Multiple sequence alignment - TraesCS5B01G320800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G320800 chr5B 100.000 4956 0 0 1 4956 506316468 506311513 0.000000e+00 9153.0
1 TraesCS5B01G320800 chr5B 92.737 179 11 1 3018 3194 409866841 409867019 1.770000e-64 257.0
2 TraesCS5B01G320800 chr5B 74.074 756 131 52 3964 4688 506298302 506297581 2.960000e-62 250.0
3 TraesCS5B01G320800 chr5B 84.404 218 27 4 14 230 608713586 608713375 1.810000e-49 207.0
4 TraesCS5B01G320800 chr5D 94.997 1779 65 8 3197 4956 418933832 418932059 0.000000e+00 2771.0
5 TraesCS5B01G320800 chr5D 86.578 1505 84 36 8 1492 418937064 418935658 0.000000e+00 1552.0
6 TraesCS5B01G320800 chr5D 95.220 795 26 10 2189 2977 418934738 418933950 0.000000e+00 1247.0
7 TraesCS5B01G320800 chr5D 88.756 418 31 10 1775 2189 418935247 418934843 9.580000e-137 497.0
8 TraesCS5B01G320800 chr5D 88.053 226 15 5 1483 1696 418935466 418935241 1.770000e-64 257.0
9 TraesCS5B01G320800 chr5D 95.506 89 4 0 1692 1780 86401038 86400950 5.170000e-30 143.0
10 TraesCS5B01G320800 chr5D 95.506 89 4 0 1694 1782 373835030 373834942 5.170000e-30 143.0
11 TraesCS5B01G320800 chr5D 97.917 48 1 0 2976 3023 418933924 418933877 3.180000e-12 84.2
12 TraesCS5B01G320800 chr5A 89.317 1713 114 25 8 1696 533557609 533555942 0.000000e+00 2085.0
13 TraesCS5B01G320800 chr5A 91.196 920 61 6 3258 4160 533554528 533553612 0.000000e+00 1232.0
14 TraesCS5B01G320800 chr5A 90.094 959 57 11 2025 2977 533555651 533554725 0.000000e+00 1210.0
15 TraesCS5B01G320800 chr5A 87.237 807 70 17 4159 4956 533553556 533552774 0.000000e+00 889.0
16 TraesCS5B01G320800 chr5A 87.931 232 17 10 1784 2008 533555935 533555708 3.800000e-66 263.0
17 TraesCS5B01G320800 chr5A 79.580 333 51 13 3964 4283 533551892 533551564 6.460000e-54 222.0
18 TraesCS5B01G320800 chr3D 95.906 171 7 0 3022 3192 410670224 410670054 1.360000e-70 278.0
19 TraesCS5B01G320800 chr3D 82.743 226 28 5 23 244 581095856 581095638 1.820000e-44 191.0
20 TraesCS5B01G320800 chr1B 96.429 168 6 0 3020 3187 159917280 159917447 1.360000e-70 278.0
21 TraesCS5B01G320800 chr6B 96.296 162 6 0 3022 3183 8401305 8401466 2.940000e-67 267.0
22 TraesCS5B01G320800 chr6B 94.118 170 10 0 3017 3186 149526891 149527060 4.920000e-65 259.0
23 TraesCS5B01G320800 chr6B 80.709 254 40 8 1016 1266 461961849 461961602 6.550000e-44 189.0
24 TraesCS5B01G320800 chr3B 95.679 162 7 0 3022 3183 263271164 263271003 1.370000e-65 261.0
25 TraesCS5B01G320800 chr3B 94.083 169 10 0 3022 3190 183601247 183601079 1.770000e-64 257.0
26 TraesCS5B01G320800 chr3B 80.672 238 39 5 12 247 775364020 775363788 1.420000e-40 178.0
27 TraesCS5B01G320800 chr7B 94.578 166 9 0 3022 3187 131081708 131081543 1.770000e-64 257.0
28 TraesCS5B01G320800 chr7B 94.565 92 4 1 1689 1780 533547759 533547849 1.860000e-29 141.0
29 TraesCS5B01G320800 chr7A 90.761 184 16 1 3022 3205 689378281 689378099 1.380000e-60 244.0
30 TraesCS5B01G320800 chr7A 80.714 280 45 7 994 1269 12429652 12429378 5.030000e-50 209.0
31 TraesCS5B01G320800 chr7A 93.617 94 5 1 1688 1781 126943037 126943129 6.690000e-29 139.0
32 TraesCS5B01G320800 chr4A 80.727 275 45 5 999 1269 724782634 724782904 1.810000e-49 207.0
33 TraesCS5B01G320800 chr4A 79.835 243 39 6 3 244 105629027 105629260 8.530000e-38 169.0
34 TraesCS5B01G320800 chr6D 80.709 254 40 8 1016 1266 298207265 298207018 6.550000e-44 189.0
35 TraesCS5B01G320800 chr6D 80.237 253 43 6 1016 1266 298444793 298444546 3.050000e-42 183.0
36 TraesCS5B01G320800 chr6A 79.554 269 46 8 1001 1266 421102766 421103028 3.050000e-42 183.0
37 TraesCS5B01G320800 chr1D 81.659 229 35 7 1043 1269 364625230 364625007 3.050000e-42 183.0
38 TraesCS5B01G320800 chr1D 81.385 231 35 5 14 242 111856677 111856901 1.100000e-41 182.0
39 TraesCS5B01G320800 chr3A 80.400 250 38 6 1 244 729706661 729706417 3.940000e-41 180.0
40 TraesCS5B01G320800 chr4B 81.057 227 34 4 23 245 60081022 60080801 6.600000e-39 172.0
41 TraesCS5B01G320800 chr2B 93.750 96 6 0 1694 1789 250686456 250686551 1.440000e-30 145.0
42 TraesCS5B01G320800 chr2B 94.505 91 5 0 1689 1779 13713014 13713104 1.860000e-29 141.0
43 TraesCS5B01G320800 chr2B 89.091 110 12 0 1679 1788 359866313 359866204 2.410000e-28 137.0
44 TraesCS5B01G320800 chr2A 93.617 94 6 0 1686 1779 747677909 747678002 1.860000e-29 141.0
45 TraesCS5B01G320800 chr2A 91.262 103 5 4 1679 1779 622029573 622029673 2.410000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G320800 chr5B 506311513 506316468 4955 True 9153.000000 9153 100.000000 1 4956 1 chr5B.!!$R2 4955
1 TraesCS5B01G320800 chr5B 506297581 506298302 721 True 250.000000 250 74.074000 3964 4688 1 chr5B.!!$R1 724
2 TraesCS5B01G320800 chr5D 418932059 418937064 5005 True 1068.033333 2771 91.920167 8 4956 6 chr5D.!!$R3 4948
3 TraesCS5B01G320800 chr5A 533551564 533557609 6045 True 983.500000 2085 87.559167 8 4956 6 chr5A.!!$R1 4948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.034059 CCTTTGAGTCGCTCCAGTGT 59.966 55.0 4.73 0.0 0.00 3.55 F
924 950 0.245539 CGCGGAGAAAGAGGTTGGTA 59.754 55.0 0.00 0.0 0.00 3.25 F
1698 1947 0.108424 CCAGCAGTGTGAGCTACTCC 60.108 60.0 0.00 0.0 41.14 3.85 F
1699 1948 0.108424 CAGCAGTGTGAGCTACTCCC 60.108 60.0 0.00 0.0 41.14 4.30 F
1701 1950 0.174617 GCAGTGTGAGCTACTCCCTC 59.825 60.0 0.00 0.0 0.00 4.30 F
3739 4262 0.250467 TGAAGTGGCTGCTGGAAGAC 60.250 55.0 0.00 0.0 34.07 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 1928 0.108424 GGAGTAGCTCACACTGCTGG 60.108 60.000 0.00 0.00 41.32 4.85 R
2104 2402 0.246360 TAGGTCACCAGCATGTCACG 59.754 55.000 0.00 0.00 0.00 4.35 R
3662 4185 1.332552 CGTAGTGTTGTCGGTGTTTGC 60.333 52.381 0.00 0.00 0.00 3.68 R
3755 4278 0.249120 TCTTCGACGATGCCAATGGT 59.751 50.000 0.00 0.00 0.00 3.55 R
3913 4436 1.592669 GTCGACCATGGAGGCATCG 60.593 63.158 21.47 16.98 43.14 3.84 R
4665 5281 0.961019 TGCAATGAACCTCAACAGCC 59.039 50.000 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.387622 TTAGCACGACGACTTTCCGG 60.388 55.000 0.00 0.00 0.00 5.14
78 79 0.106015 AACAAGGTTTGCCTGGCTCT 60.106 50.000 21.03 9.17 46.33 4.09
79 80 0.771127 ACAAGGTTTGCCTGGCTCTA 59.229 50.000 21.03 2.27 46.33 2.43
98 99 1.070604 AATGATGGAGGGGCGATGAT 58.929 50.000 0.00 0.00 0.00 2.45
127 128 0.034059 CCTTTGAGTCGCTCCAGTGT 59.966 55.000 4.73 0.00 0.00 3.55
139 140 2.870411 GCTCCAGTGTTTTGTAGTCGTT 59.130 45.455 0.00 0.00 0.00 3.85
142 143 2.598907 CCAGTGTTTTGTAGTCGTTGCG 60.599 50.000 0.00 0.00 0.00 4.85
196 197 9.565213 TTTATTCTAGTGTTCTTTCTACTACGC 57.435 33.333 0.00 0.00 0.00 4.42
213 214 2.632377 ACGCACCTTGATAGTTGATGG 58.368 47.619 0.00 0.00 0.00 3.51
218 219 5.509670 CGCACCTTGATAGTTGATGGATAGA 60.510 44.000 0.00 0.00 0.00 1.98
220 221 6.939163 GCACCTTGATAGTTGATGGATAGATT 59.061 38.462 0.00 0.00 0.00 2.40
260 262 4.929819 AAAAACTTCAGGGTAAATGCGT 57.070 36.364 0.00 0.00 0.00 5.24
313 315 8.950007 TTCCATTGTTTATTTTCTACCTTCCT 57.050 30.769 0.00 0.00 0.00 3.36
320 322 8.202137 TGTTTATTTTCTACCTTCCTATCGAGG 58.798 37.037 0.00 0.00 45.35 4.63
377 380 4.142182 ACCCGGATTGACAAATATTGCAAG 60.142 41.667 0.73 0.00 32.91 4.01
404 407 7.171630 TCAAGTGAGAAGAAACCTATCTACC 57.828 40.000 0.00 0.00 0.00 3.18
405 408 6.954684 TCAAGTGAGAAGAAACCTATCTACCT 59.045 38.462 0.00 0.00 0.00 3.08
406 409 8.114102 TCAAGTGAGAAGAAACCTATCTACCTA 58.886 37.037 0.00 0.00 0.00 3.08
407 410 7.885009 AGTGAGAAGAAACCTATCTACCTAC 57.115 40.000 0.00 0.00 0.00 3.18
411 414 9.322769 TGAGAAGAAACCTATCTACCTACTTTT 57.677 33.333 0.00 0.00 0.00 2.27
421 424 5.748670 TCTACCTACTTTTGTGGCATGTA 57.251 39.130 0.00 0.00 0.00 2.29
422 425 6.308015 TCTACCTACTTTTGTGGCATGTAT 57.692 37.500 0.00 0.00 0.00 2.29
425 428 7.985184 TCTACCTACTTTTGTGGCATGTATTAG 59.015 37.037 0.00 0.00 0.00 1.73
426 429 5.885912 ACCTACTTTTGTGGCATGTATTAGG 59.114 40.000 0.00 0.00 0.00 2.69
427 430 5.885912 CCTACTTTTGTGGCATGTATTAGGT 59.114 40.000 0.00 0.00 0.00 3.08
450 454 3.555956 GTGGCACATAGTAGTACACATGC 59.444 47.826 13.86 10.84 44.52 4.06
452 456 4.081142 TGGCACATAGTAGTACACATGCTT 60.081 41.667 14.55 0.00 0.00 3.91
536 540 0.600255 GTGACGAGACCAACACCCAG 60.600 60.000 0.00 0.00 0.00 4.45
623 631 4.399618 TGTAACAGCCTTTGTACAAAGCAA 59.600 37.500 33.59 16.51 44.76 3.91
658 666 4.528596 AGCAAGGTGTACAGTATGAGAGTT 59.471 41.667 0.00 0.00 39.69 3.01
664 672 5.162075 GTGTACAGTATGAGAGTTGTGTCC 58.838 45.833 0.00 0.00 39.69 4.02
717 725 1.589399 CCTGTCTCCTCCCTCCCTCT 61.589 65.000 0.00 0.00 0.00 3.69
718 726 0.338120 CTGTCTCCTCCCTCCCTCTT 59.662 60.000 0.00 0.00 0.00 2.85
719 727 0.336737 TGTCTCCTCCCTCCCTCTTC 59.663 60.000 0.00 0.00 0.00 2.87
720 728 0.336737 GTCTCCTCCCTCCCTCTTCA 59.663 60.000 0.00 0.00 0.00 3.02
721 729 1.062505 GTCTCCTCCCTCCCTCTTCAT 60.063 57.143 0.00 0.00 0.00 2.57
722 730 1.653918 TCTCCTCCCTCCCTCTTCATT 59.346 52.381 0.00 0.00 0.00 2.57
723 731 2.046447 TCTCCTCCCTCCCTCTTCATTT 59.954 50.000 0.00 0.00 0.00 2.32
724 732 2.172293 CTCCTCCCTCCCTCTTCATTTG 59.828 54.545 0.00 0.00 0.00 2.32
725 733 1.409381 CCTCCCTCCCTCTTCATTTGC 60.409 57.143 0.00 0.00 0.00 3.68
726 734 0.625849 TCCCTCCCTCTTCATTTGCC 59.374 55.000 0.00 0.00 0.00 4.52
727 735 0.332632 CCCTCCCTCTTCATTTGCCA 59.667 55.000 0.00 0.00 0.00 4.92
773 783 2.111613 AGATCTAGCTAGCCCATGGACT 59.888 50.000 15.22 10.23 0.00 3.85
782 796 2.694397 AGCCCATGGACTGAGCTATAA 58.306 47.619 15.22 0.00 30.46 0.98
891 905 3.145551 CCTGCCCAAGCCATCAGC 61.146 66.667 0.00 0.00 44.25 4.26
924 950 0.245539 CGCGGAGAAAGAGGTTGGTA 59.754 55.000 0.00 0.00 0.00 3.25
1294 1320 7.280205 ACATAATTTTTCTCATCCCACGTACTC 59.720 37.037 0.00 0.00 0.00 2.59
1295 1321 3.604875 TTTTCTCATCCCACGTACTCC 57.395 47.619 0.00 0.00 0.00 3.85
1296 1322 2.526888 TTCTCATCCCACGTACTCCT 57.473 50.000 0.00 0.00 0.00 3.69
1297 1323 3.657398 TTCTCATCCCACGTACTCCTA 57.343 47.619 0.00 0.00 0.00 2.94
1298 1324 2.928334 TCTCATCCCACGTACTCCTAC 58.072 52.381 0.00 0.00 0.00 3.18
1299 1325 2.508716 TCTCATCCCACGTACTCCTACT 59.491 50.000 0.00 0.00 0.00 2.57
1314 1340 7.041576 CGTACTCCTACTTGCATGTACATACTA 60.042 40.741 8.32 0.00 32.41 1.82
1341 1367 4.313020 AGGGAAAATGCATGAGAGTCTT 57.687 40.909 0.00 0.00 0.00 3.01
1343 1369 3.379688 GGGAAAATGCATGAGAGTCTTCC 59.620 47.826 0.00 4.52 0.00 3.46
1344 1370 4.012374 GGAAAATGCATGAGAGTCTTCCA 58.988 43.478 0.00 0.00 32.94 3.53
1347 1380 3.928005 ATGCATGAGAGTCTTCCACAT 57.072 42.857 0.00 0.00 0.00 3.21
1379 1412 1.953686 TGGATCGATGATCACGTAGCA 59.046 47.619 0.54 0.00 40.50 3.49
1518 1755 5.012354 ACGAAAAGGACCTGACCAATACTAA 59.988 40.000 0.00 0.00 0.00 2.24
1532 1769 5.852738 CAATACTAATTGGGATCGAGCTG 57.147 43.478 0.00 0.00 39.10 4.24
1538 1775 0.397114 TTGGGATCGAGCTGGCTAGA 60.397 55.000 0.00 7.75 32.59 2.43
1539 1776 0.825425 TGGGATCGAGCTGGCTAGAG 60.825 60.000 0.00 0.00 31.63 2.43
1541 1778 1.544724 GGATCGAGCTGGCTAGAGAT 58.455 55.000 0.00 1.90 31.63 2.75
1542 1779 1.472480 GGATCGAGCTGGCTAGAGATC 59.528 57.143 16.54 16.54 34.16 2.75
1631 1877 3.128589 TGAGTCCAAACAACTTCAACTGC 59.871 43.478 0.00 0.00 0.00 4.40
1634 1880 2.426738 TCCAAACAACTTCAACTGCCAG 59.573 45.455 0.00 0.00 0.00 4.85
1649 1895 1.181098 GCCAGGAGCACACACCAAAT 61.181 55.000 0.00 0.00 42.97 2.32
1650 1896 0.883833 CCAGGAGCACACACCAAATC 59.116 55.000 0.00 0.00 0.00 2.17
1652 1898 1.808945 CAGGAGCACACACCAAATCTC 59.191 52.381 0.00 0.00 0.00 2.75
1658 1907 5.048083 GGAGCACACACCAAATCTCAAATTA 60.048 40.000 0.00 0.00 0.00 1.40
1693 1942 1.539560 ATCGACCAGCAGTGTGAGCT 61.540 55.000 0.00 0.00 44.62 4.09
1694 1943 0.893727 TCGACCAGCAGTGTGAGCTA 60.894 55.000 0.00 0.00 41.14 3.32
1695 1944 0.734253 CGACCAGCAGTGTGAGCTAC 60.734 60.000 0.00 0.00 41.14 3.58
1696 1945 0.605589 GACCAGCAGTGTGAGCTACT 59.394 55.000 0.00 0.00 41.14 2.57
1697 1946 0.605589 ACCAGCAGTGTGAGCTACTC 59.394 55.000 0.00 0.00 41.14 2.59
1698 1947 0.108424 CCAGCAGTGTGAGCTACTCC 60.108 60.000 0.00 0.00 41.14 3.85
1699 1948 0.108424 CAGCAGTGTGAGCTACTCCC 60.108 60.000 0.00 0.00 41.14 4.30
1700 1949 0.252012 AGCAGTGTGAGCTACTCCCT 60.252 55.000 0.00 0.00 41.32 4.20
1701 1950 0.174617 GCAGTGTGAGCTACTCCCTC 59.825 60.000 0.00 0.00 0.00 4.30
1702 1951 0.453793 CAGTGTGAGCTACTCCCTCG 59.546 60.000 0.00 0.00 31.98 4.63
1703 1952 0.681564 AGTGTGAGCTACTCCCTCGG 60.682 60.000 0.00 0.00 31.98 4.63
1704 1953 0.966370 GTGTGAGCTACTCCCTCGGT 60.966 60.000 0.00 0.00 31.98 4.69
1705 1954 0.251653 TGTGAGCTACTCCCTCGGTT 60.252 55.000 0.00 0.00 31.98 4.44
1706 1955 0.456628 GTGAGCTACTCCCTCGGTTC 59.543 60.000 0.00 0.00 31.98 3.62
1707 1956 0.683504 TGAGCTACTCCCTCGGTTCC 60.684 60.000 0.00 0.00 31.98 3.62
1708 1957 0.683504 GAGCTACTCCCTCGGTTCCA 60.684 60.000 0.00 0.00 0.00 3.53
1709 1958 0.252103 AGCTACTCCCTCGGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
1710 1959 0.611714 GCTACTCCCTCGGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
1711 1960 1.002773 GCTACTCCCTCGGTTCCAAAA 59.997 52.381 0.00 0.00 0.00 2.44
1712 1961 2.355818 GCTACTCCCTCGGTTCCAAAAT 60.356 50.000 0.00 0.00 0.00 1.82
1713 1962 3.118519 GCTACTCCCTCGGTTCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
1714 1963 3.345508 ACTCCCTCGGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
1715 1964 2.640826 ACTCCCTCGGTTCCAAAATACA 59.359 45.455 0.00 0.00 0.00 2.29
1716 1965 3.265995 ACTCCCTCGGTTCCAAAATACAT 59.734 43.478 0.00 0.00 0.00 2.29
1717 1966 3.616219 TCCCTCGGTTCCAAAATACATG 58.384 45.455 0.00 0.00 0.00 3.21
1718 1967 3.264706 TCCCTCGGTTCCAAAATACATGA 59.735 43.478 0.00 0.00 0.00 3.07
1719 1968 4.080015 TCCCTCGGTTCCAAAATACATGAT 60.080 41.667 0.00 0.00 0.00 2.45
1720 1969 4.275936 CCCTCGGTTCCAAAATACATGATC 59.724 45.833 0.00 0.00 0.00 2.92
1721 1970 4.275936 CCTCGGTTCCAAAATACATGATCC 59.724 45.833 0.00 0.00 0.00 3.36
1722 1971 4.849518 TCGGTTCCAAAATACATGATCCA 58.150 39.130 0.00 0.00 0.00 3.41
1723 1972 5.257262 TCGGTTCCAAAATACATGATCCAA 58.743 37.500 0.00 0.00 0.00 3.53
1724 1973 5.124776 TCGGTTCCAAAATACATGATCCAAC 59.875 40.000 0.00 0.00 0.00 3.77
1725 1974 5.125417 CGGTTCCAAAATACATGATCCAACT 59.875 40.000 0.00 0.00 0.00 3.16
1726 1975 6.350110 CGGTTCCAAAATACATGATCCAACTT 60.350 38.462 0.00 0.00 0.00 2.66
1727 1976 7.386059 GGTTCCAAAATACATGATCCAACTTT 58.614 34.615 0.00 0.00 0.00 2.66
1728 1977 7.331687 GGTTCCAAAATACATGATCCAACTTTG 59.668 37.037 0.00 0.00 0.00 2.77
1729 1978 7.537596 TCCAAAATACATGATCCAACTTTGT 57.462 32.000 0.00 0.00 0.00 2.83
1730 1979 8.642935 TCCAAAATACATGATCCAACTTTGTA 57.357 30.769 0.00 0.00 0.00 2.41
1731 1980 8.519526 TCCAAAATACATGATCCAACTTTGTAC 58.480 33.333 0.00 0.00 0.00 2.90
1732 1981 8.522830 CCAAAATACATGATCCAACTTTGTACT 58.477 33.333 0.00 0.00 0.00 2.73
1737 1986 9.959721 ATACATGATCCAACTTTGTACTAAAGT 57.040 29.630 14.04 14.04 41.82 2.66
1739 1988 9.787435 ACATGATCCAACTTTGTACTAAAGTTA 57.213 29.630 23.56 15.71 45.57 2.24
1755 2004 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
1756 2005 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
1757 2006 6.877611 AAGTTAGTACAAAGTTGGGTCATG 57.122 37.500 0.00 0.00 0.00 3.07
1758 2007 5.937111 AGTTAGTACAAAGTTGGGTCATGT 58.063 37.500 0.00 0.00 0.00 3.21
1759 2008 7.069877 AGTTAGTACAAAGTTGGGTCATGTA 57.930 36.000 0.00 0.00 0.00 2.29
1760 2009 7.686434 AGTTAGTACAAAGTTGGGTCATGTAT 58.314 34.615 0.00 0.00 0.00 2.29
1761 2010 8.161425 AGTTAGTACAAAGTTGGGTCATGTATT 58.839 33.333 0.00 0.00 0.00 1.89
1762 2011 8.789762 GTTAGTACAAAGTTGGGTCATGTATTT 58.210 33.333 0.00 0.00 0.00 1.40
1763 2012 7.833285 AGTACAAAGTTGGGTCATGTATTTT 57.167 32.000 0.00 0.00 0.00 1.82
1764 2013 7.657336 AGTACAAAGTTGGGTCATGTATTTTG 58.343 34.615 0.00 0.00 0.00 2.44
1765 2014 5.852827 ACAAAGTTGGGTCATGTATTTTGG 58.147 37.500 0.00 0.00 0.00 3.28
1766 2015 5.600484 ACAAAGTTGGGTCATGTATTTTGGA 59.400 36.000 0.00 0.00 0.00 3.53
1767 2016 6.098982 ACAAAGTTGGGTCATGTATTTTGGAA 59.901 34.615 0.00 0.00 0.00 3.53
1768 2017 5.722021 AGTTGGGTCATGTATTTTGGAAC 57.278 39.130 0.00 0.00 0.00 3.62
1769 2018 4.217550 AGTTGGGTCATGTATTTTGGAACG 59.782 41.667 0.00 0.00 0.00 3.95
1770 2019 3.085533 TGGGTCATGTATTTTGGAACGG 58.914 45.455 0.00 0.00 0.00 4.44
1771 2020 3.244946 TGGGTCATGTATTTTGGAACGGA 60.245 43.478 0.00 0.00 0.00 4.69
1772 2021 3.377172 GGGTCATGTATTTTGGAACGGAG 59.623 47.826 0.00 0.00 0.00 4.63
1773 2022 3.377172 GGTCATGTATTTTGGAACGGAGG 59.623 47.826 0.00 0.00 0.00 4.30
1774 2023 3.377172 GTCATGTATTTTGGAACGGAGGG 59.623 47.826 0.00 0.00 0.00 4.30
1775 2024 3.264706 TCATGTATTTTGGAACGGAGGGA 59.735 43.478 0.00 0.00 0.00 4.20
1776 2025 3.343941 TGTATTTTGGAACGGAGGGAG 57.656 47.619 0.00 0.00 0.00 4.30
1803 2056 3.708121 AGGTAGTATGTACCTTTTCGGGG 59.292 47.826 3.30 0.00 45.06 5.73
1836 2089 0.670162 TAGTACGTAGCCCGAATGCC 59.330 55.000 0.00 0.00 40.70 4.40
1852 2105 3.523606 ATGCCAGATAGAGATCGATGC 57.476 47.619 0.54 0.00 37.15 3.91
1853 2106 2.242043 TGCCAGATAGAGATCGATGCA 58.758 47.619 0.54 0.00 37.15 3.96
1894 2147 2.239681 AGGCAGTACTAGGAAGCAGT 57.760 50.000 0.00 0.00 0.00 4.40
1895 2148 3.383698 AGGCAGTACTAGGAAGCAGTA 57.616 47.619 0.00 0.00 0.00 2.74
1897 2150 4.290942 AGGCAGTACTAGGAAGCAGTAAT 58.709 43.478 0.00 0.00 30.54 1.89
1899 2152 4.811557 GGCAGTACTAGGAAGCAGTAATTG 59.188 45.833 0.00 0.00 30.54 2.32
1904 2157 9.988815 CAGTACTAGGAAGCAGTAATTGATTAT 57.011 33.333 0.00 0.00 35.08 1.28
1909 2162 7.426929 AGGAAGCAGTAATTGATTATTAGCG 57.573 36.000 0.00 0.00 35.08 4.26
1910 2163 6.073003 AGGAAGCAGTAATTGATTATTAGCGC 60.073 38.462 0.00 0.00 35.08 5.92
1911 2164 5.269459 AGCAGTAATTGATTATTAGCGCG 57.731 39.130 0.00 0.00 34.50 6.86
1914 2167 5.163992 GCAGTAATTGATTATTAGCGCGCTA 60.164 40.000 35.48 35.48 29.44 4.26
1983 2241 5.856126 TGTGATGAACTGTTATTTCCGTC 57.144 39.130 0.00 0.00 0.00 4.79
2001 2259 5.838529 TCCGTCGAGCAATTAATAGAATCA 58.161 37.500 0.00 0.00 0.00 2.57
2008 2266 9.981114 TCGAGCAATTAATAGAATCAAGTATCA 57.019 29.630 0.00 0.00 0.00 2.15
2020 2278 6.488683 AGAATCAAGTATCACCGGTTGAAAAA 59.511 34.615 2.97 0.00 37.92 1.94
2080 2378 5.278758 CGACTGGAAATTGTAAAACCATGGT 60.279 40.000 13.00 13.00 30.12 3.55
2103 2401 9.389755 TGGTGAAATATGTCATCGAAGAATAAA 57.610 29.630 0.00 0.00 43.58 1.40
2104 2402 9.651718 GGTGAAATATGTCATCGAAGAATAAAC 57.348 33.333 0.00 0.00 43.58 2.01
2145 2443 4.717233 TTGCCTTCGTACGAGGTTTATA 57.283 40.909 23.60 5.10 0.00 0.98
2241 2646 6.610075 AATGAATGGTCCTTAATGCAAAGT 57.390 33.333 0.00 0.00 0.00 2.66
2245 2650 6.889177 TGAATGGTCCTTAATGCAAAGTCATA 59.111 34.615 0.00 0.00 0.00 2.15
2246 2651 6.699575 ATGGTCCTTAATGCAAAGTCATAC 57.300 37.500 0.00 0.00 0.00 2.39
2247 2652 5.815581 TGGTCCTTAATGCAAAGTCATACT 58.184 37.500 0.00 0.00 0.00 2.12
2369 2774 5.834204 TCTAGCCTCTAGGAATCCTAAACAC 59.166 44.000 10.62 1.21 35.49 3.32
2370 2775 3.712218 AGCCTCTAGGAATCCTAAACACC 59.288 47.826 10.62 0.00 35.49 4.16
2392 2797 5.717178 ACCGAATATCAGTATATGCAGAGGT 59.283 40.000 0.00 0.00 0.00 3.85
2484 2890 6.151648 GGCATACAATGATACAAGTGGCATAT 59.848 38.462 0.00 0.00 0.00 1.78
2485 2891 7.336679 GGCATACAATGATACAAGTGGCATATA 59.663 37.037 0.00 0.00 0.00 0.86
2616 3023 1.739562 GCTCGTGTGGCTGAGGAAG 60.740 63.158 0.00 0.00 32.78 3.46
2650 3057 6.111669 TGGATTCAAAAATGGAAAGCATCA 57.888 33.333 0.00 0.00 0.00 3.07
2801 3209 7.657354 CGATGGAGTGGATAGTGATATTTGAAA 59.343 37.037 0.00 0.00 0.00 2.69
3027 3463 9.457436 TCTCTAATTTGGTTATGTTTTACTCCC 57.543 33.333 0.00 0.00 0.00 4.30
3028 3464 9.462606 CTCTAATTTGGTTATGTTTTACTCCCT 57.537 33.333 0.00 0.00 0.00 4.20
3029 3465 9.457436 TCTAATTTGGTTATGTTTTACTCCCTC 57.543 33.333 0.00 0.00 0.00 4.30
3030 3466 7.476540 AATTTGGTTATGTTTTACTCCCTCC 57.523 36.000 0.00 0.00 0.00 4.30
3031 3467 4.210724 TGGTTATGTTTTACTCCCTCCG 57.789 45.455 0.00 0.00 0.00 4.63
3032 3468 3.583966 TGGTTATGTTTTACTCCCTCCGT 59.416 43.478 0.00 0.00 0.00 4.69
3033 3469 4.041938 TGGTTATGTTTTACTCCCTCCGTT 59.958 41.667 0.00 0.00 0.00 4.44
3034 3470 4.633126 GGTTATGTTTTACTCCCTCCGTTC 59.367 45.833 0.00 0.00 0.00 3.95
3035 3471 2.845363 TGTTTTACTCCCTCCGTTCC 57.155 50.000 0.00 0.00 0.00 3.62
3036 3472 2.332117 TGTTTTACTCCCTCCGTTCCT 58.668 47.619 0.00 0.00 0.00 3.36
3037 3473 3.509442 TGTTTTACTCCCTCCGTTCCTA 58.491 45.455 0.00 0.00 0.00 2.94
3038 3474 3.903090 TGTTTTACTCCCTCCGTTCCTAA 59.097 43.478 0.00 0.00 0.00 2.69
3039 3475 4.347583 TGTTTTACTCCCTCCGTTCCTAAA 59.652 41.667 0.00 0.00 0.00 1.85
3040 3476 5.013391 TGTTTTACTCCCTCCGTTCCTAAAT 59.987 40.000 0.00 0.00 0.00 1.40
3041 3477 6.213195 TGTTTTACTCCCTCCGTTCCTAAATA 59.787 38.462 0.00 0.00 0.00 1.40
3042 3478 7.092757 TGTTTTACTCCCTCCGTTCCTAAATAT 60.093 37.037 0.00 0.00 0.00 1.28
3043 3479 8.424133 GTTTTACTCCCTCCGTTCCTAAATATA 58.576 37.037 0.00 0.00 0.00 0.86
3044 3480 8.551682 TTTACTCCCTCCGTTCCTAAATATAA 57.448 34.615 0.00 0.00 0.00 0.98
3045 3481 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3046 3482 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3047 3483 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3048 3484 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3049 3485 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3050 3486 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3051 3487 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3052 3488 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3068 3504 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
3069 3505 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
3070 3506 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
3071 3507 8.254508 GTCTTTGTAGAGATTCCACTATGAACT 58.745 37.037 0.00 0.00 0.00 3.01
3072 3508 9.475620 TCTTTGTAGAGATTCCACTATGAACTA 57.524 33.333 0.00 0.00 0.00 2.24
3073 3509 9.522804 CTTTGTAGAGATTCCACTATGAACTAC 57.477 37.037 0.00 0.00 0.00 2.73
3074 3510 8.589701 TTGTAGAGATTCCACTATGAACTACA 57.410 34.615 0.00 0.00 33.29 2.74
3075 3511 8.768501 TGTAGAGATTCCACTATGAACTACAT 57.231 34.615 0.00 0.00 42.39 2.29
3076 3512 9.862149 TGTAGAGATTCCACTATGAACTACATA 57.138 33.333 0.00 0.00 40.07 2.29
3078 3514 7.877003 AGAGATTCCACTATGAACTACATACG 58.123 38.462 0.00 0.00 40.07 3.06
3079 3515 6.982852 AGATTCCACTATGAACTACATACGG 58.017 40.000 0.00 0.00 40.07 4.02
3080 3516 6.776116 AGATTCCACTATGAACTACATACGGA 59.224 38.462 0.00 0.00 40.07 4.69
3081 3517 6.387041 TTCCACTATGAACTACATACGGAG 57.613 41.667 0.00 0.00 38.29 4.63
3100 3536 7.972832 ACGGAGTAAAATGAGTGAATTTACA 57.027 32.000 2.93 0.00 41.94 2.41
3101 3537 7.803724 ACGGAGTAAAATGAGTGAATTTACAC 58.196 34.615 2.93 0.00 41.94 2.90
3134 3570 7.956328 ACATCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3135 3571 8.362464 ACATCTATATACATCCGTATGTGGTT 57.638 34.615 3.56 0.00 45.99 3.67
3136 3572 8.812972 ACATCTATATACATCCGTATGTGGTTT 58.187 33.333 3.56 0.00 45.99 3.27
3143 3579 5.607477 ACATCCGTATGTGGTTTATAGTGG 58.393 41.667 0.00 0.00 44.79 4.00
3144 3580 5.364446 ACATCCGTATGTGGTTTATAGTGGA 59.636 40.000 0.00 0.00 44.79 4.02
3145 3581 5.936187 TCCGTATGTGGTTTATAGTGGAA 57.064 39.130 0.00 0.00 0.00 3.53
3146 3582 6.488769 TCCGTATGTGGTTTATAGTGGAAT 57.511 37.500 0.00 0.00 0.00 3.01
3147 3583 6.518493 TCCGTATGTGGTTTATAGTGGAATC 58.482 40.000 0.00 0.00 0.00 2.52
3148 3584 6.325545 TCCGTATGTGGTTTATAGTGGAATCT 59.674 38.462 0.00 0.00 0.00 2.40
3149 3585 6.645415 CCGTATGTGGTTTATAGTGGAATCTC 59.355 42.308 0.00 0.00 0.00 2.75
3150 3586 7.434492 CGTATGTGGTTTATAGTGGAATCTCT 58.566 38.462 0.00 0.00 0.00 3.10
3151 3587 8.573885 CGTATGTGGTTTATAGTGGAATCTCTA 58.426 37.037 0.00 0.00 0.00 2.43
3152 3588 9.915629 GTATGTGGTTTATAGTGGAATCTCTAG 57.084 37.037 0.00 0.00 0.00 2.43
3153 3589 8.783660 ATGTGGTTTATAGTGGAATCTCTAGA 57.216 34.615 0.00 0.00 0.00 2.43
3154 3590 8.603898 TGTGGTTTATAGTGGAATCTCTAGAA 57.396 34.615 0.00 0.00 0.00 2.10
3155 3591 9.042450 TGTGGTTTATAGTGGAATCTCTAGAAA 57.958 33.333 0.00 0.00 31.75 2.52
3156 3592 9.535878 GTGGTTTATAGTGGAATCTCTAGAAAG 57.464 37.037 0.00 0.00 33.60 2.62
3157 3593 9.488762 TGGTTTATAGTGGAATCTCTAGAAAGA 57.511 33.333 0.00 0.00 33.60 2.52
3158 3594 9.752961 GGTTTATAGTGGAATCTCTAGAAAGAC 57.247 37.037 0.00 0.00 33.60 3.01
3177 3613 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3178 3614 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3179 3615 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3180 3616 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3195 3662 4.090819 GGAGGGAGTAGAAGATATGGACC 58.909 52.174 0.00 0.00 0.00 4.46
3316 3833 7.692908 TTTGAAAGCTTTTGTCTATTTTCCG 57.307 32.000 14.05 0.00 0.00 4.30
3321 3838 5.880341 AGCTTTTGTCTATTTTCCGTATGC 58.120 37.500 0.00 0.00 0.00 3.14
3400 3923 6.353082 CCAAGTTACCAGGAAGGACAGATAAT 60.353 42.308 0.00 0.00 41.22 1.28
3544 4067 2.107366 TCTGCACAATCCTCGACCATA 58.893 47.619 0.00 0.00 0.00 2.74
3625 4148 1.080093 GGACAAGGACGCGTCATCA 60.080 57.895 37.26 0.00 33.66 3.07
3739 4262 0.250467 TGAAGTGGCTGCTGGAAGAC 60.250 55.000 0.00 0.00 34.07 3.01
3913 4436 1.149148 GGGACTCGAGTTTGCTTGAC 58.851 55.000 21.08 3.67 32.04 3.18
3955 4478 4.287067 AGCTCAAGTGGATCAAACCTCTAA 59.713 41.667 0.00 0.00 34.05 2.10
3967 4490 9.080097 GGATCAAACCTCTAATAGTCTAGCTAA 57.920 37.037 0.00 0.00 32.72 3.09
4086 4619 8.323140 CGTTTAATTCTTGGATTGATGCATTTC 58.677 33.333 0.00 0.00 0.00 2.17
4411 5020 2.412089 GGTTCTAAGTTGTAGCAGCACG 59.588 50.000 0.00 0.00 0.00 5.34
4577 5193 4.871993 AGTTATTGCATCTTGAAGAGCG 57.128 40.909 0.00 0.00 0.00 5.03
4589 5205 5.997385 TCTTGAAGAGCGTGGATTTTTAAC 58.003 37.500 0.00 0.00 0.00 2.01
4593 5209 5.049680 TGAAGAGCGTGGATTTTTAACTGTC 60.050 40.000 0.00 0.00 0.00 3.51
4667 5283 6.985645 TGGTAATCATTTTATCAATGCAAGGC 59.014 34.615 0.00 0.00 0.00 4.35
4699 5315 6.582295 GGTTCATTGCAGTTATTGTGTAAGTG 59.418 38.462 0.00 0.00 0.00 3.16
4855 5471 8.414003 AGATGACACTCGCTATTTAATGAAGTA 58.586 33.333 0.00 0.00 0.00 2.24
4856 5472 7.751047 TGACACTCGCTATTTAATGAAGTAC 57.249 36.000 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.752009 AGGACCAGCGCTCGAGAATA 60.752 55.000 18.75 0.00 0.00 1.75
1 2 2.010582 GAGGACCAGCGCTCGAGAAT 62.011 60.000 18.75 0.00 0.00 2.40
3 4 3.134792 GAGGACCAGCGCTCGAGA 61.135 66.667 18.75 0.00 0.00 4.04
4 5 3.137459 AGAGGACCAGCGCTCGAG 61.137 66.667 7.13 8.45 0.00 4.04
5 6 3.443925 CAGAGGACCAGCGCTCGA 61.444 66.667 7.13 0.00 0.00 4.04
6 7 4.504916 CCAGAGGACCAGCGCTCG 62.505 72.222 7.13 2.49 0.00 5.03
26 27 0.714439 GGAAAGTCGTCGTGCTAAGC 59.286 55.000 0.00 0.00 0.00 3.09
47 48 4.319549 GCAAACCTTGTTGTAGTAGACAGC 60.320 45.833 0.00 0.00 39.88 4.40
78 79 1.728323 TCATCGCCCCTCCATCATTA 58.272 50.000 0.00 0.00 0.00 1.90
79 80 1.070604 ATCATCGCCCCTCCATCATT 58.929 50.000 0.00 0.00 0.00 2.57
114 115 2.102588 ACTACAAAACACTGGAGCGACT 59.897 45.455 0.00 0.00 29.34 4.18
115 116 2.475487 GACTACAAAACACTGGAGCGAC 59.525 50.000 0.00 0.00 29.34 5.19
127 128 1.862201 CACCTCGCAACGACTACAAAA 59.138 47.619 0.00 0.00 0.00 2.44
139 140 2.034532 TCCGTAGACCACCTCGCA 59.965 61.111 0.00 0.00 0.00 5.10
178 179 3.573110 AGGTGCGTAGTAGAAAGAACACT 59.427 43.478 0.00 0.00 0.00 3.55
188 189 5.244785 TCAACTATCAAGGTGCGTAGTAG 57.755 43.478 0.00 0.00 40.52 2.57
196 197 7.389884 CCAATCTATCCATCAACTATCAAGGTG 59.610 40.741 0.00 0.00 42.23 4.00
213 214 6.753107 TTCCGGAAAAACTTCCAATCTATC 57.247 37.500 16.28 0.00 41.16 2.08
260 262 8.177119 AGGAAACAACATTTATACTTTGCTGA 57.823 30.769 0.00 0.00 0.00 4.26
359 362 8.981647 ACTTGAAACTTGCAATATTTGTCAATC 58.018 29.630 12.23 2.74 0.00 2.67
377 380 7.971183 AGATAGGTTTCTTCTCACTTGAAAC 57.029 36.000 8.71 8.71 44.94 2.78
397 400 6.308015 ACATGCCACAAAAGTAGGTAGATA 57.692 37.500 0.00 0.00 0.00 1.98
404 407 6.374333 ACACCTAATACATGCCACAAAAGTAG 59.626 38.462 0.00 0.00 0.00 2.57
405 408 6.150307 CACACCTAATACATGCCACAAAAGTA 59.850 38.462 0.00 0.00 0.00 2.24
406 409 5.048083 CACACCTAATACATGCCACAAAAGT 60.048 40.000 0.00 0.00 0.00 2.66
407 410 5.401550 CACACCTAATACATGCCACAAAAG 58.598 41.667 0.00 0.00 0.00 2.27
411 414 2.943646 GCCACACCTAATACATGCCACA 60.944 50.000 0.00 0.00 0.00 4.17
421 424 5.659525 TGTACTACTATGTGCCACACCTAAT 59.340 40.000 0.00 0.00 32.73 1.73
422 425 5.018149 TGTACTACTATGTGCCACACCTAA 58.982 41.667 0.00 0.00 32.73 2.69
425 428 3.056393 TGTGTACTACTATGTGCCACACC 60.056 47.826 0.00 0.00 35.17 4.16
426 429 4.182693 TGTGTACTACTATGTGCCACAC 57.817 45.455 0.00 0.00 36.28 3.82
427 430 4.754322 CATGTGTACTACTATGTGCCACA 58.246 43.478 0.00 0.00 37.45 4.17
471 475 2.617308 ACCGATACTGGAGACACATACG 59.383 50.000 0.00 0.00 35.60 3.06
536 540 0.931005 CTTGCTTTACTCGATCGGCC 59.069 55.000 16.41 0.00 0.00 6.13
567 575 4.157656 CAGTTTCTGTTTTCCCAACAGTCA 59.842 41.667 13.11 1.26 45.75 3.41
578 586 3.798202 AGTCTCTCGCAGTTTCTGTTTT 58.202 40.909 0.00 0.00 33.43 2.43
623 631 1.808945 CACCTTGCTGCTTTCGAATCT 59.191 47.619 0.00 0.00 0.00 2.40
658 666 0.757561 TTGGTCGTCTGAGGGACACA 60.758 55.000 10.01 4.42 44.70 3.72
664 672 0.389166 GAGCACTTGGTCGTCTGAGG 60.389 60.000 0.00 0.00 32.58 3.86
717 725 2.496871 GGTGATGGTGATGGCAAATGAA 59.503 45.455 0.00 0.00 0.00 2.57
718 726 2.101783 GGTGATGGTGATGGCAAATGA 58.898 47.619 0.00 0.00 0.00 2.57
719 727 1.202325 CGGTGATGGTGATGGCAAATG 60.202 52.381 0.00 0.00 0.00 2.32
720 728 1.105457 CGGTGATGGTGATGGCAAAT 58.895 50.000 0.00 0.00 0.00 2.32
721 729 0.251121 ACGGTGATGGTGATGGCAAA 60.251 50.000 0.00 0.00 0.00 3.68
722 730 0.615850 TACGGTGATGGTGATGGCAA 59.384 50.000 0.00 0.00 0.00 4.52
723 731 0.177836 CTACGGTGATGGTGATGGCA 59.822 55.000 0.00 0.00 0.00 4.92
724 732 0.464036 TCTACGGTGATGGTGATGGC 59.536 55.000 0.00 0.00 0.00 4.40
725 733 3.475566 AATCTACGGTGATGGTGATGG 57.524 47.619 0.00 0.00 0.00 3.51
726 734 6.918892 TTTTAATCTACGGTGATGGTGATG 57.081 37.500 0.00 0.00 0.00 3.07
727 735 7.335627 TCTTTTTAATCTACGGTGATGGTGAT 58.664 34.615 0.00 0.00 0.00 3.06
782 796 5.351465 GCTGCAACCATAGCGTGTATATATT 59.649 40.000 0.00 0.00 33.85 1.28
908 922 2.007547 GCGCTACCAACCTCTTTCTCC 61.008 57.143 0.00 0.00 0.00 3.71
934 960 2.415608 GCTCTTAAAAGGCCGGGGC 61.416 63.158 13.58 13.58 41.06 5.80
935 961 1.753078 GGCTCTTAAAAGGCCGGGG 60.753 63.158 2.18 0.00 35.88 5.73
936 962 3.920031 GGCTCTTAAAAGGCCGGG 58.080 61.111 2.18 0.00 35.88 5.73
1294 1320 7.039313 TCTGTAGTATGTACATGCAAGTAGG 57.961 40.000 23.49 9.93 0.00 3.18
1295 1321 8.926715 TTTCTGTAGTATGTACATGCAAGTAG 57.073 34.615 23.49 15.57 0.00 2.57
1296 1322 7.979537 CCTTTCTGTAGTATGTACATGCAAGTA 59.020 37.037 23.49 10.42 0.00 2.24
1297 1323 6.818644 CCTTTCTGTAGTATGTACATGCAAGT 59.181 38.462 23.49 8.00 0.00 3.16
1298 1324 6.258727 CCCTTTCTGTAGTATGTACATGCAAG 59.741 42.308 23.49 17.18 0.00 4.01
1299 1325 6.070481 TCCCTTTCTGTAGTATGTACATGCAA 60.070 38.462 23.49 7.92 0.00 4.08
1314 1340 4.410099 TCTCATGCATTTTCCCTTTCTGT 58.590 39.130 0.00 0.00 0.00 3.41
1341 1367 4.304048 TCCATATATGCATGCATGTGGA 57.696 40.909 35.57 35.57 39.31 4.02
1343 1369 4.573201 TCGATCCATATATGCATGCATGTG 59.427 41.667 37.43 29.75 37.82 3.21
1344 1370 4.773013 TCGATCCATATATGCATGCATGT 58.227 39.130 37.43 33.30 37.82 3.21
1347 1380 5.026038 TCATCGATCCATATATGCATGCA 57.974 39.130 25.04 25.04 0.00 3.96
1379 1412 5.370880 AGGATAAGCTTCAGACCACCATATT 59.629 40.000 0.00 0.00 0.00 1.28
1462 1498 2.626266 CAGGCACCATATGAATGCATGT 59.374 45.455 25.75 13.01 44.01 3.21
1518 1755 0.683973 CTAGCCAGCTCGATCCCAAT 59.316 55.000 0.00 0.00 0.00 3.16
1538 1775 1.133761 TGGCTACTGGCTACTCGATCT 60.134 52.381 0.00 0.00 41.46 2.75
1539 1776 1.319541 TGGCTACTGGCTACTCGATC 58.680 55.000 0.00 0.00 41.46 3.69
1541 1778 1.032794 CATGGCTACTGGCTACTCGA 58.967 55.000 0.00 0.00 41.46 4.04
1542 1779 0.747255 ACATGGCTACTGGCTACTCG 59.253 55.000 0.00 0.00 41.46 4.18
1631 1877 0.883833 GATTTGGTGTGTGCTCCTGG 59.116 55.000 0.00 0.00 0.00 4.45
1634 1880 1.896220 TGAGATTTGGTGTGTGCTCC 58.104 50.000 0.00 0.00 0.00 4.70
1649 1895 8.203937 TCACTTCGTTTTCAAGTAATTTGAGA 57.796 30.769 0.00 0.00 46.01 3.27
1650 1896 9.107367 GATCACTTCGTTTTCAAGTAATTTGAG 57.893 33.333 0.00 0.00 46.01 3.02
1652 1898 7.918160 CGATCACTTCGTTTTCAAGTAATTTG 58.082 34.615 0.00 0.00 43.01 2.32
1679 1928 0.108424 GGAGTAGCTCACACTGCTGG 60.108 60.000 0.00 0.00 41.32 4.85
1684 1933 0.681564 CCGAGGGAGTAGCTCACACT 60.682 60.000 0.00 0.00 36.16 3.55
1693 1942 3.839490 TGTATTTTGGAACCGAGGGAGTA 59.161 43.478 0.00 0.00 0.00 2.59
1694 1943 2.640826 TGTATTTTGGAACCGAGGGAGT 59.359 45.455 0.00 0.00 0.00 3.85
1695 1944 3.343941 TGTATTTTGGAACCGAGGGAG 57.656 47.619 0.00 0.00 0.00 4.30
1696 1945 3.264706 TCATGTATTTTGGAACCGAGGGA 59.735 43.478 0.00 0.00 0.00 4.20
1697 1946 3.616219 TCATGTATTTTGGAACCGAGGG 58.384 45.455 0.00 0.00 0.00 4.30
1698 1947 4.275936 GGATCATGTATTTTGGAACCGAGG 59.724 45.833 0.00 0.00 0.00 4.63
1699 1948 4.881273 TGGATCATGTATTTTGGAACCGAG 59.119 41.667 0.00 0.00 0.00 4.63
1700 1949 4.849518 TGGATCATGTATTTTGGAACCGA 58.150 39.130 0.00 0.00 0.00 4.69
1701 1950 5.125417 AGTTGGATCATGTATTTTGGAACCG 59.875 40.000 0.00 0.00 0.00 4.44
1702 1951 6.530019 AGTTGGATCATGTATTTTGGAACC 57.470 37.500 0.00 0.00 0.00 3.62
1703 1952 7.872483 ACAAAGTTGGATCATGTATTTTGGAAC 59.128 33.333 0.00 0.00 0.00 3.62
1704 1953 7.961351 ACAAAGTTGGATCATGTATTTTGGAA 58.039 30.769 0.00 0.00 0.00 3.53
1705 1954 7.537596 ACAAAGTTGGATCATGTATTTTGGA 57.462 32.000 0.00 0.00 0.00 3.53
1706 1955 8.522830 AGTACAAAGTTGGATCATGTATTTTGG 58.477 33.333 0.00 0.00 0.00 3.28
1711 1960 9.959721 ACTTTAGTACAAAGTTGGATCATGTAT 57.040 29.630 14.04 0.00 37.18 2.29
1712 1961 9.787435 AACTTTAGTACAAAGTTGGATCATGTA 57.213 29.630 23.48 0.00 45.58 2.29
1713 1962 8.691661 AACTTTAGTACAAAGTTGGATCATGT 57.308 30.769 23.48 7.33 45.58 3.21
1729 1978 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
1730 1979 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
1731 1980 8.504005 CATGACCCAACTTTGTACTAACTTTAG 58.496 37.037 0.00 0.00 36.82 1.85
1732 1981 7.994334 ACATGACCCAACTTTGTACTAACTTTA 59.006 33.333 0.00 0.00 0.00 1.85
1733 1982 6.831868 ACATGACCCAACTTTGTACTAACTTT 59.168 34.615 0.00 0.00 0.00 2.66
1734 1983 6.362248 ACATGACCCAACTTTGTACTAACTT 58.638 36.000 0.00 0.00 0.00 2.66
1735 1984 5.937111 ACATGACCCAACTTTGTACTAACT 58.063 37.500 0.00 0.00 0.00 2.24
1736 1985 7.916914 ATACATGACCCAACTTTGTACTAAC 57.083 36.000 0.00 0.00 0.00 2.34
1737 1986 8.927675 AAATACATGACCCAACTTTGTACTAA 57.072 30.769 0.00 0.00 0.00 2.24
1738 1987 8.788806 CAAAATACATGACCCAACTTTGTACTA 58.211 33.333 0.00 0.00 0.00 1.82
1739 1988 7.255801 CCAAAATACATGACCCAACTTTGTACT 60.256 37.037 0.00 0.00 0.00 2.73
1740 1989 6.866248 CCAAAATACATGACCCAACTTTGTAC 59.134 38.462 0.00 0.00 0.00 2.90
1741 1990 6.778069 TCCAAAATACATGACCCAACTTTGTA 59.222 34.615 0.00 0.00 0.00 2.41
1742 1991 5.600484 TCCAAAATACATGACCCAACTTTGT 59.400 36.000 0.00 0.00 0.00 2.83
1743 1992 6.095432 TCCAAAATACATGACCCAACTTTG 57.905 37.500 0.00 0.00 0.00 2.77
1744 1993 6.521162 GTTCCAAAATACATGACCCAACTTT 58.479 36.000 0.00 0.00 0.00 2.66
1745 1994 5.278758 CGTTCCAAAATACATGACCCAACTT 60.279 40.000 0.00 0.00 0.00 2.66
1746 1995 4.217550 CGTTCCAAAATACATGACCCAACT 59.782 41.667 0.00 0.00 0.00 3.16
1747 1996 4.481463 CGTTCCAAAATACATGACCCAAC 58.519 43.478 0.00 0.00 0.00 3.77
1748 1997 3.508012 CCGTTCCAAAATACATGACCCAA 59.492 43.478 0.00 0.00 0.00 4.12
1749 1998 3.085533 CCGTTCCAAAATACATGACCCA 58.914 45.455 0.00 0.00 0.00 4.51
1750 1999 3.349022 TCCGTTCCAAAATACATGACCC 58.651 45.455 0.00 0.00 0.00 4.46
1751 2000 3.377172 CCTCCGTTCCAAAATACATGACC 59.623 47.826 0.00 0.00 0.00 4.02
1752 2001 3.377172 CCCTCCGTTCCAAAATACATGAC 59.623 47.826 0.00 0.00 0.00 3.06
1753 2002 3.264706 TCCCTCCGTTCCAAAATACATGA 59.735 43.478 0.00 0.00 0.00 3.07
1754 2003 3.616219 TCCCTCCGTTCCAAAATACATG 58.384 45.455 0.00 0.00 0.00 3.21
1755 2004 3.265995 ACTCCCTCCGTTCCAAAATACAT 59.734 43.478 0.00 0.00 0.00 2.29
1756 2005 2.640826 ACTCCCTCCGTTCCAAAATACA 59.359 45.455 0.00 0.00 0.00 2.29
1757 2006 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
1758 2007 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
1759 2008 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
1760 2009 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
1761 2010 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
1762 2011 1.621814 CTTGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
1763 2012 1.263356 CTTGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
1764 2013 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
1765 2014 1.264295 ACCTTGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
1766 2015 2.225217 ACTACCTTGTACTCCCTCCGTT 60.225 50.000 0.00 0.00 0.00 4.44
1767 2016 1.357079 ACTACCTTGTACTCCCTCCGT 59.643 52.381 0.00 0.00 0.00 4.69
1768 2017 2.140839 ACTACCTTGTACTCCCTCCG 57.859 55.000 0.00 0.00 0.00 4.63
1769 2018 4.544683 ACATACTACCTTGTACTCCCTCC 58.455 47.826 0.00 0.00 0.00 4.30
1770 2019 5.534278 GGTACATACTACCTTGTACTCCCTC 59.466 48.000 11.63 0.00 44.80 4.30
1771 2020 5.195349 AGGTACATACTACCTTGTACTCCCT 59.805 44.000 11.63 0.62 45.06 4.20
1772 2021 5.453158 AGGTACATACTACCTTGTACTCCC 58.547 45.833 11.63 0.00 45.06 4.30
1803 2056 3.910648 ACGTACTAGCTCCTGTCAAAAC 58.089 45.455 0.00 0.00 0.00 2.43
1828 2081 2.489722 TCGATCTCTATCTGGCATTCGG 59.510 50.000 0.00 0.00 0.00 4.30
1829 2082 3.839051 TCGATCTCTATCTGGCATTCG 57.161 47.619 0.00 0.00 0.00 3.34
1836 2089 4.621886 CACATGTGCATCGATCTCTATCTG 59.378 45.833 13.94 0.00 0.00 2.90
1852 2105 1.005662 GCACGATCGATGTCACATGTG 60.006 52.381 24.34 20.18 0.00 3.21
1853 2106 1.280982 GCACGATCGATGTCACATGT 58.719 50.000 24.34 0.00 0.00 3.21
1894 2147 8.499967 TCATTTTAGCGCGCTAATAATCAATTA 58.500 29.630 43.59 29.63 38.20 1.40
1895 2148 7.359595 TCATTTTAGCGCGCTAATAATCAATT 58.640 30.769 43.59 25.38 38.20 2.32
1897 2150 6.293713 TCATTTTAGCGCGCTAATAATCAA 57.706 33.333 43.59 35.01 38.20 2.57
1899 2152 7.584123 CCATATCATTTTAGCGCGCTAATAATC 59.416 37.037 43.59 11.17 38.20 1.75
1904 2157 3.435327 CCCATATCATTTTAGCGCGCTAA 59.565 43.478 41.25 41.25 36.81 3.09
1905 2158 3.000041 CCCATATCATTTTAGCGCGCTA 59.000 45.455 35.48 35.48 0.00 4.26
1906 2159 1.806542 CCCATATCATTTTAGCGCGCT 59.193 47.619 38.01 38.01 0.00 5.92
1907 2160 1.804151 TCCCATATCATTTTAGCGCGC 59.196 47.619 26.66 26.66 0.00 6.86
1909 2162 3.189287 CCACTCCCATATCATTTTAGCGC 59.811 47.826 0.00 0.00 0.00 5.92
1910 2163 4.214119 CACCACTCCCATATCATTTTAGCG 59.786 45.833 0.00 0.00 0.00 4.26
1911 2164 5.376625 TCACCACTCCCATATCATTTTAGC 58.623 41.667 0.00 0.00 0.00 3.09
1914 2167 8.837099 TTAAATCACCACTCCCATATCATTTT 57.163 30.769 0.00 0.00 0.00 1.82
2057 2355 5.925969 CACCATGGTTTTACAATTTCCAGTC 59.074 40.000 16.84 0.00 0.00 3.51
2080 2378 9.093970 ACGTTTATTCTTCGATGACATATTTCA 57.906 29.630 0.00 0.00 0.00 2.69
2103 2401 1.301716 GGTCACCAGCATGTCACGT 60.302 57.895 0.00 0.00 0.00 4.49
2104 2402 0.246360 TAGGTCACCAGCATGTCACG 59.754 55.000 0.00 0.00 0.00 4.35
2204 2607 4.640201 ACCATTCATTTGTTCCGACCATAG 59.360 41.667 0.00 0.00 0.00 2.23
2210 2615 3.433306 AGGACCATTCATTTGTTCCGA 57.567 42.857 0.00 0.00 0.00 4.55
2241 2646 7.666063 ACATGGCATGAGCTATATAGTATGA 57.334 36.000 32.74 4.23 40.28 2.15
2245 2650 6.537355 ACAAACATGGCATGAGCTATATAGT 58.463 36.000 32.74 14.01 40.28 2.12
2246 2651 7.201470 CGTACAAACATGGCATGAGCTATATAG 60.201 40.741 32.74 12.30 40.28 1.31
2247 2652 6.589907 CGTACAAACATGGCATGAGCTATATA 59.410 38.462 32.74 12.55 40.28 0.86
2369 2774 6.214191 ACCTCTGCATATACTGATATTCGG 57.786 41.667 0.00 0.00 0.00 4.30
2370 2775 5.968261 CGACCTCTGCATATACTGATATTCG 59.032 44.000 0.00 0.00 0.00 3.34
2616 3023 1.459450 TTGAATCCAACGCTTAGGGC 58.541 50.000 0.00 0.00 37.64 5.19
2883 3292 8.011673 CGTTGATTACATTCTTACTATGCATGG 58.988 37.037 10.16 9.41 0.00 3.66
3021 3457 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3022 3458 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3023 3459 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3024 3460 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3025 3461 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3026 3462 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3027 3463 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3042 3478 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
3043 3479 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
3044 3480 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
3045 3481 8.254508 AGTTCATAGTGGAATCTCTACAAAGAC 58.745 37.037 0.00 0.00 29.47 3.01
3046 3482 8.367660 AGTTCATAGTGGAATCTCTACAAAGA 57.632 34.615 0.00 0.00 29.47 2.52
3047 3483 9.522804 GTAGTTCATAGTGGAATCTCTACAAAG 57.477 37.037 0.00 0.00 30.38 2.77
3048 3484 9.031537 TGTAGTTCATAGTGGAATCTCTACAAA 57.968 33.333 0.00 0.00 34.07 2.83
3049 3485 8.589701 TGTAGTTCATAGTGGAATCTCTACAA 57.410 34.615 0.00 0.00 34.07 2.41
3050 3486 8.768501 ATGTAGTTCATAGTGGAATCTCTACA 57.231 34.615 0.00 0.00 37.82 2.74
3052 3488 9.000486 CGTATGTAGTTCATAGTGGAATCTCTA 58.000 37.037 0.00 0.00 39.36 2.43
3053 3489 7.040340 CCGTATGTAGTTCATAGTGGAATCTCT 60.040 40.741 3.20 0.00 39.36 3.10
3054 3490 7.040617 TCCGTATGTAGTTCATAGTGGAATCTC 60.041 40.741 7.73 0.00 39.60 2.75
3055 3491 6.776116 TCCGTATGTAGTTCATAGTGGAATCT 59.224 38.462 7.73 0.00 39.60 2.40
3056 3492 6.978338 TCCGTATGTAGTTCATAGTGGAATC 58.022 40.000 7.73 0.00 39.60 2.52
3057 3493 6.550108 ACTCCGTATGTAGTTCATAGTGGAAT 59.450 38.462 10.20 1.26 40.80 3.01
3058 3494 5.889853 ACTCCGTATGTAGTTCATAGTGGAA 59.110 40.000 10.20 0.00 40.80 3.53
3059 3495 5.443283 ACTCCGTATGTAGTTCATAGTGGA 58.557 41.667 9.16 9.16 39.94 4.02
3060 3496 5.769484 ACTCCGTATGTAGTTCATAGTGG 57.231 43.478 2.99 2.99 39.36 4.00
3061 3497 9.745880 ATTTTACTCCGTATGTAGTTCATAGTG 57.254 33.333 0.00 0.00 39.36 2.74
3062 3498 9.745880 CATTTTACTCCGTATGTAGTTCATAGT 57.254 33.333 0.00 0.00 39.36 2.12
3063 3499 9.961265 TCATTTTACTCCGTATGTAGTTCATAG 57.039 33.333 0.00 0.00 39.36 2.23
3064 3500 9.961265 CTCATTTTACTCCGTATGTAGTTCATA 57.039 33.333 0.00 0.00 37.91 2.15
3065 3501 8.475639 ACTCATTTTACTCCGTATGTAGTTCAT 58.524 33.333 0.00 0.00 40.25 2.57
3066 3502 7.758076 CACTCATTTTACTCCGTATGTAGTTCA 59.242 37.037 0.00 0.00 0.00 3.18
3067 3503 7.972277 TCACTCATTTTACTCCGTATGTAGTTC 59.028 37.037 0.00 0.00 0.00 3.01
3068 3504 7.833786 TCACTCATTTTACTCCGTATGTAGTT 58.166 34.615 0.00 0.00 0.00 2.24
3069 3505 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
3070 3506 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
3071 3507 9.661563 AAATTCACTCATTTTACTCCGTATGTA 57.338 29.630 0.00 0.00 0.00 2.29
3072 3508 8.561738 AAATTCACTCATTTTACTCCGTATGT 57.438 30.769 0.00 0.00 0.00 2.29
3073 3509 9.916397 GTAAATTCACTCATTTTACTCCGTATG 57.084 33.333 0.00 0.00 34.51 2.39
3074 3510 9.661563 TGTAAATTCACTCATTTTACTCCGTAT 57.338 29.630 0.00 0.00 36.96 3.06
3075 3511 8.928733 GTGTAAATTCACTCATTTTACTCCGTA 58.071 33.333 0.00 0.00 36.96 4.02
3076 3512 7.660208 AGTGTAAATTCACTCATTTTACTCCGT 59.340 33.333 0.00 0.00 44.07 4.69
3077 3513 8.029642 AGTGTAAATTCACTCATTTTACTCCG 57.970 34.615 0.00 0.00 44.07 4.63
3108 3544 9.642343 ACCACATACGGATGTATATAGATGTAT 57.358 33.333 14.23 0.00 44.82 2.29
3109 3545 9.470399 AACCACATACGGATGTATATAGATGTA 57.530 33.333 14.23 0.00 44.82 2.29
3110 3546 7.956328 ACCACATACGGATGTATATAGATGT 57.044 36.000 14.23 0.00 44.82 3.06
3117 3553 8.525316 CCACTATAAACCACATACGGATGTATA 58.475 37.037 14.23 6.48 44.82 1.47
3118 3554 7.233962 TCCACTATAAACCACATACGGATGTAT 59.766 37.037 14.23 5.54 44.82 2.29
3119 3555 6.550481 TCCACTATAAACCACATACGGATGTA 59.450 38.462 14.23 0.00 44.82 2.29
3121 3557 5.849510 TCCACTATAAACCACATACGGATG 58.150 41.667 5.94 5.94 39.16 3.51
3122 3558 6.488769 TTCCACTATAAACCACATACGGAT 57.511 37.500 0.00 0.00 0.00 4.18
3123 3559 5.936187 TTCCACTATAAACCACATACGGA 57.064 39.130 0.00 0.00 0.00 4.69
3124 3560 6.522054 AGATTCCACTATAAACCACATACGG 58.478 40.000 0.00 0.00 0.00 4.02
3125 3561 7.434492 AGAGATTCCACTATAAACCACATACG 58.566 38.462 0.00 0.00 0.00 3.06
3126 3562 9.915629 CTAGAGATTCCACTATAAACCACATAC 57.084 37.037 0.00 0.00 0.00 2.39
3127 3563 9.877222 TCTAGAGATTCCACTATAAACCACATA 57.123 33.333 0.00 0.00 0.00 2.29
3128 3564 8.783660 TCTAGAGATTCCACTATAAACCACAT 57.216 34.615 0.00 0.00 0.00 3.21
3129 3565 8.603898 TTCTAGAGATTCCACTATAAACCACA 57.396 34.615 0.00 0.00 0.00 4.17
3130 3566 9.535878 CTTTCTAGAGATTCCACTATAAACCAC 57.464 37.037 0.00 0.00 0.00 4.16
3131 3567 9.488762 TCTTTCTAGAGATTCCACTATAAACCA 57.511 33.333 0.00 0.00 0.00 3.67
3132 3568 9.752961 GTCTTTCTAGAGATTCCACTATAAACC 57.247 37.037 0.00 0.00 0.00 3.27
3151 3587 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
3152 3588 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3153 3589 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3154 3590 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3155 3591 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3156 3592 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3157 3593 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3158 3594 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3159 3595 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3160 3596 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3161 3597 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3162 3598 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3163 3599 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3164 3600 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3165 3601 3.267812 TCTTCTACTCCCTCCGTTCCTAA 59.732 47.826 0.00 0.00 0.00 2.69
3166 3602 2.848694 TCTTCTACTCCCTCCGTTCCTA 59.151 50.000 0.00 0.00 0.00 2.94
3167 3603 1.639628 TCTTCTACTCCCTCCGTTCCT 59.360 52.381 0.00 0.00 0.00 3.36
3168 3604 2.140839 TCTTCTACTCCCTCCGTTCC 57.859 55.000 0.00 0.00 0.00 3.62
3169 3605 4.218852 CCATATCTTCTACTCCCTCCGTTC 59.781 50.000 0.00 0.00 0.00 3.95
3170 3606 4.140994 TCCATATCTTCTACTCCCTCCGTT 60.141 45.833 0.00 0.00 0.00 4.44
3171 3607 3.398292 TCCATATCTTCTACTCCCTCCGT 59.602 47.826 0.00 0.00 0.00 4.69
3172 3608 3.759618 GTCCATATCTTCTACTCCCTCCG 59.240 52.174 0.00 0.00 0.00 4.63
3173 3609 4.090819 GGTCCATATCTTCTACTCCCTCC 58.909 52.174 0.00 0.00 0.00 4.30
3174 3610 4.742012 TGGTCCATATCTTCTACTCCCTC 58.258 47.826 0.00 0.00 0.00 4.30
3175 3611 4.834406 TGGTCCATATCTTCTACTCCCT 57.166 45.455 0.00 0.00 0.00 4.20
3176 3612 4.902448 ACTTGGTCCATATCTTCTACTCCC 59.098 45.833 0.00 0.00 0.00 4.30
3177 3613 6.487299 AACTTGGTCCATATCTTCTACTCC 57.513 41.667 0.00 0.00 0.00 3.85
3178 3614 7.556844 TGAAACTTGGTCCATATCTTCTACTC 58.443 38.462 0.00 0.00 0.00 2.59
3179 3615 7.496346 TGAAACTTGGTCCATATCTTCTACT 57.504 36.000 0.00 0.00 0.00 2.57
3180 3616 9.262358 GTATGAAACTTGGTCCATATCTTCTAC 57.738 37.037 0.00 0.00 0.00 2.59
3195 3662 8.032952 TCACTAGCATTTCTGTATGAAACTTG 57.967 34.615 0.00 0.00 46.08 3.16
3253 3720 6.432162 AGCTCTCATAACTTTTGAGATTTGCA 59.568 34.615 16.91 0.00 46.26 4.08
3259 3726 7.663081 ACATTCAAGCTCTCATAACTTTTGAGA 59.337 33.333 10.45 10.45 45.53 3.27
3321 3838 8.572151 CCGCAGACAAAATTAAAACTAAATACG 58.428 33.333 0.00 0.00 0.00 3.06
3400 3923 7.665145 TGTGTGTTCCAATGATTCTTAATCTCA 59.335 33.333 1.70 0.00 38.72 3.27
3544 4067 4.323417 TGTTGGACTTGCATTCTATCGTT 58.677 39.130 0.00 0.00 0.00 3.85
3625 4148 3.753434 CTGGACTCGCTGCCGACT 61.753 66.667 0.00 0.00 38.82 4.18
3662 4185 1.332552 CGTAGTGTTGTCGGTGTTTGC 60.333 52.381 0.00 0.00 0.00 3.68
3755 4278 0.249120 TCTTCGACGATGCCAATGGT 59.751 50.000 0.00 0.00 0.00 3.55
3913 4436 1.592669 GTCGACCATGGAGGCATCG 60.593 63.158 21.47 16.98 43.14 3.84
3967 4490 5.532406 TCTTCAGTTGTTTGCAAGCTAGATT 59.468 36.000 14.67 0.00 34.94 2.40
4086 4619 7.434307 CACATAACACTATTCTACACCTTACCG 59.566 40.741 0.00 0.00 0.00 4.02
4114 4648 4.044065 TGACCTTTGAGGGACAAATATGGT 59.956 41.667 0.00 0.00 45.63 3.55
4411 5020 8.964476 TGAGAAATCTACATCCAGTTTAATCC 57.036 34.615 0.00 0.00 0.00 3.01
4506 5122 7.426606 TCATACTACCAGCCAAATAACTACA 57.573 36.000 0.00 0.00 0.00 2.74
4577 5193 6.030228 GCATAGCAGACAGTTAAAAATCCAC 58.970 40.000 0.00 0.00 0.00 4.02
4589 5205 2.745821 ACAACACATGCATAGCAGACAG 59.254 45.455 0.00 0.00 43.65 3.51
4593 5209 1.471287 AGCACAACACATGCATAGCAG 59.529 47.619 0.00 0.00 45.92 4.24
4649 5265 5.870433 TCAACAGCCTTGCATTGATAAAATG 59.130 36.000 0.00 0.00 33.29 2.32
4665 5281 0.961019 TGCAATGAACCTCAACAGCC 59.039 50.000 0.00 0.00 0.00 4.85
4667 5283 3.996150 AACTGCAATGAACCTCAACAG 57.004 42.857 0.00 0.00 34.27 3.16
4699 5315 7.852971 TGCAAATAGTTAACTACCCATACAC 57.147 36.000 17.45 3.57 0.00 2.90
4834 5450 8.773404 AAAGTACTTCATTAAATAGCGAGTGT 57.227 30.769 8.95 0.00 0.00 3.55
4868 5487 5.138125 TCAATGAATTGCCTCAACTTTCC 57.862 39.130 0.00 0.00 37.68 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.