Multiple sequence alignment - TraesCS5B01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G320500 chr5B 100.000 5856 0 0 1 5856 505810348 505804493 0.000000e+00 10815
1 TraesCS5B01G320500 chr5B 97.143 280 8 0 31 310 401677491 401677770 1.910000e-129 473
2 TraesCS5B01G320500 chr5A 91.996 4760 205 63 307 4949 533295811 533291111 0.000000e+00 6517
3 TraesCS5B01G320500 chr5D 92.928 2531 118 29 2428 4949 418467038 418464560 0.000000e+00 3626
4 TraesCS5B01G320500 chr5D 93.066 2120 71 32 307 2386 418469126 418467043 0.000000e+00 3031
5 TraesCS5B01G320500 chr5D 88.608 948 67 13 4949 5855 73460679 73461626 0.000000e+00 1114
6 TraesCS5B01G320500 chr5D 85.422 782 81 10 5103 5855 412611543 412612320 0.000000e+00 782
7 TraesCS5B01G320500 chr5D 88.017 242 16 4 4952 5180 73463721 73463962 2.080000e-69 274
8 TraesCS5B01G320500 chr7A 89.841 945 57 11 4950 5855 77711186 77712130 0.000000e+00 1177
9 TraesCS5B01G320500 chr7A 85.669 942 87 16 4950 5853 34039991 34040922 0.000000e+00 948
10 TraesCS5B01G320500 chr7A 84.299 949 101 14 4950 5855 654822866 654823809 0.000000e+00 883
11 TraesCS5B01G320500 chr7A 85.036 822 75 20 4950 5733 249277427 249276616 0.000000e+00 793
12 TraesCS5B01G320500 chr7A 96.786 280 9 0 31 310 651648978 651649257 8.890000e-128 468
13 TraesCS5B01G320500 chr7A 88.571 245 13 7 4950 5180 77730956 77731199 3.450000e-72 283
14 TraesCS5B01G320500 chr2D 88.771 944 67 17 4950 5855 147157248 147156306 0.000000e+00 1120
15 TraesCS5B01G320500 chr2D 88.478 946 68 12 4950 5855 79599185 79598241 0.000000e+00 1105
16 TraesCS5B01G320500 chr2D 89.661 590 47 8 4950 5526 146767959 146767371 0.000000e+00 739
17 TraesCS5B01G320500 chr2D 86.992 246 18 8 4950 5182 146762907 146762663 1.250000e-66 265
18 TraesCS5B01G320500 chr2D 86.992 246 18 8 4950 5182 147152139 147151895 1.250000e-66 265
19 TraesCS5B01G320500 chr4D 85.216 947 94 17 4950 5853 464803220 464804163 0.000000e+00 931
20 TraesCS5B01G320500 chr6B 97.133 279 8 0 31 309 637371773 637372051 6.870000e-129 472
21 TraesCS5B01G320500 chr6A 96.786 280 9 0 31 310 38757815 38758094 8.890000e-128 468
22 TraesCS5B01G320500 chr6A 96.416 279 10 0 29 307 469114112 469114390 1.490000e-125 460
23 TraesCS5B01G320500 chr3A 96.774 279 9 0 31 309 481022847 481022569 3.200000e-127 466
24 TraesCS5B01G320500 chr3B 95.819 287 10 2 25 310 423737494 423737209 4.130000e-126 462
25 TraesCS5B01G320500 chr3B 94.898 294 12 3 23 315 679723498 679723207 1.920000e-124 457
26 TraesCS5B01G320500 chr2A 95.205 292 10 4 23 314 715378721 715379008 5.350000e-125 459
27 TraesCS5B01G320500 chr2A 86.626 329 42 1 5527 5853 605278839 605278511 4.310000e-96 363
28 TraesCS5B01G320500 chr4B 82.540 252 20 14 4950 5180 467795938 467796186 3.580000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G320500 chr5B 505804493 505810348 5855 True 10815.0 10815 100.0000 1 5856 1 chr5B.!!$R1 5855
1 TraesCS5B01G320500 chr5A 533291111 533295811 4700 True 6517.0 6517 91.9960 307 4949 1 chr5A.!!$R1 4642
2 TraesCS5B01G320500 chr5D 418464560 418469126 4566 True 3328.5 3626 92.9970 307 4949 2 chr5D.!!$R1 4642
3 TraesCS5B01G320500 chr5D 412611543 412612320 777 False 782.0 782 85.4220 5103 5855 1 chr5D.!!$F1 752
4 TraesCS5B01G320500 chr5D 73460679 73463962 3283 False 694.0 1114 88.3125 4949 5855 2 chr5D.!!$F2 906
5 TraesCS5B01G320500 chr7A 77711186 77712130 944 False 1177.0 1177 89.8410 4950 5855 1 chr7A.!!$F2 905
6 TraesCS5B01G320500 chr7A 34039991 34040922 931 False 948.0 948 85.6690 4950 5853 1 chr7A.!!$F1 903
7 TraesCS5B01G320500 chr7A 654822866 654823809 943 False 883.0 883 84.2990 4950 5855 1 chr7A.!!$F5 905
8 TraesCS5B01G320500 chr7A 249276616 249277427 811 True 793.0 793 85.0360 4950 5733 1 chr7A.!!$R1 783
9 TraesCS5B01G320500 chr2D 147156306 147157248 942 True 1120.0 1120 88.7710 4950 5855 1 chr2D.!!$R5 905
10 TraesCS5B01G320500 chr2D 79598241 79599185 944 True 1105.0 1105 88.4780 4950 5855 1 chr2D.!!$R1 905
11 TraesCS5B01G320500 chr2D 146767371 146767959 588 True 739.0 739 89.6610 4950 5526 1 chr2D.!!$R3 576
12 TraesCS5B01G320500 chr4D 464803220 464804163 943 False 931.0 931 85.2160 4950 5853 1 chr4D.!!$F1 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.323360 TAAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.0 0.00 5.36 F
308 309 0.331278 CCCCATTGTGACCAGCCTAA 59.669 55.000 0.00 0.0 0.00 2.69 F
659 676 0.972983 ATATCGCCTGATCCTCCCCG 60.973 60.000 0.00 0.0 35.99 5.73 F
2455 2535 1.000955 TCCGCTTCCTTCACAAGAGTC 59.999 52.381 0.00 0.0 0.00 3.36 F
2931 3012 1.021968 ACGCCAACAGTTTCTTGGAC 58.978 50.000 1.24 0.0 40.76 4.02 F
3963 4045 0.179086 TCGCAGCAGAAGTGTCAACA 60.179 50.000 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1112 1162 0.461961 GGCGGCTCTGTCTGTTATCT 59.538 55.0 0.0 0.0 0.00 1.98 R
1524 1592 0.596083 GATCACGAGCCATCAGACCG 60.596 60.0 0.0 0.0 0.00 4.79 R
2537 2617 1.733402 TTTTGCCCGTGCTGTTCTGG 61.733 55.0 0.0 0.0 38.71 3.86 R
3931 4013 0.239347 GCTGCGATGAAGTTGCTTGT 59.761 50.0 0.0 0.0 38.13 3.16 R
4560 4672 0.031721 GACGACCAGAACACTCGGTT 59.968 55.0 0.0 0.0 44.10 4.44 R
5763 5947 0.107557 CCAATTTGGGAGCAATGCCC 60.108 55.0 7.6 2.6 46.22 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.736670 GGGCCACCATGATTAACTCT 57.263 50.000 4.39 0.00 36.50 3.24
20 21 2.576615 GGGCCACCATGATTAACTCTC 58.423 52.381 4.39 0.00 36.50 3.20
21 22 2.173569 GGGCCACCATGATTAACTCTCT 59.826 50.000 4.39 0.00 36.50 3.10
22 23 3.372025 GGGCCACCATGATTAACTCTCTT 60.372 47.826 4.39 0.00 36.50 2.85
23 24 3.629398 GGCCACCATGATTAACTCTCTTG 59.371 47.826 0.00 0.00 0.00 3.02
24 25 4.517285 GCCACCATGATTAACTCTCTTGA 58.483 43.478 0.00 0.00 0.00 3.02
25 26 5.128919 GCCACCATGATTAACTCTCTTGAT 58.871 41.667 0.00 0.00 0.00 2.57
26 27 5.238214 GCCACCATGATTAACTCTCTTGATC 59.762 44.000 0.00 0.00 0.00 2.92
27 28 5.464722 CCACCATGATTAACTCTCTTGATCG 59.535 44.000 0.00 0.00 0.00 3.69
28 29 6.276091 CACCATGATTAACTCTCTTGATCGA 58.724 40.000 0.00 0.00 0.00 3.59
29 30 6.199908 CACCATGATTAACTCTCTTGATCGAC 59.800 42.308 0.00 0.00 0.00 4.20
30 31 6.097554 ACCATGATTAACTCTCTTGATCGACT 59.902 38.462 0.00 0.00 0.00 4.18
31 32 7.285629 ACCATGATTAACTCTCTTGATCGACTA 59.714 37.037 0.00 0.00 0.00 2.59
32 33 8.138074 CCATGATTAACTCTCTTGATCGACTAA 58.862 37.037 0.00 0.00 0.00 2.24
33 34 9.179552 CATGATTAACTCTCTTGATCGACTAAG 57.820 37.037 4.54 4.54 0.00 2.18
34 35 7.708051 TGATTAACTCTCTTGATCGACTAAGG 58.292 38.462 9.77 2.99 0.00 2.69
35 36 4.379339 AACTCTCTTGATCGACTAAGGC 57.621 45.455 9.77 0.00 0.00 4.35
36 37 3.626930 ACTCTCTTGATCGACTAAGGCT 58.373 45.455 9.77 0.00 0.00 4.58
37 38 3.380004 ACTCTCTTGATCGACTAAGGCTG 59.620 47.826 9.77 4.35 0.00 4.85
38 39 2.690497 TCTCTTGATCGACTAAGGCTGG 59.310 50.000 9.77 0.00 0.00 4.85
39 40 2.428890 CTCTTGATCGACTAAGGCTGGT 59.571 50.000 9.77 0.00 0.00 4.00
40 41 2.427453 TCTTGATCGACTAAGGCTGGTC 59.573 50.000 9.77 9.85 0.00 4.02
41 42 1.847328 TGATCGACTAAGGCTGGTCA 58.153 50.000 17.11 1.86 32.75 4.02
42 43 1.476891 TGATCGACTAAGGCTGGTCAC 59.523 52.381 17.11 10.22 32.75 3.67
43 44 1.476891 GATCGACTAAGGCTGGTCACA 59.523 52.381 17.11 6.77 32.75 3.58
44 45 1.334160 TCGACTAAGGCTGGTCACAA 58.666 50.000 17.11 3.75 32.75 3.33
45 46 1.899814 TCGACTAAGGCTGGTCACAAT 59.100 47.619 17.11 0.00 32.75 2.71
46 47 2.002586 CGACTAAGGCTGGTCACAATG 58.997 52.381 17.11 1.77 32.75 2.82
47 48 2.359900 GACTAAGGCTGGTCACAATGG 58.640 52.381 13.65 0.00 33.40 3.16
48 49 1.004745 ACTAAGGCTGGTCACAATGGG 59.995 52.381 0.00 0.00 0.00 4.00
49 50 0.323360 TAAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
50 51 2.283101 GGCTGGTCACAATGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
51 52 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
52 53 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
53 54 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
54 55 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
55 56 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
56 57 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
57 58 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
58 59 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
59 60 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
60 61 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
61 62 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
62 63 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
63 64 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
64 65 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
65 66 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
66 67 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
67 68 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
68 69 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
69 70 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
70 71 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
71 72 7.046033 GGGCAAGAACATAAGCTAGTAACTTA 58.954 38.462 0.00 0.00 34.29 2.24
72 73 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
73 74 7.548075 GGCAAGAACATAAGCTAGTAACTTACA 59.452 37.037 1.79 0.00 32.67 2.41
74 75 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
75 76 9.419297 CAAGAACATAAGCTAGTAACTTACACA 57.581 33.333 1.79 0.00 32.67 3.72
76 77 8.983307 AGAACATAAGCTAGTAACTTACACAC 57.017 34.615 1.79 0.00 32.67 3.82
77 78 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
78 79 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
79 80 8.983307 ACATAAGCTAGTAACTTACACACTTC 57.017 34.615 1.79 0.00 32.67 3.01
80 81 8.804204 ACATAAGCTAGTAACTTACACACTTCT 58.196 33.333 1.79 0.00 32.67 2.85
81 82 9.291664 CATAAGCTAGTAACTTACACACTTCTC 57.708 37.037 1.79 0.00 32.67 2.87
82 83 7.527568 AAGCTAGTAACTTACACACTTCTCT 57.472 36.000 1.79 0.00 0.00 3.10
83 84 8.632906 AAGCTAGTAACTTACACACTTCTCTA 57.367 34.615 1.79 0.00 0.00 2.43
84 85 8.271312 AGCTAGTAACTTACACACTTCTCTAG 57.729 38.462 1.79 0.00 0.00 2.43
85 86 8.102047 AGCTAGTAACTTACACACTTCTCTAGA 58.898 37.037 1.79 0.00 0.00 2.43
86 87 8.177013 GCTAGTAACTTACACACTTCTCTAGAC 58.823 40.741 1.79 0.00 0.00 2.59
87 88 9.439500 CTAGTAACTTACACACTTCTCTAGACT 57.561 37.037 1.79 0.00 0.00 3.24
89 90 9.962809 AGTAACTTACACACTTCTCTAGACTAT 57.037 33.333 1.79 0.00 0.00 2.12
90 91 9.991388 GTAACTTACACACTTCTCTAGACTATG 57.009 37.037 0.00 0.00 0.00 2.23
91 92 8.638629 AACTTACACACTTCTCTAGACTATGT 57.361 34.615 0.00 0.00 0.00 2.29
92 93 8.638629 ACTTACACACTTCTCTAGACTATGTT 57.361 34.615 0.00 0.00 0.00 2.71
93 94 9.736414 ACTTACACACTTCTCTAGACTATGTTA 57.264 33.333 0.00 0.00 0.00 2.41
94 95 9.991388 CTTACACACTTCTCTAGACTATGTTAC 57.009 37.037 0.00 0.00 0.00 2.50
95 96 9.736414 TTACACACTTCTCTAGACTATGTTACT 57.264 33.333 0.00 0.00 0.00 2.24
97 98 9.165035 ACACACTTCTCTAGACTATGTTACTAC 57.835 37.037 0.00 0.00 0.00 2.73
98 99 8.614346 CACACTTCTCTAGACTATGTTACTACC 58.386 40.741 0.00 0.00 0.00 3.18
99 100 8.550585 ACACTTCTCTAGACTATGTTACTACCT 58.449 37.037 0.00 0.00 0.00 3.08
100 101 9.048446 CACTTCTCTAGACTATGTTACTACCTC 57.952 40.741 0.00 0.00 0.00 3.85
101 102 8.212995 ACTTCTCTAGACTATGTTACTACCTCC 58.787 40.741 0.00 0.00 0.00 4.30
102 103 7.687383 TCTCTAGACTATGTTACTACCTCCA 57.313 40.000 0.00 0.00 0.00 3.86
103 104 8.277720 TCTCTAGACTATGTTACTACCTCCAT 57.722 38.462 0.00 0.00 0.00 3.41
104 105 9.389949 TCTCTAGACTATGTTACTACCTCCATA 57.610 37.037 0.00 0.00 0.00 2.74
105 106 9.661563 CTCTAGACTATGTTACTACCTCCATAG 57.338 40.741 0.00 0.00 41.50 2.23
107 108 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
108 109 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
109 110 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
110 111 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
111 112 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
117 118 3.798515 ACCTCCATAGTGGGTAGAAACA 58.201 45.455 0.00 0.00 38.32 2.83
118 119 4.371681 ACCTCCATAGTGGGTAGAAACAT 58.628 43.478 0.00 0.00 38.32 2.71
119 120 4.788617 ACCTCCATAGTGGGTAGAAACATT 59.211 41.667 0.00 0.00 38.32 2.71
120 121 5.253096 ACCTCCATAGTGGGTAGAAACATTT 59.747 40.000 0.00 0.00 38.32 2.32
121 122 6.445786 ACCTCCATAGTGGGTAGAAACATTTA 59.554 38.462 0.00 0.00 38.32 1.40
122 123 7.128883 ACCTCCATAGTGGGTAGAAACATTTAT 59.871 37.037 0.00 0.00 38.32 1.40
123 124 7.445402 CCTCCATAGTGGGTAGAAACATTTATG 59.555 40.741 0.00 0.00 38.32 1.90
124 125 7.867921 TCCATAGTGGGTAGAAACATTTATGT 58.132 34.615 0.00 0.00 39.54 2.29
125 126 8.994500 TCCATAGTGGGTAGAAACATTTATGTA 58.006 33.333 0.00 0.00 37.90 2.29
126 127 9.273016 CCATAGTGGGTAGAAACATTTATGTAG 57.727 37.037 0.00 0.00 35.14 2.74
127 128 9.832445 CATAGTGGGTAGAAACATTTATGTAGT 57.168 33.333 0.00 0.00 40.80 2.73
128 129 9.832445 ATAGTGGGTAGAAACATTTATGTAGTG 57.168 33.333 0.00 0.00 40.80 2.74
129 130 7.686434 AGTGGGTAGAAACATTTATGTAGTGT 58.314 34.615 0.00 0.00 40.80 3.55
130 131 7.822822 AGTGGGTAGAAACATTTATGTAGTGTC 59.177 37.037 0.00 0.00 40.80 3.67
131 132 7.604927 GTGGGTAGAAACATTTATGTAGTGTCA 59.395 37.037 0.00 0.00 40.80 3.58
132 133 8.325787 TGGGTAGAAACATTTATGTAGTGTCAT 58.674 33.333 0.00 0.00 40.80 3.06
133 134 8.612619 GGGTAGAAACATTTATGTAGTGTCATG 58.387 37.037 0.00 0.00 40.80 3.07
134 135 8.122952 GGTAGAAACATTTATGTAGTGTCATGC 58.877 37.037 0.00 0.00 40.80 4.06
135 136 7.686438 AGAAACATTTATGTAGTGTCATGCA 57.314 32.000 0.00 0.00 40.80 3.96
136 137 8.109705 AGAAACATTTATGTAGTGTCATGCAA 57.890 30.769 0.00 0.00 40.80 4.08
137 138 8.023128 AGAAACATTTATGTAGTGTCATGCAAC 58.977 33.333 0.00 0.00 40.80 4.17
138 139 5.868257 ACATTTATGTAGTGTCATGCAACG 58.132 37.500 0.00 0.00 39.68 4.10
139 140 5.641636 ACATTTATGTAGTGTCATGCAACGA 59.358 36.000 0.00 0.00 39.68 3.85
140 141 6.316140 ACATTTATGTAGTGTCATGCAACGAT 59.684 34.615 0.00 0.00 39.68 3.73
141 142 5.717038 TTATGTAGTGTCATGCAACGATG 57.283 39.130 0.00 0.00 0.00 3.84
142 143 3.038788 TGTAGTGTCATGCAACGATGT 57.961 42.857 0.00 0.00 0.00 3.06
143 144 4.181309 TGTAGTGTCATGCAACGATGTA 57.819 40.909 0.00 0.00 0.00 2.29
144 145 4.754322 TGTAGTGTCATGCAACGATGTAT 58.246 39.130 0.00 0.00 31.41 2.29
145 146 5.175127 TGTAGTGTCATGCAACGATGTATT 58.825 37.500 0.00 0.00 28.42 1.89
146 147 5.641636 TGTAGTGTCATGCAACGATGTATTT 59.358 36.000 0.00 0.00 28.42 1.40
147 148 6.814146 TGTAGTGTCATGCAACGATGTATTTA 59.186 34.615 0.00 0.00 28.42 1.40
148 149 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
149 150 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
150 151 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
151 152 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
152 153 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
153 154 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
154 155 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
155 156 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
176 177 9.793259 AGGTTATAGACTCATTGTTTCTTGAAA 57.207 29.630 0.00 0.00 0.00 2.69
181 182 7.338800 AGACTCATTGTTTCTTGAAATGTGT 57.661 32.000 0.00 0.00 39.44 3.72
182 183 7.198390 AGACTCATTGTTTCTTGAAATGTGTG 58.802 34.615 6.96 3.61 37.84 3.82
183 184 7.067372 AGACTCATTGTTTCTTGAAATGTGTGA 59.933 33.333 6.96 2.53 37.84 3.58
184 185 7.719483 ACTCATTGTTTCTTGAAATGTGTGAT 58.281 30.769 0.00 0.00 36.92 3.06
185 186 7.650504 ACTCATTGTTTCTTGAAATGTGTGATG 59.349 33.333 0.00 0.00 36.92 3.07
186 187 6.421501 TCATTGTTTCTTGAAATGTGTGATGC 59.578 34.615 0.00 0.00 33.84 3.91
187 188 5.518848 TGTTTCTTGAAATGTGTGATGCT 57.481 34.783 0.00 0.00 0.00 3.79
188 189 5.522456 TGTTTCTTGAAATGTGTGATGCTC 58.478 37.500 0.00 0.00 0.00 4.26
189 190 4.771590 TTCTTGAAATGTGTGATGCTCC 57.228 40.909 0.00 0.00 0.00 4.70
190 191 2.743664 TCTTGAAATGTGTGATGCTCCG 59.256 45.455 0.00 0.00 0.00 4.63
191 192 2.470983 TGAAATGTGTGATGCTCCGA 57.529 45.000 0.00 0.00 0.00 4.55
192 193 2.989909 TGAAATGTGTGATGCTCCGAT 58.010 42.857 0.00 0.00 0.00 4.18
193 194 4.135747 TGAAATGTGTGATGCTCCGATA 57.864 40.909 0.00 0.00 0.00 2.92
194 195 4.512484 TGAAATGTGTGATGCTCCGATAA 58.488 39.130 0.00 0.00 0.00 1.75
195 196 4.332543 TGAAATGTGTGATGCTCCGATAAC 59.667 41.667 0.00 0.00 0.00 1.89
196 197 3.827008 ATGTGTGATGCTCCGATAACT 57.173 42.857 0.00 0.00 0.00 2.24
197 198 3.610040 TGTGTGATGCTCCGATAACTT 57.390 42.857 0.00 0.00 0.00 2.66
198 199 4.729227 TGTGTGATGCTCCGATAACTTA 57.271 40.909 0.00 0.00 0.00 2.24
199 200 4.682787 TGTGTGATGCTCCGATAACTTAG 58.317 43.478 0.00 0.00 0.00 2.18
200 201 3.491267 GTGTGATGCTCCGATAACTTAGC 59.509 47.826 0.00 0.00 35.51 3.09
201 202 3.384789 TGTGATGCTCCGATAACTTAGCT 59.615 43.478 0.00 0.00 35.95 3.32
202 203 4.583073 TGTGATGCTCCGATAACTTAGCTA 59.417 41.667 0.00 0.00 35.95 3.32
203 204 5.157781 GTGATGCTCCGATAACTTAGCTAG 58.842 45.833 0.00 0.00 35.95 3.42
204 205 4.827835 TGATGCTCCGATAACTTAGCTAGT 59.172 41.667 0.00 0.00 39.32 2.57
215 216 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
216 217 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
217 218 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
218 219 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
219 220 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
220 221 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
221 222 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
222 223 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
223 224 3.507411 AGTTACCACAAGCACCTCTCTA 58.493 45.455 0.00 0.00 0.00 2.43
224 225 4.097418 AGTTACCACAAGCACCTCTCTAT 58.903 43.478 0.00 0.00 0.00 1.98
225 226 4.532521 AGTTACCACAAGCACCTCTCTATT 59.467 41.667 0.00 0.00 0.00 1.73
226 227 3.618690 ACCACAAGCACCTCTCTATTC 57.381 47.619 0.00 0.00 0.00 1.75
227 228 2.906389 ACCACAAGCACCTCTCTATTCA 59.094 45.455 0.00 0.00 0.00 2.57
228 229 3.521126 ACCACAAGCACCTCTCTATTCAT 59.479 43.478 0.00 0.00 0.00 2.57
229 230 4.018960 ACCACAAGCACCTCTCTATTCATT 60.019 41.667 0.00 0.00 0.00 2.57
230 231 5.189736 ACCACAAGCACCTCTCTATTCATTA 59.810 40.000 0.00 0.00 0.00 1.90
231 232 6.115446 CCACAAGCACCTCTCTATTCATTAA 58.885 40.000 0.00 0.00 0.00 1.40
232 233 6.599244 CCACAAGCACCTCTCTATTCATTAAA 59.401 38.462 0.00 0.00 0.00 1.52
233 234 7.284034 CCACAAGCACCTCTCTATTCATTAAAT 59.716 37.037 0.00 0.00 0.00 1.40
234 235 9.330063 CACAAGCACCTCTCTATTCATTAAATA 57.670 33.333 0.00 0.00 0.00 1.40
238 239 9.499479 AGCACCTCTCTATTCATTAAATATGTG 57.501 33.333 0.00 0.00 0.00 3.21
239 240 8.233190 GCACCTCTCTATTCATTAAATATGTGC 58.767 37.037 0.00 0.00 32.11 4.57
240 241 8.725148 CACCTCTCTATTCATTAAATATGTGCC 58.275 37.037 0.00 0.00 0.00 5.01
241 242 8.439971 ACCTCTCTATTCATTAAATATGTGCCA 58.560 33.333 0.00 0.00 0.00 4.92
242 243 8.725148 CCTCTCTATTCATTAAATATGTGCCAC 58.275 37.037 0.00 0.00 0.00 5.01
243 244 9.276590 CTCTCTATTCATTAAATATGTGCCACA 57.723 33.333 0.00 0.00 0.00 4.17
244 245 9.797642 TCTCTATTCATTAAATATGTGCCACAT 57.202 29.630 15.69 15.69 42.35 3.21
249 250 7.579761 TCATTAAATATGTGCCACATAAGCA 57.420 32.000 20.57 6.59 43.50 3.91
250 251 8.005192 TCATTAAATATGTGCCACATAAGCAA 57.995 30.769 20.57 14.07 43.50 3.91
251 252 8.473219 TCATTAAATATGTGCCACATAAGCAAA 58.527 29.630 20.57 12.83 43.50 3.68
252 253 8.757789 CATTAAATATGTGCCACATAAGCAAAG 58.242 33.333 20.57 8.50 43.50 2.77
253 254 5.920193 AATATGTGCCACATAAGCAAAGT 57.080 34.783 20.57 0.54 43.50 2.66
254 255 5.920193 ATATGTGCCACATAAGCAAAGTT 57.080 34.783 20.57 0.00 43.50 2.66
255 256 3.367992 TGTGCCACATAAGCAAAGTTG 57.632 42.857 0.00 0.00 43.02 3.16
256 257 2.692557 TGTGCCACATAAGCAAAGTTGT 59.307 40.909 0.00 0.00 43.02 3.32
257 258 3.885901 TGTGCCACATAAGCAAAGTTGTA 59.114 39.130 0.00 0.00 43.02 2.41
258 259 4.522405 TGTGCCACATAAGCAAAGTTGTAT 59.478 37.500 0.00 0.00 43.02 2.29
259 260 5.010516 TGTGCCACATAAGCAAAGTTGTATT 59.989 36.000 0.00 0.00 43.02 1.89
260 261 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
261 262 5.242615 TGCCACATAAGCAAAGTTGTATTGA 59.757 36.000 0.00 0.00 37.28 2.57
262 263 6.155827 GCCACATAAGCAAAGTTGTATTGAA 58.844 36.000 0.00 0.00 0.00 2.69
263 264 6.308766 GCCACATAAGCAAAGTTGTATTGAAG 59.691 38.462 0.00 0.00 0.00 3.02
264 265 7.370383 CCACATAAGCAAAGTTGTATTGAAGT 58.630 34.615 0.00 0.00 0.00 3.01
265 266 7.326789 CCACATAAGCAAAGTTGTATTGAAGTG 59.673 37.037 0.00 0.00 0.00 3.16
266 267 7.862372 CACATAAGCAAAGTTGTATTGAAGTGT 59.138 33.333 0.00 0.00 0.00 3.55
267 268 7.862372 ACATAAGCAAAGTTGTATTGAAGTGTG 59.138 33.333 0.00 0.00 0.00 3.82
268 269 5.835113 AGCAAAGTTGTATTGAAGTGTGT 57.165 34.783 0.00 0.00 0.00 3.72
269 270 5.581605 AGCAAAGTTGTATTGAAGTGTGTG 58.418 37.500 0.00 0.00 0.00 3.82
270 271 5.356751 AGCAAAGTTGTATTGAAGTGTGTGA 59.643 36.000 0.00 0.00 0.00 3.58
271 272 6.039717 AGCAAAGTTGTATTGAAGTGTGTGAT 59.960 34.615 0.00 0.00 0.00 3.06
272 273 6.142798 GCAAAGTTGTATTGAAGTGTGTGATG 59.857 38.462 0.00 0.00 0.00 3.07
273 274 6.942532 AAGTTGTATTGAAGTGTGTGATGT 57.057 33.333 0.00 0.00 0.00 3.06
274 275 6.942532 AGTTGTATTGAAGTGTGTGATGTT 57.057 33.333 0.00 0.00 0.00 2.71
275 276 8.445275 AAGTTGTATTGAAGTGTGTGATGTTA 57.555 30.769 0.00 0.00 0.00 2.41
276 277 7.861630 AGTTGTATTGAAGTGTGTGATGTTAC 58.138 34.615 0.00 0.00 0.00 2.50
277 278 7.715249 AGTTGTATTGAAGTGTGTGATGTTACT 59.285 33.333 0.00 0.00 0.00 2.24
278 279 7.652300 TGTATTGAAGTGTGTGATGTTACTC 57.348 36.000 0.00 0.00 0.00 2.59
279 280 6.649141 TGTATTGAAGTGTGTGATGTTACTCC 59.351 38.462 0.00 0.00 0.00 3.85
280 281 4.955811 TGAAGTGTGTGATGTTACTCCT 57.044 40.909 0.00 0.00 0.00 3.69
281 282 6.413783 TTGAAGTGTGTGATGTTACTCCTA 57.586 37.500 0.00 0.00 0.00 2.94
282 283 6.413783 TGAAGTGTGTGATGTTACTCCTAA 57.586 37.500 0.00 0.00 0.00 2.69
283 284 6.455647 TGAAGTGTGTGATGTTACTCCTAAG 58.544 40.000 0.00 0.00 0.00 2.18
284 285 6.041637 TGAAGTGTGTGATGTTACTCCTAAGT 59.958 38.462 0.00 0.00 39.66 2.24
285 286 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
286 287 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
287 288 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
288 289 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
289 290 6.100668 GTGTGATGTTACTCCTAAGTTCCTC 58.899 44.000 0.00 0.00 36.92 3.71
290 291 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
291 292 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
292 293 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
293 294 3.181404 TGTTACTCCTAAGTTCCTCCCCA 60.181 47.826 0.00 0.00 36.92 4.96
294 295 2.972153 ACTCCTAAGTTCCTCCCCAT 57.028 50.000 0.00 0.00 28.74 4.00
295 296 3.222394 ACTCCTAAGTTCCTCCCCATT 57.778 47.619 0.00 0.00 28.74 3.16
296 297 2.846827 ACTCCTAAGTTCCTCCCCATTG 59.153 50.000 0.00 0.00 28.74 2.82
297 298 2.846827 CTCCTAAGTTCCTCCCCATTGT 59.153 50.000 0.00 0.00 0.00 2.71
298 299 2.576191 TCCTAAGTTCCTCCCCATTGTG 59.424 50.000 0.00 0.00 0.00 3.33
299 300 2.576191 CCTAAGTTCCTCCCCATTGTGA 59.424 50.000 0.00 0.00 0.00 3.58
300 301 2.586648 AAGTTCCTCCCCATTGTGAC 57.413 50.000 0.00 0.00 0.00 3.67
301 302 0.698818 AGTTCCTCCCCATTGTGACC 59.301 55.000 0.00 0.00 0.00 4.02
302 303 0.404040 GTTCCTCCCCATTGTGACCA 59.596 55.000 0.00 0.00 0.00 4.02
303 304 0.698238 TTCCTCCCCATTGTGACCAG 59.302 55.000 0.00 0.00 0.00 4.00
304 305 1.379044 CCTCCCCATTGTGACCAGC 60.379 63.158 0.00 0.00 0.00 4.85
305 306 1.379044 CTCCCCATTGTGACCAGCC 60.379 63.158 0.00 0.00 0.00 4.85
306 307 1.852157 TCCCCATTGTGACCAGCCT 60.852 57.895 0.00 0.00 0.00 4.58
307 308 0.548926 TCCCCATTGTGACCAGCCTA 60.549 55.000 0.00 0.00 0.00 3.93
308 309 0.331278 CCCCATTGTGACCAGCCTAA 59.669 55.000 0.00 0.00 0.00 2.69
309 310 1.272425 CCCCATTGTGACCAGCCTAAA 60.272 52.381 0.00 0.00 0.00 1.85
310 311 1.818674 CCCATTGTGACCAGCCTAAAC 59.181 52.381 0.00 0.00 0.00 2.01
311 312 1.468520 CCATTGTGACCAGCCTAAACG 59.531 52.381 0.00 0.00 0.00 3.60
312 313 2.422597 CATTGTGACCAGCCTAAACGA 58.577 47.619 0.00 0.00 0.00 3.85
344 345 1.469940 CCAGCAGGAAGTACAGCTACG 60.470 57.143 0.00 0.00 35.19 3.51
512 527 2.179018 CCCAGCCGCACGATTTTG 59.821 61.111 0.00 0.00 0.00 2.44
659 676 0.972983 ATATCGCCTGATCCTCCCCG 60.973 60.000 0.00 0.00 35.99 5.73
1006 1056 1.103398 CCACTGGCATTTCGATCCCC 61.103 60.000 0.00 0.00 0.00 4.81
1046 1096 1.080995 CCAGCGCGAGAAGAAGAAGG 61.081 60.000 12.10 0.00 0.00 3.46
1052 1102 2.094957 CGCGAGAAGAAGAAGGAGAAGT 60.095 50.000 0.00 0.00 0.00 3.01
1053 1103 3.507786 GCGAGAAGAAGAAGGAGAAGTC 58.492 50.000 0.00 0.00 0.00 3.01
1056 1106 4.670735 CGAGAAGAAGAAGGAGAAGTCGTC 60.671 50.000 0.00 0.00 0.00 4.20
1090 1140 1.802960 CAAACTTGATCTGCGAGCTGT 59.197 47.619 0.00 0.00 0.00 4.40
1094 1144 2.125391 GATCTGCGAGCTGTGGCA 60.125 61.111 0.00 0.00 41.70 4.92
1350 1403 2.675423 TGCGCACCTCGACTACCT 60.675 61.111 5.66 0.00 41.67 3.08
1414 1467 3.504906 TGATTTGTCGAGTCGGTAGTTCT 59.495 43.478 13.54 0.00 0.00 3.01
1441 1507 4.161295 CTGCGGGCAGATCGGGAA 62.161 66.667 15.38 0.00 46.30 3.97
1442 1508 3.466791 CTGCGGGCAGATCGGGAAT 62.467 63.158 15.38 0.00 46.30 3.01
1449 1515 1.202698 GGCAGATCGGGAATTAGCTGT 60.203 52.381 0.00 0.00 0.00 4.40
1466 1532 3.128349 GCTGTCGGTTTTACAGAGTTCA 58.872 45.455 7.39 0.00 45.89 3.18
1524 1592 2.947127 AGGAATAGGATGCTTGCTCC 57.053 50.000 0.00 0.00 0.00 4.70
1591 1659 5.590663 AGTTCGACAGATATGCTACTTCTGA 59.409 40.000 6.19 0.00 39.36 3.27
1594 1669 5.532779 TCGACAGATATGCTACTTCTGATGT 59.467 40.000 6.19 1.65 39.36 3.06
1608 1683 5.359576 ACTTCTGATGTCTAGAGATGACACC 59.640 44.000 7.19 0.00 45.57 4.16
1679 1758 5.713792 TTCAAATACCCGAAAATTGCTCA 57.286 34.783 0.00 0.00 0.00 4.26
1786 1865 4.272504 CCATACCCAAGTTATGTGTTAGCG 59.727 45.833 0.00 0.00 0.00 4.26
1803 1882 5.008217 TGTTAGCGTGATTTTTAGCACAGTT 59.992 36.000 0.00 0.00 34.78 3.16
1806 1885 5.689819 AGCGTGATTTTTAGCACAGTTAAG 58.310 37.500 0.00 0.00 34.78 1.85
1807 1886 5.468746 AGCGTGATTTTTAGCACAGTTAAGA 59.531 36.000 0.00 0.00 34.78 2.10
1808 1887 5.564127 GCGTGATTTTTAGCACAGTTAAGAC 59.436 40.000 0.00 0.00 34.78 3.01
2126 2206 4.906065 ACATGACGCATGCAAGAATATT 57.094 36.364 19.57 0.00 44.80 1.28
2192 2272 5.012561 AGTTTTCAGATTCTACTCCTGCAGT 59.987 40.000 13.81 0.00 39.41 4.40
2369 2449 7.535997 GTTTGGAGAAAACAACTTGTAAGACT 58.464 34.615 0.00 0.00 46.30 3.24
2391 2471 9.035607 AGACTACATACTTGCATCTTTTTATCG 57.964 33.333 0.00 0.00 0.00 2.92
2395 2475 6.747280 ACATACTTGCATCTTTTTATCGCAAC 59.253 34.615 0.00 0.00 37.64 4.17
2401 2481 5.982516 TGCATCTTTTTATCGCAACTGTTTT 59.017 32.000 0.00 0.00 0.00 2.43
2455 2535 1.000955 TCCGCTTCCTTCACAAGAGTC 59.999 52.381 0.00 0.00 0.00 3.36
2472 2552 3.506844 AGAGTCGACCACTAAAACCTCTC 59.493 47.826 13.01 0.00 34.41 3.20
2512 2592 2.696989 ATGGTGAGATCGATGTGCAA 57.303 45.000 0.54 0.00 0.00 4.08
2535 2615 6.734104 ACAGATACAACAAGAAGAGAATGC 57.266 37.500 0.00 0.00 0.00 3.56
2537 2617 5.065731 CAGATACAACAAGAAGAGAATGCCC 59.934 44.000 0.00 0.00 0.00 5.36
2730 2811 6.536941 GGAATCAGTGATTTCCTCTTGTCTAC 59.463 42.308 19.19 2.31 31.89 2.59
2731 2812 6.865834 ATCAGTGATTTCCTCTTGTCTACT 57.134 37.500 0.00 0.00 0.00 2.57
2749 2830 7.500992 TGTCTACTAGCCATCATTCTTAAAGG 58.499 38.462 0.00 0.00 0.00 3.11
2768 2849 9.352191 CTTAAAGGACCTGATAGCTAGTAGTAA 57.648 37.037 0.00 0.00 0.00 2.24
2779 2860 8.365647 TGATAGCTAGTAGTAAAAACTATGGGC 58.634 37.037 0.00 0.00 0.00 5.36
2780 2861 5.926663 AGCTAGTAGTAAAAACTATGGGCC 58.073 41.667 0.00 0.00 0.00 5.80
2781 2862 5.427481 AGCTAGTAGTAAAAACTATGGGCCA 59.573 40.000 9.61 9.61 0.00 5.36
2782 2863 6.101296 AGCTAGTAGTAAAAACTATGGGCCAT 59.899 38.462 24.69 24.69 0.00 4.40
2783 2864 6.427242 GCTAGTAGTAAAAACTATGGGCCATC 59.573 42.308 25.07 5.83 0.00 3.51
2784 2865 6.321821 AGTAGTAAAAACTATGGGCCATCA 57.678 37.500 25.07 8.83 0.00 3.07
2785 2866 6.357367 AGTAGTAAAAACTATGGGCCATCAG 58.643 40.000 25.07 19.66 0.00 2.90
2786 2867 5.193099 AGTAAAAACTATGGGCCATCAGT 57.807 39.130 25.07 20.30 0.00 3.41
2787 2868 4.949856 AGTAAAAACTATGGGCCATCAGTG 59.050 41.667 25.07 14.02 0.00 3.66
2788 2869 3.737559 AAAACTATGGGCCATCAGTGA 57.262 42.857 25.07 3.65 0.00 3.41
2789 2870 2.717639 AACTATGGGCCATCAGTGAC 57.282 50.000 25.07 0.00 0.00 3.67
2824 2905 9.699703 GATTTCCTCTATGTTGAACCTAGATAC 57.300 37.037 10.11 0.00 27.69 2.24
2831 2912 4.890088 TGTTGAACCTAGATACGTTGCTT 58.110 39.130 0.00 0.00 0.00 3.91
2832 2913 5.302360 TGTTGAACCTAGATACGTTGCTTT 58.698 37.500 0.00 0.00 0.00 3.51
2914 2995 2.047465 AGGCTGAGAGCAAGCACG 60.047 61.111 0.00 0.00 44.75 5.34
2931 3012 1.021968 ACGCCAACAGTTTCTTGGAC 58.978 50.000 1.24 0.00 40.76 4.02
3000 3081 4.714308 ACTCTGGAAAATAGAGACCCTGAG 59.286 45.833 8.84 0.00 43.41 3.35
3058 3139 7.170151 CGACAGATATCGAGGTAGTCCATATAG 59.830 44.444 0.00 0.00 45.13 1.31
3150 3231 2.700897 CGATAAGTGGTTCTCCATCCCT 59.299 50.000 0.00 0.00 46.20 4.20
3384 3466 9.843334 GTTTTTGTTCCCACGTATATTTTCATA 57.157 29.630 0.00 0.00 0.00 2.15
3609 3691 7.297936 TGTTGACCTAGAAAGACATCTTACA 57.702 36.000 0.00 0.00 34.61 2.41
3717 3799 1.499056 CAACACACGCAGATCTGGC 59.501 57.895 23.89 14.68 0.00 4.85
3820 3902 1.059584 TTCCAGTTGGAGGCCTCACA 61.060 55.000 33.29 24.54 46.36 3.58
3892 3974 2.035632 CCACAGTCAGGTCCTCCTATC 58.964 57.143 0.00 0.00 43.07 2.08
3955 4037 1.465354 GCAACTTCATCGCAGCAGAAG 60.465 52.381 14.50 14.50 41.49 2.85
3956 4038 3.923354 ACTTCATCGCAGCAGAAGT 57.077 47.368 15.52 15.52 42.98 3.01
3957 4039 1.436600 ACTTCATCGCAGCAGAAGTG 58.563 50.000 18.85 3.74 44.84 3.16
3958 4040 1.270518 ACTTCATCGCAGCAGAAGTGT 60.271 47.619 18.85 2.55 44.84 3.55
3959 4041 1.392853 CTTCATCGCAGCAGAAGTGTC 59.607 52.381 9.87 0.00 34.86 3.67
3960 4042 0.318120 TCATCGCAGCAGAAGTGTCA 59.682 50.000 0.00 0.00 0.00 3.58
3961 4043 1.150827 CATCGCAGCAGAAGTGTCAA 58.849 50.000 0.00 0.00 0.00 3.18
3962 4044 1.136141 CATCGCAGCAGAAGTGTCAAC 60.136 52.381 0.00 0.00 0.00 3.18
3963 4045 0.179086 TCGCAGCAGAAGTGTCAACA 60.179 50.000 0.00 0.00 0.00 3.33
3964 4046 0.234106 CGCAGCAGAAGTGTCAACAG 59.766 55.000 0.00 0.00 0.00 3.16
3965 4047 1.586422 GCAGCAGAAGTGTCAACAGA 58.414 50.000 0.00 0.00 0.00 3.41
3966 4048 1.942657 GCAGCAGAAGTGTCAACAGAA 59.057 47.619 0.00 0.00 0.00 3.02
3976 4058 3.259374 AGTGTCAACAGAATGATCCGACT 59.741 43.478 0.00 0.00 39.69 4.18
3987 4069 2.302260 TGATCCGACTGAGATGGACTC 58.698 52.381 0.00 0.00 45.11 3.36
4036 4118 1.542187 AAGTGCTACCTCCACCGACC 61.542 60.000 0.00 0.00 33.75 4.79
4114 4196 3.941188 CCCATGGCCGGCGATAGT 61.941 66.667 24.39 0.00 39.35 2.12
4136 4218 2.260481 GAAGCGGAAGTAGTACTGTGC 58.740 52.381 5.39 8.40 0.00 4.57
4210 4304 1.742768 GATCGCCACCCCTACTGAG 59.257 63.158 0.00 0.00 0.00 3.35
4225 4319 1.002366 CTGAGCAGTGTAACGCATCC 58.998 55.000 0.00 0.00 45.86 3.51
4237 4331 2.585247 GCATCCGACGGTGCTACC 60.585 66.667 24.81 5.55 38.30 3.18
4359 4453 7.253905 AGGTAGGCACAAGAACTAATCTTAA 57.746 36.000 0.00 0.00 46.80 1.85
4366 4460 8.780249 GGCACAAGAACTAATCTTAACTTTACA 58.220 33.333 0.00 0.00 46.80 2.41
4388 4485 7.169158 ACATATTTCGATCCAATTTTGTGGT 57.831 32.000 0.00 0.00 39.88 4.16
4469 4568 1.728971 CAGAGCAGGAAACTACTTGCG 59.271 52.381 0.00 0.00 45.28 4.85
4529 4628 1.471684 GAGCAGAACATCCAAGCAAGG 59.528 52.381 0.00 0.00 0.00 3.61
4535 4634 2.496899 ACATCCAAGCAAGGTAGGTG 57.503 50.000 0.00 0.00 0.00 4.00
4540 4652 1.004745 CCAAGCAAGGTAGGTGGACAT 59.995 52.381 0.00 0.00 0.00 3.06
4718 4843 1.210478 AGAACACACTGCCTGACTTGT 59.790 47.619 0.00 0.00 0.00 3.16
4722 4847 2.170607 ACACACTGCCTGACTTGTTACT 59.829 45.455 0.00 0.00 0.00 2.24
4723 4848 3.206150 CACACTGCCTGACTTGTTACTT 58.794 45.455 0.00 0.00 0.00 2.24
4724 4849 3.002656 CACACTGCCTGACTTGTTACTTG 59.997 47.826 0.00 0.00 0.00 3.16
4725 4850 3.206150 CACTGCCTGACTTGTTACTTGT 58.794 45.455 0.00 0.00 0.00 3.16
4726 4851 3.627577 CACTGCCTGACTTGTTACTTGTT 59.372 43.478 0.00 0.00 0.00 2.83
4727 4852 4.096382 CACTGCCTGACTTGTTACTTGTTT 59.904 41.667 0.00 0.00 0.00 2.83
4728 4853 4.335594 ACTGCCTGACTTGTTACTTGTTTC 59.664 41.667 0.00 0.00 0.00 2.78
4750 4875 2.223611 TGTTTGCCGTATACGTTGTTGG 59.776 45.455 22.87 8.38 37.74 3.77
4789 4918 1.673033 GGTGTCAGTCAAGGATGTCCG 60.673 57.143 0.00 0.00 42.08 4.79
4843 4972 2.843077 CATCGTTGCTGCAGTTTAGTG 58.157 47.619 16.64 4.31 0.00 2.74
4919 5053 7.571026 TCAAATGCATTTTGTAATTTTCCGTG 58.429 30.769 21.95 6.78 44.25 4.94
4922 5056 4.447054 TGCATTTTGTAATTTTCCGTGCAG 59.553 37.500 0.00 0.00 35.41 4.41
4944 5078 3.820595 GGCTGAACTTTTGGCCATC 57.179 52.632 6.09 0.00 43.59 3.51
4945 5079 0.109132 GGCTGAACTTTTGGCCATCG 60.109 55.000 6.09 0.00 43.59 3.84
4946 5080 0.598065 GCTGAACTTTTGGCCATCGT 59.402 50.000 6.09 0.37 0.00 3.73
4947 5081 1.810151 GCTGAACTTTTGGCCATCGTA 59.190 47.619 6.09 0.00 0.00 3.43
4990 5127 3.396822 ATCGAGAGGGGGTGAGGGG 62.397 68.421 0.00 0.00 0.00 4.79
5011 5154 0.172352 GCGTGGAGAGACTTGGAGAG 59.828 60.000 0.00 0.00 0.00 3.20
5025 5168 7.011382 AGACTTGGAGAGGAAGAACTTTACTA 58.989 38.462 0.00 0.00 0.00 1.82
5026 5169 7.509659 AGACTTGGAGAGGAAGAACTTTACTAA 59.490 37.037 0.00 0.00 0.00 2.24
5039 5182 7.842982 AGAACTTTACTAACAGAGGAAGGATC 58.157 38.462 0.00 0.00 29.49 3.36
5180 5335 1.152963 AAGTGGCCAGGTGTGACAC 60.153 57.895 5.11 7.29 33.82 3.67
5284 5439 3.133183 GGAGAACCTCATAGTCTTCCCAC 59.867 52.174 0.00 0.00 31.08 4.61
5338 5496 1.503542 CTTGACTTGCACGATGGCC 59.496 57.895 0.00 0.00 0.00 5.36
5370 5528 0.957888 TTCATCATGCGCCGTTCCAA 60.958 50.000 4.18 0.00 0.00 3.53
5461 5619 0.892755 AGTCCGACGTGAATGGCTTA 59.107 50.000 0.00 0.00 0.00 3.09
5464 5622 1.274167 TCCGACGTGAATGGCTTAAGT 59.726 47.619 4.02 0.00 0.00 2.24
5488 5646 1.407979 GATACGTGGAAGACCGGATGT 59.592 52.381 9.46 0.00 39.42 3.06
5554 5735 1.199097 GCCGAAGAATTTGAAGGCGAA 59.801 47.619 0.00 0.00 34.94 4.70
5561 5742 1.327303 ATTTGAAGGCGAACTTGGCA 58.673 45.000 0.00 0.00 40.21 4.92
5563 5744 0.465460 TTGAAGGCGAACTTGGCACT 60.465 50.000 0.00 0.00 40.21 4.40
5577 5759 2.111043 CACTGGGCCAGTTGACGT 59.889 61.111 35.95 12.59 42.59 4.34
5603 5785 1.226974 CTGCGCGTATGGCTGTAGT 60.227 57.895 8.43 0.00 40.44 2.73
5645 5827 0.320374 CCTGAAACTGGTGCTCGGTA 59.680 55.000 0.00 0.00 33.89 4.02
5646 5828 1.066143 CCTGAAACTGGTGCTCGGTAT 60.066 52.381 0.00 0.00 33.89 2.73
5676 5858 1.600916 GCCTGCTTCTTGAACCGGT 60.601 57.895 0.00 0.00 0.00 5.28
5794 5978 0.972471 CAAATTGGCCTCCCTCCCAC 60.972 60.000 3.32 0.00 0.00 4.61
5823 6007 1.352622 TGAAGGGGGTGCAGTTGAGT 61.353 55.000 0.00 0.00 0.00 3.41
5855 6039 6.042781 TGGAATGTAGAGTTGTACCAGAACTT 59.957 38.462 0.00 0.00 33.71 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.173569 AGAGAGTTAATCATGGTGGCCC 59.826 50.000 0.00 0.00 0.00 5.80
1 2 3.567478 AGAGAGTTAATCATGGTGGCC 57.433 47.619 0.00 0.00 0.00 5.36
2 3 4.517285 TCAAGAGAGTTAATCATGGTGGC 58.483 43.478 0.00 0.00 0.00 5.01
3 4 5.464722 CGATCAAGAGAGTTAATCATGGTGG 59.535 44.000 0.00 0.00 0.00 4.61
5 6 6.097554 AGTCGATCAAGAGAGTTAATCATGGT 59.902 38.462 0.00 0.00 0.00 3.55
6 7 6.511416 AGTCGATCAAGAGAGTTAATCATGG 58.489 40.000 0.00 0.00 0.00 3.66
7 8 9.179552 CTTAGTCGATCAAGAGAGTTAATCATG 57.820 37.037 3.53 0.00 0.00 3.07
9 10 7.682261 GCCTTAGTCGATCAAGAGAGTTAATCA 60.682 40.741 9.78 0.00 0.00 2.57
10 11 6.639279 GCCTTAGTCGATCAAGAGAGTTAATC 59.361 42.308 9.78 0.00 0.00 1.75
11 12 6.322712 AGCCTTAGTCGATCAAGAGAGTTAAT 59.677 38.462 9.78 0.00 0.00 1.40
12 13 5.652891 AGCCTTAGTCGATCAAGAGAGTTAA 59.347 40.000 9.78 0.00 0.00 2.01
13 14 5.066634 CAGCCTTAGTCGATCAAGAGAGTTA 59.933 44.000 9.78 0.00 0.00 2.24
14 15 4.020543 AGCCTTAGTCGATCAAGAGAGTT 58.979 43.478 9.78 0.00 0.00 3.01
15 16 3.380004 CAGCCTTAGTCGATCAAGAGAGT 59.620 47.826 9.78 0.00 0.00 3.24
16 17 3.243367 CCAGCCTTAGTCGATCAAGAGAG 60.243 52.174 9.78 1.16 0.00 3.20
17 18 2.690497 CCAGCCTTAGTCGATCAAGAGA 59.310 50.000 9.78 0.00 0.00 3.10
18 19 2.428890 ACCAGCCTTAGTCGATCAAGAG 59.571 50.000 9.78 3.11 0.00 2.85
19 20 2.427453 GACCAGCCTTAGTCGATCAAGA 59.573 50.000 9.78 0.00 0.00 3.02
20 21 2.166459 TGACCAGCCTTAGTCGATCAAG 59.834 50.000 0.00 0.00 35.71 3.02
21 22 2.094182 GTGACCAGCCTTAGTCGATCAA 60.094 50.000 0.00 0.00 35.71 2.57
22 23 1.476891 GTGACCAGCCTTAGTCGATCA 59.523 52.381 0.00 0.00 35.71 2.92
23 24 1.476891 TGTGACCAGCCTTAGTCGATC 59.523 52.381 0.00 0.00 35.71 3.69
24 25 1.557099 TGTGACCAGCCTTAGTCGAT 58.443 50.000 0.00 0.00 35.71 3.59
25 26 1.334160 TTGTGACCAGCCTTAGTCGA 58.666 50.000 0.00 0.00 35.71 4.20
26 27 2.002586 CATTGTGACCAGCCTTAGTCG 58.997 52.381 0.00 0.00 35.71 4.18
27 28 2.359900 CCATTGTGACCAGCCTTAGTC 58.640 52.381 0.00 0.00 0.00 2.59
28 29 1.004745 CCCATTGTGACCAGCCTTAGT 59.995 52.381 0.00 0.00 0.00 2.24
29 30 1.755179 CCCATTGTGACCAGCCTTAG 58.245 55.000 0.00 0.00 0.00 2.18
30 31 0.323360 GCCCATTGTGACCAGCCTTA 60.323 55.000 0.00 0.00 0.00 2.69
31 32 1.607467 GCCCATTGTGACCAGCCTT 60.607 57.895 0.00 0.00 0.00 4.35
32 33 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
33 34 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
34 35 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
35 36 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
36 37 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
37 38 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
38 39 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
39 40 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
40 41 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
41 42 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
42 43 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
43 44 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
44 45 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
45 46 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
46 47 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
47 48 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
48 49 8.381387 GTGTAAGTTACTAGCTTATGTTCTTGC 58.619 37.037 14.00 3.08 32.01 4.01
49 50 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
50 51 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
51 52 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
52 53 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
53 54 9.420551 GAAGTGTGTAAGTTACTAGCTTATGTT 57.579 33.333 14.00 0.00 32.01 2.71
54 55 8.804204 AGAAGTGTGTAAGTTACTAGCTTATGT 58.196 33.333 14.00 0.00 32.01 2.29
55 56 9.291664 GAGAAGTGTGTAAGTTACTAGCTTATG 57.708 37.037 14.00 0.00 32.01 1.90
56 57 9.245481 AGAGAAGTGTGTAAGTTACTAGCTTAT 57.755 33.333 14.00 11.19 32.01 1.73
57 58 8.632906 AGAGAAGTGTGTAAGTTACTAGCTTA 57.367 34.615 14.00 0.00 0.00 3.09
58 59 7.527568 AGAGAAGTGTGTAAGTTACTAGCTT 57.472 36.000 14.00 13.25 0.00 3.74
59 60 8.102047 TCTAGAGAAGTGTGTAAGTTACTAGCT 58.898 37.037 14.00 6.35 33.22 3.32
60 61 8.177013 GTCTAGAGAAGTGTGTAAGTTACTAGC 58.823 40.741 14.00 5.48 33.22 3.42
61 62 9.439500 AGTCTAGAGAAGTGTGTAAGTTACTAG 57.561 37.037 14.00 4.64 33.80 2.57
63 64 9.962809 ATAGTCTAGAGAAGTGTGTAAGTTACT 57.037 33.333 14.00 0.00 0.00 2.24
64 65 9.991388 CATAGTCTAGAGAAGTGTGTAAGTTAC 57.009 37.037 6.06 6.06 0.00 2.50
65 66 9.736414 ACATAGTCTAGAGAAGTGTGTAAGTTA 57.264 33.333 0.00 0.00 0.00 2.24
66 67 8.638629 ACATAGTCTAGAGAAGTGTGTAAGTT 57.361 34.615 0.00 0.00 0.00 2.66
67 68 8.638629 AACATAGTCTAGAGAAGTGTGTAAGT 57.361 34.615 0.00 0.00 0.00 2.24
68 69 9.991388 GTAACATAGTCTAGAGAAGTGTGTAAG 57.009 37.037 0.00 0.00 0.00 2.34
69 70 9.736414 AGTAACATAGTCTAGAGAAGTGTGTAA 57.264 33.333 0.00 0.00 0.00 2.41
71 72 9.165035 GTAGTAACATAGTCTAGAGAAGTGTGT 57.835 37.037 0.00 0.00 0.00 3.72
72 73 8.614346 GGTAGTAACATAGTCTAGAGAAGTGTG 58.386 40.741 0.00 0.00 0.00 3.82
73 74 8.550585 AGGTAGTAACATAGTCTAGAGAAGTGT 58.449 37.037 0.00 0.00 0.00 3.55
74 75 8.967664 AGGTAGTAACATAGTCTAGAGAAGTG 57.032 38.462 0.00 0.00 0.00 3.16
75 76 8.212995 GGAGGTAGTAACATAGTCTAGAGAAGT 58.787 40.741 0.00 0.00 0.00 3.01
76 77 8.212312 TGGAGGTAGTAACATAGTCTAGAGAAG 58.788 40.741 0.00 0.00 0.00 2.85
77 78 8.098963 TGGAGGTAGTAACATAGTCTAGAGAA 57.901 38.462 0.00 0.00 0.00 2.87
78 79 7.687383 TGGAGGTAGTAACATAGTCTAGAGA 57.313 40.000 0.00 0.00 0.00 3.10
79 80 9.661563 CTATGGAGGTAGTAACATAGTCTAGAG 57.338 40.741 0.00 0.00 38.48 2.43
86 87 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
87 88 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
88 89 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
89 90 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
95 96 4.950361 TGTTTCTACCCACTATGGAGGTA 58.050 43.478 0.00 3.53 40.96 3.08
96 97 3.798515 TGTTTCTACCCACTATGGAGGT 58.201 45.455 0.00 1.66 40.96 3.85
97 98 5.373812 AATGTTTCTACCCACTATGGAGG 57.626 43.478 0.00 0.00 40.96 4.30
98 99 7.993183 ACATAAATGTTTCTACCCACTATGGAG 59.007 37.037 0.00 0.00 37.45 3.86
99 100 7.867921 ACATAAATGTTTCTACCCACTATGGA 58.132 34.615 0.00 0.00 37.45 3.41
100 101 9.273016 CTACATAAATGTTTCTACCCACTATGG 57.727 37.037 0.12 0.00 41.97 2.74
101 102 9.832445 ACTACATAAATGTTTCTACCCACTATG 57.168 33.333 0.12 0.00 41.97 2.23
102 103 9.832445 CACTACATAAATGTTTCTACCCACTAT 57.168 33.333 0.12 0.00 41.97 2.12
103 104 8.818860 ACACTACATAAATGTTTCTACCCACTA 58.181 33.333 0.12 0.00 41.97 2.74
104 105 7.686434 ACACTACATAAATGTTTCTACCCACT 58.314 34.615 0.12 0.00 41.97 4.00
105 106 7.604927 TGACACTACATAAATGTTTCTACCCAC 59.395 37.037 0.12 0.00 41.97 4.61
106 107 7.681679 TGACACTACATAAATGTTTCTACCCA 58.318 34.615 0.12 0.00 41.97 4.51
107 108 8.612619 CATGACACTACATAAATGTTTCTACCC 58.387 37.037 0.12 0.00 41.97 3.69
108 109 8.122952 GCATGACACTACATAAATGTTTCTACC 58.877 37.037 0.00 0.00 41.97 3.18
109 110 8.664798 TGCATGACACTACATAAATGTTTCTAC 58.335 33.333 0.00 0.00 41.97 2.59
110 111 8.785329 TGCATGACACTACATAAATGTTTCTA 57.215 30.769 0.00 0.00 41.97 2.10
111 112 7.686438 TGCATGACACTACATAAATGTTTCT 57.314 32.000 0.00 0.00 41.97 2.52
112 113 7.007367 CGTTGCATGACACTACATAAATGTTTC 59.993 37.037 0.00 0.00 41.97 2.78
113 114 6.801377 CGTTGCATGACACTACATAAATGTTT 59.199 34.615 0.00 0.00 41.97 2.83
114 115 6.148645 TCGTTGCATGACACTACATAAATGTT 59.851 34.615 0.00 0.00 41.97 2.71
115 116 5.641636 TCGTTGCATGACACTACATAAATGT 59.358 36.000 0.00 0.63 44.48 2.71
116 117 6.105657 TCGTTGCATGACACTACATAAATG 57.894 37.500 0.00 0.00 0.00 2.32
117 118 6.316140 ACATCGTTGCATGACACTACATAAAT 59.684 34.615 0.00 0.00 0.00 1.40
118 119 5.641636 ACATCGTTGCATGACACTACATAAA 59.358 36.000 0.00 0.00 0.00 1.40
119 120 5.175127 ACATCGTTGCATGACACTACATAA 58.825 37.500 0.00 0.00 0.00 1.90
120 121 4.754322 ACATCGTTGCATGACACTACATA 58.246 39.130 0.00 0.00 0.00 2.29
121 122 3.599343 ACATCGTTGCATGACACTACAT 58.401 40.909 0.00 0.00 0.00 2.29
122 123 3.038788 ACATCGTTGCATGACACTACA 57.961 42.857 0.00 0.00 0.00 2.74
123 124 5.718649 AATACATCGTTGCATGACACTAC 57.281 39.130 0.00 0.00 0.00 2.73
124 125 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
125 126 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
126 127 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
127 128 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
128 129 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
129 130 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
150 151 9.793259 TTTCAAGAAACAATGAGTCTATAACCT 57.207 29.630 0.00 0.00 0.00 3.50
155 156 9.071276 ACACATTTCAAGAAACAATGAGTCTAT 57.929 29.630 0.00 0.00 29.09 1.98
156 157 8.344831 CACACATTTCAAGAAACAATGAGTCTA 58.655 33.333 0.00 0.00 31.75 2.59
157 158 7.067372 TCACACATTTCAAGAAACAATGAGTCT 59.933 33.333 0.00 0.00 31.75 3.24
158 159 7.195646 TCACACATTTCAAGAAACAATGAGTC 58.804 34.615 0.00 0.00 31.75 3.36
159 160 7.099266 TCACACATTTCAAGAAACAATGAGT 57.901 32.000 0.00 0.00 33.60 3.41
160 161 7.358931 GCATCACACATTTCAAGAAACAATGAG 60.359 37.037 0.00 0.00 33.02 2.90
161 162 6.421501 GCATCACACATTTCAAGAAACAATGA 59.578 34.615 0.00 1.25 33.02 2.57
162 163 6.422701 AGCATCACACATTTCAAGAAACAATG 59.577 34.615 0.00 0.17 34.60 2.82
163 164 6.518493 AGCATCACACATTTCAAGAAACAAT 58.482 32.000 0.00 0.00 32.51 2.71
164 165 5.904941 AGCATCACACATTTCAAGAAACAA 58.095 33.333 0.00 0.00 32.51 2.83
165 166 5.507817 GGAGCATCACACATTTCAAGAAACA 60.508 40.000 0.00 0.00 36.25 2.83
166 167 4.919754 GGAGCATCACACATTTCAAGAAAC 59.080 41.667 0.00 0.00 36.25 2.78
167 168 4.320421 CGGAGCATCACACATTTCAAGAAA 60.320 41.667 0.00 0.00 36.25 2.52
168 169 3.189080 CGGAGCATCACACATTTCAAGAA 59.811 43.478 0.00 0.00 36.25 2.52
169 170 2.743664 CGGAGCATCACACATTTCAAGA 59.256 45.455 0.00 0.00 36.25 3.02
170 171 2.743664 TCGGAGCATCACACATTTCAAG 59.256 45.455 0.00 0.00 36.25 3.02
171 172 2.777094 TCGGAGCATCACACATTTCAA 58.223 42.857 0.00 0.00 36.25 2.69
172 173 2.470983 TCGGAGCATCACACATTTCA 57.529 45.000 0.00 0.00 36.25 2.69
173 174 4.572389 AGTTATCGGAGCATCACACATTTC 59.428 41.667 0.00 0.00 36.25 2.17
174 175 4.517285 AGTTATCGGAGCATCACACATTT 58.483 39.130 0.00 0.00 36.25 2.32
175 176 4.142609 AGTTATCGGAGCATCACACATT 57.857 40.909 0.00 0.00 36.25 2.71
176 177 3.827008 AGTTATCGGAGCATCACACAT 57.173 42.857 0.00 0.00 36.25 3.21
177 178 3.610040 AAGTTATCGGAGCATCACACA 57.390 42.857 0.00 0.00 36.25 3.72
178 179 3.491267 GCTAAGTTATCGGAGCATCACAC 59.509 47.826 0.00 0.00 36.25 3.82
179 180 3.384789 AGCTAAGTTATCGGAGCATCACA 59.615 43.478 0.00 0.00 37.40 3.58
180 181 3.983741 AGCTAAGTTATCGGAGCATCAC 58.016 45.455 0.00 0.00 37.40 3.06
181 182 4.827835 ACTAGCTAAGTTATCGGAGCATCA 59.172 41.667 0.00 0.00 37.40 3.07
182 183 5.379732 ACTAGCTAAGTTATCGGAGCATC 57.620 43.478 0.00 0.00 37.40 3.91
183 184 5.793030 AACTAGCTAAGTTATCGGAGCAT 57.207 39.130 0.00 0.00 46.85 3.79
200 201 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
201 202 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
202 203 2.330216 AGAGAGGTGCTTGTGGTAACT 58.670 47.619 0.00 0.00 37.61 2.24
203 204 2.841442 AGAGAGGTGCTTGTGGTAAC 57.159 50.000 0.00 0.00 0.00 2.50
204 205 4.530553 TGAATAGAGAGGTGCTTGTGGTAA 59.469 41.667 0.00 0.00 0.00 2.85
205 206 4.093743 TGAATAGAGAGGTGCTTGTGGTA 58.906 43.478 0.00 0.00 0.00 3.25
206 207 2.906389 TGAATAGAGAGGTGCTTGTGGT 59.094 45.455 0.00 0.00 0.00 4.16
207 208 3.616956 TGAATAGAGAGGTGCTTGTGG 57.383 47.619 0.00 0.00 0.00 4.17
208 209 7.615582 TTTAATGAATAGAGAGGTGCTTGTG 57.384 36.000 0.00 0.00 0.00 3.33
212 213 9.499479 CACATATTTAATGAATAGAGAGGTGCT 57.501 33.333 0.00 0.00 33.87 4.40
213 214 8.233190 GCACATATTTAATGAATAGAGAGGTGC 58.767 37.037 0.00 0.00 35.13 5.01
214 215 8.725148 GGCACATATTTAATGAATAGAGAGGTG 58.275 37.037 0.00 0.00 33.87 4.00
215 216 8.439971 TGGCACATATTTAATGAATAGAGAGGT 58.560 33.333 0.00 0.00 33.87 3.85
216 217 8.725148 GTGGCACATATTTAATGAATAGAGAGG 58.275 37.037 13.86 0.00 44.52 3.69
217 218 9.276590 TGTGGCACATATTTAATGAATAGAGAG 57.723 33.333 17.96 0.00 44.52 3.20
218 219 9.797642 ATGTGGCACATATTTAATGAATAGAGA 57.202 29.630 30.56 0.00 44.52 3.10
223 224 8.640651 TGCTTATGTGGCACATATTTAATGAAT 58.359 29.630 33.89 13.21 44.52 2.57
224 225 8.005192 TGCTTATGTGGCACATATTTAATGAA 57.995 30.769 33.89 20.49 44.52 2.57
225 226 7.579761 TGCTTATGTGGCACATATTTAATGA 57.420 32.000 33.89 19.68 44.52 2.57
226 227 8.645730 TTTGCTTATGTGGCACATATTTAATG 57.354 30.769 33.89 20.34 44.52 1.90
227 228 8.477256 ACTTTGCTTATGTGGCACATATTTAAT 58.523 29.630 33.89 15.77 44.52 1.40
228 229 7.835822 ACTTTGCTTATGTGGCACATATTTAA 58.164 30.769 33.89 25.24 44.52 1.52
229 230 7.403312 ACTTTGCTTATGTGGCACATATTTA 57.597 32.000 33.89 21.55 44.52 1.40
230 231 6.284891 ACTTTGCTTATGTGGCACATATTT 57.715 33.333 33.89 17.52 44.52 1.40
231 232 5.920193 ACTTTGCTTATGTGGCACATATT 57.080 34.783 33.89 17.87 44.52 1.28
232 233 5.185635 ACAACTTTGCTTATGTGGCACATAT 59.814 36.000 33.89 18.57 44.52 1.78
233 234 4.522405 ACAACTTTGCTTATGTGGCACATA 59.478 37.500 31.06 31.06 44.52 2.29
234 235 3.321682 ACAACTTTGCTTATGTGGCACAT 59.678 39.130 33.18 33.18 44.52 3.21
235 236 2.692557 ACAACTTTGCTTATGTGGCACA 59.307 40.909 24.36 24.36 39.55 4.57
236 237 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
237 238 5.242615 TCAATACAACTTTGCTTATGTGGCA 59.757 36.000 0.00 0.00 37.97 4.92
238 239 5.708948 TCAATACAACTTTGCTTATGTGGC 58.291 37.500 0.00 0.00 0.00 5.01
239 240 7.326789 CACTTCAATACAACTTTGCTTATGTGG 59.673 37.037 0.00 0.00 0.00 4.17
240 241 7.862372 ACACTTCAATACAACTTTGCTTATGTG 59.138 33.333 0.00 0.00 0.00 3.21
241 242 7.862372 CACACTTCAATACAACTTTGCTTATGT 59.138 33.333 0.00 0.00 0.00 2.29
242 243 7.862372 ACACACTTCAATACAACTTTGCTTATG 59.138 33.333 0.00 0.00 0.00 1.90
243 244 7.862372 CACACACTTCAATACAACTTTGCTTAT 59.138 33.333 0.00 0.00 0.00 1.73
244 245 7.066404 TCACACACTTCAATACAACTTTGCTTA 59.934 33.333 0.00 0.00 0.00 3.09
245 246 6.035843 CACACACTTCAATACAACTTTGCTT 58.964 36.000 0.00 0.00 0.00 3.91
246 247 5.356751 TCACACACTTCAATACAACTTTGCT 59.643 36.000 0.00 0.00 0.00 3.91
247 248 5.577835 TCACACACTTCAATACAACTTTGC 58.422 37.500 0.00 0.00 0.00 3.68
248 249 7.195646 ACATCACACACTTCAATACAACTTTG 58.804 34.615 0.00 0.00 0.00 2.77
249 250 7.333528 ACATCACACACTTCAATACAACTTT 57.666 32.000 0.00 0.00 0.00 2.66
250 251 6.942532 ACATCACACACTTCAATACAACTT 57.057 33.333 0.00 0.00 0.00 2.66
251 252 6.942532 AACATCACACACTTCAATACAACT 57.057 33.333 0.00 0.00 0.00 3.16
252 253 7.861630 AGTAACATCACACACTTCAATACAAC 58.138 34.615 0.00 0.00 0.00 3.32
253 254 7.172532 GGAGTAACATCACACACTTCAATACAA 59.827 37.037 0.00 0.00 0.00 2.41
254 255 6.649141 GGAGTAACATCACACACTTCAATACA 59.351 38.462 0.00 0.00 0.00 2.29
255 256 6.874134 AGGAGTAACATCACACACTTCAATAC 59.126 38.462 0.00 0.00 0.00 1.89
256 257 7.004555 AGGAGTAACATCACACACTTCAATA 57.995 36.000 0.00 0.00 0.00 1.90
257 258 5.869579 AGGAGTAACATCACACACTTCAAT 58.130 37.500 0.00 0.00 0.00 2.57
258 259 5.290493 AGGAGTAACATCACACACTTCAA 57.710 39.130 0.00 0.00 0.00 2.69
259 260 4.955811 AGGAGTAACATCACACACTTCA 57.044 40.909 0.00 0.00 0.00 3.02
260 261 6.456501 ACTTAGGAGTAACATCACACACTTC 58.543 40.000 0.00 0.00 33.32 3.01
261 262 6.420913 ACTTAGGAGTAACATCACACACTT 57.579 37.500 0.00 0.00 33.32 3.16
262 263 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
263 264 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
264 265 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
265 266 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
266 267 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
267 268 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
268 269 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
269 270 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
270 271 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
271 272 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
272 273 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
273 274 3.858696 TGGGGAGGAACTTAGGAGTAA 57.141 47.619 0.00 0.00 41.55 2.24
274 275 4.037927 CAATGGGGAGGAACTTAGGAGTA 58.962 47.826 0.00 0.00 41.55 2.59
275 276 2.846827 CAATGGGGAGGAACTTAGGAGT 59.153 50.000 0.00 0.00 41.55 3.85
276 277 2.846827 ACAATGGGGAGGAACTTAGGAG 59.153 50.000 0.00 0.00 41.55 3.69
277 278 2.576191 CACAATGGGGAGGAACTTAGGA 59.424 50.000 0.00 0.00 41.55 2.94
278 279 2.576191 TCACAATGGGGAGGAACTTAGG 59.424 50.000 0.00 0.00 41.55 2.69
279 280 3.610911 GTCACAATGGGGAGGAACTTAG 58.389 50.000 0.00 0.00 41.55 2.18
280 281 2.307686 GGTCACAATGGGGAGGAACTTA 59.692 50.000 0.00 0.00 41.55 2.24
281 282 1.075536 GGTCACAATGGGGAGGAACTT 59.924 52.381 0.00 0.00 41.55 2.66
283 284 0.404040 TGGTCACAATGGGGAGGAAC 59.596 55.000 0.00 0.00 0.00 3.62
284 285 0.698238 CTGGTCACAATGGGGAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
285 286 1.852157 GCTGGTCACAATGGGGAGGA 61.852 60.000 0.00 0.00 0.00 3.71
286 287 1.379044 GCTGGTCACAATGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
287 288 1.379044 GGCTGGTCACAATGGGGAG 60.379 63.158 0.00 0.00 0.00 4.30
288 289 0.548926 TAGGCTGGTCACAATGGGGA 60.549 55.000 0.00 0.00 0.00 4.81
289 290 0.331278 TTAGGCTGGTCACAATGGGG 59.669 55.000 0.00 0.00 0.00 4.96
290 291 1.818674 GTTTAGGCTGGTCACAATGGG 59.181 52.381 0.00 0.00 0.00 4.00
291 292 1.468520 CGTTTAGGCTGGTCACAATGG 59.531 52.381 0.00 0.00 0.00 3.16
292 293 2.422597 TCGTTTAGGCTGGTCACAATG 58.577 47.619 0.00 0.00 0.00 2.82
293 294 2.851263 TCGTTTAGGCTGGTCACAAT 57.149 45.000 0.00 0.00 0.00 2.71
294 295 2.158871 ACTTCGTTTAGGCTGGTCACAA 60.159 45.455 0.00 0.00 0.00 3.33
295 296 1.414919 ACTTCGTTTAGGCTGGTCACA 59.585 47.619 0.00 0.00 0.00 3.58
296 297 2.067013 GACTTCGTTTAGGCTGGTCAC 58.933 52.381 0.00 0.00 0.00 3.67
297 298 1.001633 GGACTTCGTTTAGGCTGGTCA 59.998 52.381 0.00 0.00 0.00 4.02
298 299 1.001633 TGGACTTCGTTTAGGCTGGTC 59.998 52.381 0.00 0.00 0.00 4.02
299 300 1.053424 TGGACTTCGTTTAGGCTGGT 58.947 50.000 0.00 0.00 0.00 4.00
300 301 2.178912 TTGGACTTCGTTTAGGCTGG 57.821 50.000 0.00 0.00 0.00 4.85
301 302 2.225727 GGTTTGGACTTCGTTTAGGCTG 59.774 50.000 0.00 0.00 0.00 4.85
302 303 2.501261 GGTTTGGACTTCGTTTAGGCT 58.499 47.619 0.00 0.00 0.00 4.58
303 304 1.538512 GGGTTTGGACTTCGTTTAGGC 59.461 52.381 0.00 0.00 0.00 3.93
304 305 2.156917 GGGGTTTGGACTTCGTTTAGG 58.843 52.381 0.00 0.00 0.00 2.69
305 306 2.156917 GGGGGTTTGGACTTCGTTTAG 58.843 52.381 0.00 0.00 0.00 1.85
306 307 1.493871 TGGGGGTTTGGACTTCGTTTA 59.506 47.619 0.00 0.00 0.00 2.01
307 308 0.259356 TGGGGGTTTGGACTTCGTTT 59.741 50.000 0.00 0.00 0.00 3.60
308 309 0.179001 CTGGGGGTTTGGACTTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
309 310 1.454539 CTGGGGGTTTGGACTTCGT 59.545 57.895 0.00 0.00 0.00 3.85
310 311 1.971695 GCTGGGGGTTTGGACTTCG 60.972 63.158 0.00 0.00 0.00 3.79
311 312 0.895559 CTGCTGGGGGTTTGGACTTC 60.896 60.000 0.00 0.00 0.00 3.01
312 313 1.153756 CTGCTGGGGGTTTGGACTT 59.846 57.895 0.00 0.00 0.00 3.01
512 527 0.446616 GTGGCTTTCGATCCGGTTTC 59.553 55.000 0.00 0.00 0.00 2.78
1046 1096 0.663568 CACCACCACGACGACTTCTC 60.664 60.000 0.00 0.00 0.00 2.87
1052 1102 3.299977 CCTCCACCACCACGACGA 61.300 66.667 0.00 0.00 0.00 4.20
1056 1106 2.203280 TTTGCCTCCACCACCACG 60.203 61.111 0.00 0.00 0.00 4.94
1112 1162 0.461961 GGCGGCTCTGTCTGTTATCT 59.538 55.000 0.00 0.00 0.00 1.98
1350 1403 1.630369 GGATGGATGGATCGATGGGAA 59.370 52.381 0.54 0.00 0.00 3.97
1414 1467 2.016393 CTGCCCGCAGACCTCGATTA 62.016 60.000 11.32 0.00 46.30 1.75
1441 1507 5.148651 ACTCTGTAAAACCGACAGCTAAT 57.851 39.130 0.00 0.00 43.37 1.73
1442 1508 4.595762 ACTCTGTAAAACCGACAGCTAA 57.404 40.909 0.00 0.00 43.37 3.09
1449 1515 3.746045 AGCTGAACTCTGTAAAACCGA 57.254 42.857 0.00 0.00 0.00 4.69
1466 1532 2.607187 CCGAAACACTCATACGAAGCT 58.393 47.619 0.00 0.00 0.00 3.74
1501 1567 3.048600 AGCAAGCATCCTATTCCTACCA 58.951 45.455 0.00 0.00 0.00 3.25
1524 1592 0.596083 GATCACGAGCCATCAGACCG 60.596 60.000 0.00 0.00 0.00 4.79
1591 1659 4.604156 TGTCAGGTGTCATCTCTAGACAT 58.396 43.478 1.57 0.00 46.52 3.06
1594 1669 3.020274 GCTGTCAGGTGTCATCTCTAGA 58.980 50.000 1.14 0.00 0.00 2.43
1608 1683 2.469274 ATCAACACCAGAGCTGTCAG 57.531 50.000 0.00 0.00 0.00 3.51
1679 1758 4.827087 CCGTGCTCGATGGCTGCT 62.827 66.667 10.21 0.00 39.71 4.24
1741 1820 4.393680 GGCCGTGTGAGTAATTATGTTCAA 59.606 41.667 0.00 0.00 0.00 2.69
1786 1865 8.076178 ACATGTCTTAACTGTGCTAAAAATCAC 58.924 33.333 0.00 0.00 0.00 3.06
1806 1885 8.856490 AGAAAACTGTACAATTTCAACATGTC 57.144 30.769 24.54 10.36 35.91 3.06
1807 1886 9.301153 GAAGAAAACTGTACAATTTCAACATGT 57.699 29.630 24.54 0.00 35.91 3.21
1808 1887 9.299963 TGAAGAAAACTGTACAATTTCAACATG 57.700 29.630 24.54 0.00 35.91 3.21
2126 2206 3.111484 TGGGCACATACTTATGACAGGA 58.889 45.455 3.19 0.00 37.15 3.86
2369 2449 7.546778 TGCGATAAAAAGATGCAAGTATGTA 57.453 32.000 0.00 0.00 31.69 2.29
2420 2500 6.831976 AGGAAGCGGATCAAAGTTATAATCT 58.168 36.000 0.00 0.00 0.00 2.40
2426 2506 4.000988 GTGAAGGAAGCGGATCAAAGTTA 58.999 43.478 0.00 0.00 0.00 2.24
2455 2535 3.576648 GTCAGAGAGGTTTTAGTGGTCG 58.423 50.000 0.00 0.00 0.00 4.79
2472 2552 4.678509 TTTGCCTGTAAAATAGCGTCAG 57.321 40.909 0.00 0.00 0.00 3.51
2512 2592 5.645497 GGCATTCTCTTCTTGTTGTATCTGT 59.355 40.000 0.00 0.00 0.00 3.41
2537 2617 1.733402 TTTTGCCCGTGCTGTTCTGG 61.733 55.000 0.00 0.00 38.71 3.86
2674 2754 6.477688 ACATCAAACAATCAGCACTTCAAAAG 59.522 34.615 0.00 0.00 0.00 2.27
2679 2759 6.437928 TGTTACATCAAACAATCAGCACTTC 58.562 36.000 0.00 0.00 36.45 3.01
2688 2768 8.030692 CACTGATTCCATGTTACATCAAACAAT 58.969 33.333 0.00 0.00 42.33 2.71
2730 2811 5.762218 CAGGTCCTTTAAGAATGATGGCTAG 59.238 44.000 0.00 0.00 0.00 3.42
2731 2812 5.428457 TCAGGTCCTTTAAGAATGATGGCTA 59.572 40.000 0.00 0.00 0.00 3.93
2768 2849 3.356290 GTCACTGATGGCCCATAGTTTT 58.644 45.455 0.00 0.00 0.00 2.43
2779 2860 1.556451 TCACTGATGGGTCACTGATGG 59.444 52.381 0.00 0.00 0.00 3.51
2780 2861 3.555527 ATCACTGATGGGTCACTGATG 57.444 47.619 0.00 0.00 36.88 3.07
2781 2862 4.521146 GAAATCACTGATGGGTCACTGAT 58.479 43.478 0.00 0.00 38.64 2.90
2782 2863 3.307691 GGAAATCACTGATGGGTCACTGA 60.308 47.826 0.00 0.00 33.59 3.41
2783 2864 3.012518 GGAAATCACTGATGGGTCACTG 58.987 50.000 0.00 0.00 0.00 3.66
2784 2865 2.915604 AGGAAATCACTGATGGGTCACT 59.084 45.455 0.00 0.00 0.00 3.41
2785 2866 3.054802 AGAGGAAATCACTGATGGGTCAC 60.055 47.826 0.00 0.00 0.00 3.67
2786 2867 3.184628 AGAGGAAATCACTGATGGGTCA 58.815 45.455 0.00 0.00 0.00 4.02
2787 2868 3.922171 AGAGGAAATCACTGATGGGTC 57.078 47.619 0.00 0.00 0.00 4.46
2788 2869 4.723789 ACATAGAGGAAATCACTGATGGGT 59.276 41.667 0.00 0.00 0.00 4.51
2789 2870 5.301835 ACATAGAGGAAATCACTGATGGG 57.698 43.478 0.00 0.00 0.00 4.00
2824 2905 4.025813 AGTTTATGCAAAGCAAAAGCAACG 60.026 37.500 0.00 0.00 43.62 4.10
2831 2912 8.364142 ACCAATACTTAGTTTATGCAAAGCAAA 58.636 29.630 0.00 0.00 43.62 3.68
2832 2913 7.891561 ACCAATACTTAGTTTATGCAAAGCAA 58.108 30.769 0.00 0.00 43.62 3.91
2914 2995 3.801114 AAAGTCCAAGAAACTGTTGGC 57.199 42.857 0.00 0.00 43.72 4.52
2931 3012 6.500684 TGCCTTTCTGTTATCTGCTTAAAG 57.499 37.500 0.00 0.00 0.00 1.85
3000 3081 4.628074 TGCGCTTATTATCACTAGGGTTC 58.372 43.478 9.73 0.00 0.00 3.62
3058 3139 4.439289 GCTAGGCTTTGGTTCATCATCAAC 60.439 45.833 0.00 0.00 0.00 3.18
3384 3466 5.299279 CCCTCACCATGCTCGTAAATAAATT 59.701 40.000 0.00 0.00 0.00 1.82
3414 3496 6.109359 ACACATCCTGACTAACTGAATTAGC 58.891 40.000 0.00 0.00 43.76 3.09
3609 3691 8.695456 ACCTGTGAACAAGAAATAATTTCAACT 58.305 29.630 0.00 0.00 42.10 3.16
3717 3799 4.305769 TGCCGAATCTCCATTTTTGTTTG 58.694 39.130 0.00 0.00 0.00 2.93
3820 3902 0.323725 AGAATGGCTGCCCGTCAAAT 60.324 50.000 17.53 0.00 0.00 2.32
3892 3974 1.371183 TGGAGTTCTGCCGTTCCAG 59.629 57.895 0.00 0.00 34.90 3.86
3924 4006 1.013596 TGAAGTTGCTTGTGTGTCCG 58.986 50.000 0.00 0.00 0.00 4.79
3931 4013 0.239347 GCTGCGATGAAGTTGCTTGT 59.761 50.000 0.00 0.00 38.13 3.16
3955 4037 3.369147 CAGTCGGATCATTCTGTTGACAC 59.631 47.826 0.00 0.00 0.00 3.67
3956 4038 3.258123 TCAGTCGGATCATTCTGTTGACA 59.742 43.478 0.00 0.00 0.00 3.58
3957 4039 3.849911 TCAGTCGGATCATTCTGTTGAC 58.150 45.455 0.00 0.00 0.00 3.18
3958 4040 3.763897 TCTCAGTCGGATCATTCTGTTGA 59.236 43.478 0.00 1.15 0.00 3.18
3959 4041 4.115401 TCTCAGTCGGATCATTCTGTTG 57.885 45.455 0.00 0.00 0.00 3.33
3960 4042 4.442612 CCATCTCAGTCGGATCATTCTGTT 60.443 45.833 0.00 0.00 0.00 3.16
3961 4043 3.069300 CCATCTCAGTCGGATCATTCTGT 59.931 47.826 0.00 0.00 0.00 3.41
3962 4044 3.320256 TCCATCTCAGTCGGATCATTCTG 59.680 47.826 0.00 0.00 0.00 3.02
3963 4045 3.320541 GTCCATCTCAGTCGGATCATTCT 59.679 47.826 0.00 0.00 0.00 2.40
3964 4046 3.320541 AGTCCATCTCAGTCGGATCATTC 59.679 47.826 0.00 0.00 0.00 2.67
3965 4047 3.303938 AGTCCATCTCAGTCGGATCATT 58.696 45.455 0.00 0.00 0.00 2.57
3966 4048 2.890311 GAGTCCATCTCAGTCGGATCAT 59.110 50.000 0.00 0.00 42.34 2.45
4111 4193 3.693085 CAGTACTACTTCCGCTTCCACTA 59.307 47.826 0.00 0.00 0.00 2.74
4114 4196 2.230508 CACAGTACTACTTCCGCTTCCA 59.769 50.000 0.00 0.00 0.00 3.53
4136 4218 1.884579 AGCATTGCCAGAGTTGTTCAG 59.115 47.619 4.70 0.00 0.00 3.02
4210 4304 1.708027 GTCGGATGCGTTACACTGC 59.292 57.895 6.49 0.00 0.00 4.40
4364 4458 7.169158 ACCACAAAATTGGATCGAAATATGT 57.831 32.000 0.00 0.00 39.24 2.29
4366 4460 9.354673 AGATACCACAAAATTGGATCGAAATAT 57.645 29.630 0.00 0.00 39.24 1.28
4367 4461 8.746052 AGATACCACAAAATTGGATCGAAATA 57.254 30.769 0.00 0.00 39.24 1.40
4388 4485 4.042311 CAGCTCCTCCTAGTAGGTGAGATA 59.958 50.000 28.06 7.51 40.34 1.98
4481 4580 0.179029 CAAACTGACCCTTCACCCGT 60.179 55.000 0.00 0.00 0.00 5.28
4529 4628 1.084289 GCAAACGGATGTCCACCTAC 58.916 55.000 0.00 0.00 35.14 3.18
4560 4672 0.031721 GACGACCAGAACACTCGGTT 59.968 55.000 0.00 0.00 44.10 4.44
4563 4675 1.442184 CCGACGACCAGAACACTCG 60.442 63.158 0.00 0.00 0.00 4.18
4565 4677 2.338984 GCCGACGACCAGAACACT 59.661 61.111 0.00 0.00 0.00 3.55
4718 4843 6.346758 CGTATACGGCAAACAGAAACAAGTAA 60.347 38.462 17.61 0.00 35.37 2.24
4722 4847 3.808726 ACGTATACGGCAAACAGAAACAA 59.191 39.130 27.62 0.00 44.95 2.83
4723 4848 3.391965 ACGTATACGGCAAACAGAAACA 58.608 40.909 27.62 0.00 44.95 2.83
4724 4849 4.145997 CAACGTATACGGCAAACAGAAAC 58.854 43.478 27.62 0.00 44.95 2.78
4725 4850 3.808726 ACAACGTATACGGCAAACAGAAA 59.191 39.130 27.62 0.00 44.95 2.52
4726 4851 3.391965 ACAACGTATACGGCAAACAGAA 58.608 40.909 27.62 0.00 44.95 3.02
4727 4852 3.029320 ACAACGTATACGGCAAACAGA 57.971 42.857 27.62 0.00 44.95 3.41
4728 4853 3.475242 CAACAACGTATACGGCAAACAG 58.525 45.455 27.62 11.88 44.95 3.16
4750 4875 1.334869 CCTTTGCAACCACACAGAGTC 59.665 52.381 0.00 0.00 0.00 3.36
4859 4988 1.068472 AGTACGGAAAGACGACAGCAG 60.068 52.381 0.00 0.00 37.61 4.24
4899 5033 4.371786 TGCACGGAAAATTACAAAATGCA 58.628 34.783 0.00 0.00 38.17 3.96
4915 5049 1.008538 GTTCAGCCAAACTGCACGG 60.009 57.895 0.00 0.00 46.76 4.94
4919 5053 2.204237 CCAAAAGTTCAGCCAAACTGC 58.796 47.619 2.35 0.00 46.76 4.40
4922 5056 1.581934 GGCCAAAAGTTCAGCCAAAC 58.418 50.000 0.00 0.00 45.07 2.93
4936 5070 3.248495 TCGTTACAATACGATGGCCAA 57.752 42.857 10.96 0.00 44.82 4.52
4944 5078 4.890378 TCTCTCTCGTTCGTTACAATACG 58.110 43.478 0.00 0.00 42.68 3.06
4945 5079 5.738225 CCTTCTCTCTCGTTCGTTACAATAC 59.262 44.000 0.00 0.00 0.00 1.89
4946 5080 5.163683 CCCTTCTCTCTCGTTCGTTACAATA 60.164 44.000 0.00 0.00 0.00 1.90
4947 5081 4.380655 CCCTTCTCTCTCGTTCGTTACAAT 60.381 45.833 0.00 0.00 0.00 2.71
4962 5097 0.187361 CCCTCTCGATCCCCTTCTCT 59.813 60.000 0.00 0.00 0.00 3.10
4990 5127 0.172352 CTCCAAGTCTCTCCACGCTC 59.828 60.000 0.00 0.00 0.00 5.03
5011 5154 6.874664 CCTTCCTCTGTTAGTAAAGTTCTTCC 59.125 42.308 0.00 0.00 0.00 3.46
5025 5168 2.836981 CTCACCTGATCCTTCCTCTGTT 59.163 50.000 0.00 0.00 0.00 3.16
5026 5169 2.043664 TCTCACCTGATCCTTCCTCTGT 59.956 50.000 0.00 0.00 0.00 3.41
5039 5182 3.134458 GACCAGTTCAAACTCTCACCTG 58.866 50.000 0.00 0.00 37.08 4.00
5136 5291 0.840617 TGTGACTTGGCAACCCTACA 59.159 50.000 0.00 0.00 0.00 2.74
5138 5293 0.840617 TGTGTGACTTGGCAACCCTA 59.159 50.000 0.00 0.00 0.00 3.53
5180 5335 3.295973 CTCAGTCTTAAGGGGGAGAGAG 58.704 54.545 1.85 0.00 0.00 3.20
5370 5528 2.972505 CGGAACCAACGCAGCTGT 60.973 61.111 16.64 0.00 0.00 4.40
5384 5542 3.733960 CTCTGTGTCGTCGGCGGA 61.734 66.667 10.62 0.00 38.89 5.54
5461 5619 2.027469 GGTCTTCCACGTATCCCAACTT 60.027 50.000 0.00 0.00 0.00 2.66
5464 5622 0.533491 CGGTCTTCCACGTATCCCAA 59.467 55.000 0.00 0.00 0.00 4.12
5488 5646 4.077184 CCGCCCGCAAGTCAGGTA 62.077 66.667 0.00 0.00 0.00 3.08
5563 5744 4.308458 CGGACGTCAACTGGCCCA 62.308 66.667 18.91 0.00 0.00 5.36
5603 5785 2.606961 CGAGCAAGTGCCGCTGAAA 61.607 57.895 0.00 0.00 40.63 2.69
5645 5827 2.117156 GCAGGCAGATCGCAACCAT 61.117 57.895 10.82 0.00 45.17 3.55
5646 5828 2.747460 GCAGGCAGATCGCAACCA 60.747 61.111 10.82 0.00 45.17 3.67
5757 5941 4.802051 GGAGCAATGCCCGCCTGA 62.802 66.667 0.00 0.00 0.00 3.86
5763 5947 0.107557 CCAATTTGGGAGCAATGCCC 60.108 55.000 7.60 2.60 46.22 5.36
5777 5961 1.856873 TGTGGGAGGGAGGCCAATT 60.857 57.895 5.01 0.00 0.00 2.32
5794 5978 2.437359 CCCCTTCAAGGCGCTCTG 60.437 66.667 7.64 5.00 32.73 3.35
5823 6007 3.264193 ACAACTCTACATTCCATGCCTCA 59.736 43.478 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.