36 TraesCS5B01G321600 chr1B 95.122 123 5 1 1 122 3653150 3653272 4.560000e-45 193
37 TraesCS5B01G321600 chr1B 95.798 119 5 0 4 122 279500438 279500320 4.560000e-45 193
38 TraesCS5B01G321600 chr1B 95.726 117 5 0 4 120 566984795 566984679 5.900000e-44 189
39 TraesCS5B01G321600 chr4B 92.476 412 27 4 207 617 123459603 123460011 1.790000e-163 586
40 TraesCS5B01G321600 chr4B 91.787 414 28 5 207 617 80960180 80960590 5.020000e-159 571
41 TraesCS5B01G321600 chr4B 92.913 127 9 0 1 127 40643480 40643606 7.630000e-43 185
42 TraesCS5B01G321600 chr6B 91.791 134 10 1 1 133 506705438 506705571 7.630000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G321600 chr5B 506765365 506769833 4468 False 8253.000000 8253 100.000000 1 4469 1 chr5B.!!$F2 4468
1 TraesCS5B01G321600 chr5B 672817425 672818038 613 True 804.000000 804 90.047000 1103 1743 1 chr5B.!!$R3 640
2 TraesCS5B01G321600 chr5B 506778902 506782018 3116 False 623.666667 1450 84.026667 1459 3606 3 chr5B.!!$F3 2147
3 TraesCS5B01G321600 chr5D 420621704 420629894 8190 False 1260.800000 3365 90.131200 627 4469 5 chr5D.!!$F1 3842
4 TraesCS5B01G321600 chr5D 420701950 420703952 2002 False 520.666667 710 86.522333 1986 3606 3 chr5D.!!$F2 1620
5 TraesCS5B01G321600 chr5A 534063177 534067252 4075 False 1390.333333 1509 89.058000 651 4199 3 chr5A.!!$F2 3548
6 TraesCS5B01G321600 chr5A 534012443 534013743 1300 False 1099.000000 1099 82.226000 1981 3297 1 chr5A.!!$F1 1316
7 TraesCS5B01G321600 chr5A 534108279 534109941 1662 False 790.000000 1358 83.849000 1956 3582 2 chr5A.!!$F3 1626
8 TraesCS5B01G321600 chr7B 648274860 648275473 613 False 798.000000 798 89.891000 1103 1743 1 chr7B.!!$F5 640
9 TraesCS5B01G321600 chr7B 126787272 126787885 613 False 776.000000 776 89.269000 1103 1743 1 chr7B.!!$F1 640
10 TraesCS5B01G321600 chr7A 636230246 636230858 612 True 787.000000 787 89.580000 1103 1743 1 chr7A.!!$R1 640
11 TraesCS5B01G321600 chr3B 534166482 534167095 613 False 776.000000 776 89.269000 1103 1743 1 chr3B.!!$F1 640
12 TraesCS5B01G321600 chr2B 331218755 331219361 606 False 774.000000 774 89.465000 1103 1736 1 chr2B.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.032952 ATGTGTACCGTTCACGCACT 59.967 50.0 4.11 0.0 39.07 4.40 F
613 614 0.105964 CCGGGCTCCACGATGAATTA 59.894 55.0 0.00 0.0 0.00 1.40 F
1714 5352 0.165944 GTCTTGTTTCACGGGCGATG 59.834 55.0 0.00 0.0 0.00 3.84 F
2924 7805 0.031716 AGCAGGAGGGTATCAGCTCA 60.032 55.0 0.00 0.0 36.44 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 6963 0.401738 TCTGGAACCAAGCTTCCTGG 59.598 55.000 0.0 0.0 40.56 4.45 R
2601 7325 3.076621 TCAGAACTACAATGCCAGCAAG 58.923 45.455 0.0 0.0 0.00 4.01 R
3185 8066 0.038618 TCGTGGTGAGGTGTTGATCG 60.039 55.000 0.0 0.0 0.00 3.69 R
4043 9718 1.053424 TTCAAACCCTAGACGCCAGT 58.947 50.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.833631 AACAAACAGGTAGGGACTCG 57.166 50.000 0.00 0.00 41.75 4.18
25 26 0.974383 ACAAACAGGTAGGGACTCGG 59.026 55.000 0.00 0.00 41.75 4.63
26 27 0.249398 CAAACAGGTAGGGACTCGGG 59.751 60.000 0.00 0.00 41.75 5.14
27 28 0.115745 AAACAGGTAGGGACTCGGGA 59.884 55.000 0.00 0.00 41.75 5.14
28 29 0.614134 AACAGGTAGGGACTCGGGAC 60.614 60.000 0.00 0.00 41.75 4.46
29 30 1.306970 CAGGTAGGGACTCGGGACT 59.693 63.158 0.00 0.00 41.75 3.85
31 32 1.064166 CAGGTAGGGACTCGGGACTTA 60.064 57.143 0.00 0.00 41.75 2.24
32 33 1.858246 AGGTAGGGACTCGGGACTTAT 59.142 52.381 0.00 0.00 41.75 1.73
33 34 3.059097 AGGTAGGGACTCGGGACTTATA 58.941 50.000 0.00 0.00 41.75 0.98
34 35 3.464833 AGGTAGGGACTCGGGACTTATAA 59.535 47.826 0.00 0.00 41.75 0.98
35 36 3.825585 GGTAGGGACTCGGGACTTATAAG 59.174 52.174 11.05 11.05 41.75 1.73
37 38 4.518590 GTAGGGACTCGGGACTTATAAGTC 59.481 50.000 29.84 29.84 46.96 3.01
51 52 7.081857 ACTTATAAGTCCCTGTAAACAACCA 57.918 36.000 12.50 0.00 32.86 3.67
52 53 7.166167 ACTTATAAGTCCCTGTAAACAACCAG 58.834 38.462 12.50 0.00 32.86 4.00
53 54 2.951229 AGTCCCTGTAAACAACCAGG 57.049 50.000 0.00 0.00 46.43 4.45
54 55 2.132686 AGTCCCTGTAAACAACCAGGT 58.867 47.619 5.09 0.00 45.61 4.00
55 56 3.320129 AGTCCCTGTAAACAACCAGGTA 58.680 45.455 0.00 0.00 45.61 3.08
56 57 3.717913 AGTCCCTGTAAACAACCAGGTAA 59.282 43.478 0.00 0.00 45.61 2.85
58 59 3.073356 TCCCTGTAAACAACCAGGTAAGG 59.927 47.826 0.00 0.00 45.61 2.69
59 60 3.073356 CCCTGTAAACAACCAGGTAAGGA 59.927 47.826 0.00 0.00 45.61 3.36
60 61 4.070009 CCTGTAAACAACCAGGTAAGGAC 58.930 47.826 0.00 0.00 42.72 3.85
61 62 4.202430 CCTGTAAACAACCAGGTAAGGACT 60.202 45.833 0.00 0.00 42.72 3.85
62 63 5.374071 CTGTAAACAACCAGGTAAGGACTT 58.626 41.667 0.00 0.00 0.00 3.01
63 64 6.464749 CCTGTAAACAACCAGGTAAGGACTTA 60.465 42.308 0.00 0.00 42.72 2.24
64 65 7.081857 TGTAAACAACCAGGTAAGGACTTAT 57.918 36.000 0.00 0.00 0.00 1.73
65 66 6.938030 TGTAAACAACCAGGTAAGGACTTATG 59.062 38.462 0.00 0.00 0.00 1.90
66 67 5.836024 AACAACCAGGTAAGGACTTATGA 57.164 39.130 0.00 0.00 0.00 2.15
67 68 5.161943 ACAACCAGGTAAGGACTTATGAC 57.838 43.478 0.00 0.00 0.00 3.06
68 69 4.844655 ACAACCAGGTAAGGACTTATGACT 59.155 41.667 0.00 0.00 0.00 3.41
69 70 5.309806 ACAACCAGGTAAGGACTTATGACTT 59.690 40.000 0.00 0.00 0.00 3.01
72 73 8.701895 CAACCAGGTAAGGACTTATGACTTATA 58.298 37.037 0.00 0.00 0.00 0.98
73 74 8.849543 ACCAGGTAAGGACTTATGACTTATAA 57.150 34.615 0.00 0.00 0.00 0.98
74 75 9.275572 ACCAGGTAAGGACTTATGACTTATAAA 57.724 33.333 0.00 0.00 31.12 1.40
82 83 9.004231 AGGACTTATGACTTATAAATTGGGACT 57.996 33.333 0.00 0.00 31.12 3.85
118 119 6.340962 AGGACTTATTAAACAAACAAGGCC 57.659 37.500 0.00 0.00 43.58 5.19
119 120 6.340962 GGACTTATTAAACAAACAAGGCCT 57.659 37.500 0.00 0.00 40.63 5.19
120 121 7.457024 GGACTTATTAAACAAACAAGGCCTA 57.543 36.000 5.16 0.00 40.63 3.93
121 122 7.888424 GGACTTATTAAACAAACAAGGCCTAA 58.112 34.615 5.16 0.00 40.63 2.69
122 123 8.528643 GGACTTATTAAACAAACAAGGCCTAAT 58.471 33.333 5.16 0.54 40.63 1.73
124 125 9.923143 ACTTATTAAACAAACAAGGCCTAATTC 57.077 29.630 5.16 0.00 0.00 2.17
126 127 9.921637 TTATTAAACAAACAAGGCCTAATTCTG 57.078 29.630 5.16 1.80 0.00 3.02
127 128 7.589958 TTAAACAAACAAGGCCTAATTCTGA 57.410 32.000 5.16 0.00 0.00 3.27
129 130 6.670695 AACAAACAAGGCCTAATTCTGAAT 57.329 33.333 5.16 0.00 0.00 2.57
130 131 6.670695 ACAAACAAGGCCTAATTCTGAATT 57.329 33.333 18.64 18.64 34.90 2.17
131 132 6.458210 ACAAACAAGGCCTAATTCTGAATTG 58.542 36.000 22.47 13.25 32.38 2.32
133 134 3.448660 ACAAGGCCTAATTCTGAATTGGC 59.551 43.478 28.88 28.88 40.85 4.52
134 135 3.386932 AGGCCTAATTCTGAATTGGCA 57.613 42.857 32.76 16.16 42.10 4.92
135 136 3.711863 AGGCCTAATTCTGAATTGGCAA 58.288 40.909 32.76 15.91 42.10 4.52
137 138 4.718276 AGGCCTAATTCTGAATTGGCAAAT 59.282 37.500 32.76 23.79 42.10 2.32
138 139 5.052481 GGCCTAATTCTGAATTGGCAAATC 58.948 41.667 32.76 22.28 42.10 2.17
140 141 5.284079 CCTAATTCTGAATTGGCAAATCCG 58.716 41.667 22.47 6.61 37.80 4.18
141 142 5.067674 CCTAATTCTGAATTGGCAAATCCGA 59.932 40.000 22.47 8.89 37.80 4.55
152 153 6.522625 TTGGCAAATCCGATTCAAAATAGA 57.477 33.333 0.00 0.00 37.80 1.98
153 154 6.522625 TGGCAAATCCGATTCAAAATAGAA 57.477 33.333 0.00 0.00 37.80 2.10
155 156 5.460091 GGCAAATCCGATTCAAAATAGAAGC 59.540 40.000 0.00 0.00 0.00 3.86
156 157 5.460091 GCAAATCCGATTCAAAATAGAAGCC 59.540 40.000 0.00 0.00 30.47 4.35
157 158 5.424121 AATCCGATTCAAAATAGAAGCCG 57.576 39.130 0.00 0.00 30.47 5.52
158 159 3.202906 TCCGATTCAAAATAGAAGCCGG 58.797 45.455 0.00 0.00 43.21 6.13
160 161 2.290641 CGATTCAAAATAGAAGCCGGGG 59.709 50.000 2.18 0.00 30.47 5.73
161 162 1.470051 TTCAAAATAGAAGCCGGGGC 58.530 50.000 2.18 0.18 42.33 5.80
162 163 0.329931 TCAAAATAGAAGCCGGGGCA 59.670 50.000 12.97 0.00 44.88 5.36
163 164 1.181786 CAAAATAGAAGCCGGGGCAA 58.818 50.000 12.97 0.00 44.88 4.52
164 165 1.134946 CAAAATAGAAGCCGGGGCAAG 59.865 52.381 12.97 0.00 44.88 4.01
165 166 0.623723 AAATAGAAGCCGGGGCAAGA 59.376 50.000 12.97 0.00 44.88 3.02
167 168 2.311688 ATAGAAGCCGGGGCAAGACG 62.312 60.000 12.97 0.00 44.88 4.18
168 169 4.388499 GAAGCCGGGGCAAGACGA 62.388 66.667 12.97 0.00 44.88 4.20
169 170 3.894547 GAAGCCGGGGCAAGACGAA 62.895 63.158 12.97 0.00 44.88 3.85
172 173 1.227853 GCCGGGGCAAGACGAATAT 60.228 57.895 2.18 0.00 41.49 1.28
175 176 1.831389 CGGGGCAAGACGAATATGCG 61.831 60.000 0.14 0.14 40.94 4.73
176 177 0.531974 GGGGCAAGACGAATATGCGA 60.532 55.000 10.90 0.00 40.94 5.10
177 178 0.582005 GGGCAAGACGAATATGCGAC 59.418 55.000 10.90 3.29 40.94 5.19
178 179 0.229753 GGCAAGACGAATATGCGACG 59.770 55.000 10.90 0.29 40.94 5.12
179 180 0.229753 GCAAGACGAATATGCGACGG 59.770 55.000 10.90 3.10 34.83 4.79
180 181 0.229753 CAAGACGAATATGCGACGGC 59.770 55.000 10.90 0.00 40.52 5.68
189 190 3.700970 TGCGACGGCAGGATGGAA 61.701 61.111 0.00 0.00 46.21 3.53
190 191 2.203070 GCGACGGCAGGATGGAAT 60.203 61.111 0.00 0.00 39.62 3.01
191 192 1.069090 GCGACGGCAGGATGGAATA 59.931 57.895 0.00 0.00 39.62 1.75
193 194 1.502231 CGACGGCAGGATGGAATAAG 58.498 55.000 0.00 0.00 35.86 1.73
194 195 1.230324 GACGGCAGGATGGAATAAGC 58.770 55.000 0.00 0.00 35.86 3.09
195 196 0.839946 ACGGCAGGATGGAATAAGCT 59.160 50.000 0.00 0.00 35.86 3.74
196 197 1.233019 CGGCAGGATGGAATAAGCTG 58.767 55.000 0.00 0.00 35.86 4.24
197 198 0.957362 GGCAGGATGGAATAAGCTGC 59.043 55.000 0.00 0.00 35.86 5.25
198 199 0.590195 GCAGGATGGAATAAGCTGCG 59.410 55.000 0.00 0.00 35.86 5.18
199 200 0.590195 CAGGATGGAATAAGCTGCGC 59.410 55.000 0.00 0.00 0.00 6.09
202 203 1.610522 GGATGGAATAAGCTGCGCATT 59.389 47.619 12.24 5.90 0.00 3.56
203 204 2.035066 GGATGGAATAAGCTGCGCATTT 59.965 45.455 12.24 11.69 0.00 2.32
204 205 2.849880 TGGAATAAGCTGCGCATTTC 57.150 45.000 12.24 9.38 0.00 2.17
205 206 2.090760 TGGAATAAGCTGCGCATTTCA 58.909 42.857 12.24 3.57 0.00 2.69
206 207 2.097954 TGGAATAAGCTGCGCATTTCAG 59.902 45.455 12.24 0.00 34.79 3.02
207 208 2.355756 GGAATAAGCTGCGCATTTCAGA 59.644 45.455 12.24 0.00 33.54 3.27
208 209 3.357897 GAATAAGCTGCGCATTTCAGAC 58.642 45.455 12.24 0.00 33.54 3.51
215 216 2.094659 CGCATTTCAGACGCGGAGT 61.095 57.895 12.47 0.00 45.08 3.85
216 217 1.626654 CGCATTTCAGACGCGGAGTT 61.627 55.000 12.47 0.00 45.08 3.01
217 218 0.517316 GCATTTCAGACGCGGAGTTT 59.483 50.000 12.47 0.00 0.00 2.66
219 220 2.574322 CATTTCAGACGCGGAGTTTTG 58.426 47.619 12.47 0.00 0.00 2.44
221 222 1.503818 TTCAGACGCGGAGTTTTGGC 61.504 55.000 12.47 0.00 0.00 4.52
223 224 1.668151 AGACGCGGAGTTTTGGCTC 60.668 57.895 12.47 0.00 34.89 4.70
229 230 3.062466 GAGTTTTGGCTCCCGGGC 61.062 66.667 18.49 4.47 41.27 6.13
230 231 3.569200 GAGTTTTGGCTCCCGGGCT 62.569 63.158 18.49 3.64 41.48 5.19
231 232 3.062466 GTTTTGGCTCCCGGGCTC 61.062 66.667 18.49 9.71 41.48 4.70
233 234 2.917897 TTTTGGCTCCCGGGCTCAT 61.918 57.895 18.49 0.00 41.48 2.90
236 237 4.247380 GGCTCCCGGGCTCATCTG 62.247 72.222 18.49 0.33 37.53 2.90
239 240 1.742768 CTCCCGGGCTCATCTGTAC 59.257 63.158 18.49 0.00 0.00 2.90
240 241 1.749334 CTCCCGGGCTCATCTGTACC 61.749 65.000 18.49 0.00 0.00 3.34
242 243 2.063979 CCGGGCTCATCTGTACCCA 61.064 63.158 0.00 0.00 42.97 4.51
243 244 1.410850 CCGGGCTCATCTGTACCCAT 61.411 60.000 0.00 0.00 42.97 4.00
245 246 0.536006 GGGCTCATCTGTACCCATGC 60.536 60.000 0.00 0.00 42.33 4.06
246 247 0.471617 GGCTCATCTGTACCCATGCT 59.528 55.000 0.00 0.00 0.00 3.79
247 248 1.133976 GGCTCATCTGTACCCATGCTT 60.134 52.381 0.00 0.00 0.00 3.91
248 249 2.104792 GGCTCATCTGTACCCATGCTTA 59.895 50.000 0.00 0.00 0.00 3.09
249 250 3.397482 GCTCATCTGTACCCATGCTTAG 58.603 50.000 0.00 0.00 0.00 2.18
250 251 3.070159 GCTCATCTGTACCCATGCTTAGA 59.930 47.826 0.00 0.00 0.00 2.10
251 252 4.443457 GCTCATCTGTACCCATGCTTAGAA 60.443 45.833 0.00 0.00 0.00 2.10
253 254 6.061022 TCATCTGTACCCATGCTTAGAAAA 57.939 37.500 0.00 0.00 0.00 2.29
254 255 6.480763 TCATCTGTACCCATGCTTAGAAAAA 58.519 36.000 0.00 0.00 0.00 1.94
322 323 7.403312 TTTGTGGTGGTAGATAATTTGATGG 57.597 36.000 0.00 0.00 0.00 3.51
323 324 5.445069 TGTGGTGGTAGATAATTTGATGGG 58.555 41.667 0.00 0.00 0.00 4.00
324 325 5.044476 TGTGGTGGTAGATAATTTGATGGGT 60.044 40.000 0.00 0.00 0.00 4.51
325 326 5.299279 GTGGTGGTAGATAATTTGATGGGTG 59.701 44.000 0.00 0.00 0.00 4.61
326 327 5.192722 TGGTGGTAGATAATTTGATGGGTGA 59.807 40.000 0.00 0.00 0.00 4.02
327 328 5.765182 GGTGGTAGATAATTTGATGGGTGAG 59.235 44.000 0.00 0.00 0.00 3.51
332 333 1.176527 AATTTGATGGGTGAGGTGCG 58.823 50.000 0.00 0.00 0.00 5.34
333 334 1.315257 ATTTGATGGGTGAGGTGCGC 61.315 55.000 0.00 0.00 0.00 6.09
334 335 3.918253 TTGATGGGTGAGGTGCGCC 62.918 63.158 8.71 8.71 46.77 6.53
339 340 4.966787 GGTGAGGTGCGCCCCAAA 62.967 66.667 12.68 0.00 41.49 3.28
340 341 2.909965 GTGAGGTGCGCCCCAAAA 60.910 61.111 12.68 0.00 34.57 2.44
341 342 2.123683 TGAGGTGCGCCCCAAAAA 60.124 55.556 12.68 0.00 34.57 1.94
343 344 1.215382 GAGGTGCGCCCCAAAAATC 59.785 57.895 12.68 0.00 34.57 2.17
344 345 1.531739 GAGGTGCGCCCCAAAAATCA 61.532 55.000 12.68 0.00 34.57 2.57
345 346 1.118356 AGGTGCGCCCCAAAAATCAA 61.118 50.000 12.68 0.00 34.57 2.57
346 347 0.948623 GGTGCGCCCCAAAAATCAAC 60.949 55.000 3.18 0.00 0.00 3.18
347 348 0.033366 GTGCGCCCCAAAAATCAACT 59.967 50.000 4.18 0.00 0.00 3.16
348 349 0.316841 TGCGCCCCAAAAATCAACTC 59.683 50.000 4.18 0.00 0.00 3.01
349 350 0.316841 GCGCCCCAAAAATCAACTCA 59.683 50.000 0.00 0.00 0.00 3.41
350 351 1.066929 GCGCCCCAAAAATCAACTCAT 60.067 47.619 0.00 0.00 0.00 2.90
364 365 5.362556 TCAACTCATTTGAGCAACTAAGC 57.637 39.130 7.48 0.00 45.79 3.09
365 366 4.821260 TCAACTCATTTGAGCAACTAAGCA 59.179 37.500 7.48 0.00 45.79 3.91
366 367 5.049198 TCAACTCATTTGAGCAACTAAGCAG 60.049 40.000 7.48 0.00 45.79 4.24
368 369 3.415212 TCATTTGAGCAACTAAGCAGCT 58.585 40.909 0.00 0.00 42.17 4.24
372 373 3.432517 AGCAACTAAGCAGCTCTCG 57.567 52.632 0.00 0.00 32.05 4.04
375 376 0.390340 CAACTAAGCAGCTCTCGGCA 60.390 55.000 0.00 0.00 44.79 5.69
376 377 0.321671 AACTAAGCAGCTCTCGGCAA 59.678 50.000 0.00 0.00 44.79 4.52
377 378 0.321671 ACTAAGCAGCTCTCGGCAAA 59.678 50.000 0.00 0.00 44.79 3.68
378 379 1.270839 ACTAAGCAGCTCTCGGCAAAA 60.271 47.619 0.00 0.00 44.79 2.44
379 380 1.806542 CTAAGCAGCTCTCGGCAAAAA 59.193 47.619 0.00 0.00 44.79 1.94
400 401 7.654022 AAAAAGACAAAATCAGGGTCTGTAA 57.346 32.000 0.00 0.00 40.80 2.41
401 402 7.654022 AAAAGACAAAATCAGGGTCTGTAAA 57.346 32.000 0.00 0.00 40.80 2.01
402 403 7.654022 AAAGACAAAATCAGGGTCTGTAAAA 57.346 32.000 0.00 0.00 40.80 1.52
403 404 7.654022 AAGACAAAATCAGGGTCTGTAAAAA 57.346 32.000 0.00 0.00 40.80 1.94
404 405 7.839680 AGACAAAATCAGGGTCTGTAAAAAT 57.160 32.000 0.00 0.00 40.21 1.82
406 407 7.287696 AGACAAAATCAGGGTCTGTAAAAATGT 59.712 33.333 0.00 0.00 40.21 2.71
407 408 7.209475 ACAAAATCAGGGTCTGTAAAAATGTG 58.791 34.615 0.00 0.00 32.61 3.21
408 409 6.976934 AAATCAGGGTCTGTAAAAATGTGT 57.023 33.333 0.00 0.00 32.61 3.72
410 411 7.448748 AATCAGGGTCTGTAAAAATGTGTAC 57.551 36.000 0.00 0.00 32.61 2.90
411 412 5.310451 TCAGGGTCTGTAAAAATGTGTACC 58.690 41.667 0.00 0.00 32.61 3.34
412 413 4.153475 CAGGGTCTGTAAAAATGTGTACCG 59.847 45.833 0.00 0.00 0.00 4.02
414 415 4.516321 GGGTCTGTAAAAATGTGTACCGTT 59.484 41.667 0.00 0.00 0.00 4.44
415 416 5.334337 GGGTCTGTAAAAATGTGTACCGTTC 60.334 44.000 0.00 0.00 0.00 3.95
416 417 5.236911 GGTCTGTAAAAATGTGTACCGTTCA 59.763 40.000 0.00 0.00 0.00 3.18
417 418 6.131389 GTCTGTAAAAATGTGTACCGTTCAC 58.869 40.000 1.52 1.52 36.48 3.18
418 419 5.050904 TCTGTAAAAATGTGTACCGTTCACG 60.051 40.000 4.11 0.00 38.48 4.35
421 422 0.863144 AATGTGTACCGTTCACGCAC 59.137 50.000 4.11 0.00 39.07 5.34
422 423 0.032952 ATGTGTACCGTTCACGCACT 59.967 50.000 4.11 0.00 39.07 4.40
423 424 0.872451 TGTGTACCGTTCACGCACTG 60.872 55.000 4.11 0.00 38.48 3.66
425 426 0.179105 TGTACCGTTCACGCACTGTT 60.179 50.000 0.00 0.00 38.18 3.16
426 427 0.932399 GTACCGTTCACGCACTGTTT 59.068 50.000 0.00 0.00 38.18 2.83
429 430 0.375454 CCGTTCACGCACTGTTTTGA 59.625 50.000 0.00 0.00 38.18 2.69
430 431 1.452717 CGTTCACGCACTGTTTTGAC 58.547 50.000 0.00 0.00 0.00 3.18
432 433 0.736053 TTCACGCACTGTTTTGACCC 59.264 50.000 0.00 0.00 0.00 4.46
433 434 1.010125 CACGCACTGTTTTGACCCG 60.010 57.895 0.00 0.00 0.00 5.28
434 435 1.153329 ACGCACTGTTTTGACCCGA 60.153 52.632 0.00 0.00 0.00 5.14
435 436 0.534203 ACGCACTGTTTTGACCCGAT 60.534 50.000 0.00 0.00 0.00 4.18
436 437 0.591170 CGCACTGTTTTGACCCGATT 59.409 50.000 0.00 0.00 0.00 3.34
437 438 1.001815 CGCACTGTTTTGACCCGATTT 60.002 47.619 0.00 0.00 0.00 2.17
438 439 2.393764 GCACTGTTTTGACCCGATTTG 58.606 47.619 0.00 0.00 0.00 2.32
439 440 2.223711 GCACTGTTTTGACCCGATTTGT 60.224 45.455 0.00 0.00 0.00 2.83
440 441 3.628017 CACTGTTTTGACCCGATTTGTC 58.372 45.455 0.00 0.00 0.00 3.18
445 446 5.725362 TGTTTTGACCCGATTTGTCTTTTT 58.275 33.333 0.00 0.00 33.83 1.94
461 462 2.238942 TTTTTGTCGAGAGCTGCTCA 57.761 45.000 29.49 8.25 44.15 4.26
462 463 1.788258 TTTTGTCGAGAGCTGCTCAG 58.212 50.000 29.49 22.14 44.15 3.35
463 464 0.961753 TTTGTCGAGAGCTGCTCAGA 59.038 50.000 29.49 23.86 44.15 3.27
464 465 1.180907 TTGTCGAGAGCTGCTCAGAT 58.819 50.000 29.49 10.97 44.15 2.90
465 466 0.455005 TGTCGAGAGCTGCTCAGATG 59.545 55.000 29.49 16.19 44.15 2.90
466 467 0.455410 GTCGAGAGCTGCTCAGATGT 59.545 55.000 29.49 10.20 44.15 3.06
467 468 1.135141 GTCGAGAGCTGCTCAGATGTT 60.135 52.381 29.49 9.44 44.15 2.71
468 469 1.133982 TCGAGAGCTGCTCAGATGTTC 59.866 52.381 29.49 16.52 44.15 3.18
470 471 2.673326 CGAGAGCTGCTCAGATGTTCAA 60.673 50.000 29.49 0.00 44.15 2.69
471 472 3.332919 GAGAGCTGCTCAGATGTTCAAA 58.667 45.455 29.49 0.00 43.38 2.69
472 473 3.940221 GAGAGCTGCTCAGATGTTCAAAT 59.060 43.478 29.49 5.90 43.38 2.32
473 474 3.690139 AGAGCTGCTCAGATGTTCAAATG 59.310 43.478 29.49 0.00 32.06 2.32
476 477 3.439476 GCTGCTCAGATGTTCAAATGAGT 59.561 43.478 14.50 0.00 41.00 3.41
477 478 4.082895 GCTGCTCAGATGTTCAAATGAGTT 60.083 41.667 14.50 0.00 41.00 3.01
478 479 5.366829 TGCTCAGATGTTCAAATGAGTTG 57.633 39.130 14.50 0.00 41.00 3.16
479 480 5.065235 TGCTCAGATGTTCAAATGAGTTGA 58.935 37.500 14.50 0.00 44.74 3.18
493 494 4.305989 TGAGTTGAATTTTGAGGTGCAC 57.694 40.909 8.80 8.80 0.00 4.57
494 495 3.068024 TGAGTTGAATTTTGAGGTGCACC 59.932 43.478 29.22 29.22 0.00 5.01
503 504 2.048503 AGGTGCACCTTACGCGTC 60.049 61.111 33.20 4.02 46.09 5.19
504 505 2.356553 GGTGCACCTTACGCGTCA 60.357 61.111 29.12 3.02 0.00 4.35
505 506 1.957186 GGTGCACCTTACGCGTCAA 60.957 57.895 29.12 8.03 0.00 3.18
508 509 1.069500 GTGCACCTTACGCGTCAAATT 60.069 47.619 18.63 0.00 0.00 1.82
509 510 2.158058 GTGCACCTTACGCGTCAAATTA 59.842 45.455 18.63 0.00 0.00 1.40
510 511 3.004171 TGCACCTTACGCGTCAAATTAT 58.996 40.909 18.63 0.00 0.00 1.28
511 512 3.062909 TGCACCTTACGCGTCAAATTATC 59.937 43.478 18.63 0.00 0.00 1.75
514 515 5.555818 GCACCTTACGCGTCAAATTATCTAC 60.556 44.000 18.63 0.00 0.00 2.59
517 518 5.051240 CCTTACGCGTCAAATTATCTACCAC 60.051 44.000 18.63 0.00 0.00 4.16
518 519 3.192466 ACGCGTCAAATTATCTACCACC 58.808 45.455 5.58 0.00 0.00 4.61
519 520 3.191669 CGCGTCAAATTATCTACCACCA 58.808 45.455 0.00 0.00 0.00 4.17
520 521 3.807622 CGCGTCAAATTATCTACCACCAT 59.192 43.478 0.00 0.00 0.00 3.55
521 522 4.986034 CGCGTCAAATTATCTACCACCATA 59.014 41.667 0.00 0.00 0.00 2.74
522 523 5.464057 CGCGTCAAATTATCTACCACCATAA 59.536 40.000 0.00 0.00 0.00 1.90
523 524 6.018588 CGCGTCAAATTATCTACCACCATAAA 60.019 38.462 0.00 0.00 0.00 1.40
524 525 7.466185 CGCGTCAAATTATCTACCACCATAAAA 60.466 37.037 0.00 0.00 0.00 1.52
526 527 9.716507 CGTCAAATTATCTACCACCATAAAAAG 57.283 33.333 0.00 0.00 0.00 2.27
533 534 9.983024 TTATCTACCACCATAAAAAGATTTGGA 57.017 29.630 0.00 0.00 0.00 3.53
534 535 8.893563 ATCTACCACCATAAAAAGATTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
535 536 8.893563 TCTACCACCATAAAAAGATTTGGAAT 57.106 30.769 0.00 0.00 0.00 3.01
536 537 9.320295 TCTACCACCATAAAAAGATTTGGAATT 57.680 29.630 0.00 0.00 0.00 2.17
537 538 9.942850 CTACCACCATAAAAAGATTTGGAATTT 57.057 29.630 0.00 0.00 0.00 1.82
539 540 9.639563 ACCACCATAAAAAGATTTGGAATTTTT 57.360 25.926 0.00 0.00 39.01 1.94
611 612 2.505982 CCGGGCTCCACGATGAAT 59.494 61.111 0.00 0.00 0.00 2.57
612 613 1.153168 CCGGGCTCCACGATGAATT 60.153 57.895 0.00 0.00 0.00 2.17
613 614 0.105964 CCGGGCTCCACGATGAATTA 59.894 55.000 0.00 0.00 0.00 1.40
614 615 1.270839 CCGGGCTCCACGATGAATTAT 60.271 52.381 0.00 0.00 0.00 1.28
615 616 2.069273 CGGGCTCCACGATGAATTATC 58.931 52.381 0.00 0.00 0.00 1.75
626 627 4.410492 GATGAATTATCGGCGCATTTCT 57.590 40.909 10.83 0.00 0.00 2.52
629 630 4.597079 TGAATTATCGGCGCATTTCTTTC 58.403 39.130 10.83 6.07 0.00 2.62
630 631 4.335315 TGAATTATCGGCGCATTTCTTTCT 59.665 37.500 10.83 0.00 0.00 2.52
637 3259 3.245797 GGCGCATTTCTTTCTTCCTTTC 58.754 45.455 10.83 0.00 0.00 2.62
645 3267 1.266989 CTTTCTTCCTTTCGTGCACCC 59.733 52.381 12.15 0.00 0.00 4.61
664 3286 3.522731 CCGCTCCCTCTCCGTCTG 61.523 72.222 0.00 0.00 0.00 3.51
667 3289 3.151022 CTCCCTCTCCGTCTGCCC 61.151 72.222 0.00 0.00 0.00 5.36
741 3366 2.127708 GAACTGTGGGTATCCATCCCT 58.872 52.381 0.00 0.00 46.09 4.20
742 3367 3.311028 TGAACTGTGGGTATCCATCCCTA 60.311 47.826 0.00 0.00 46.09 3.53
832 3462 2.456119 CCTCAATCTCACCGTGCGC 61.456 63.158 0.00 0.00 0.00 6.09
894 3531 4.348168 TGGCCAGATCCTCCTATAAAGAAC 59.652 45.833 0.00 0.00 0.00 3.01
895 3532 4.348168 GGCCAGATCCTCCTATAAAGAACA 59.652 45.833 0.00 0.00 0.00 3.18
906 3543 6.346096 TCCTATAAAGAACAGAAATCCACCG 58.654 40.000 0.00 0.00 0.00 4.94
914 3551 0.179004 AGAAATCCACCGCAACCACA 60.179 50.000 0.00 0.00 0.00 4.17
921 3558 1.896660 ACCGCAACCACAAATCGCT 60.897 52.632 0.00 0.00 0.00 4.93
928 3565 3.479006 CAACCACAAATCGCTACTTTCG 58.521 45.455 0.00 0.00 0.00 3.46
934 3571 0.391130 AATCGCTACTTTCGCCAGCA 60.391 50.000 0.00 0.00 34.94 4.41
1310 3963 0.386985 GTCGTCTTCACAGGTCCGAC 60.387 60.000 0.00 0.00 38.03 4.79
1311 3964 1.080705 CGTCTTCACAGGTCCGACC 60.081 63.158 9.81 9.81 38.99 4.79
1502 5092 0.965363 CACTGAAATTGGGTCGGGGG 60.965 60.000 0.00 0.00 0.00 5.40
1505 5095 0.707616 TGAAATTGGGTCGGGGGAAT 59.292 50.000 0.00 0.00 0.00 3.01
1529 5119 2.832643 ATTCTGACCATGCCCAATCA 57.167 45.000 0.00 0.00 0.00 2.57
1543 5137 1.153086 AATCACTCATCTGCCGGGC 60.153 57.895 13.32 13.32 0.00 6.13
1555 5149 1.818674 CTGCCGGGCTTTCAGTTAATT 59.181 47.619 21.46 0.00 0.00 1.40
1569 5164 6.801539 TCAGTTAATTGATTGTCTGTCCAC 57.198 37.500 0.00 0.00 0.00 4.02
1634 5247 2.757894 TGGAGCTAAACCCCAAACAA 57.242 45.000 0.00 0.00 0.00 2.83
1635 5248 3.033659 TGGAGCTAAACCCCAAACAAA 57.966 42.857 0.00 0.00 0.00 2.83
1714 5352 0.165944 GTCTTGTTTCACGGGCGATG 59.834 55.000 0.00 0.00 0.00 3.84
1731 5369 3.367292 GCGATGTTGGTGATGTTTCCAAT 60.367 43.478 0.00 0.00 44.03 3.16
1792 5589 4.227538 AGAAACACTGAGATTACGACACG 58.772 43.478 0.00 0.00 0.00 4.49
1793 5590 1.978542 ACACTGAGATTACGACACGC 58.021 50.000 0.00 0.00 0.00 5.34
1794 5591 1.268625 ACACTGAGATTACGACACGCA 59.731 47.619 0.00 0.00 0.00 5.24
1795 5592 1.649171 CACTGAGATTACGACACGCAC 59.351 52.381 0.00 0.00 0.00 5.34
1796 5593 1.268625 ACTGAGATTACGACACGCACA 59.731 47.619 0.00 0.00 0.00 4.57
1797 5594 1.649171 CTGAGATTACGACACGCACAC 59.351 52.381 0.00 0.00 0.00 3.82
1799 5596 1.056750 GATTACGACACGCACACGC 59.943 57.895 0.00 0.00 45.53 5.34
1800 5597 1.610715 GATTACGACACGCACACGCA 61.611 55.000 0.00 0.00 45.53 5.24
1830 5627 5.178252 CAGCGATAATTTGTGCTACTATGCT 59.822 40.000 0.00 0.00 35.56 3.79
1854 5651 5.550232 TTGCAGTGATAGTAATTGTGCAG 57.450 39.130 0.00 0.00 40.31 4.41
1885 5682 1.679944 GCTTTCAGTCATAGCAGGGCA 60.680 52.381 0.00 0.00 35.05 5.36
1891 5688 3.054139 TCAGTCATAGCAGGGCAATCTTT 60.054 43.478 0.00 0.00 0.00 2.52
1892 5689 3.698040 CAGTCATAGCAGGGCAATCTTTT 59.302 43.478 0.00 0.00 0.00 2.27
1893 5690 4.159135 CAGTCATAGCAGGGCAATCTTTTT 59.841 41.667 0.00 0.00 0.00 1.94
1939 5743 8.229253 TCTGAAAAATTGTGCATAGATAGCAT 57.771 30.769 0.00 0.00 44.79 3.79
1942 5746 6.720112 AAAATTGTGCATAGATAGCATGGT 57.280 33.333 1.62 1.62 44.79 3.55
1943 5747 6.720112 AAATTGTGCATAGATAGCATGGTT 57.280 33.333 1.12 0.00 44.79 3.67
1944 5748 5.954296 ATTGTGCATAGATAGCATGGTTC 57.046 39.130 1.12 0.77 44.79 3.62
1946 5750 3.069443 TGTGCATAGATAGCATGGTTCGA 59.931 43.478 1.12 0.00 44.79 3.71
1947 5751 4.058124 GTGCATAGATAGCATGGTTCGAA 58.942 43.478 1.12 0.00 44.79 3.71
1948 5752 4.511454 GTGCATAGATAGCATGGTTCGAAA 59.489 41.667 1.12 0.00 44.79 3.46
1949 5753 5.180117 GTGCATAGATAGCATGGTTCGAAAT 59.820 40.000 1.12 0.00 44.79 2.17
1950 5754 6.368791 GTGCATAGATAGCATGGTTCGAAATA 59.631 38.462 1.12 0.00 44.79 1.40
1951 5755 6.591448 TGCATAGATAGCATGGTTCGAAATAG 59.409 38.462 1.12 0.00 37.02 1.73
1952 5756 6.591834 GCATAGATAGCATGGTTCGAAATAGT 59.408 38.462 1.12 0.00 0.00 2.12
1953 5757 7.118390 GCATAGATAGCATGGTTCGAAATAGTT 59.882 37.037 1.12 0.00 0.00 2.24
2319 6933 2.364324 TGACTATTCTACCGTGCCATCC 59.636 50.000 0.00 0.00 0.00 3.51
2331 6945 0.550914 TGCCATCCATCCCTGGTTAC 59.449 55.000 0.00 0.00 43.61 2.50
2349 6963 0.322546 ACGGTTGGATCAAGGCTTCC 60.323 55.000 0.00 0.00 0.00 3.46
2400 7014 4.527038 TCGAGTCTCCAGGTGAATAAGTTT 59.473 41.667 0.00 0.00 0.00 2.66
2404 7018 2.420022 CTCCAGGTGAATAAGTTTGCGG 59.580 50.000 0.00 0.00 0.00 5.69
2443 7066 5.239525 GGTGTGATGCTTCTTACACTTTCTT 59.760 40.000 17.34 0.00 42.19 2.52
2473 7100 7.551262 CCATACTGAGTAGGTAGATGCTACTAG 59.449 44.444 3.46 0.00 34.47 2.57
2478 7105 4.828387 AGTAGGTAGATGCTACTAGTTGCC 59.172 45.833 23.56 11.27 32.78 4.52
2481 7108 4.656112 AGGTAGATGCTACTAGTTGCCATT 59.344 41.667 23.56 12.57 0.00 3.16
2638 7370 8.564574 TGTAGTTCTGAATACAATTGGTTTCAC 58.435 33.333 16.75 10.41 0.00 3.18
2641 7373 6.012658 TCTGAATACAATTGGTTTCACAGC 57.987 37.500 16.75 0.00 0.00 4.40
2652 7384 5.957842 TGGTTTCACAGCGAGATATTTTT 57.042 34.783 0.00 0.00 0.00 1.94
2739 7488 7.831690 TGGTATTCTCATTTTGTTGGTGCTATA 59.168 33.333 0.00 0.00 0.00 1.31
2884 7762 2.803133 CGGAGTTCAGCAGTTTCACAGA 60.803 50.000 0.00 0.00 0.00 3.41
2924 7805 0.031716 AGCAGGAGGGTATCAGCTCA 60.032 55.000 0.00 0.00 36.44 4.26
2939 7820 3.008266 TCAGCTCACCATCAATCAACTCA 59.992 43.478 0.00 0.00 0.00 3.41
3032 7913 0.471780 TCTGTGGGAAGCTCACTGGA 60.472 55.000 9.91 4.47 36.21 3.86
3151 8032 4.373116 GACCGGCGAGTGGCAAGA 62.373 66.667 9.30 0.00 46.16 3.02
3155 8036 2.260434 GGCGAGTGGCAAGACGTA 59.740 61.111 0.00 0.00 46.16 3.57
3185 8066 2.746362 CAAGACATGGAAGAGGCTTGAC 59.254 50.000 1.90 0.00 35.89 3.18
3264 8622 5.235186 GGTAAGACACTCACATATGCATGAC 59.765 44.000 10.16 0.00 35.96 3.06
3265 8623 4.476628 AGACACTCACATATGCATGACA 57.523 40.909 10.16 0.00 35.96 3.58
3266 8624 4.439968 AGACACTCACATATGCATGACAG 58.560 43.478 10.16 0.57 35.96 3.51
3267 8625 2.941064 ACACTCACATATGCATGACAGC 59.059 45.455 10.16 0.00 35.96 4.40
3341 8841 6.921412 TGGATGGATAATAAATGGTCCACTT 58.079 36.000 0.00 0.00 43.02 3.16
3536 9202 1.610038 CATCATGTGTGCTGTTGGTGT 59.390 47.619 0.00 0.00 0.00 4.16
3598 9272 5.699915 ACAGATAGTACGCGACATGTATACT 59.300 40.000 15.93 10.95 0.00 2.12
3618 9292 4.877282 ACTCAAGTTCTCAGAGTTGTAGC 58.123 43.478 0.00 0.00 39.45 3.58
3706 9380 1.290203 CAAATGGTCTCGGATGTCGG 58.710 55.000 0.00 0.00 39.77 4.79
3707 9381 1.134818 CAAATGGTCTCGGATGTCGGA 60.135 52.381 0.00 0.00 39.77 4.55
3710 9384 0.611062 TGGTCTCGGATGTCGGAAGT 60.611 55.000 0.00 0.00 39.77 3.01
3771 9445 9.905713 TTCTCTCATAAGTTTATTACCTGCAAT 57.094 29.630 0.00 0.00 0.00 3.56
3777 9451 5.897377 AGTTTATTACCTGCAATGGTGTC 57.103 39.130 7.87 0.00 41.05 3.67
3779 9453 5.415701 AGTTTATTACCTGCAATGGTGTCTG 59.584 40.000 7.87 0.00 41.05 3.51
3848 9523 3.432378 ACGTAGATCTCACCTCCACTTT 58.568 45.455 0.00 0.00 0.00 2.66
3866 9541 4.487412 GCCGCCAGATGCAGCAAC 62.487 66.667 4.07 0.00 43.13 4.17
3894 9569 1.104577 TTGGACGCAAACTGAACCCC 61.105 55.000 0.00 0.00 0.00 4.95
3906 9581 1.756538 CTGAACCCCAATGCATTACCC 59.243 52.381 12.53 0.00 0.00 3.69
3965 9640 6.863645 TCTTCAGTAAGTTCGAATTCAGACAG 59.136 38.462 0.00 0.00 34.13 3.51
4013 9688 1.467920 GGGAGAAACTTGGAGCCATG 58.532 55.000 1.24 1.24 0.00 3.66
4014 9689 1.004745 GGGAGAAACTTGGAGCCATGA 59.995 52.381 9.14 0.00 0.00 3.07
4043 9718 0.400213 CTGTAGGCCAACCAGGAACA 59.600 55.000 5.01 0.00 41.22 3.18
4060 9735 0.034896 ACACTGGCGTCTAGGGTTTG 59.965 55.000 0.00 0.00 0.00 2.93
4083 9759 2.092429 ACCCAATGCGTAGGTGATGATT 60.092 45.455 0.00 0.00 30.97 2.57
4109 9785 5.338381 CCAAGTCTCTGGAATAGTGGCTTTA 60.338 44.000 0.00 0.00 40.80 1.85
4237 9963 1.688735 CCTGTGGAGTTGAGTCTGTCA 59.311 52.381 0.00 0.00 0.00 3.58
4266 9993 2.615912 GACACCTCAAATGGCTCTATGC 59.384 50.000 0.00 0.00 41.94 3.14
4270 9997 2.484417 CCTCAAATGGCTCTATGCGAGT 60.484 50.000 0.00 0.00 44.05 4.18
4278 10005 3.188460 TGGCTCTATGCGAGTTTGTTTTC 59.812 43.478 0.00 0.00 44.05 2.29
4282 10009 5.340667 GCTCTATGCGAGTTTGTTTTCTTTG 59.659 40.000 0.00 0.00 41.98 2.77
4291 10018 6.508404 CGAGTTTGTTTTCTTTGCAAATCAGG 60.508 38.462 13.23 0.66 35.08 3.86
4295 10022 6.463995 TGTTTTCTTTGCAAATCAGGTACT 57.536 33.333 13.23 0.00 43.88 2.73
4296 10023 7.575414 TGTTTTCTTTGCAAATCAGGTACTA 57.425 32.000 13.23 0.00 36.02 1.82
4297 10024 7.648142 TGTTTTCTTTGCAAATCAGGTACTAG 58.352 34.615 13.23 0.00 36.02 2.57
4309 10036 5.939764 TCAGGTACTAGCACATTTCTCAT 57.060 39.130 0.00 0.00 36.02 2.90
4313 10040 4.034510 GGTACTAGCACATTTCTCATGCAC 59.965 45.833 0.00 0.00 41.97 4.57
4322 10049 3.631145 TTTCTCATGCACAAGTTCTGC 57.369 42.857 0.00 0.00 35.03 4.26
4329 10056 4.280425 TCATGCACAAGTTCTGCCATTTTA 59.720 37.500 0.33 0.00 33.36 1.52
4332 10059 4.099266 TGCACAAGTTCTGCCATTTTAGTT 59.901 37.500 0.33 0.00 33.36 2.24
4333 10060 5.049828 GCACAAGTTCTGCCATTTTAGTTT 58.950 37.500 0.00 0.00 0.00 2.66
4368 10095 2.106566 CAGCTCCTATGTGTCCTCAGT 58.893 52.381 0.00 0.00 0.00 3.41
4369 10096 2.100584 CAGCTCCTATGTGTCCTCAGTC 59.899 54.545 0.00 0.00 0.00 3.51
4370 10097 1.066303 GCTCCTATGTGTCCTCAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
4395 10122 1.470098 GCTTGCATCATTGTTCGGTCT 59.530 47.619 0.00 0.00 0.00 3.85
4410 10137 2.233922 TCGGTCTTTTGGTCCTGAGATC 59.766 50.000 0.00 0.00 0.00 2.75
4459 10188 8.454106 CCCTCAGTTTTATTATTTCTCTGTGTG 58.546 37.037 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.323257 CCGAGTCCCTACCTGTTTGTTTAT 60.323 45.833 0.00 0.00 0.00 1.40
4 5 2.224450 CCGAGTCCCTACCTGTTTGTTT 60.224 50.000 0.00 0.00 0.00 2.83
5 6 1.346722 CCGAGTCCCTACCTGTTTGTT 59.653 52.381 0.00 0.00 0.00 2.83
6 7 0.974383 CCGAGTCCCTACCTGTTTGT 59.026 55.000 0.00 0.00 0.00 2.83
8 9 0.115745 TCCCGAGTCCCTACCTGTTT 59.884 55.000 0.00 0.00 0.00 2.83
9 10 0.614134 GTCCCGAGTCCCTACCTGTT 60.614 60.000 0.00 0.00 0.00 3.16
10 11 1.000107 GTCCCGAGTCCCTACCTGT 60.000 63.158 0.00 0.00 0.00 4.00
16 17 3.684408 ACTTATAAGTCCCGAGTCCCT 57.316 47.619 12.50 0.00 32.86 4.20
27 28 7.081857 TGGTTGTTTACAGGGACTTATAAGT 57.918 36.000 18.05 18.05 43.16 2.24
28 29 7.611213 CTGGTTGTTTACAGGGACTTATAAG 57.389 40.000 11.05 11.05 34.60 1.73
39 40 4.969484 AGTCCTTACCTGGTTGTTTACAG 58.031 43.478 3.84 0.00 34.54 2.74
40 41 5.376756 AAGTCCTTACCTGGTTGTTTACA 57.623 39.130 3.84 0.00 0.00 2.41
41 42 7.118825 GTCATAAGTCCTTACCTGGTTGTTTAC 59.881 40.741 3.84 0.00 0.00 2.01
42 43 7.016858 AGTCATAAGTCCTTACCTGGTTGTTTA 59.983 37.037 3.84 0.00 0.00 2.01
43 44 6.002082 GTCATAAGTCCTTACCTGGTTGTTT 58.998 40.000 3.84 0.00 0.00 2.83
45 46 4.844655 AGTCATAAGTCCTTACCTGGTTGT 59.155 41.667 3.84 0.00 0.00 3.32
46 47 5.422214 AGTCATAAGTCCTTACCTGGTTG 57.578 43.478 3.84 0.00 0.00 3.77
47 48 7.750947 ATAAGTCATAAGTCCTTACCTGGTT 57.249 36.000 3.84 0.00 0.00 3.67
48 49 8.849543 TTATAAGTCATAAGTCCTTACCTGGT 57.150 34.615 4.05 4.05 0.00 4.00
55 56 9.628500 GTCCCAATTTATAAGTCATAAGTCCTT 57.372 33.333 0.00 0.00 30.75 3.36
56 57 9.004231 AGTCCCAATTTATAAGTCATAAGTCCT 57.996 33.333 0.00 0.00 30.75 3.85
91 92 7.392393 GCCTTGTTTGTTTAATAAGTCCTAGGA 59.608 37.037 7.62 7.62 34.24 2.94
92 93 7.362660 GGCCTTGTTTGTTTAATAAGTCCTAGG 60.363 40.741 0.82 0.82 32.24 3.02
93 94 7.393515 AGGCCTTGTTTGTTTAATAAGTCCTAG 59.606 37.037 0.00 0.00 40.27 3.02
94 95 7.235804 AGGCCTTGTTTGTTTAATAAGTCCTA 58.764 34.615 0.00 0.00 40.27 2.94
95 96 6.075315 AGGCCTTGTTTGTTTAATAAGTCCT 58.925 36.000 0.00 0.00 38.16 3.85
96 97 6.340962 AGGCCTTGTTTGTTTAATAAGTCC 57.659 37.500 0.00 0.00 34.35 3.85
97 98 9.923143 AATTAGGCCTTGTTTGTTTAATAAGTC 57.077 29.630 12.58 0.00 34.24 3.01
98 99 9.923143 GAATTAGGCCTTGTTTGTTTAATAAGT 57.077 29.630 12.58 0.00 34.24 2.24
101 102 9.303116 TCAGAATTAGGCCTTGTTTGTTTAATA 57.697 29.630 12.58 0.00 0.00 0.98
102 103 8.189119 TCAGAATTAGGCCTTGTTTGTTTAAT 57.811 30.769 12.58 0.00 0.00 1.40
103 104 7.589958 TCAGAATTAGGCCTTGTTTGTTTAA 57.410 32.000 12.58 0.00 0.00 1.52
104 105 7.589958 TTCAGAATTAGGCCTTGTTTGTTTA 57.410 32.000 12.58 0.00 0.00 2.01
105 106 6.478512 TTCAGAATTAGGCCTTGTTTGTTT 57.521 33.333 12.58 0.00 0.00 2.83
106 107 6.670695 ATTCAGAATTAGGCCTTGTTTGTT 57.329 33.333 12.58 0.00 0.00 2.83
107 108 6.458210 CAATTCAGAATTAGGCCTTGTTTGT 58.542 36.000 12.58 0.00 0.00 2.83
108 109 5.870978 CCAATTCAGAATTAGGCCTTGTTTG 59.129 40.000 12.58 11.01 0.00 2.93
109 110 5.569428 GCCAATTCAGAATTAGGCCTTGTTT 60.569 40.000 24.78 1.68 38.24 2.83
110 111 4.081476 GCCAATTCAGAATTAGGCCTTGTT 60.081 41.667 24.78 6.25 38.24 2.83
111 112 3.448660 GCCAATTCAGAATTAGGCCTTGT 59.551 43.478 24.78 0.00 38.24 3.16
113 114 3.711863 TGCCAATTCAGAATTAGGCCTT 58.288 40.909 28.39 0.00 40.86 4.35
114 115 3.386932 TGCCAATTCAGAATTAGGCCT 57.613 42.857 28.39 11.78 40.86 5.19
118 119 6.135290 TCGGATTTGCCAATTCAGAATTAG 57.865 37.500 8.12 2.52 35.94 1.73
119 120 6.713762 ATCGGATTTGCCAATTCAGAATTA 57.286 33.333 8.12 0.00 35.94 1.40
120 121 5.603170 ATCGGATTTGCCAATTCAGAATT 57.397 34.783 2.20 2.20 35.94 2.17
121 122 5.127519 TGAATCGGATTTGCCAATTCAGAAT 59.872 36.000 4.47 0.00 35.94 2.40
122 123 4.462132 TGAATCGGATTTGCCAATTCAGAA 59.538 37.500 4.47 0.00 35.94 3.02
124 125 4.374843 TGAATCGGATTTGCCAATTCAG 57.625 40.909 4.47 0.00 35.94 3.02
125 126 4.797800 TTGAATCGGATTTGCCAATTCA 57.202 36.364 4.47 0.00 35.94 2.57
126 127 6.667007 ATTTTGAATCGGATTTGCCAATTC 57.333 33.333 4.47 0.00 35.94 2.17
127 128 7.555087 TCTATTTTGAATCGGATTTGCCAATT 58.445 30.769 4.47 0.00 35.94 2.32
129 130 6.522625 TCTATTTTGAATCGGATTTGCCAA 57.477 33.333 4.47 2.27 35.94 4.52
130 131 6.522625 TTCTATTTTGAATCGGATTTGCCA 57.477 33.333 4.47 0.00 35.94 4.92
131 132 5.460091 GCTTCTATTTTGAATCGGATTTGCC 59.540 40.000 4.47 0.00 0.00 4.52
133 134 5.682862 CGGCTTCTATTTTGAATCGGATTTG 59.317 40.000 4.47 0.00 0.00 2.32
134 135 5.221048 CCGGCTTCTATTTTGAATCGGATTT 60.221 40.000 4.47 0.00 41.06 2.17
135 136 4.275936 CCGGCTTCTATTTTGAATCGGATT 59.724 41.667 2.19 2.19 41.06 3.01
137 138 3.202906 CCGGCTTCTATTTTGAATCGGA 58.797 45.455 11.05 0.00 41.06 4.55
138 139 2.290641 CCCGGCTTCTATTTTGAATCGG 59.709 50.000 0.00 0.00 39.74 4.18
140 141 2.034685 GCCCCGGCTTCTATTTTGAATC 59.965 50.000 0.00 0.00 38.26 2.52
141 142 2.031870 GCCCCGGCTTCTATTTTGAAT 58.968 47.619 0.00 0.00 38.26 2.57
143 144 0.329931 TGCCCCGGCTTCTATTTTGA 59.670 50.000 7.35 0.00 42.51 2.69
144 145 1.134946 CTTGCCCCGGCTTCTATTTTG 59.865 52.381 7.35 0.00 42.51 2.44
145 146 1.005450 TCTTGCCCCGGCTTCTATTTT 59.995 47.619 7.35 0.00 42.51 1.82
146 147 0.623723 TCTTGCCCCGGCTTCTATTT 59.376 50.000 7.35 0.00 42.51 1.40
148 149 1.527370 GTCTTGCCCCGGCTTCTAT 59.473 57.895 7.35 0.00 42.51 1.98
149 150 2.987125 GTCTTGCCCCGGCTTCTA 59.013 61.111 7.35 0.00 42.51 2.10
150 151 4.394712 CGTCTTGCCCCGGCTTCT 62.395 66.667 7.35 0.00 42.51 2.85
152 153 1.906105 TATTCGTCTTGCCCCGGCTT 61.906 55.000 7.35 0.00 42.51 4.35
153 154 1.696097 ATATTCGTCTTGCCCCGGCT 61.696 55.000 7.35 0.00 42.51 5.52
155 156 1.507141 GCATATTCGTCTTGCCCCGG 61.507 60.000 0.00 0.00 0.00 5.73
156 157 1.831389 CGCATATTCGTCTTGCCCCG 61.831 60.000 0.00 0.00 32.76 5.73
157 158 0.531974 TCGCATATTCGTCTTGCCCC 60.532 55.000 0.00 0.00 32.76 5.80
158 159 0.582005 GTCGCATATTCGTCTTGCCC 59.418 55.000 0.00 0.00 32.76 5.36
160 161 0.229753 CCGTCGCATATTCGTCTTGC 59.770 55.000 0.00 0.00 0.00 4.01
161 162 0.229753 GCCGTCGCATATTCGTCTTG 59.770 55.000 0.00 0.00 34.03 3.02
162 163 0.179121 TGCCGTCGCATATTCGTCTT 60.179 50.000 0.00 0.00 41.12 3.01
163 164 0.595053 CTGCCGTCGCATATTCGTCT 60.595 55.000 0.00 0.00 46.11 4.18
164 165 1.548973 CCTGCCGTCGCATATTCGTC 61.549 60.000 0.00 0.00 46.11 4.20
165 166 1.591594 CCTGCCGTCGCATATTCGT 60.592 57.895 0.00 0.00 46.11 3.85
167 168 0.792640 CATCCTGCCGTCGCATATTC 59.207 55.000 0.00 0.00 46.11 1.75
168 169 0.603707 CCATCCTGCCGTCGCATATT 60.604 55.000 0.00 0.00 46.11 1.28
169 170 1.004560 CCATCCTGCCGTCGCATAT 60.005 57.895 0.00 0.00 46.11 1.78
172 173 1.681486 TATTCCATCCTGCCGTCGCA 61.681 55.000 0.00 0.00 44.78 5.10
175 176 1.202698 AGCTTATTCCATCCTGCCGTC 60.203 52.381 0.00 0.00 0.00 4.79
176 177 0.839946 AGCTTATTCCATCCTGCCGT 59.160 50.000 0.00 0.00 0.00 5.68
177 178 1.233019 CAGCTTATTCCATCCTGCCG 58.767 55.000 0.00 0.00 0.00 5.69
178 179 0.957362 GCAGCTTATTCCATCCTGCC 59.043 55.000 0.00 0.00 42.17 4.85
179 180 0.590195 CGCAGCTTATTCCATCCTGC 59.410 55.000 0.00 0.00 43.95 4.85
198 199 0.517316 AAACTCCGCGTCTGAAATGC 59.483 50.000 4.92 0.00 36.48 3.56
199 200 2.574322 CAAAACTCCGCGTCTGAAATG 58.426 47.619 4.92 0.00 0.00 2.32
202 203 1.503818 GCCAAAACTCCGCGTCTGAA 61.504 55.000 4.92 0.00 0.00 3.02
203 204 1.959226 GCCAAAACTCCGCGTCTGA 60.959 57.895 4.92 0.00 0.00 3.27
204 205 1.901650 GAGCCAAAACTCCGCGTCTG 61.902 60.000 4.92 0.00 0.00 3.51
205 206 1.668151 GAGCCAAAACTCCGCGTCT 60.668 57.895 4.92 0.00 0.00 4.18
206 207 2.677979 GGAGCCAAAACTCCGCGTC 61.678 63.158 4.92 0.00 46.52 5.19
207 208 2.668550 GGAGCCAAAACTCCGCGT 60.669 61.111 4.92 0.00 46.52 6.01
212 213 3.062466 GCCCGGGAGCCAAAACTC 61.062 66.667 29.31 0.00 35.86 3.01
215 216 2.837031 GATGAGCCCGGGAGCCAAAA 62.837 60.000 29.31 1.13 0.00 2.44
216 217 3.338250 ATGAGCCCGGGAGCCAAA 61.338 61.111 29.31 2.41 0.00 3.28
217 218 3.797353 GATGAGCCCGGGAGCCAA 61.797 66.667 29.31 4.14 0.00 4.52
219 220 4.247380 CAGATGAGCCCGGGAGCC 62.247 72.222 29.31 12.80 0.00 4.70
221 222 1.742768 GTACAGATGAGCCCGGGAG 59.257 63.158 29.31 6.40 0.00 4.30
223 224 2.808206 GGGTACAGATGAGCCCGGG 61.808 68.421 19.09 19.09 0.00 5.73
224 225 1.410850 ATGGGTACAGATGAGCCCGG 61.411 60.000 0.00 0.00 43.89 5.73
225 226 0.250038 CATGGGTACAGATGAGCCCG 60.250 60.000 0.00 0.00 43.89 6.13
226 227 0.536006 GCATGGGTACAGATGAGCCC 60.536 60.000 7.38 8.73 41.42 5.19
227 228 0.471617 AGCATGGGTACAGATGAGCC 59.528 55.000 7.38 0.00 34.91 4.70
228 229 2.338577 AAGCATGGGTACAGATGAGC 57.661 50.000 7.38 0.00 0.00 4.26
229 230 4.944619 TCTAAGCATGGGTACAGATGAG 57.055 45.455 7.38 0.00 0.00 2.90
230 231 5.692115 TTTCTAAGCATGGGTACAGATGA 57.308 39.130 7.38 0.00 0.00 2.92
231 232 6.757897 TTTTTCTAAGCATGGGTACAGATG 57.242 37.500 0.00 0.00 0.00 2.90
297 298 7.093552 CCCATCAAATTATCTACCACCACAAAA 60.094 37.037 0.00 0.00 0.00 2.44
299 300 5.890985 CCCATCAAATTATCTACCACCACAA 59.109 40.000 0.00 0.00 0.00 3.33
301 302 5.299279 CACCCATCAAATTATCTACCACCAC 59.701 44.000 0.00 0.00 0.00 4.16
303 304 5.690865 TCACCCATCAAATTATCTACCACC 58.309 41.667 0.00 0.00 0.00 4.61
304 305 5.765182 CCTCACCCATCAAATTATCTACCAC 59.235 44.000 0.00 0.00 0.00 4.16
306 307 5.765182 CACCTCACCCATCAAATTATCTACC 59.235 44.000 0.00 0.00 0.00 3.18
308 309 5.376625 GCACCTCACCCATCAAATTATCTA 58.623 41.667 0.00 0.00 0.00 1.98
309 310 4.210331 GCACCTCACCCATCAAATTATCT 58.790 43.478 0.00 0.00 0.00 1.98
310 311 3.003689 CGCACCTCACCCATCAAATTATC 59.996 47.826 0.00 0.00 0.00 1.75
311 312 2.951642 CGCACCTCACCCATCAAATTAT 59.048 45.455 0.00 0.00 0.00 1.28
313 314 1.176527 CGCACCTCACCCATCAAATT 58.823 50.000 0.00 0.00 0.00 1.82
314 315 1.315257 GCGCACCTCACCCATCAAAT 61.315 55.000 0.30 0.00 0.00 2.32
316 317 2.359850 GCGCACCTCACCCATCAA 60.360 61.111 0.30 0.00 0.00 2.57
317 318 4.408821 GGCGCACCTCACCCATCA 62.409 66.667 10.83 0.00 0.00 3.07
325 326 1.215382 GATTTTTGGGGCGCACCTC 59.785 57.895 32.18 15.41 40.03 3.85
326 327 1.118356 TTGATTTTTGGGGCGCACCT 61.118 50.000 32.18 9.19 40.03 4.00
327 328 0.948623 GTTGATTTTTGGGGCGCACC 60.949 55.000 25.59 25.59 39.11 5.01
332 333 4.640364 TCAAATGAGTTGATTTTTGGGGC 58.360 39.130 0.00 0.00 41.47 5.80
333 334 4.692155 GCTCAAATGAGTTGATTTTTGGGG 59.308 41.667 11.77 0.00 45.27 4.96
334 335 5.299148 TGCTCAAATGAGTTGATTTTTGGG 58.701 37.500 11.77 0.00 45.27 4.12
336 337 7.473027 AGTTGCTCAAATGAGTTGATTTTTG 57.527 32.000 11.77 0.00 45.27 2.44
338 339 7.383300 GCTTAGTTGCTCAAATGAGTTGATTTT 59.617 33.333 11.77 0.00 45.27 1.82
339 340 6.865205 GCTTAGTTGCTCAAATGAGTTGATTT 59.135 34.615 11.77 0.00 45.27 2.17
340 341 6.016024 TGCTTAGTTGCTCAAATGAGTTGATT 60.016 34.615 11.77 0.00 45.27 2.57
341 342 5.474532 TGCTTAGTTGCTCAAATGAGTTGAT 59.525 36.000 11.77 0.23 45.27 2.57
343 344 5.112220 TGCTTAGTTGCTCAAATGAGTTG 57.888 39.130 11.77 0.00 43.85 3.16
344 345 4.320788 GCTGCTTAGTTGCTCAAATGAGTT 60.321 41.667 11.77 0.00 43.85 3.01
345 346 3.190118 GCTGCTTAGTTGCTCAAATGAGT 59.810 43.478 11.77 0.00 43.85 3.41
346 347 3.439476 AGCTGCTTAGTTGCTCAAATGAG 59.561 43.478 6.05 6.05 44.75 2.90
347 348 3.415212 AGCTGCTTAGTTGCTCAAATGA 58.585 40.909 0.00 0.00 30.41 2.57
348 349 3.844577 AGCTGCTTAGTTGCTCAAATG 57.155 42.857 0.00 0.00 30.41 2.32
354 355 0.108424 CCGAGAGCTGCTTAGTTGCT 60.108 55.000 2.53 0.00 40.02 3.91
355 356 1.700600 GCCGAGAGCTGCTTAGTTGC 61.701 60.000 2.53 0.00 38.99 4.17
356 357 0.390340 TGCCGAGAGCTGCTTAGTTG 60.390 55.000 2.53 0.00 44.23 3.16
357 358 0.321671 TTGCCGAGAGCTGCTTAGTT 59.678 50.000 2.53 0.00 44.23 2.24
359 360 1.442769 TTTTGCCGAGAGCTGCTTAG 58.557 50.000 2.53 0.00 44.23 2.18
360 361 1.890876 TTTTTGCCGAGAGCTGCTTA 58.109 45.000 2.53 0.00 44.23 3.09
361 362 2.719376 TTTTTGCCGAGAGCTGCTT 58.281 47.368 2.53 0.00 44.23 3.91
362 363 4.481195 TTTTTGCCGAGAGCTGCT 57.519 50.000 0.00 0.00 44.23 4.24
376 377 7.654022 TTACAGACCCTGATTTTGTCTTTTT 57.346 32.000 0.45 0.00 37.25 1.94
377 378 7.654022 TTTACAGACCCTGATTTTGTCTTTT 57.346 32.000 0.45 0.00 37.25 2.27
378 379 7.654022 TTTTACAGACCCTGATTTTGTCTTT 57.346 32.000 0.45 0.00 37.25 2.52
379 380 7.654022 TTTTTACAGACCCTGATTTTGTCTT 57.346 32.000 0.45 0.00 37.25 3.01
380 381 7.287696 ACATTTTTACAGACCCTGATTTTGTCT 59.712 33.333 0.45 0.00 39.86 3.41
381 382 7.382218 CACATTTTTACAGACCCTGATTTTGTC 59.618 37.037 0.45 0.00 35.18 3.18
383 384 7.209475 ACACATTTTTACAGACCCTGATTTTG 58.791 34.615 0.45 0.00 35.18 2.44
384 385 7.360113 ACACATTTTTACAGACCCTGATTTT 57.640 32.000 0.45 0.00 35.18 1.82
385 386 6.976934 ACACATTTTTACAGACCCTGATTT 57.023 33.333 0.45 0.00 35.18 2.17
388 389 5.310451 GGTACACATTTTTACAGACCCTGA 58.690 41.667 0.45 0.00 35.18 3.86
390 391 4.202388 ACGGTACACATTTTTACAGACCCT 60.202 41.667 0.00 0.00 0.00 4.34
391 392 4.067192 ACGGTACACATTTTTACAGACCC 58.933 43.478 0.00 0.00 0.00 4.46
392 393 5.236911 TGAACGGTACACATTTTTACAGACC 59.763 40.000 0.00 0.00 0.00 3.85
393 394 6.131389 GTGAACGGTACACATTTTTACAGAC 58.869 40.000 0.00 0.00 38.05 3.51
396 397 4.552378 GCGTGAACGGTACACATTTTTACA 60.552 41.667 4.84 0.00 40.23 2.41
398 399 3.558829 TGCGTGAACGGTACACATTTTTA 59.441 39.130 4.84 0.00 40.23 1.52
399 400 2.355132 TGCGTGAACGGTACACATTTTT 59.645 40.909 4.84 0.00 40.23 1.94
400 401 1.941294 TGCGTGAACGGTACACATTTT 59.059 42.857 4.84 0.00 40.23 1.82
401 402 1.262151 GTGCGTGAACGGTACACATTT 59.738 47.619 4.84 0.00 40.23 2.32
402 403 0.863144 GTGCGTGAACGGTACACATT 59.137 50.000 4.84 0.00 40.23 2.71
403 404 0.032952 AGTGCGTGAACGGTACACAT 59.967 50.000 12.42 0.00 40.23 3.21
404 405 0.872451 CAGTGCGTGAACGGTACACA 60.872 55.000 12.42 0.00 40.23 3.72
406 407 0.179105 AACAGTGCGTGAACGGTACA 60.179 50.000 4.84 0.00 40.23 2.90
407 408 0.932399 AAACAGTGCGTGAACGGTAC 59.068 50.000 4.84 0.00 40.23 3.34
408 409 1.328069 CAAAACAGTGCGTGAACGGTA 59.672 47.619 4.84 0.00 40.23 4.02
410 411 0.375454 TCAAAACAGTGCGTGAACGG 59.625 50.000 4.84 0.00 40.23 4.44
411 412 1.452717 GTCAAAACAGTGCGTGAACG 58.547 50.000 0.00 0.00 43.27 3.95
412 413 1.533129 GGGTCAAAACAGTGCGTGAAC 60.533 52.381 0.00 0.00 0.00 3.18
414 415 1.433053 CGGGTCAAAACAGTGCGTGA 61.433 55.000 0.00 0.00 0.00 4.35
415 416 1.010125 CGGGTCAAAACAGTGCGTG 60.010 57.895 0.00 0.00 0.00 5.34
416 417 0.534203 ATCGGGTCAAAACAGTGCGT 60.534 50.000 0.00 0.00 0.00 5.24
417 418 0.591170 AATCGGGTCAAAACAGTGCG 59.409 50.000 0.00 0.00 0.00 5.34
418 419 2.223711 ACAAATCGGGTCAAAACAGTGC 60.224 45.455 0.00 0.00 0.00 4.40
421 422 4.568152 AAGACAAATCGGGTCAAAACAG 57.432 40.909 0.00 0.00 37.74 3.16
422 423 4.993029 AAAGACAAATCGGGTCAAAACA 57.007 36.364 0.00 0.00 37.74 2.83
445 446 1.135170 CATCTGAGCAGCTCTCGACAA 60.135 52.381 23.15 0.68 44.86 3.18
447 448 0.455410 ACATCTGAGCAGCTCTCGAC 59.545 55.000 23.15 0.00 44.86 4.20
448 449 1.133982 GAACATCTGAGCAGCTCTCGA 59.866 52.381 23.15 18.41 44.86 4.04
449 450 1.135170 TGAACATCTGAGCAGCTCTCG 60.135 52.381 23.15 13.93 44.86 4.04
450 451 2.669300 TGAACATCTGAGCAGCTCTC 57.331 50.000 23.15 11.54 42.23 3.20
452 453 3.688185 TCATTTGAACATCTGAGCAGCTC 59.312 43.478 16.21 16.21 0.00 4.09
453 454 3.682696 TCATTTGAACATCTGAGCAGCT 58.317 40.909 0.00 0.00 0.00 4.24
454 455 3.439476 ACTCATTTGAACATCTGAGCAGC 59.561 43.478 11.41 0.00 38.94 5.25
455 456 5.180680 TCAACTCATTTGAACATCTGAGCAG 59.819 40.000 11.41 0.00 41.51 4.24
457 458 5.618056 TCAACTCATTTGAACATCTGAGC 57.382 39.130 11.41 0.00 41.51 4.26
467 468 5.984926 GCACCTCAAAATTCAACTCATTTGA 59.015 36.000 0.00 0.00 42.83 2.69
468 469 5.754406 TGCACCTCAAAATTCAACTCATTTG 59.246 36.000 0.00 0.00 36.42 2.32
470 471 5.291971 GTGCACCTCAAAATTCAACTCATT 58.708 37.500 5.22 0.00 0.00 2.57
471 472 4.262164 GGTGCACCTCAAAATTCAACTCAT 60.262 41.667 29.12 0.00 0.00 2.90
472 473 3.068024 GGTGCACCTCAAAATTCAACTCA 59.932 43.478 29.12 0.00 0.00 3.41
473 474 3.319122 AGGTGCACCTCAAAATTCAACTC 59.681 43.478 33.20 1.19 44.77 3.01
487 488 1.500512 TTTGACGCGTAAGGTGCACC 61.501 55.000 29.22 29.22 38.28 5.01
488 489 0.515564 ATTTGACGCGTAAGGTGCAC 59.484 50.000 13.97 8.80 38.28 4.57
490 491 3.308866 AGATAATTTGACGCGTAAGGTGC 59.691 43.478 13.97 0.00 38.28 5.01
493 494 5.045215 TGGTAGATAATTTGACGCGTAAGG 58.955 41.667 13.97 0.00 38.28 2.69
494 495 5.051240 GGTGGTAGATAATTTGACGCGTAAG 60.051 44.000 13.97 0.00 43.44 2.34
495 496 4.805192 GGTGGTAGATAATTTGACGCGTAA 59.195 41.667 13.97 0.00 0.00 3.18
498 499 3.191669 TGGTGGTAGATAATTTGACGCG 58.808 45.455 3.53 3.53 0.00 6.01
499 500 6.854496 TTATGGTGGTAGATAATTTGACGC 57.146 37.500 0.00 0.00 0.00 5.19
500 501 9.716507 CTTTTTATGGTGGTAGATAATTTGACG 57.283 33.333 0.00 0.00 0.00 4.35
508 509 9.983024 TTCCAAATCTTTTTATGGTGGTAGATA 57.017 29.630 0.00 0.00 34.50 1.98
509 510 8.893563 TTCCAAATCTTTTTATGGTGGTAGAT 57.106 30.769 0.00 0.00 34.50 1.98
510 511 8.893563 ATTCCAAATCTTTTTATGGTGGTAGA 57.106 30.769 0.00 0.00 34.50 2.59
511 512 9.942850 AAATTCCAAATCTTTTTATGGTGGTAG 57.057 29.630 0.00 0.00 34.50 3.18
568 569 1.346395 TCTGCTCCCGCTCAGTAAAAA 59.654 47.619 0.00 0.00 36.97 1.94
569 570 0.973632 TCTGCTCCCGCTCAGTAAAA 59.026 50.000 0.00 0.00 36.97 1.52
570 571 0.532573 CTCTGCTCCCGCTCAGTAAA 59.467 55.000 0.00 0.00 36.97 2.01
572 573 1.754621 CCTCTGCTCCCGCTCAGTA 60.755 63.158 0.00 0.00 36.97 2.74
573 574 3.073735 CCTCTGCTCCCGCTCAGT 61.074 66.667 0.00 0.00 36.97 3.41
574 575 2.757508 TCCTCTGCTCCCGCTCAG 60.758 66.667 0.00 0.00 36.97 3.35
575 576 2.757508 CTCCTCTGCTCCCGCTCA 60.758 66.667 0.00 0.00 36.97 4.26
576 577 4.219999 GCTCCTCTGCTCCCGCTC 62.220 72.222 0.00 0.00 36.97 5.03
593 594 2.608970 AATTCATCGTGGAGCCCGGG 62.609 60.000 19.09 19.09 0.00 5.73
594 595 0.105964 TAATTCATCGTGGAGCCCGG 59.894 55.000 0.00 0.00 0.00 5.73
595 596 2.069273 GATAATTCATCGTGGAGCCCG 58.931 52.381 0.00 0.00 0.00 6.13
605 606 4.410492 AGAAATGCGCCGATAATTCATC 57.590 40.909 4.18 0.00 0.00 2.92
609 610 4.900635 AGAAAGAAATGCGCCGATAATT 57.099 36.364 4.18 0.00 0.00 1.40
611 612 3.064820 GGAAGAAAGAAATGCGCCGATAA 59.935 43.478 4.18 0.00 0.00 1.75
612 613 2.612212 GGAAGAAAGAAATGCGCCGATA 59.388 45.455 4.18 0.00 0.00 2.92
613 614 1.401905 GGAAGAAAGAAATGCGCCGAT 59.598 47.619 4.18 0.00 0.00 4.18
614 615 0.802494 GGAAGAAAGAAATGCGCCGA 59.198 50.000 4.18 0.00 0.00 5.54
615 616 0.804989 AGGAAGAAAGAAATGCGCCG 59.195 50.000 4.18 0.00 0.00 6.46
616 617 3.245797 GAAAGGAAGAAAGAAATGCGCC 58.754 45.455 4.18 0.00 0.00 6.53
619 620 3.670523 GCACGAAAGGAAGAAAGAAATGC 59.329 43.478 0.00 0.00 0.00 3.56
620 621 4.676924 GTGCACGAAAGGAAGAAAGAAATG 59.323 41.667 0.00 0.00 0.00 2.32
625 626 1.266989 GGGTGCACGAAAGGAAGAAAG 59.733 52.381 11.45 0.00 0.00 2.62
626 627 1.314730 GGGTGCACGAAAGGAAGAAA 58.685 50.000 11.45 0.00 0.00 2.52
629 630 1.971695 GGGGGTGCACGAAAGGAAG 60.972 63.158 11.45 0.00 0.00 3.46
630 631 2.114411 GGGGGTGCACGAAAGGAA 59.886 61.111 11.45 0.00 0.00 3.36
650 3272 3.151022 GGGCAGACGGAGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
894 3531 0.240945 GTGGTTGCGGTGGATTTCTG 59.759 55.000 0.00 0.00 0.00 3.02
895 3532 0.179004 TGTGGTTGCGGTGGATTTCT 60.179 50.000 0.00 0.00 0.00 2.52
906 3543 2.989422 AAGTAGCGATTTGTGGTTGC 57.011 45.000 0.00 0.00 0.00 4.17
914 3551 0.727398 GCTGGCGAAAGTAGCGATTT 59.273 50.000 0.00 0.00 34.74 2.17
921 3558 1.601903 CACTGTTTGCTGGCGAAAGTA 59.398 47.619 0.00 0.00 0.00 2.24
928 3565 1.598701 GGGGATCACTGTTTGCTGGC 61.599 60.000 0.00 0.00 0.00 4.85
934 3571 1.364269 TAACCGGGGGATCACTGTTT 58.636 50.000 6.32 0.00 0.00 2.83
1041 3688 1.076632 GAGGGCGAGGAGAAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
1083 3730 1.675007 CCCTCTTCTTTCCCTTCCCT 58.325 55.000 0.00 0.00 0.00 4.20
1331 3985 1.573108 TAACAGAGCAGGGAAGAGGG 58.427 55.000 0.00 0.00 0.00 4.30
1502 5092 3.181472 GGGCATGGTCAGAATTTCCATTC 60.181 47.826 0.00 0.00 39.57 2.67
1505 5095 1.076841 TGGGCATGGTCAGAATTTCCA 59.923 47.619 0.00 0.00 35.64 3.53
1529 5119 1.078143 GAAAGCCCGGCAGATGAGT 60.078 57.895 13.15 0.00 0.00 3.41
1543 5137 7.805071 GTGGACAGACAATCAATTAACTGAAAG 59.195 37.037 0.00 0.00 42.29 2.62
1555 5149 1.728323 TCTGGGTGGACAGACAATCA 58.272 50.000 0.00 0.00 42.26 2.57
1569 5164 2.939103 GACCATTTCATCTTCGTCTGGG 59.061 50.000 0.00 0.00 0.00 4.45
1634 5247 4.335594 GGCGGCTACATTTGTATCTTTCTT 59.664 41.667 0.00 0.00 0.00 2.52
1635 5248 3.877508 GGCGGCTACATTTGTATCTTTCT 59.122 43.478 0.00 0.00 0.00 2.52
1714 5352 3.319755 CAGCATTGGAAACATCACCAAC 58.680 45.455 0.00 0.00 46.67 3.77
1731 5369 1.176527 GGGTTGCTAGATTTGCAGCA 58.823 50.000 0.00 0.00 45.72 4.41
1778 5575 1.693467 GTGTGCGTGTCGTAATCTCA 58.307 50.000 0.00 0.00 0.00 3.27
1798 5595 2.121786 CAAATTATCGCTGGCACATGC 58.878 47.619 0.00 0.00 38.20 4.06
1799 5596 3.110358 CACAAATTATCGCTGGCACATG 58.890 45.455 0.00 0.00 38.20 3.21
1800 5597 2.480073 GCACAAATTATCGCTGGCACAT 60.480 45.455 0.00 0.00 38.20 3.21
1806 5603 5.178252 AGCATAGTAGCACAAATTATCGCTG 59.822 40.000 5.84 0.00 35.93 5.18
1830 5627 6.206438 TCTGCACAATTACTATCACTGCAAAA 59.794 34.615 0.00 0.00 33.03 2.44
1842 5639 6.207417 AGCAAACTTATGTCTGCACAATTACT 59.793 34.615 9.47 0.00 35.64 2.24
1848 5645 4.337836 TGAAAGCAAACTTATGTCTGCACA 59.662 37.500 9.47 4.33 37.26 4.57
1849 5646 4.858935 TGAAAGCAAACTTATGTCTGCAC 58.141 39.130 9.47 2.13 37.26 4.57
1854 5651 6.963805 GCTATGACTGAAAGCAAACTTATGTC 59.036 38.462 0.00 0.00 37.60 3.06
1939 5743 6.971602 TGCACAATTTAACTATTTCGAACCA 58.028 32.000 0.00 0.00 0.00 3.67
2061 6675 0.749454 GAAGGTTCATGGCGATGGCT 60.749 55.000 8.98 0.00 39.81 4.75
2214 6828 6.040842 CCCCACCAACTTCCAGATTATAATTG 59.959 42.308 0.00 0.85 0.00 2.32
2319 6933 0.616371 TCCAACCGTAACCAGGGATG 59.384 55.000 0.00 0.00 33.53 3.51
2331 6945 1.032114 GGGAAGCCTTGATCCAACCG 61.032 60.000 0.00 0.00 37.46 4.44
2349 6963 0.401738 TCTGGAACCAAGCTTCCTGG 59.598 55.000 0.00 0.00 40.56 4.45
2430 7049 6.014584 TCAGTATGGCAGAAGAAAGTGTAAGA 60.015 38.462 0.00 0.00 36.16 2.10
2443 7066 4.790718 TCTACCTACTCAGTATGGCAGA 57.209 45.455 0.00 0.00 36.16 4.26
2478 7105 3.646611 TCTCATGTGTTGTTGCCAATG 57.353 42.857 0.00 0.00 32.11 2.82
2481 7108 3.220940 TCATTCTCATGTGTTGTTGCCA 58.779 40.909 0.00 0.00 0.00 4.92
2501 7128 6.091441 GCATAGTTAAGATGGTTCATCGGATC 59.909 42.308 2.71 0.00 44.67 3.36
2601 7325 3.076621 TCAGAACTACAATGCCAGCAAG 58.923 45.455 0.00 0.00 0.00 4.01
2638 7370 5.293569 ACTTAACCCGAAAAATATCTCGCTG 59.706 40.000 0.00 0.00 33.70 5.18
2718 7459 6.563422 GCATATAGCACCAACAAAATGAGAA 58.437 36.000 0.00 0.00 44.79 2.87
2924 7805 3.009916 AGAAGCCTGAGTTGATTGATGGT 59.990 43.478 0.00 0.00 0.00 3.55
2939 7820 2.514458 CCATGGTGGTAAAGAAGCCT 57.486 50.000 2.57 0.00 31.35 4.58
3185 8066 0.038618 TCGTGGTGAGGTGTTGATCG 60.039 55.000 0.00 0.00 0.00 3.69
3229 8110 4.777896 TGAGTGTCTTACCATTAGAGCCTT 59.222 41.667 0.00 0.00 0.00 4.35
3536 9202 3.431922 CGGACTCCGTAATAAGCTGAA 57.568 47.619 9.51 0.00 42.73 3.02
3598 9272 5.537300 AAGCTACAACTCTGAGAACTTGA 57.463 39.130 12.44 0.00 0.00 3.02
3639 9313 0.673644 CCGAATCCATGATACCCGCC 60.674 60.000 0.00 0.00 0.00 6.13
3641 9315 1.070134 ACACCGAATCCATGATACCCG 59.930 52.381 0.00 0.00 0.00 5.28
3645 9319 5.163311 ACTGAATCACACCGAATCCATGATA 60.163 40.000 0.00 0.00 29.93 2.15
3706 9380 8.589335 TTAGCATCGGTATTCTCATTAACTTC 57.411 34.615 0.00 0.00 0.00 3.01
3707 9381 8.993121 CATTAGCATCGGTATTCTCATTAACTT 58.007 33.333 0.00 0.00 0.00 2.66
3710 9384 6.090763 CGCATTAGCATCGGTATTCTCATTAA 59.909 38.462 0.00 0.00 42.27 1.40
3771 9445 3.958147 TCTACTCAACAGTTCAGACACCA 59.042 43.478 0.00 0.00 33.62 4.17
3777 9451 7.402640 GTTCTTGTTTCTACTCAACAGTTCAG 58.597 38.462 0.00 0.00 35.57 3.02
3779 9453 6.539103 AGGTTCTTGTTTCTACTCAACAGTTC 59.461 38.462 0.00 0.00 35.57 3.01
3866 9541 3.074412 AGTTTGCGTCCAACTTATCTGG 58.926 45.455 0.00 0.00 35.05 3.86
3894 9569 2.352651 CTGTCACTCGGGTAATGCATTG 59.647 50.000 22.27 6.42 0.00 2.82
3906 9581 1.068194 GTCCTCTGAACCTGTCACTCG 60.068 57.143 0.00 0.00 31.13 4.18
3965 9640 3.126073 CTCCAAAAGTTTCCTGCTTTGC 58.874 45.455 0.00 0.00 36.43 3.68
4013 9688 2.667470 TGGCCTACAGGAGTATCTGTC 58.333 52.381 3.32 0.00 43.82 3.51
4043 9718 1.053424 TTCAAACCCTAGACGCCAGT 58.947 50.000 0.00 0.00 0.00 4.00
4060 9735 1.670811 CATCACCTACGCATTGGGTTC 59.329 52.381 11.90 0.00 0.00 3.62
4071 9746 4.407296 AGAGACTTGGGAATCATCACCTAC 59.593 45.833 0.00 0.00 0.00 3.18
4083 9759 3.107601 CCACTATTCCAGAGACTTGGGA 58.892 50.000 4.49 0.00 38.81 4.37
4153 9829 3.285484 CTGGGTTGGATCTCAAAGATGG 58.715 50.000 0.00 0.00 34.53 3.51
4206 9932 6.431234 ACTCAACTCCACAGGAATTTCATTAC 59.569 38.462 0.00 0.00 0.00 1.89
4207 9933 6.542821 ACTCAACTCCACAGGAATTTCATTA 58.457 36.000 0.00 0.00 0.00 1.90
4237 9963 3.821033 GCCATTTGAGGTGTCTAGTGTTT 59.179 43.478 0.00 0.00 0.00 2.83
4266 9993 6.329838 TGATTTGCAAAGAAAACAAACTCG 57.670 33.333 18.19 0.00 36.22 4.18
4270 9997 7.327214 AGTACCTGATTTGCAAAGAAAACAAA 58.673 30.769 18.19 0.00 37.66 2.83
4278 10005 4.455533 TGTGCTAGTACCTGATTTGCAAAG 59.544 41.667 18.19 6.32 0.00 2.77
4282 10009 5.355350 AGAAATGTGCTAGTACCTGATTTGC 59.645 40.000 8.60 3.61 0.00 3.68
4291 10018 4.631377 TGTGCATGAGAAATGTGCTAGTAC 59.369 41.667 3.70 3.70 0.00 2.73
4295 10022 4.074259 ACTTGTGCATGAGAAATGTGCTA 58.926 39.130 0.00 0.00 0.00 3.49
4296 10023 2.889045 ACTTGTGCATGAGAAATGTGCT 59.111 40.909 0.00 0.00 0.00 4.40
4297 10024 3.293311 ACTTGTGCATGAGAAATGTGC 57.707 42.857 0.00 0.00 0.00 4.57
4309 10036 3.636300 ACTAAAATGGCAGAACTTGTGCA 59.364 39.130 12.58 0.31 43.12 4.57
4313 10040 8.816640 AACATAAACTAAAATGGCAGAACTTG 57.183 30.769 0.00 0.00 0.00 3.16
4322 10049 9.294030 GAGAGCAATGAACATAAACTAAAATGG 57.706 33.333 0.00 0.00 0.00 3.16
4329 10056 5.251764 AGCTGAGAGCAATGAACATAAACT 58.748 37.500 0.00 0.00 45.56 2.66
4332 10059 4.080695 AGGAGCTGAGAGCAATGAACATAA 60.081 41.667 0.00 0.00 45.56 1.90
4333 10060 3.453717 AGGAGCTGAGAGCAATGAACATA 59.546 43.478 0.00 0.00 45.56 2.29
4387 10114 2.143925 CTCAGGACCAAAAGACCGAAC 58.856 52.381 0.00 0.00 35.19 3.95
4433 10161 8.454106 CACACAGAGAAATAATAAAACTGAGGG 58.546 37.037 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.