AutoCloner

Multiple sequence alignment - TraesCS5B01G320600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G320600	chr5B	100.000	1944	0	0	1789	3732	506205656	506207599	0.000000e+00	3591.0
1	TraesCS5B01G320600	chr5B	100.000	1257	0	0	1	1257	506203868	506205124	0.000000e+00	2322.0
2	TraesCS5B01G320600	chr5A	91.240	1701	71	15	1807	3481	533343749	533345397	0.000000e+00	2244.0
3	TraesCS5B01G320600	chr5A	91.892	259	18	3	3476	3732	533345806	533346063	3.540000e-95	359.0
4	TraesCS5B01G320600	chr5A	88.764	178	16	4	1	175	533342508	533342684	8.120000e-52	215.0
5	TraesCS5B01G320600	chr5A	88.991	109	7	3	744	852	533343246	533343349	3.020000e-26	130.0
6	TraesCS5B01G320600	chr5A	92.157	51	4	0	3	53	616638797	616638847	5.170000e-09	73.1
7	TraesCS5B01G320600	chr5D	93.648	1165	46	2	1789	2952	418583317	418584454	0.000000e+00	1716.0
8	TraesCS5B01G320600	chr5D	91.202	682	41	9	3002	3666	418584456	418585135	0.000000e+00	909.0
9	TraesCS5B01G320600	chr5D	85.749	821	89	18	100	916	418581844	418582640	0.000000e+00	843.0
10	TraesCS5B01G320600	chr5D	95.225	356	12	5	905	1257	418582955	418583308	3.260000e-155	558.0
11	TraesCS5B01G320600	chr4A	88.889	540	50	4	1789	2328	244491979	244491450	0.000000e+00	656.0
12	TraesCS5B01G320600	chr4A	74.206	504	89	27	317	790	5704205	5704697	4.960000e-39	172.0
13	TraesCS5B01G320600	chr4A	74.224	322	60	14	2	304	86932780	86933097	3.050000e-21	113.0
14	TraesCS5B01G320600	chr7A	93.814	194	12	0	1789	1982	90433621	90433814	3.650000e-75	292.0
15	TraesCS5B01G320600	chr7A	77.404	208	34	12	589	790	66676349	66676549	1.100000e-20	111.0
16	TraesCS5B01G320600	chr2A	92.268	194	15	0	1789	1982	33589859	33589666	3.670000e-70	276.0
17	TraesCS5B01G320600	chr7B	75.146	684	99	48	3	622	15929639	15928963	4.780000e-64	255.0
18	TraesCS5B01G320600	chr3B	97.458	118	3	0	1789	1906	602440161	602440044	6.320000e-48	202.0
19	TraesCS5B01G320600	chr3B	98.230	113	2	0	1789	1901	605678965	605679077	8.180000e-47	198.0
20	TraesCS5B01G320600	chr3B	94.068	118	7	0	1789	1906	99537738	99537855	2.960000e-41	180.0
21	TraesCS5B01G320600	chr3B	84.058	69	11	0	2	70	118507078	118507146	2.410000e-07	67.6
22	TraesCS5B01G320600	chr1B	95.763	118	5	0	1789	1906	223788357	223788240	1.370000e-44	191.0
23	TraesCS5B01G320600	chr1B	95.763	118	5	0	1789	1906	679125579	679125696	1.370000e-44	191.0
24	TraesCS5B01G320600	chr1B	80.392	153	22	6	296	443	137176320	137176171	3.940000e-20	110.0
25	TraesCS5B01G320600	chr7D	81.340	209	25	12	589	790	63706521	63706722	1.390000e-34	158.0
26	TraesCS5B01G320600	chr7D	77.273	286	42	17	521	791	54053798	54053521	3.000000e-31	147.0
27	TraesCS5B01G320600	chr7D	78.090	178	30	8	1	173	246365723	246365896	1.830000e-18	104.0
28	TraesCS5B01G320600	chr7D	81.538	130	17	6	328	453	600935322	600935196	2.370000e-17	100.0
29	TraesCS5B01G320600	chr4D	75.229	327	52	23	2	304	21700338	21700017	1.090000e-25	128.0
30	TraesCS5B01G320600	chr2D	79.235	183	28	9	613	791	5317360	5317536	6.550000e-23	119.0
31	TraesCS5B01G320600	chr6B	77.387	199	35	9	580	775	603893364	603893173	3.940000e-20	110.0
32	TraesCS5B01G320600	chr1D	80.292	137	23	4	656	790	261095287	261095153	2.370000e-17	100.0
33	TraesCS5B01G320600	chr3D	91.045	67	6	0	2	68	73206674	73206740	1.430000e-14	91.6
34	TraesCS5B01G320600	chr2B	76.437	174	31	9	600	767	144246422	144246591	6.640000e-13	86.1
35	TraesCS5B01G320600	chr6D	83.146	89	13	2	2	89	301049611	301049698	3.090000e-11	80.5
36	TraesCS5B01G320600	chr6A	77.358	106	20	4	2	103	609442815	609442710	4.030000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G320600	chr5B	506203868	506207599	3731	False	2956.5	3591	100.00000	1	3732	2	chr5B.!!$F1	3731
1	TraesCS5B01G320600	chr5A	533342508	533346063	3555	False	737.0	2244	90.22175	1	3732	4	chr5A.!!$F2	3731
2	TraesCS5B01G320600	chr5D	418581844	418585135	3291	False	1006.5	1716	91.45600	100	3666	4	chr5D.!!$F1	3566
3	TraesCS5B01G320600	chr4A	244491450	244491979	529	True	656.0	656	88.88900	1789	2328	1	chr4A.!!$R1	539
4	TraesCS5B01G320600	chr7B	15928963	15929639	676	True	255.0	255	75.14600	3	622	1	chr7B.!!$R1	619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
986	1417	1.004277	CGTTAGAGATCCGCGGCATC	61.004	60.0	23.51	22.76	0.0	3.91	F
1147	1578	0.686112	CCTCCACTCACTCCTCCTCC	60.686	65.0	0.00	0.00	0.0	4.30	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2145	2576	0.037326	AAGCATTTCGTCGAGCAGGA	60.037	50.0	7.58	0.0	0.00	3.86	R
2873	3305	0.250945	TATGCCTTTGCGGTCCACAA	60.251	50.0	0.00	0.0	41.78	3.33	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
94	98	2.278923	GCTCGCGGAGGCTAGAAC	60.279	66.667	6.13	0.00	34.04	3.01
325	365	8.560576	AAAAGTGTTCGTCATGTATCAAAAAG	57.439	30.769	0.00	0.00	0.00	2.27
776	880	9.337396	TGTAGACATGTGTTGAAGAATAAAAGT	57.663	29.630	1.15	0.00	0.00	2.66
803	907	6.765915	AAGAAAGAAAGACAAGATATGGGC	57.234	37.500	0.00	0.00	0.00	5.36
818	922	1.152881	GGGCAATCTCGAATGGGCT	60.153	57.895	7.93	0.00	0.00	5.19
903	1007	2.159517	CCAAAATAGGCTCACGTTGCTC	60.160	50.000	9.71	1.70	0.00	4.26
928	1357	2.856032	CAACTGACTTCCGCAGCG	59.144	61.111	8.18	8.18	36.86	5.18
978	1409	1.300233	CGCTGCCCGTTAGAGATCC	60.300	63.158	0.00	0.00	0.00	3.36
982	1413	2.335369	CCCGTTAGAGATCCGCGG	59.665	66.667	22.12	22.12	41.82	6.46
986	1417	1.004277	CGTTAGAGATCCGCGGCATC	61.004	60.000	23.51	22.76	0.00	3.91
1053	1484	4.146058	CTGCACAAGCTGGTGACA	57.854	55.556	25.91	19.44	41.32	3.58
1147	1578	0.686112	CCTCCACTCACTCCTCCTCC	60.686	65.000	0.00	0.00	0.00	4.30
1251	1682	3.764466	CCGCTGCTCCTCTCCGTT	61.764	66.667	0.00	0.00	0.00	4.44
2041	2472	3.805307	CTCGCCGTGTCGCTCTCT	61.805	66.667	0.00	0.00	0.00	3.10
2074	2505	3.374402	CGCTCCCTCCACGTGTCT	61.374	66.667	15.65	0.00	0.00	3.41
2077	2508	2.283676	TCCCTCCACGTGTCTCCC	60.284	66.667	15.65	0.00	0.00	4.30
2082	2513	4.415332	CCACGTGTCTCCCGACGG	62.415	72.222	15.65	6.99	43.21	4.79
2145	2576	1.990060	AGGTCCGCACTGCCACTAT	60.990	57.895	0.00	0.00	0.00	2.12
2164	2595	0.037326	TCCTGCTCGACGAAATGCTT	60.037	50.000	8.74	0.00	0.00	3.91
2379	2810	5.306937	AGGTGATTGGTGATATGACGGATAA	59.693	40.000	0.00	0.00	0.00	1.75
2434	2865	0.753479	TGGTGAATGGGTTGTGCGTT	60.753	50.000	0.00	0.00	0.00	4.84
2480	2911	6.841229	AGAGACATACTTGGAAGATATGGTGA	59.159	38.462	0.00	0.00	31.75	4.02
2588	3019	4.322273	GGATGATGAGTCGGATGCTTGATA	60.322	45.833	0.00	0.00	0.00	2.15
2643	3074	6.815641	AGTTCAGTGATCAGCAGTATTTGTAG	59.184	38.462	0.00	0.00	0.00	2.74
2644	3075	5.111989	TCAGTGATCAGCAGTATTTGTAGC	58.888	41.667	0.00	0.00	0.00	3.58
2696	3127	0.786435	AATGCTGAAAGGAAGGGGGT	59.214	50.000	0.00	0.00	38.32	4.95
2740	3171	6.814954	AGGAGTACCTTGTGATGATGTTAT	57.185	37.500	0.00	0.00	45.36	1.89
2789	3220	5.564550	AGCAATCAGTTTGTAGTTCCTCAT	58.435	37.500	0.00	0.00	37.65	2.90
2790	3221	6.711277	AGCAATCAGTTTGTAGTTCCTCATA	58.289	36.000	0.00	0.00	37.65	2.15
2791	3222	7.341805	AGCAATCAGTTTGTAGTTCCTCATAT	58.658	34.615	0.00	0.00	37.65	1.78
2792	3223	7.831193	AGCAATCAGTTTGTAGTTCCTCATATT	59.169	33.333	0.00	0.00	37.65	1.28
2793	3224	8.462016	GCAATCAGTTTGTAGTTCCTCATATTT	58.538	33.333	0.00	0.00	37.65	1.40
2814	3245	5.767816	TTTTTGAAGGCTTGTAGTTCCTC	57.232	39.130	3.46	0.00	0.00	3.71
2815	3246	4.431416	TTTGAAGGCTTGTAGTTCCTCA	57.569	40.909	3.46	0.00	0.00	3.86
2884	3316	1.361993	GTGCAAATTGTGGACCGCA	59.638	52.632	2.83	2.83	42.50	5.69
2976	3408	1.709578	AGATCATCGAAGGGCAGCTA	58.290	50.000	0.00	0.00	0.00	3.32
3045	3477	8.478877	CAGAAAAGATAGTCCCATACTACTTGT	58.521	37.037	0.00	0.00	43.47	3.16
3117	3549	1.131638	AGAGGCTGTCAACCAGTTGA	58.868	50.000	9.12	9.12	46.27	3.18
3152	3599	1.833630	TGCCAAGAGTCCATCCTAGTG	59.166	52.381	0.00	0.00	0.00	2.74
3201	3651	3.873952	GCGTTCTGCTCAAAGGAAGATAT	59.126	43.478	0.00	0.00	41.73	1.63
3219	3669	7.721399	GGAAGATATTGGGGCTATATTATGTGG	59.279	40.741	0.00	0.00	0.00	4.17
3257	3707	2.435234	TACGCAATGGTCGCCACC	60.435	61.111	0.00	0.00	44.10	4.61
3269	3726	2.591715	GCCACCACAGCGAAGTGT	60.592	61.111	6.87	0.00	37.82	3.55
3270	3727	2.896801	GCCACCACAGCGAAGTGTG	61.897	63.158	6.87	6.49	46.32	3.82
3295	3752	5.419788	AATGAAATTAACCTCTGCATGCAGA	59.580	36.000	40.06	40.06	42.27	4.26
3297	3754	7.897332	AATGAAATTAACCTCTGCATGCAGATG	60.897	37.037	42.08	39.11	43.00	2.90
3358	3815	6.537355	AGAGAAACAACATGGATCAAGAGAA	58.463	36.000	0.00	0.00	0.00	2.87
3372	3829	7.087007	GGATCAAGAGAAACAAAAGATGAACC	58.913	38.462	0.00	0.00	0.00	3.62
3400	3857	2.040278	CCCTCCTGCTCCTGGAGT	59.960	66.667	23.92	0.00	44.60	3.85
3421	3878	6.147164	GGAGTCGTTAAACTGAATGTTGATGA	59.853	38.462	0.00	0.00	39.13	2.92
3429	3886	3.181517	ACTGAATGTTGATGATGCGTTCG	60.182	43.478	0.00	0.00	32.52	3.95
3495	4367	0.613853	AATGGCAGCCTCATTGCAGT	60.614	50.000	14.15	0.00	43.28	4.40
3513	4385	3.129287	GCAGTTTGATGTTCCTGGTATGG	59.871	47.826	0.00	0.00	0.00	2.74
3526	4399	1.906574	TGGTATGGTTCCACTCCTGTC	59.093	52.381	12.60	0.00	0.00	3.51
3567	4440	0.035630	GCTTGTGGAGATGGAGCAGT	60.036	55.000	0.00	0.00	33.68	4.40
3589	4462	3.630769	TGCTGATGCCTGAAATCTGAATC	59.369	43.478	0.00	0.00	38.71	2.52
3596	4469	2.749076	CCTGAAATCTGAATCGGTGCAA	59.251	45.455	0.00	0.00	0.00	4.08
3603	4476	2.557924	TCTGAATCGGTGCAAAAATGCT	59.442	40.909	2.22	0.00	35.49	3.79
3610	4483	2.347476	CGGTGCAAAAATGCTTTTCACG	60.347	45.455	2.22	0.00	35.57	4.35
3634	4508	1.498865	CGTTCAGCAGCGGAAACACT	61.499	55.000	9.77	0.00	0.00	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	33	2.610438	TTACACGAGGGTTCCCTACT	57.390	50.000	10.70	0.00	36.43	2.57
76	79	3.528370	TTCTAGCCTCCGCGAGCC	61.528	66.667	8.23	0.00	41.18	4.70
91	95	9.706846	CAAAAACATGAAAAGAAAATGAGGTTC	57.293	29.630	0.00	0.00	0.00	3.62
94	98	8.212317	ACCAAAAACATGAAAAGAAAATGAGG	57.788	30.769	0.00	0.00	0.00	3.86
289	326	9.658475	CATGACGAACACTTTTTCAAATACTTA	57.342	29.630	0.00	0.00	0.00	2.24
304	341	7.298122	ACATCTTTTTGATACATGACGAACAC	58.702	34.615	0.00	0.00	33.36	3.32
309	348	9.986833	TGATTAACATCTTTTTGATACATGACG	57.013	29.630	0.00	0.00	33.36	4.35
456	501	3.998913	TCAGGAGCATATTTGGACACA	57.001	42.857	0.00	0.00	0.00	3.72
457	502	7.201679	GCATATATCAGGAGCATATTTGGACAC	60.202	40.741	0.00	0.00	0.00	3.67
458	503	6.825213	GCATATATCAGGAGCATATTTGGACA	59.175	38.462	0.00	0.00	0.00	4.02
459	504	6.825213	TGCATATATCAGGAGCATATTTGGAC	59.175	38.462	0.00	0.00	0.00	4.02
460	505	6.961042	TGCATATATCAGGAGCATATTTGGA	58.039	36.000	0.00	0.00	0.00	3.53
461	506	7.634671	TTGCATATATCAGGAGCATATTTGG	57.365	36.000	0.00	0.00	34.87	3.28
462	507	9.917129	TTTTTGCATATATCAGGAGCATATTTG	57.083	29.630	0.00	0.00	34.87	2.32
782	886	6.515272	TTGCCCATATCTTGTCTTTCTTTC	57.485	37.500	0.00	0.00	0.00	2.62
783	887	6.894103	AGATTGCCCATATCTTGTCTTTCTTT	59.106	34.615	0.00	0.00	0.00	2.52
793	897	4.330250	CCATTCGAGATTGCCCATATCTT	58.670	43.478	0.00	0.00	32.64	2.40
803	907	1.808945	GCCATAGCCCATTCGAGATTG	59.191	52.381	0.00	0.00	0.00	2.67
903	1007	2.802816	GCGGAAGTCAGTTGCCATATAG	59.197	50.000	0.00	0.00	0.00	1.31
959	1389	1.437986	GATCTCTAACGGGCAGCGT	59.562	57.895	0.00	0.00	0.00	5.07
1135	1566	2.043852	GAGGCGGAGGAGGAGTGA	60.044	66.667	0.00	0.00	0.00	3.41
1137	1568	2.277404	GAGAGGCGGAGGAGGAGT	59.723	66.667	0.00	0.00	0.00	3.85
2041	2472	4.069232	CGCAGGCGGTGGAAGAGA	62.069	66.667	5.63	0.00	35.56	3.10
2074	2505	4.682334	TAGGTGTGGCCGTCGGGA	62.682	66.667	14.38	0.00	43.70	5.14
2077	2508	4.789075	CGGTAGGTGTGGCCGTCG	62.789	72.222	0.00	0.00	43.70	5.12
2082	2513	3.508840	GCATGCGGTAGGTGTGGC	61.509	66.667	0.00	0.00	0.00	5.01
2145	2576	0.037326	AAGCATTTCGTCGAGCAGGA	60.037	50.000	7.58	0.00	0.00	3.86
2411	2842	0.821711	CACAACCCATTCACCACCGT	60.822	55.000	0.00	0.00	0.00	4.83
2434	2865	2.303175	GCCTTGTCAAACAACCCACTA	58.697	47.619	0.00	0.00	33.96	2.74
2480	2911	7.308951	CGAAAAATGTGGTACAATCCCTTTACT	60.309	37.037	0.00	0.00	44.16	2.24
2588	3019	0.632835	ACATGTGGAGGCATCCCAAT	59.367	50.000	16.13	5.47	46.04	3.16
2643	3074	1.534175	CCTCAACATAGTCCTCGTCGC	60.534	57.143	0.00	0.00	0.00	5.19
2644	3075	1.743958	ACCTCAACATAGTCCTCGTCG	59.256	52.381	0.00	0.00	0.00	5.12
2739	3170	1.073722	CTCTGCCACCACACCACAT	59.926	57.895	0.00	0.00	0.00	3.21
2740	3171	1.418097	ATCTCTGCCACCACACCACA	61.418	55.000	0.00	0.00	0.00	4.17
2792	3223	5.197451	TGAGGAACTACAAGCCTTCAAAAA	58.803	37.500	0.00	0.00	41.55	1.94
2793	3224	4.787551	TGAGGAACTACAAGCCTTCAAAA	58.212	39.130	0.00	0.00	41.55	2.44
2794	3225	4.431416	TGAGGAACTACAAGCCTTCAAA	57.569	40.909	0.00	0.00	41.55	2.69
2795	3226	4.640771	ATGAGGAACTACAAGCCTTCAA	57.359	40.909	0.00	0.00	41.55	2.69
2796	3227	4.640771	AATGAGGAACTACAAGCCTTCA	57.359	40.909	0.00	0.00	41.55	3.02
2797	3228	5.966742	AAAATGAGGAACTACAAGCCTTC	57.033	39.130	0.00	0.00	41.55	3.46
2798	3229	5.011023	CCAAAAATGAGGAACTACAAGCCTT	59.989	40.000	0.00	0.00	41.55	4.35
2799	3230	4.524328	CCAAAAATGAGGAACTACAAGCCT	59.476	41.667	0.00	0.00	41.55	4.58
2800	3231	4.280929	ACCAAAAATGAGGAACTACAAGCC	59.719	41.667	0.00	0.00	41.55	4.35
2801	3232	5.009610	TCACCAAAAATGAGGAACTACAAGC	59.990	40.000	0.00	0.00	41.55	4.01
2802	3233	6.633500	TCACCAAAAATGAGGAACTACAAG	57.367	37.500	0.00	0.00	41.55	3.16
2803	3234	6.775142	TCATCACCAAAAATGAGGAACTACAA	59.225	34.615	0.00	0.00	41.55	2.41
2804	3235	6.303054	TCATCACCAAAAATGAGGAACTACA	58.697	36.000	0.00	0.00	41.55	2.74
2805	3236	6.817765	TCATCACCAAAAATGAGGAACTAC	57.182	37.500	0.00	0.00	41.55	2.73
2810	3241	9.473007	TGTTTATATCATCACCAAAAATGAGGA	57.527	29.630	0.00	0.00	40.79	3.71
2856	3287	2.222213	CACAATTTGCACTGTGCCATTG	59.778	45.455	32.31	32.31	44.23	2.82
2873	3305	0.250945	TATGCCTTTGCGGTCCACAA	60.251	50.000	0.00	0.00	41.78	3.33
3057	3489	1.333619	CACGCCTACTTTGCAGTTTGT	59.666	47.619	0.00	0.00	34.06	2.83
3117	3549	4.914983	TCTTGGCATCTTGATCTTCACTT	58.085	39.130	0.00	0.00	0.00	3.16
3121	3553	3.876320	GGACTCTTGGCATCTTGATCTTC	59.124	47.826	0.00	0.00	0.00	2.87
3152	3599	2.348998	CAGGTCTCCACACCAGGC	59.651	66.667	0.00	0.00	39.16	4.85
3201	3651	4.605813	ACATCCCACATAATATAGCCCCAA	59.394	41.667	0.00	0.00	0.00	4.12
3257	3707	3.607422	TTTCATTCACACTTCGCTGTG	57.393	42.857	6.16	6.16	42.62	3.66
3260	3717	5.473504	AGGTTAATTTCATTCACACTTCGCT	59.526	36.000	0.00	0.00	0.00	4.93
3268	3725	5.517770	GCATGCAGAGGTTAATTTCATTCAC	59.482	40.000	14.21	0.00	0.00	3.18
3269	3726	5.185442	TGCATGCAGAGGTTAATTTCATTCA	59.815	36.000	18.46	0.00	0.00	2.57
3270	3727	5.653507	TGCATGCAGAGGTTAATTTCATTC	58.346	37.500	18.46	0.00	0.00	2.67
3295	3752	0.333993	AGCAACATCTCAAGCCCCAT	59.666	50.000	0.00	0.00	0.00	4.00
3297	3754	1.941999	GCAGCAACATCTCAAGCCCC	61.942	60.000	0.00	0.00	0.00	5.80
3358	3815	5.306678	TGCCATTTAGGGTTCATCTTTTGTT	59.693	36.000	0.00	0.00	38.09	2.83
3372	3829	0.753111	GCAGGAGGGTGCCATTTAGG	60.753	60.000	0.00	0.00	37.49	2.69
3400	3857	6.314018	GCATCATCAACATTCAGTTTAACGA	58.686	36.000	0.00	0.00	38.74	3.85
3421	3878	0.391661	ATCAGTTGCCTCGAACGCAT	60.392	50.000	7.60	0.00	35.83	4.73
3429	3886	1.559682	TCCCTGGTTATCAGTTGCCTC	59.440	52.381	0.00	0.00	41.83	4.70
3495	4367	4.202620	TGGAACCATACCAGGAACATCAAA	60.203	41.667	0.00	0.00	33.22	2.69
3513	4385	1.202486	TCAACACGACAGGAGTGGAAC	60.202	52.381	0.00	0.00	43.41	3.62
3526	4399	0.882042	AGGCTTCAGCAGTCAACACG	60.882	55.000	0.30	0.00	44.36	4.49
3567	4440	2.793288	TCAGATTTCAGGCATCAGCA	57.207	45.000	0.00	0.00	44.61	4.41
3596	4469	3.567670	CGCAAACGTGAAAAGCATTTT	57.432	38.095	0.00	0.00	42.54	1.82
3634	4508	4.152759	GCAGCAGCAAAAATGAAAGCATTA	59.847	37.500	0.00	0.00	41.32	1.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.