Multiple sequence alignment - TraesCS5B01G320200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G320200 chr5B 100.000 3475 0 0 1 3475 505567690 505564216 0.000000e+00 6418
1 TraesCS5B01G320200 chr5D 88.288 2348 128 59 417 2687 418288669 418286392 0.000000e+00 2676
2 TraesCS5B01G320200 chr5D 85.240 603 49 21 2808 3375 418286301 418285704 5.000000e-163 584
3 TraesCS5B01G320200 chr5D 85.561 187 14 5 237 414 418288889 418288707 2.130000e-42 183
4 TraesCS5B01G320200 chr5D 93.506 77 5 0 3399 3475 418284152 418284076 7.880000e-22 115
5 TraesCS5B01G320200 chr5A 87.743 2366 137 63 443 2719 533073700 533071399 0.000000e+00 2621
6 TraesCS5B01G320200 chr5A 91.339 508 33 8 2936 3434 533071221 533070716 0.000000e+00 684
7 TraesCS5B01G320200 chr5A 92.929 99 7 0 140 238 513872685 513872783 1.010000e-30 145
8 TraesCS5B01G320200 chr2B 99.315 146 1 0 1 146 27587159 27587304 7.400000e-67 265
9 TraesCS5B01G320200 chr2B 92.697 178 8 4 1 175 105747531 105747706 5.760000e-63 252
10 TraesCS5B01G320200 chr4B 98.639 147 2 0 1 147 203203502 203203356 9.570000e-66 261
11 TraesCS5B01G320200 chr4B 83.402 241 35 5 1 237 627052826 627052587 5.840000e-53 219
12 TraesCS5B01G320200 chr3B 100.000 141 0 0 1 141 676270478 676270618 9.570000e-66 261
13 TraesCS5B01G320200 chr3B 98.611 144 2 0 1 144 248584095 248584238 4.450000e-64 255
14 TraesCS5B01G320200 chr3B 93.814 97 6 0 139 235 5606644 5606740 2.790000e-31 147
15 TraesCS5B01G320200 chr3B 92.929 99 7 0 139 237 486615233 486615331 1.010000e-30 145
16 TraesCS5B01G320200 chr3A 100.000 141 0 0 1 141 646678741 646678601 9.570000e-66 261
17 TraesCS5B01G320200 chr6B 99.296 142 1 0 1 142 190125202 190125061 1.240000e-64 257
18 TraesCS5B01G320200 chr6B 93.000 100 7 0 139 238 125538398 125538497 2.790000e-31 147
19 TraesCS5B01G320200 chr6B 92.157 102 8 0 139 240 57289802 57289701 1.010000e-30 145
20 TraesCS5B01G320200 chr7B 95.092 163 5 2 1 162 623811125 623811285 1.600000e-63 254
21 TraesCS5B01G320200 chr7B 92.929 99 7 0 140 238 742080835 742080933 1.010000e-30 145
22 TraesCS5B01G320200 chr7A 95.833 96 4 0 140 235 66277009 66276914 4.640000e-34 156
23 TraesCS5B01G320200 chr1D 92.929 99 7 0 139 237 492902851 492902753 1.010000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G320200 chr5B 505564216 505567690 3474 True 6418.0 6418 100.00000 1 3475 1 chr5B.!!$R1 3474
1 TraesCS5B01G320200 chr5D 418284076 418288889 4813 True 889.5 2676 88.14875 237 3475 4 chr5D.!!$R1 3238
2 TraesCS5B01G320200 chr5A 533070716 533073700 2984 True 1652.5 2621 89.54100 443 3434 2 chr5A.!!$R1 2991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 919 0.035725 GCCGGTTGGTTAACTAGCCT 60.036 55.0 19.93 0.0 36.99 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2629 2791 0.526524 GTGCACTACGGCTGAGCTAG 60.527 60.0 10.32 1.4 34.04 3.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 9.353431 ACCTAATAAATACATCATTGCATGACA 57.647 29.630 0.00 0.00 43.01 3.58
45 46 9.616634 CCTAATAAATACATCATTGCATGACAC 57.383 33.333 0.00 0.00 43.01 3.67
49 50 7.628769 AAATACATCATTGCATGACACTACA 57.371 32.000 0.00 0.00 43.01 2.74
50 51 7.812690 AATACATCATTGCATGACACTACAT 57.187 32.000 0.00 0.00 43.01 2.29
51 52 8.907222 AATACATCATTGCATGACACTACATA 57.093 30.769 0.00 0.00 43.01 2.29
52 53 6.856135 ACATCATTGCATGACACTACATAG 57.144 37.500 0.00 0.00 43.01 2.23
53 54 6.585416 ACATCATTGCATGACACTACATAGA 58.415 36.000 0.00 0.00 43.01 1.98
54 55 7.222161 ACATCATTGCATGACACTACATAGAT 58.778 34.615 0.00 0.00 43.01 1.98
55 56 7.172703 ACATCATTGCATGACACTACATAGATG 59.827 37.037 0.00 0.00 43.01 2.90
56 57 6.585416 TCATTGCATGACACTACATAGATGT 58.415 36.000 0.00 0.08 38.37 3.06
57 58 7.049754 TCATTGCATGACACTACATAGATGTT 58.950 34.615 0.00 0.00 36.98 2.71
58 59 6.908870 TTGCATGACACTACATAGATGTTC 57.091 37.500 0.00 0.00 41.97 3.18
59 60 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
60 61 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
61 62 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
62 63 6.642950 GCATGACACTACATAGATGTTCCTAC 59.357 42.308 0.00 0.00 41.97 3.18
63 64 6.710597 TGACACTACATAGATGTTCCTACC 57.289 41.667 0.00 0.00 41.97 3.18
64 65 5.597182 TGACACTACATAGATGTTCCTACCC 59.403 44.000 0.00 0.00 41.97 3.69
65 66 5.525484 ACACTACATAGATGTTCCTACCCA 58.475 41.667 0.00 0.00 41.97 4.51
66 67 5.363005 ACACTACATAGATGTTCCTACCCAC 59.637 44.000 0.00 0.00 41.97 4.61
67 68 5.598830 CACTACATAGATGTTCCTACCCACT 59.401 44.000 0.00 0.00 41.97 4.00
68 69 6.776116 CACTACATAGATGTTCCTACCCACTA 59.224 42.308 0.00 0.00 41.97 2.74
69 70 7.451877 CACTACATAGATGTTCCTACCCACTAT 59.548 40.741 0.00 0.00 41.97 2.12
70 71 6.672266 ACATAGATGTTCCTACCCACTATG 57.328 41.667 0.00 0.00 37.90 2.23
71 72 5.544176 ACATAGATGTTCCTACCCACTATGG 59.456 44.000 0.81 0.00 37.90 2.74
72 73 4.280789 AGATGTTCCTACCCACTATGGA 57.719 45.455 0.00 0.00 40.96 3.41
73 74 4.227197 AGATGTTCCTACCCACTATGGAG 58.773 47.826 0.00 0.00 40.96 3.86
74 75 2.759355 TGTTCCTACCCACTATGGAGG 58.241 52.381 0.00 0.00 40.96 4.30
75 76 2.045326 TGTTCCTACCCACTATGGAGGT 59.955 50.000 0.00 1.66 40.96 3.85
76 77 3.272818 TGTTCCTACCCACTATGGAGGTA 59.727 47.826 0.00 3.53 40.96 3.08
82 83 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
83 84 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
84 85 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
85 86 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
91 92 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
92 93 6.836714 TGGAGGTAGTAACATAGTCTAGGA 57.163 41.667 0.00 0.00 0.00 2.94
93 94 7.217028 TGGAGGTAGTAACATAGTCTAGGAA 57.783 40.000 0.00 0.00 0.00 3.36
94 95 7.645942 TGGAGGTAGTAACATAGTCTAGGAAA 58.354 38.462 0.00 0.00 0.00 3.13
95 96 7.778853 TGGAGGTAGTAACATAGTCTAGGAAAG 59.221 40.741 0.00 0.00 0.00 2.62
96 97 7.779326 GGAGGTAGTAACATAGTCTAGGAAAGT 59.221 40.741 0.00 0.00 0.00 2.66
97 98 8.522542 AGGTAGTAACATAGTCTAGGAAAGTG 57.477 38.462 0.00 0.00 0.00 3.16
98 99 8.114743 AGGTAGTAACATAGTCTAGGAAAGTGT 58.885 37.037 0.00 0.00 0.00 3.55
99 100 8.189460 GGTAGTAACATAGTCTAGGAAAGTGTG 58.811 40.741 0.00 0.00 0.00 3.82
100 101 8.954350 GTAGTAACATAGTCTAGGAAAGTGTGA 58.046 37.037 0.00 0.00 0.00 3.58
101 102 8.418597 AGTAACATAGTCTAGGAAAGTGTGAA 57.581 34.615 0.00 0.00 0.00 3.18
102 103 8.524487 AGTAACATAGTCTAGGAAAGTGTGAAG 58.476 37.037 0.00 0.00 0.00 3.02
103 104 6.919775 ACATAGTCTAGGAAAGTGTGAAGT 57.080 37.500 0.00 0.00 0.00 3.01
104 105 7.304497 ACATAGTCTAGGAAAGTGTGAAGTT 57.696 36.000 0.00 0.00 0.00 2.66
105 106 8.418597 ACATAGTCTAGGAAAGTGTGAAGTTA 57.581 34.615 0.00 0.00 0.00 2.24
106 107 8.305317 ACATAGTCTAGGAAAGTGTGAAGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
107 108 6.980416 AGTCTAGGAAAGTGTGAAGTTACT 57.020 37.500 0.00 0.00 0.00 2.24
108 109 9.750783 ATAGTCTAGGAAAGTGTGAAGTTACTA 57.249 33.333 0.00 0.00 0.00 1.82
109 110 8.113173 AGTCTAGGAAAGTGTGAAGTTACTAG 57.887 38.462 0.00 0.00 0.00 2.57
110 111 6.807720 GTCTAGGAAAGTGTGAAGTTACTAGC 59.192 42.308 0.00 0.00 0.00 3.42
111 112 5.810080 AGGAAAGTGTGAAGTTACTAGCT 57.190 39.130 0.00 0.00 0.00 3.32
112 113 6.176014 AGGAAAGTGTGAAGTTACTAGCTT 57.824 37.500 0.00 0.00 0.00 3.74
113 114 7.299246 AGGAAAGTGTGAAGTTACTAGCTTA 57.701 36.000 0.00 0.00 0.00 3.09
114 115 7.908453 AGGAAAGTGTGAAGTTACTAGCTTAT 58.092 34.615 0.00 0.00 0.00 1.73
115 116 7.819900 AGGAAAGTGTGAAGTTACTAGCTTATG 59.180 37.037 0.00 0.00 0.00 1.90
116 117 7.603024 GGAAAGTGTGAAGTTACTAGCTTATGT 59.397 37.037 0.00 0.00 0.00 2.29
117 118 8.904099 AAAGTGTGAAGTTACTAGCTTATGTT 57.096 30.769 0.00 0.00 0.00 2.71
118 119 8.535690 AAGTGTGAAGTTACTAGCTTATGTTC 57.464 34.615 0.00 0.00 0.00 3.18
119 120 7.897864 AGTGTGAAGTTACTAGCTTATGTTCT 58.102 34.615 0.00 0.00 0.00 3.01
120 121 8.368668 AGTGTGAAGTTACTAGCTTATGTTCTT 58.631 33.333 0.00 0.00 0.00 2.52
121 122 8.436200 GTGTGAAGTTACTAGCTTATGTTCTTG 58.564 37.037 0.00 0.00 0.00 3.02
122 123 7.117812 TGTGAAGTTACTAGCTTATGTTCTTGC 59.882 37.037 0.00 0.00 0.00 4.01
123 124 6.594159 TGAAGTTACTAGCTTATGTTCTTGCC 59.406 38.462 0.00 0.00 0.00 4.52
124 125 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
125 126 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
126 127 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
127 128 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
128 129 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
129 130 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
130 131 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
131 132 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
132 133 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
133 134 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
134 135 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
135 136 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
136 137 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
137 138 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
138 139 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
139 140 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
140 141 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
141 142 1.463674 CCCATTGTGACCAGCCTAAC 58.536 55.000 0.00 0.00 0.00 2.34
142 143 1.004745 CCCATTGTGACCAGCCTAACT 59.995 52.381 0.00 0.00 0.00 2.24
143 144 2.238646 CCCATTGTGACCAGCCTAACTA 59.761 50.000 0.00 0.00 0.00 2.24
144 145 3.117888 CCCATTGTGACCAGCCTAACTAT 60.118 47.826 0.00 0.00 0.00 2.12
145 146 4.130118 CCATTGTGACCAGCCTAACTATC 58.870 47.826 0.00 0.00 0.00 2.08
146 147 4.141620 CCATTGTGACCAGCCTAACTATCT 60.142 45.833 0.00 0.00 0.00 1.98
147 148 4.471904 TTGTGACCAGCCTAACTATCTG 57.528 45.455 0.00 0.00 0.00 2.90
148 149 3.441101 TGTGACCAGCCTAACTATCTGT 58.559 45.455 0.00 0.00 0.00 3.41
149 150 3.447586 TGTGACCAGCCTAACTATCTGTC 59.552 47.826 0.00 0.00 0.00 3.51
150 151 3.702045 GTGACCAGCCTAACTATCTGTCT 59.298 47.826 0.00 0.00 0.00 3.41
151 152 4.160626 GTGACCAGCCTAACTATCTGTCTT 59.839 45.833 0.00 0.00 0.00 3.01
152 153 4.402793 TGACCAGCCTAACTATCTGTCTTC 59.597 45.833 0.00 0.00 0.00 2.87
153 154 4.615513 ACCAGCCTAACTATCTGTCTTCT 58.384 43.478 0.00 0.00 0.00 2.85
154 155 4.647399 ACCAGCCTAACTATCTGTCTTCTC 59.353 45.833 0.00 0.00 0.00 2.87
155 156 4.646945 CCAGCCTAACTATCTGTCTTCTCA 59.353 45.833 0.00 0.00 0.00 3.27
156 157 5.304101 CCAGCCTAACTATCTGTCTTCTCAT 59.696 44.000 0.00 0.00 0.00 2.90
157 158 6.446318 CAGCCTAACTATCTGTCTTCTCATC 58.554 44.000 0.00 0.00 0.00 2.92
158 159 6.040278 CAGCCTAACTATCTGTCTTCTCATCA 59.960 42.308 0.00 0.00 0.00 3.07
159 160 6.609212 AGCCTAACTATCTGTCTTCTCATCAA 59.391 38.462 0.00 0.00 0.00 2.57
160 161 6.699642 GCCTAACTATCTGTCTTCTCATCAAC 59.300 42.308 0.00 0.00 0.00 3.18
161 162 7.417342 GCCTAACTATCTGTCTTCTCATCAACT 60.417 40.741 0.00 0.00 0.00 3.16
162 163 8.134895 CCTAACTATCTGTCTTCTCATCAACTC 58.865 40.741 0.00 0.00 0.00 3.01
163 164 7.473735 AACTATCTGTCTTCTCATCAACTCA 57.526 36.000 0.00 0.00 0.00 3.41
164 165 7.658525 ACTATCTGTCTTCTCATCAACTCAT 57.341 36.000 0.00 0.00 0.00 2.90
165 166 8.076910 ACTATCTGTCTTCTCATCAACTCATT 57.923 34.615 0.00 0.00 0.00 2.57
166 167 7.980662 ACTATCTGTCTTCTCATCAACTCATTG 59.019 37.037 0.00 0.00 37.14 2.82
167 168 4.934001 TCTGTCTTCTCATCAACTCATTGC 59.066 41.667 0.00 0.00 35.63 3.56
168 169 4.005650 TGTCTTCTCATCAACTCATTGCC 58.994 43.478 0.00 0.00 35.63 4.52
169 170 4.005650 GTCTTCTCATCAACTCATTGCCA 58.994 43.478 0.00 0.00 35.63 4.92
170 171 4.005650 TCTTCTCATCAACTCATTGCCAC 58.994 43.478 0.00 0.00 35.63 5.01
171 172 3.421919 TCTCATCAACTCATTGCCACA 57.578 42.857 0.00 0.00 35.63 4.17
172 173 3.959293 TCTCATCAACTCATTGCCACAT 58.041 40.909 0.00 0.00 35.63 3.21
173 174 5.101648 TCTCATCAACTCATTGCCACATA 57.898 39.130 0.00 0.00 35.63 2.29
174 175 5.499313 TCTCATCAACTCATTGCCACATAA 58.501 37.500 0.00 0.00 35.63 1.90
175 176 5.587443 TCTCATCAACTCATTGCCACATAAG 59.413 40.000 0.00 0.00 35.63 1.73
176 177 4.096833 TCATCAACTCATTGCCACATAAGC 59.903 41.667 0.00 0.00 35.63 3.09
177 178 3.419943 TCAACTCATTGCCACATAAGCA 58.580 40.909 0.00 0.00 38.81 3.91
207 208 4.436242 GAGTTGGACTCGATGTTACTGA 57.564 45.455 0.00 0.00 35.28 3.41
208 209 5.000012 GAGTTGGACTCGATGTTACTGAT 58.000 43.478 0.00 0.00 35.28 2.90
209 210 4.748892 AGTTGGACTCGATGTTACTGATG 58.251 43.478 0.00 0.00 0.00 3.07
210 211 4.462834 AGTTGGACTCGATGTTACTGATGA 59.537 41.667 0.00 0.00 0.00 2.92
211 212 5.047306 AGTTGGACTCGATGTTACTGATGAA 60.047 40.000 0.00 0.00 0.00 2.57
212 213 4.998788 TGGACTCGATGTTACTGATGAAG 58.001 43.478 0.00 0.00 0.00 3.02
213 214 4.462834 TGGACTCGATGTTACTGATGAAGT 59.537 41.667 0.00 0.00 43.40 3.01
214 215 5.047306 TGGACTCGATGTTACTGATGAAGTT 60.047 40.000 0.00 0.00 40.56 2.66
215 216 6.152154 TGGACTCGATGTTACTGATGAAGTTA 59.848 38.462 0.00 0.00 40.56 2.24
216 217 6.472808 GGACTCGATGTTACTGATGAAGTTAC 59.527 42.308 0.00 0.00 40.56 2.50
217 218 7.159322 ACTCGATGTTACTGATGAAGTTACT 57.841 36.000 0.00 0.00 38.87 2.24
218 219 7.603651 ACTCGATGTTACTGATGAAGTTACTT 58.396 34.615 0.00 0.00 38.87 2.24
219 220 7.755822 ACTCGATGTTACTGATGAAGTTACTTC 59.244 37.037 17.34 17.34 38.87 3.01
220 221 7.033791 TCGATGTTACTGATGAAGTTACTTCC 58.966 38.462 20.69 8.28 38.45 3.46
221 222 6.811665 CGATGTTACTGATGAAGTTACTTCCA 59.188 38.462 20.69 12.08 38.45 3.53
222 223 7.201444 CGATGTTACTGATGAAGTTACTTCCAC 60.201 40.741 20.69 14.80 38.45 4.02
223 224 7.062749 TGTTACTGATGAAGTTACTTCCACT 57.937 36.000 20.69 7.08 38.87 4.00
224 225 6.929049 TGTTACTGATGAAGTTACTTCCACTG 59.071 38.462 20.69 18.21 38.87 3.66
225 226 5.552870 ACTGATGAAGTTACTTCCACTGT 57.447 39.130 20.69 18.72 39.51 3.55
226 227 5.300752 ACTGATGAAGTTACTTCCACTGTG 58.699 41.667 20.69 0.00 39.51 3.66
227 228 4.641396 TGATGAAGTTACTTCCACTGTGG 58.359 43.478 20.86 20.86 39.51 4.17
228 229 2.846193 TGAAGTTACTTCCACTGTGGC 58.154 47.619 22.02 6.85 39.51 5.01
229 230 2.438021 TGAAGTTACTTCCACTGTGGCT 59.562 45.455 22.02 9.13 39.51 4.75
230 231 3.644265 TGAAGTTACTTCCACTGTGGCTA 59.356 43.478 22.02 11.13 39.51 3.93
231 232 3.963428 AGTTACTTCCACTGTGGCTAG 57.037 47.619 22.02 21.02 37.47 3.42
232 233 3.240302 AGTTACTTCCACTGTGGCTAGT 58.760 45.455 26.49 26.49 37.47 2.57
233 234 3.258622 AGTTACTTCCACTGTGGCTAGTC 59.741 47.826 26.85 18.17 37.47 2.59
234 235 2.016905 ACTTCCACTGTGGCTAGTCT 57.983 50.000 22.02 4.38 37.47 3.24
235 236 2.330216 ACTTCCACTGTGGCTAGTCTT 58.670 47.619 22.02 3.73 37.47 3.01
253 254 2.635915 TCTTAGGCTGTCCCGAAAGAAA 59.364 45.455 0.00 0.00 37.47 2.52
255 256 2.586648 AGGCTGTCCCGAAAGAAAAT 57.413 45.000 0.00 0.00 39.21 1.82
264 265 2.231235 CCCGAAAGAAAATTGGACCCTG 59.769 50.000 0.00 0.00 0.00 4.45
287 297 2.032054 GCACAGGTATACGTACGCTACA 59.968 50.000 22.50 6.46 0.00 2.74
335 345 3.702048 GGGACCAGCAGCCACGTA 61.702 66.667 0.00 0.00 0.00 3.57
338 348 3.665675 GACCAGCAGCCACGTAGGG 62.666 68.421 6.23 0.00 38.09 3.53
347 357 3.195002 CACGTAGGGCATGGCACG 61.195 66.667 24.50 24.50 36.86 5.34
348 358 3.702048 ACGTAGGGCATGGCACGT 61.702 61.111 25.63 25.63 42.36 4.49
349 359 3.195002 CGTAGGGCATGGCACGTG 61.195 66.667 22.06 12.28 36.86 4.49
350 360 2.046314 GTAGGGCATGGCACGTGT 60.046 61.111 22.06 2.24 36.86 4.49
389 399 3.011517 AAGCCTCGCTCCCACCAT 61.012 61.111 0.00 0.00 38.25 3.55
409 419 3.695606 GAGAGACGCCACCTGCCA 61.696 66.667 0.00 0.00 36.24 4.92
572 622 3.788616 AACCGCGACGTTTCCCGAA 62.789 57.895 8.23 0.00 40.70 4.30
657 716 1.437547 CCCCCTATAACTCCCTAGCCT 59.562 57.143 0.00 0.00 0.00 4.58
731 797 4.641645 CCCCTGTCTGTGCCGCAA 62.642 66.667 0.00 0.00 0.00 4.85
809 875 2.027073 CGAGGCGTGCAAGCTACAA 61.027 57.895 23.72 0.00 37.29 2.41
818 884 1.845809 GCAAGCTACAACGTGCTGCT 61.846 55.000 0.00 0.00 41.15 4.24
819 885 0.588252 CAAGCTACAACGTGCTGCTT 59.412 50.000 10.97 10.97 38.89 3.91
822 888 0.868406 GCTACAACGTGCTGCTTCTT 59.132 50.000 0.00 0.00 0.00 2.52
853 919 0.035725 GCCGGTTGGTTAACTAGCCT 60.036 55.000 19.93 0.00 36.99 4.58
934 1002 1.261480 TCAGCTCCCACTTCTGTCTC 58.739 55.000 0.00 0.00 0.00 3.36
935 1003 1.203112 TCAGCTCCCACTTCTGTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
1160 1237 4.878397 GGTAAGAAGAATCACATCCACCTG 59.122 45.833 0.00 0.00 0.00 4.00
1173 1263 1.668101 CCACCTGCCGTCTCCTCTAC 61.668 65.000 0.00 0.00 0.00 2.59
1176 1266 1.388065 CCTGCCGTCTCCTCTACCTG 61.388 65.000 0.00 0.00 0.00 4.00
1194 1284 3.822192 CCGCCGGTGACTCGATCA 61.822 66.667 18.79 0.00 33.79 2.92
1205 1295 1.905687 GACTCGATCAACTGACGAACG 59.094 52.381 0.00 0.00 35.70 3.95
1230 1320 3.118920 TCGGATCGGATGCTCTGTTTTTA 60.119 43.478 7.91 0.00 0.00 1.52
1232 1322 4.084328 CGGATCGGATGCTCTGTTTTTATC 60.084 45.833 7.91 0.00 0.00 1.75
1233 1323 4.214332 GGATCGGATGCTCTGTTTTTATCC 59.786 45.833 1.86 0.00 35.16 2.59
1234 1324 4.487714 TCGGATGCTCTGTTTTTATCCT 57.512 40.909 0.00 0.00 36.11 3.24
1235 1325 4.843728 TCGGATGCTCTGTTTTTATCCTT 58.156 39.130 0.00 0.00 36.11 3.36
1236 1326 4.635765 TCGGATGCTCTGTTTTTATCCTTG 59.364 41.667 0.00 0.00 36.11 3.61
1237 1327 4.676546 GGATGCTCTGTTTTTATCCTTGC 58.323 43.478 0.00 0.00 35.53 4.01
1238 1328 3.829886 TGCTCTGTTTTTATCCTTGCG 57.170 42.857 0.00 0.00 0.00 4.85
1239 1329 3.146066 TGCTCTGTTTTTATCCTTGCGT 58.854 40.909 0.00 0.00 0.00 5.24
1311 1401 2.448582 AAGGTGCTGTTCGTGGGGA 61.449 57.895 0.00 0.00 0.00 4.81
1469 1559 3.998672 GACGAGGTGGTGGCCGAA 61.999 66.667 0.00 0.00 0.00 4.30
1600 1690 3.078836 CCCCGTGGTACGTCCCAT 61.079 66.667 2.10 0.00 40.58 4.00
1602 1692 2.103538 CCGTGGTACGTCCCATCG 59.896 66.667 2.10 8.96 40.58 3.84
1603 1693 2.581409 CGTGGTACGTCCCATCGC 60.581 66.667 2.10 0.00 36.74 4.58
1604 1694 2.574929 GTGGTACGTCCCATCGCA 59.425 61.111 2.10 0.00 36.74 5.10
1606 1696 2.581409 GGTACGTCCCATCGCACG 60.581 66.667 0.00 0.00 41.90 5.34
1608 1698 1.870901 GTACGTCCCATCGCACGTC 60.871 63.158 0.55 0.00 46.04 4.34
1618 1708 4.175489 CGCACGTCCCTCGATCGT 62.175 66.667 15.94 0.00 42.86 3.73
1660 1754 2.400798 GCGCATCCACACACGATG 59.599 61.111 0.30 0.00 40.13 3.84
1664 1758 0.447801 GCATCCACACACGATGTTCC 59.552 55.000 0.00 0.00 40.64 3.62
1665 1759 0.721154 CATCCACACACGATGTTCCG 59.279 55.000 0.00 0.00 40.64 4.30
1667 1761 2.469847 CACACACGATGTTCCGCG 59.530 61.111 0.00 0.00 40.64 6.46
1668 1762 2.028484 ACACACGATGTTCCGCGT 59.972 55.556 4.92 0.00 38.98 6.01
1670 1764 0.731514 ACACACGATGTTCCGCGTAG 60.732 55.000 4.92 0.00 38.98 3.51
1671 1765 0.731514 CACACGATGTTCCGCGTAGT 60.732 55.000 4.92 0.00 38.92 2.73
1672 1766 0.804364 ACACGATGTTCCGCGTAGTA 59.196 50.000 4.92 0.00 38.92 1.82
1673 1767 1.202110 ACACGATGTTCCGCGTAGTAG 60.202 52.381 4.92 0.00 38.92 2.57
1674 1768 1.063027 CACGATGTTCCGCGTAGTAGA 59.937 52.381 4.92 0.00 38.92 2.59
1675 1769 1.063174 ACGATGTTCCGCGTAGTAGAC 59.937 52.381 4.92 0.00 39.21 2.59
1676 1770 1.329906 CGATGTTCCGCGTAGTAGACT 59.670 52.381 4.92 0.00 0.00 3.24
1677 1771 2.223203 CGATGTTCCGCGTAGTAGACTT 60.223 50.000 4.92 0.00 0.00 3.01
1678 1772 2.624316 TGTTCCGCGTAGTAGACTTG 57.376 50.000 4.92 0.00 0.00 3.16
1692 1786 2.779506 AGACTTGGACCACGAATTTCC 58.220 47.619 4.73 0.00 0.00 3.13
1694 1788 3.146847 GACTTGGACCACGAATTTCCTT 58.853 45.455 4.73 0.00 0.00 3.36
1695 1789 3.562182 ACTTGGACCACGAATTTCCTTT 58.438 40.909 4.73 0.00 0.00 3.11
1696 1790 4.721132 ACTTGGACCACGAATTTCCTTTA 58.279 39.130 4.73 0.00 0.00 1.85
1697 1791 4.760204 ACTTGGACCACGAATTTCCTTTAG 59.240 41.667 4.73 0.00 0.00 1.85
1698 1792 4.360951 TGGACCACGAATTTCCTTTAGT 57.639 40.909 0.00 0.00 0.00 2.24
1699 1793 4.721132 TGGACCACGAATTTCCTTTAGTT 58.279 39.130 0.00 0.00 0.00 2.24
1707 1801 5.237779 ACGAATTTCCTTTAGTTTGCGAGAA 59.762 36.000 0.00 0.00 0.00 2.87
1712 1806 7.692908 TTTCCTTTAGTTTGCGAGAATTTTG 57.307 32.000 0.00 0.00 0.00 2.44
1714 1808 5.533154 TCCTTTAGTTTGCGAGAATTTTGGA 59.467 36.000 0.00 0.00 0.00 3.53
1722 1816 2.664698 GCGAGAATTTTGGACCACGAAC 60.665 50.000 0.00 0.00 0.00 3.95
1736 1830 1.468520 CACGAACTCGATGGCCAATTT 59.531 47.619 10.96 0.00 43.02 1.82
1867 1965 6.560253 TTGAACTAGGTCATCTTTTGCTTC 57.440 37.500 12.20 0.00 0.00 3.86
1936 2037 7.997482 TCCTGAGTTAATCATACTACTGTGAC 58.003 38.462 0.00 0.00 37.28 3.67
1953 2054 2.681848 GTGACCTCAAGCTGATTGATGG 59.318 50.000 8.97 13.96 46.71 3.51
1958 2059 3.564644 CCTCAAGCTGATTGATGGCTTAG 59.435 47.826 8.97 0.00 46.71 2.18
2003 2107 8.613613 TTAAATGTGCAGCGATTTATAAAGTG 57.386 30.769 3.94 0.06 0.00 3.16
2231 2347 0.923358 ACTTCCACTCCAACAACCCA 59.077 50.000 0.00 0.00 0.00 4.51
2349 2486 2.278857 CGGACGAGAAGGCGATGG 60.279 66.667 0.00 0.00 34.83 3.51
2351 2488 2.423898 GGACGAGAAGGCGATGGGA 61.424 63.158 0.00 0.00 34.83 4.37
2352 2489 1.742768 GACGAGAAGGCGATGGGAT 59.257 57.895 0.00 0.00 34.83 3.85
2429 2566 4.864334 CTCATCCCCTGGCCGCAC 62.864 72.222 0.00 0.00 0.00 5.34
2551 2700 3.424300 ATGCAACGCAGCGCATAT 58.576 50.000 16.61 1.35 46.06 1.78
2648 2810 0.526524 CTAGCTCAGCCGTAGTGCAC 60.527 60.000 9.40 9.40 0.00 4.57
2675 2838 8.246180 TCTTAGGTTAGTCAGGTAAATGTAACG 58.754 37.037 0.00 0.00 0.00 3.18
2696 2859 0.250038 CATGGGTGTGGCGATCTAGG 60.250 60.000 0.00 0.00 0.00 3.02
2698 2861 0.907704 TGGGTGTGGCGATCTAGGTT 60.908 55.000 0.00 0.00 0.00 3.50
2702 2865 3.391049 GGTGTGGCGATCTAGGTTAATC 58.609 50.000 0.00 0.00 0.00 1.75
2703 2866 3.391049 GTGTGGCGATCTAGGTTAATCC 58.609 50.000 0.00 0.00 0.00 3.01
2719 2887 7.816411 AGGTTAATCCTGGCTTGTAAATAGAT 58.184 34.615 0.00 0.00 46.19 1.98
2720 2888 8.282256 AGGTTAATCCTGGCTTGTAAATAGATT 58.718 33.333 0.00 0.00 46.19 2.40
2722 2890 9.736023 GTTAATCCTGGCTTGTAAATAGATTTG 57.264 33.333 0.00 0.00 0.00 2.32
2723 2891 7.961326 AATCCTGGCTTGTAAATAGATTTGT 57.039 32.000 0.00 0.00 0.00 2.83
2724 2892 7.961326 ATCCTGGCTTGTAAATAGATTTGTT 57.039 32.000 0.00 0.00 0.00 2.83
2725 2893 7.775053 TCCTGGCTTGTAAATAGATTTGTTT 57.225 32.000 0.00 0.00 0.00 2.83
2726 2894 8.871629 TCCTGGCTTGTAAATAGATTTGTTTA 57.128 30.769 0.00 0.00 0.00 2.01
2744 2918 2.917701 TATTTTCAGGCGTCGTACGA 57.082 45.000 15.28 15.28 46.05 3.43
2745 2919 2.288961 ATTTTCAGGCGTCGTACGAT 57.711 45.000 22.57 1.58 46.05 3.73
2746 2920 2.917701 TTTTCAGGCGTCGTACGATA 57.082 45.000 22.57 0.00 46.05 2.92
2768 2942 3.573967 ACGAGCAAAGAAATCATTTGGGT 59.426 39.130 0.00 0.00 37.96 4.51
2776 2950 7.816995 GCAAAGAAATCATTTGGGTGTACAATA 59.183 33.333 0.00 0.00 37.96 1.90
2777 2951 9.139174 CAAAGAAATCATTTGGGTGTACAATAC 57.861 33.333 0.00 0.00 34.66 1.89
2792 2966 7.169308 GGTGTACAATACAACTAAGATCGATGG 59.831 40.741 0.54 0.00 42.99 3.51
2793 2967 7.919091 GTGTACAATACAACTAAGATCGATGGA 59.081 37.037 0.54 0.00 40.93 3.41
2795 2969 7.348080 ACAATACAACTAAGATCGATGGAGA 57.652 36.000 0.54 0.00 0.00 3.71
2797 2971 8.085296 ACAATACAACTAAGATCGATGGAGATC 58.915 37.037 0.54 0.00 45.45 2.75
2806 2980 3.198409 TCGATGGAGATCATGTTTGGG 57.802 47.619 0.00 0.00 35.97 4.12
2807 2981 2.505407 TCGATGGAGATCATGTTTGGGT 59.495 45.455 0.00 0.00 35.97 4.51
2815 3001 5.221541 GGAGATCATGTTTGGGTAGTAGGAG 60.222 48.000 0.00 0.00 0.00 3.69
2826 3012 3.432326 GGGTAGTAGGAGCATTTCACTGG 60.432 52.174 0.00 0.00 0.00 4.00
2831 3017 2.508526 AGGAGCATTTCACTGGTTCAC 58.491 47.619 0.00 0.00 0.00 3.18
2859 3045 2.031258 TGTTCGCACTTGGAAGTTGA 57.969 45.000 0.00 0.00 37.08 3.18
2862 3048 3.181501 TGTTCGCACTTGGAAGTTGAAAG 60.182 43.478 5.83 0.00 37.08 2.62
2864 3050 3.275143 TCGCACTTGGAAGTTGAAAGAA 58.725 40.909 1.99 0.00 37.08 2.52
2865 3051 3.064820 TCGCACTTGGAAGTTGAAAGAAC 59.935 43.478 1.99 0.00 37.08 3.01
2866 3052 3.065371 CGCACTTGGAAGTTGAAAGAACT 59.935 43.478 1.99 0.00 37.08 3.01
2867 3053 4.354587 GCACTTGGAAGTTGAAAGAACTG 58.645 43.478 0.00 0.00 37.08 3.16
2868 3054 4.734695 GCACTTGGAAGTTGAAAGAACTGG 60.735 45.833 0.00 0.00 37.08 4.00
2869 3055 4.640201 CACTTGGAAGTTGAAAGAACTGGA 59.360 41.667 0.00 0.00 37.08 3.86
2901 3087 4.917415 GTGTACGTAGTGGAATAAACGTGT 59.083 41.667 9.39 0.00 46.92 4.49
2906 3092 4.445052 CGTAGTGGAATAAACGTGTGTGAA 59.555 41.667 0.00 0.00 0.00 3.18
2913 3099 8.114290 GTGGAATAAACGTGTGTGAATATACTG 58.886 37.037 0.00 0.00 0.00 2.74
2922 3108 6.637365 GTGTGTGAATATACTGATTACACGC 58.363 40.000 0.00 0.00 39.66 5.34
2976 3166 2.442272 GGACGGCTCTGGGCTCTA 60.442 66.667 0.00 0.00 41.46 2.43
2988 3178 1.654954 GGGCTCTAGAGTCGTTGCGA 61.655 60.000 20.75 0.00 32.85 5.10
3003 3193 0.380378 TGCGAGTTTGGCAACTGTTC 59.620 50.000 0.00 0.00 43.79 3.18
3105 3318 4.187056 GGGAACTTTCTCGCGAGG 57.813 61.111 33.98 21.22 0.00 4.63
3191 3404 1.342174 GACACGTTGAGGTGGAAGGTA 59.658 52.381 8.48 0.00 42.23 3.08
3198 3411 4.070009 GTTGAGGTGGAAGGTAATTTCGT 58.930 43.478 0.00 0.00 0.00 3.85
3201 3414 4.758165 TGAGGTGGAAGGTAATTTCGTTTC 59.242 41.667 0.00 0.00 0.00 2.78
3203 3416 3.120095 GGTGGAAGGTAATTTCGTTTCGG 60.120 47.826 0.00 0.00 0.00 4.30
3206 3419 4.213906 TGGAAGGTAATTTCGTTTCGGTTC 59.786 41.667 0.00 0.00 0.00 3.62
3207 3420 4.213906 GGAAGGTAATTTCGTTTCGGTTCA 59.786 41.667 0.00 0.00 0.00 3.18
3208 3421 5.277925 GGAAGGTAATTTCGTTTCGGTTCAA 60.278 40.000 0.00 0.00 0.00 2.69
3209 3422 5.952526 AGGTAATTTCGTTTCGGTTCAAT 57.047 34.783 0.00 0.00 0.00 2.57
3255 3475 2.664851 CTTTGTCTGCACCCGCGA 60.665 61.111 8.23 0.00 42.97 5.87
3282 3502 0.941542 TGCGTACAAGCCTTTGACAC 59.058 50.000 0.00 0.00 37.73 3.67
3300 3520 2.233186 ACACCCTTCTTCTACCGCTAAC 59.767 50.000 0.00 0.00 0.00 2.34
3346 3567 3.241322 CACGTCGTTTCGAGTTTACTGTT 59.759 43.478 0.00 0.00 36.23 3.16
3353 3575 1.265095 TCGAGTTTACTGTTCGCGTCT 59.735 47.619 5.77 0.00 34.52 4.18
3360 3582 0.598562 ACTGTTCGCGTCTCAGTGAT 59.401 50.000 23.49 7.74 40.29 3.06
3361 3583 1.810755 ACTGTTCGCGTCTCAGTGATA 59.189 47.619 23.49 0.00 40.29 2.15
3429 5181 1.168714 GAAAAGATTGGCCAGCTCGT 58.831 50.000 5.11 2.51 0.00 4.18
3441 5193 0.179187 CAGCTCGTGAGTCGTTCGAT 60.179 55.000 0.00 0.00 40.80 3.59
3443 5195 1.134530 GCTCGTGAGTCGTTCGATGG 61.135 60.000 0.00 0.00 40.80 3.51
3472 5224 4.711980 GCTGTACGATCGTCCCTG 57.288 61.111 26.48 19.70 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.585416 ACATCTATGTAGTGTCATGCAATGA 58.415 36.000 0.00 0.00 45.34 2.57
33 34 6.856135 ACATCTATGTAGTGTCATGCAATG 57.144 37.500 0.00 0.00 42.25 2.82
34 35 6.484643 GGAACATCTATGTAGTGTCATGCAAT 59.515 38.462 0.00 0.00 40.80 3.56
35 36 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
36 37 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
37 38 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
38 39 7.148641 GGTAGGAACATCTATGTAGTGTCATG 58.851 42.308 0.00 0.00 40.80 3.07
39 40 6.267928 GGGTAGGAACATCTATGTAGTGTCAT 59.732 42.308 0.00 0.00 40.80 3.06
40 41 5.597182 GGGTAGGAACATCTATGTAGTGTCA 59.403 44.000 0.00 0.00 40.80 3.58
41 42 5.597182 TGGGTAGGAACATCTATGTAGTGTC 59.403 44.000 0.00 0.00 40.80 3.67
42 43 5.363005 GTGGGTAGGAACATCTATGTAGTGT 59.637 44.000 0.00 0.00 40.80 3.55
43 44 5.598830 AGTGGGTAGGAACATCTATGTAGTG 59.401 44.000 0.00 0.00 40.80 2.74
44 45 5.778542 AGTGGGTAGGAACATCTATGTAGT 58.221 41.667 0.00 0.00 40.80 2.73
45 46 7.093727 CCATAGTGGGTAGGAACATCTATGTAG 60.094 44.444 0.00 0.00 35.14 2.74
46 47 6.724441 CCATAGTGGGTAGGAACATCTATGTA 59.276 42.308 0.00 0.00 35.14 2.29
47 48 5.544176 CCATAGTGGGTAGGAACATCTATGT 59.456 44.000 0.00 0.00 36.83 2.29
48 49 5.780282 TCCATAGTGGGTAGGAACATCTATG 59.220 44.000 0.00 0.00 38.32 2.23
49 50 5.977533 TCCATAGTGGGTAGGAACATCTAT 58.022 41.667 0.00 0.00 38.32 1.98
50 51 5.394738 CTCCATAGTGGGTAGGAACATCTA 58.605 45.833 0.00 0.00 38.32 1.98
51 52 4.227197 CTCCATAGTGGGTAGGAACATCT 58.773 47.826 0.00 0.00 38.32 2.90
52 53 3.325135 CCTCCATAGTGGGTAGGAACATC 59.675 52.174 0.00 0.00 38.32 3.06
53 54 3.311402 ACCTCCATAGTGGGTAGGAACAT 60.311 47.826 9.90 0.00 38.32 2.71
54 55 2.045326 ACCTCCATAGTGGGTAGGAACA 59.955 50.000 9.90 0.00 38.32 3.18
55 56 2.760581 ACCTCCATAGTGGGTAGGAAC 58.239 52.381 9.90 0.00 38.32 3.62
56 57 4.194678 CTACCTCCATAGTGGGTAGGAA 57.805 50.000 9.90 0.00 45.09 3.36
57 58 3.897657 CTACCTCCATAGTGGGTAGGA 57.102 52.381 9.90 0.00 45.09 2.94
60 61 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
61 62 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
62 63 6.075984 ACTATGTTACTACCTCCATAGTGGG 58.924 44.000 9.63 0.00 44.96 4.61
63 64 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
64 65 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
66 67 8.604184 TCCTAGACTATGTTACTACCTCCATAG 58.396 40.741 0.00 0.00 41.50 2.23
67 68 8.515927 TCCTAGACTATGTTACTACCTCCATA 57.484 38.462 0.00 0.00 0.00 2.74
68 69 7.403837 TCCTAGACTATGTTACTACCTCCAT 57.596 40.000 0.00 0.00 0.00 3.41
69 70 6.836714 TCCTAGACTATGTTACTACCTCCA 57.163 41.667 0.00 0.00 0.00 3.86
70 71 7.779326 ACTTTCCTAGACTATGTTACTACCTCC 59.221 40.741 0.00 0.00 0.00 4.30
71 72 8.623030 CACTTTCCTAGACTATGTTACTACCTC 58.377 40.741 0.00 0.00 0.00 3.85
72 73 8.114743 ACACTTTCCTAGACTATGTTACTACCT 58.885 37.037 0.00 0.00 0.00 3.08
73 74 8.189460 CACACTTTCCTAGACTATGTTACTACC 58.811 40.741 0.00 0.00 0.00 3.18
74 75 8.954350 TCACACTTTCCTAGACTATGTTACTAC 58.046 37.037 0.00 0.00 0.00 2.73
75 76 9.524496 TTCACACTTTCCTAGACTATGTTACTA 57.476 33.333 0.00 0.00 0.00 1.82
76 77 8.418597 TTCACACTTTCCTAGACTATGTTACT 57.581 34.615 0.00 0.00 0.00 2.24
77 78 8.305317 ACTTCACACTTTCCTAGACTATGTTAC 58.695 37.037 0.00 0.00 0.00 2.50
78 79 8.418597 ACTTCACACTTTCCTAGACTATGTTA 57.581 34.615 0.00 0.00 0.00 2.41
79 80 7.304497 ACTTCACACTTTCCTAGACTATGTT 57.696 36.000 0.00 0.00 0.00 2.71
80 81 6.919775 ACTTCACACTTTCCTAGACTATGT 57.080 37.500 0.00 0.00 0.00 2.29
81 82 8.524487 AGTAACTTCACACTTTCCTAGACTATG 58.476 37.037 0.00 0.00 0.00 2.23
82 83 8.653036 AGTAACTTCACACTTTCCTAGACTAT 57.347 34.615 0.00 0.00 0.00 2.12
83 84 9.228949 CTAGTAACTTCACACTTTCCTAGACTA 57.771 37.037 0.00 0.00 0.00 2.59
84 85 6.980416 AGTAACTTCACACTTTCCTAGACT 57.020 37.500 0.00 0.00 0.00 3.24
85 86 6.807720 GCTAGTAACTTCACACTTTCCTAGAC 59.192 42.308 0.00 0.00 0.00 2.59
86 87 6.720288 AGCTAGTAACTTCACACTTTCCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
87 88 6.926313 AGCTAGTAACTTCACACTTTCCTAG 58.074 40.000 0.00 0.00 0.00 3.02
88 89 6.912951 AGCTAGTAACTTCACACTTTCCTA 57.087 37.500 0.00 0.00 0.00 2.94
89 90 5.810080 AGCTAGTAACTTCACACTTTCCT 57.190 39.130 0.00 0.00 0.00 3.36
90 91 7.603024 ACATAAGCTAGTAACTTCACACTTTCC 59.397 37.037 0.00 0.00 0.00 3.13
91 92 8.535690 ACATAAGCTAGTAACTTCACACTTTC 57.464 34.615 0.00 0.00 0.00 2.62
92 93 8.904099 AACATAAGCTAGTAACTTCACACTTT 57.096 30.769 0.00 0.00 0.00 2.66
93 94 8.368668 AGAACATAAGCTAGTAACTTCACACTT 58.631 33.333 0.00 0.00 0.00 3.16
94 95 7.897864 AGAACATAAGCTAGTAACTTCACACT 58.102 34.615 0.00 0.00 0.00 3.55
95 96 8.436200 CAAGAACATAAGCTAGTAACTTCACAC 58.564 37.037 0.00 0.00 0.00 3.82
96 97 7.117812 GCAAGAACATAAGCTAGTAACTTCACA 59.882 37.037 0.00 0.00 0.00 3.58
97 98 7.413109 GGCAAGAACATAAGCTAGTAACTTCAC 60.413 40.741 0.00 0.00 0.00 3.18
98 99 6.594159 GGCAAGAACATAAGCTAGTAACTTCA 59.406 38.462 0.00 0.00 0.00 3.02
99 100 6.037281 GGGCAAGAACATAAGCTAGTAACTTC 59.963 42.308 0.00 0.00 0.00 3.01
100 101 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
101 102 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
102 103 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
103 104 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
104 105 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
105 106 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
106 107 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
107 108 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
108 109 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
109 110 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
110 111 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
111 112 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
112 113 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
113 114 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
114 115 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
115 116 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
116 117 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
117 118 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
118 119 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
119 120 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
120 121 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
121 122 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
122 123 1.004745 AGTTAGGCTGGTCACAATGGG 59.995 52.381 0.00 0.00 0.00 4.00
123 124 2.496899 AGTTAGGCTGGTCACAATGG 57.503 50.000 0.00 0.00 0.00 3.16
124 125 4.813161 CAGATAGTTAGGCTGGTCACAATG 59.187 45.833 0.00 0.00 0.00 2.82
125 126 4.471386 ACAGATAGTTAGGCTGGTCACAAT 59.529 41.667 0.00 0.00 34.05 2.71
126 127 3.838317 ACAGATAGTTAGGCTGGTCACAA 59.162 43.478 0.00 0.00 34.05 3.33
127 128 3.441101 ACAGATAGTTAGGCTGGTCACA 58.559 45.455 0.00 0.00 34.05 3.58
128 129 3.702045 AGACAGATAGTTAGGCTGGTCAC 59.298 47.826 0.00 0.00 34.05 3.67
129 130 3.982516 AGACAGATAGTTAGGCTGGTCA 58.017 45.455 0.00 0.00 34.05 4.02
130 131 4.647399 AGAAGACAGATAGTTAGGCTGGTC 59.353 45.833 0.00 0.00 34.05 4.02
131 132 4.615513 AGAAGACAGATAGTTAGGCTGGT 58.384 43.478 0.00 0.00 34.05 4.00
132 133 4.646945 TGAGAAGACAGATAGTTAGGCTGG 59.353 45.833 0.00 0.00 34.05 4.85
133 134 5.843673 TGAGAAGACAGATAGTTAGGCTG 57.156 43.478 0.00 0.00 35.81 4.85
134 135 6.132658 TGATGAGAAGACAGATAGTTAGGCT 58.867 40.000 0.00 0.00 0.00 4.58
135 136 6.398234 TGATGAGAAGACAGATAGTTAGGC 57.602 41.667 0.00 0.00 0.00 3.93
136 137 8.006298 AGTTGATGAGAAGACAGATAGTTAGG 57.994 38.462 0.00 0.00 0.00 2.69
137 138 8.681806 TGAGTTGATGAGAAGACAGATAGTTAG 58.318 37.037 0.00 0.00 0.00 2.34
138 139 8.581253 TGAGTTGATGAGAAGACAGATAGTTA 57.419 34.615 0.00 0.00 0.00 2.24
139 140 7.473735 TGAGTTGATGAGAAGACAGATAGTT 57.526 36.000 0.00 0.00 0.00 2.24
140 141 7.658525 ATGAGTTGATGAGAAGACAGATAGT 57.341 36.000 0.00 0.00 0.00 2.12
141 142 7.042590 GCAATGAGTTGATGAGAAGACAGATAG 60.043 40.741 0.00 0.00 37.53 2.08
142 143 6.760298 GCAATGAGTTGATGAGAAGACAGATA 59.240 38.462 0.00 0.00 37.53 1.98
143 144 5.585445 GCAATGAGTTGATGAGAAGACAGAT 59.415 40.000 0.00 0.00 37.53 2.90
144 145 4.934001 GCAATGAGTTGATGAGAAGACAGA 59.066 41.667 0.00 0.00 37.53 3.41
145 146 4.094590 GGCAATGAGTTGATGAGAAGACAG 59.905 45.833 0.00 0.00 37.53 3.51
146 147 4.005650 GGCAATGAGTTGATGAGAAGACA 58.994 43.478 0.00 0.00 37.53 3.41
147 148 4.005650 TGGCAATGAGTTGATGAGAAGAC 58.994 43.478 0.00 0.00 37.53 3.01
148 149 4.005650 GTGGCAATGAGTTGATGAGAAGA 58.994 43.478 0.00 0.00 37.53 2.87
149 150 3.754850 TGTGGCAATGAGTTGATGAGAAG 59.245 43.478 0.00 0.00 37.53 2.85
150 151 3.753815 TGTGGCAATGAGTTGATGAGAA 58.246 40.909 0.00 0.00 37.53 2.87
151 152 3.421919 TGTGGCAATGAGTTGATGAGA 57.578 42.857 0.00 0.00 37.53 3.27
152 153 5.732528 GCTTATGTGGCAATGAGTTGATGAG 60.733 44.000 0.00 0.00 37.53 2.90
153 154 4.096833 GCTTATGTGGCAATGAGTTGATGA 59.903 41.667 0.00 0.00 37.53 2.92
154 155 4.142337 TGCTTATGTGGCAATGAGTTGATG 60.142 41.667 0.00 0.00 37.53 3.07
155 156 4.018490 TGCTTATGTGGCAATGAGTTGAT 58.982 39.130 0.00 0.00 37.53 2.57
156 157 3.419943 TGCTTATGTGGCAATGAGTTGA 58.580 40.909 0.00 0.00 37.53 3.18
157 158 3.853831 TGCTTATGTGGCAATGAGTTG 57.146 42.857 0.00 0.00 36.71 3.16
175 176 3.311966 GAGTCCAACTCAGCAAAATTGC 58.688 45.455 10.08 10.08 44.45 3.56
176 177 3.250762 TCGAGTCCAACTCAGCAAAATTG 59.749 43.478 7.78 0.00 45.30 2.32
177 178 3.476552 TCGAGTCCAACTCAGCAAAATT 58.523 40.909 7.78 0.00 45.30 1.82
178 179 3.126001 TCGAGTCCAACTCAGCAAAAT 57.874 42.857 7.78 0.00 45.30 1.82
179 180 2.613026 TCGAGTCCAACTCAGCAAAA 57.387 45.000 7.78 0.00 45.30 2.44
180 181 2.224281 ACATCGAGTCCAACTCAGCAAA 60.224 45.455 7.78 0.00 45.30 3.68
181 182 1.344438 ACATCGAGTCCAACTCAGCAA 59.656 47.619 7.78 0.00 45.30 3.91
182 183 0.969149 ACATCGAGTCCAACTCAGCA 59.031 50.000 7.78 0.00 45.30 4.41
183 184 2.086054 AACATCGAGTCCAACTCAGC 57.914 50.000 7.78 0.00 45.30 4.26
184 185 4.082733 TCAGTAACATCGAGTCCAACTCAG 60.083 45.833 7.78 1.37 45.30 3.35
185 186 3.824443 TCAGTAACATCGAGTCCAACTCA 59.176 43.478 7.78 0.00 45.30 3.41
186 187 4.436242 TCAGTAACATCGAGTCCAACTC 57.564 45.455 0.00 0.00 41.71 3.01
187 188 4.462834 TCATCAGTAACATCGAGTCCAACT 59.537 41.667 0.00 0.00 0.00 3.16
188 189 4.744570 TCATCAGTAACATCGAGTCCAAC 58.255 43.478 0.00 0.00 0.00 3.77
189 190 5.047306 ACTTCATCAGTAACATCGAGTCCAA 60.047 40.000 0.00 0.00 31.97 3.53
190 191 4.462834 ACTTCATCAGTAACATCGAGTCCA 59.537 41.667 0.00 0.00 31.97 4.02
191 192 5.000012 ACTTCATCAGTAACATCGAGTCC 58.000 43.478 0.00 0.00 31.97 3.85
192 193 7.251994 AGTAACTTCATCAGTAACATCGAGTC 58.748 38.462 0.00 0.00 32.94 3.36
193 194 7.159322 AGTAACTTCATCAGTAACATCGAGT 57.841 36.000 0.00 0.00 32.94 4.18
194 195 7.221067 GGAAGTAACTTCATCAGTAACATCGAG 59.779 40.741 0.00 0.00 41.77 4.04
195 196 7.033791 GGAAGTAACTTCATCAGTAACATCGA 58.966 38.462 0.00 0.00 41.77 3.59
196 197 6.811665 TGGAAGTAACTTCATCAGTAACATCG 59.188 38.462 0.00 0.00 41.77 3.84
197 198 7.819900 AGTGGAAGTAACTTCATCAGTAACATC 59.180 37.037 0.00 0.00 41.77 3.06
198 199 7.604164 CAGTGGAAGTAACTTCATCAGTAACAT 59.396 37.037 0.00 0.00 41.77 2.71
199 200 6.929049 CAGTGGAAGTAACTTCATCAGTAACA 59.071 38.462 0.00 0.00 41.77 2.41
200 201 6.929606 ACAGTGGAAGTAACTTCATCAGTAAC 59.070 38.462 0.00 0.00 41.77 2.50
201 202 6.929049 CACAGTGGAAGTAACTTCATCAGTAA 59.071 38.462 0.00 0.00 41.77 2.24
202 203 6.455647 CACAGTGGAAGTAACTTCATCAGTA 58.544 40.000 0.00 0.00 41.77 2.74
203 204 5.300752 CACAGTGGAAGTAACTTCATCAGT 58.699 41.667 0.00 0.00 41.77 3.41
204 205 4.692625 CCACAGTGGAAGTAACTTCATCAG 59.307 45.833 15.35 0.00 40.96 2.90
205 206 4.641396 CCACAGTGGAAGTAACTTCATCA 58.359 43.478 15.35 0.00 40.96 3.07
206 207 3.437049 GCCACAGTGGAAGTAACTTCATC 59.563 47.826 24.96 0.00 40.96 2.92
207 208 3.073062 AGCCACAGTGGAAGTAACTTCAT 59.927 43.478 24.96 0.00 40.96 2.57
208 209 2.438021 AGCCACAGTGGAAGTAACTTCA 59.562 45.455 24.96 0.00 40.96 3.02
209 210 3.127425 AGCCACAGTGGAAGTAACTTC 57.873 47.619 24.96 1.67 40.96 3.01
210 211 3.646637 ACTAGCCACAGTGGAAGTAACTT 59.353 43.478 24.96 0.59 40.96 2.66
211 212 3.240302 ACTAGCCACAGTGGAAGTAACT 58.760 45.455 24.96 11.78 40.96 2.24
212 213 3.258622 AGACTAGCCACAGTGGAAGTAAC 59.741 47.826 24.96 13.39 40.96 2.50
213 214 3.507411 AGACTAGCCACAGTGGAAGTAA 58.493 45.455 24.96 1.86 40.96 2.24
214 215 3.170991 AGACTAGCCACAGTGGAAGTA 57.829 47.619 24.96 9.87 40.96 2.24
215 216 2.016905 AGACTAGCCACAGTGGAAGT 57.983 50.000 24.96 23.25 40.96 3.01
216 217 3.118956 CCTAAGACTAGCCACAGTGGAAG 60.119 52.174 24.96 20.28 40.96 3.46
217 218 2.832129 CCTAAGACTAGCCACAGTGGAA 59.168 50.000 24.96 9.31 40.96 3.53
218 219 2.457598 CCTAAGACTAGCCACAGTGGA 58.542 52.381 24.96 1.80 40.96 4.02
219 220 1.134670 GCCTAAGACTAGCCACAGTGG 60.135 57.143 16.16 16.16 41.55 4.00
220 221 1.827969 AGCCTAAGACTAGCCACAGTG 59.172 52.381 0.00 0.00 0.00 3.66
221 222 1.827969 CAGCCTAAGACTAGCCACAGT 59.172 52.381 0.00 0.00 0.00 3.55
222 223 1.827969 ACAGCCTAAGACTAGCCACAG 59.172 52.381 0.00 0.00 0.00 3.66
223 224 1.825474 GACAGCCTAAGACTAGCCACA 59.175 52.381 0.00 0.00 0.00 4.17
224 225 1.137282 GGACAGCCTAAGACTAGCCAC 59.863 57.143 0.00 0.00 0.00 5.01
225 226 1.486211 GGACAGCCTAAGACTAGCCA 58.514 55.000 0.00 0.00 0.00 4.75
226 227 0.753867 GGGACAGCCTAAGACTAGCC 59.246 60.000 0.00 0.00 0.00 3.93
227 228 0.386113 CGGGACAGCCTAAGACTAGC 59.614 60.000 0.00 0.00 0.00 3.42
228 229 2.054232 TCGGGACAGCCTAAGACTAG 57.946 55.000 0.00 0.00 0.00 2.57
229 230 2.519771 TTCGGGACAGCCTAAGACTA 57.480 50.000 0.00 0.00 0.00 2.59
230 231 1.550976 CTTTCGGGACAGCCTAAGACT 59.449 52.381 0.00 0.00 0.00 3.24
231 232 1.549170 TCTTTCGGGACAGCCTAAGAC 59.451 52.381 0.00 0.00 0.00 3.01
232 233 1.933021 TCTTTCGGGACAGCCTAAGA 58.067 50.000 0.00 0.00 0.00 2.10
233 234 2.762535 TTCTTTCGGGACAGCCTAAG 57.237 50.000 0.00 0.00 0.00 2.18
234 235 3.495434 TTTTCTTTCGGGACAGCCTAA 57.505 42.857 0.00 0.00 0.00 2.69
235 236 3.713826 ATTTTCTTTCGGGACAGCCTA 57.286 42.857 0.00 0.00 0.00 3.93
242 243 2.109304 AGGGTCCAATTTTCTTTCGGGA 59.891 45.455 0.00 0.00 0.00 5.14
253 254 3.040965 CTGTGCACAGGGTCCAATT 57.959 52.632 34.65 0.00 40.20 2.32
264 265 1.194495 GCGTACGTATACCTGTGCAC 58.806 55.000 17.90 10.75 0.00 4.57
275 285 3.486708 CCCGTATTGTTGTAGCGTACGTA 60.487 47.826 17.90 5.34 37.14 3.57
287 297 1.733389 CGCACGTACTCCCGTATTGTT 60.733 52.381 0.00 0.00 39.45 2.83
303 313 1.003839 TCCCACTTGTCATCCGCAC 60.004 57.895 0.00 0.00 0.00 5.34
304 314 1.003839 GTCCCACTTGTCATCCGCA 60.004 57.895 0.00 0.00 0.00 5.69
335 345 4.269523 ACACACGTGCCATGCCCT 62.270 61.111 17.22 0.00 0.00 5.19
347 357 2.408704 CGTGCTTTAGCTCTACACACAC 59.591 50.000 3.10 0.00 42.66 3.82
348 358 2.609491 CCGTGCTTTAGCTCTACACACA 60.609 50.000 3.10 0.00 42.66 3.72
349 359 1.993370 CCGTGCTTTAGCTCTACACAC 59.007 52.381 3.10 0.00 42.66 3.82
350 360 1.616865 ACCGTGCTTTAGCTCTACACA 59.383 47.619 3.10 0.00 42.66 3.72
389 399 3.059982 CAGGTGGCGTCTCTCCAA 58.940 61.111 0.00 0.00 35.01 3.53
415 425 1.933115 ATTTGGGATTGGCACGTCGC 61.933 55.000 8.61 8.61 41.28 5.19
421 466 0.969917 CCGGTGATTTGGGATTGGCA 60.970 55.000 0.00 0.00 0.00 4.92
422 467 0.682855 TCCGGTGATTTGGGATTGGC 60.683 55.000 0.00 0.00 0.00 4.52
572 622 2.147387 GTGGTGGTGGAGTGAGGGT 61.147 63.158 0.00 0.00 0.00 4.34
657 716 2.982744 CTGCTCGTCGGTCAGCTCA 61.983 63.158 6.06 0.00 36.53 4.26
731 797 1.738099 GAGTGGAATCGCGTGTGCT 60.738 57.895 5.77 0.00 39.65 4.40
774 840 0.319555 TCGCTCAACCGGAACAAGAG 60.320 55.000 9.46 8.68 0.00 2.85
779 845 3.119096 GCCTCGCTCAACCGGAAC 61.119 66.667 9.46 0.00 0.00 3.62
818 884 4.760047 GCGGGGAGCGAGCAAGAA 62.760 66.667 0.00 0.00 35.41 2.52
934 1002 1.743252 GCTTTCACCTCGGAGGCAG 60.743 63.158 23.84 16.32 39.63 4.85
935 1003 2.050836 TTGCTTTCACCTCGGAGGCA 62.051 55.000 23.84 11.74 39.63 4.75
990 1067 1.604378 GGTGGCCATGTCTGCTAGT 59.396 57.895 9.72 0.00 0.00 2.57
1160 1237 2.787567 GGCAGGTAGAGGAGACGGC 61.788 68.421 0.00 0.00 0.00 5.68
1189 1279 0.992072 ATGCGTTCGTCAGTTGATCG 59.008 50.000 0.00 0.00 0.00 3.69
1193 1283 1.006825 TCCGATGCGTTCGTCAGTTG 61.007 55.000 7.91 0.00 46.65 3.16
1194 1284 0.108804 ATCCGATGCGTTCGTCAGTT 60.109 50.000 7.91 0.00 46.65 3.16
1210 1300 4.214332 GGATAAAAACAGAGCATCCGATCC 59.786 45.833 0.00 0.00 33.66 3.36
1214 1304 4.731773 GCAAGGATAAAAACAGAGCATCCG 60.732 45.833 0.00 0.00 40.13 4.18
1230 1320 0.957395 CTCTGCAACCACGCAAGGAT 60.957 55.000 0.00 0.00 42.45 3.24
1232 1322 2.620112 CCTCTGCAACCACGCAAGG 61.620 63.158 0.00 0.00 42.45 3.61
1233 1323 2.620112 CCCTCTGCAACCACGCAAG 61.620 63.158 0.00 0.00 42.45 4.01
1234 1324 2.594303 CCCTCTGCAACCACGCAA 60.594 61.111 0.00 0.00 42.45 4.85
1265 1355 4.918201 GCCTCGAAGATGGCCGGG 62.918 72.222 2.18 0.00 42.30 5.73
1311 1401 1.617947 GGGTGCTTCTCCTCGTCCAT 61.618 60.000 0.00 0.00 0.00 3.41
1469 1559 1.000396 GCCCTGCACCTTCTTCCAT 60.000 57.895 0.00 0.00 0.00 3.41
1556 1646 1.385528 TGCGGAAGATGTAGTAGCGA 58.614 50.000 0.00 0.00 0.00 4.93
1600 1690 3.872728 CGATCGAGGGACGTGCGA 61.873 66.667 10.26 1.33 43.13 5.10
1602 1692 2.278013 GACGATCGAGGGACGTGC 60.278 66.667 24.34 0.00 43.13 5.34
1603 1693 1.226323 GTGACGATCGAGGGACGTG 60.226 63.158 24.34 0.00 43.13 4.49
1604 1694 1.673337 TGTGACGATCGAGGGACGT 60.673 57.895 24.34 8.87 43.13 4.34
1606 1696 1.139095 GGTGTGACGATCGAGGGAC 59.861 63.158 24.34 12.24 0.00 4.46
1607 1697 2.404186 CGGTGTGACGATCGAGGGA 61.404 63.158 24.34 0.00 35.47 4.20
1608 1698 2.102357 CGGTGTGACGATCGAGGG 59.898 66.667 24.34 0.00 35.47 4.30
1610 1700 2.579787 GCCGGTGTGACGATCGAG 60.580 66.667 24.34 3.67 35.47 4.04
1618 1708 4.710695 CACGTAGCGCCGGTGTGA 62.711 66.667 17.91 1.38 32.39 3.58
1645 1739 0.447801 GGAACATCGTGTGTGGATGC 59.552 55.000 1.93 0.00 43.98 3.91
1654 1748 1.063027 TCTACTACGCGGAACATCGTG 59.937 52.381 12.47 0.00 44.99 4.35
1656 1750 1.329906 AGTCTACTACGCGGAACATCG 59.670 52.381 12.47 0.00 0.00 3.84
1657 1751 3.106672 CAAGTCTACTACGCGGAACATC 58.893 50.000 12.47 0.00 0.00 3.06
1660 1754 1.470098 TCCAAGTCTACTACGCGGAAC 59.530 52.381 12.47 0.00 32.32 3.62
1664 1758 0.806868 TGGTCCAAGTCTACTACGCG 59.193 55.000 3.53 3.53 0.00 6.01
1665 1759 1.467035 CGTGGTCCAAGTCTACTACGC 60.467 57.143 0.00 0.00 42.27 4.42
1667 1761 4.715527 ATTCGTGGTCCAAGTCTACTAC 57.284 45.455 4.63 0.00 0.00 2.73
1668 1762 5.337009 GGAAATTCGTGGTCCAAGTCTACTA 60.337 44.000 4.63 0.00 0.00 1.82
1670 1764 3.683340 GGAAATTCGTGGTCCAAGTCTAC 59.317 47.826 4.63 0.00 0.00 2.59
1671 1765 3.581332 AGGAAATTCGTGGTCCAAGTCTA 59.419 43.478 4.63 0.00 33.57 2.59
1672 1766 2.372172 AGGAAATTCGTGGTCCAAGTCT 59.628 45.455 4.63 0.00 33.57 3.24
1673 1767 2.779506 AGGAAATTCGTGGTCCAAGTC 58.220 47.619 4.63 0.00 33.57 3.01
1674 1768 2.951229 AGGAAATTCGTGGTCCAAGT 57.049 45.000 4.63 0.00 33.57 3.16
1675 1769 4.760204 ACTAAAGGAAATTCGTGGTCCAAG 59.240 41.667 0.00 0.00 33.57 3.61
1676 1770 4.721132 ACTAAAGGAAATTCGTGGTCCAA 58.279 39.130 0.00 0.00 33.57 3.53
1677 1771 4.360951 ACTAAAGGAAATTCGTGGTCCA 57.639 40.909 0.00 0.00 33.57 4.02
1678 1772 5.458015 CAAACTAAAGGAAATTCGTGGTCC 58.542 41.667 0.00 0.00 0.00 4.46
1692 1786 5.629435 GGTCCAAAATTCTCGCAAACTAAAG 59.371 40.000 0.00 0.00 0.00 1.85
1694 1788 4.580995 TGGTCCAAAATTCTCGCAAACTAA 59.419 37.500 0.00 0.00 0.00 2.24
1695 1789 4.023536 GTGGTCCAAAATTCTCGCAAACTA 60.024 41.667 0.00 0.00 0.00 2.24
1696 1790 2.955660 TGGTCCAAAATTCTCGCAAACT 59.044 40.909 0.00 0.00 0.00 2.66
1697 1791 3.049912 GTGGTCCAAAATTCTCGCAAAC 58.950 45.455 0.00 0.00 0.00 2.93
1698 1792 2.287308 CGTGGTCCAAAATTCTCGCAAA 60.287 45.455 0.00 0.00 0.00 3.68
1699 1793 1.265635 CGTGGTCCAAAATTCTCGCAA 59.734 47.619 0.00 0.00 0.00 4.85
1707 1801 2.536761 TCGAGTTCGTGGTCCAAAAT 57.463 45.000 0.00 0.00 40.80 1.82
1712 1806 1.810030 GCCATCGAGTTCGTGGTCC 60.810 63.158 17.83 0.00 40.27 4.46
1714 1808 2.107041 TTGGCCATCGAGTTCGTGGT 62.107 55.000 6.09 0.23 40.27 4.16
1722 1816 3.733077 GCTGAAGAAAATTGGCCATCGAG 60.733 47.826 6.09 1.49 0.00 4.04
1736 1830 5.106876 TGGAGAATCATGATGCTGAAGAA 57.893 39.130 21.56 0.00 36.25 2.52
1777 1871 2.993899 GGTGACACGGACATAAAGACAG 59.006 50.000 0.00 0.00 0.00 3.51
1867 1965 1.572085 CCAAGGCAGACAAGAGTGCG 61.572 60.000 0.00 0.00 40.82 5.34
1936 2037 2.054232 AGCCATCAATCAGCTTGAGG 57.946 50.000 0.00 0.00 46.71 3.86
1953 2054 7.145932 TCTTTATCTGGAACTTTTGCTAAGC 57.854 36.000 0.00 0.00 0.00 3.09
2046 2156 2.700897 AGCTGTTACTTCACTGTCCAGT 59.299 45.455 0.00 0.00 43.61 4.00
2049 2159 1.801178 GCAGCTGTTACTTCACTGTCC 59.199 52.381 16.64 0.00 0.00 4.02
2062 2172 1.202452 GCCAAAAGAACAAGCAGCTGT 60.202 47.619 16.64 0.00 0.00 4.40
2063 2173 1.202440 TGCCAAAAGAACAAGCAGCTG 60.202 47.619 10.11 10.11 0.00 4.24
2091 2201 6.319911 CAGAGTCAGAAGATGTGTCCTATACA 59.680 42.308 0.00 0.00 35.06 2.29
2092 2202 6.734137 CAGAGTCAGAAGATGTGTCCTATAC 58.266 44.000 0.00 0.00 0.00 1.47
2093 2203 5.300539 GCAGAGTCAGAAGATGTGTCCTATA 59.699 44.000 0.00 0.00 0.00 1.31
2094 2204 4.099266 GCAGAGTCAGAAGATGTGTCCTAT 59.901 45.833 0.00 0.00 0.00 2.57
2231 2347 0.529119 ACTCGACGCGGTTGAAGTTT 60.529 50.000 12.47 0.00 0.00 2.66
2429 2566 2.598632 GGCGGCCATTTCGATCTCG 61.599 63.158 15.62 0.00 41.45 4.04
2433 2570 2.895372 GTCGGCGGCCATTTCGAT 60.895 61.111 20.71 0.00 34.13 3.59
2481 2618 0.939577 TTCGATCGGCTAATCTGCGC 60.940 55.000 16.41 0.00 0.00 6.09
2496 2640 1.867812 CGCGAGCTGAACGATTCGA 60.868 57.895 13.95 0.00 35.19 3.71
2629 2791 0.526524 GTGCACTACGGCTGAGCTAG 60.527 60.000 10.32 1.40 34.04 3.42
2630 2792 0.965866 AGTGCACTACGGCTGAGCTA 60.966 55.000 20.16 0.00 34.04 3.32
2631 2793 2.219325 GAGTGCACTACGGCTGAGCT 62.219 60.000 21.73 0.00 34.04 4.09
2648 2810 9.583765 GTTACATTTACCTGACTAACCTAAGAG 57.416 37.037 0.00 0.00 0.00 2.85
2696 2859 9.736023 CAAATCTATTTACAAGCCAGGATTAAC 57.264 33.333 0.00 0.00 0.00 2.01
2698 2861 9.474313 AACAAATCTATTTACAAGCCAGGATTA 57.526 29.630 0.00 0.00 0.00 1.75
2719 2887 4.555348 ACGACGCCTGAAAATAAACAAA 57.445 36.364 0.00 0.00 0.00 2.83
2720 2888 4.376210 CGTACGACGCCTGAAAATAAACAA 60.376 41.667 10.44 0.00 33.65 2.83
2722 2890 3.364621 TCGTACGACGCCTGAAAATAAAC 59.635 43.478 15.28 0.00 42.21 2.01
2723 2891 3.573598 TCGTACGACGCCTGAAAATAAA 58.426 40.909 15.28 0.00 42.21 1.40
2724 2892 3.214697 TCGTACGACGCCTGAAAATAA 57.785 42.857 15.28 0.00 42.21 1.40
2725 2893 2.917701 TCGTACGACGCCTGAAAATA 57.082 45.000 15.28 0.00 42.21 1.40
2726 2894 2.288961 ATCGTACGACGCCTGAAAAT 57.711 45.000 22.14 0.00 42.21 1.82
2728 2896 2.178474 GTATCGTACGACGCCTGAAA 57.822 50.000 22.14 0.00 42.21 2.69
2744 2918 5.418840 ACCCAAATGATTTCTTTGCTCGTAT 59.581 36.000 0.00 0.00 33.27 3.06
2745 2919 4.764823 ACCCAAATGATTTCTTTGCTCGTA 59.235 37.500 0.00 0.00 33.27 3.43
2746 2920 3.573967 ACCCAAATGATTTCTTTGCTCGT 59.426 39.130 0.00 0.00 33.27 4.18
2754 2928 8.303876 GTTGTATTGTACACCCAAATGATTTCT 58.696 33.333 0.00 0.00 38.63 2.52
2756 2930 8.189119 AGTTGTATTGTACACCCAAATGATTT 57.811 30.769 0.00 0.00 38.63 2.17
2768 2942 8.002984 TCCATCGATCTTAGTTGTATTGTACA 57.997 34.615 0.00 0.00 36.79 2.90
2776 2950 6.041409 ACATGATCTCCATCGATCTTAGTTGT 59.959 38.462 0.00 0.00 40.32 3.32
2777 2951 6.453943 ACATGATCTCCATCGATCTTAGTTG 58.546 40.000 0.00 0.00 40.32 3.16
2792 2966 5.740513 GCTCCTACTACCCAAACATGATCTC 60.741 48.000 0.00 0.00 0.00 2.75
2793 2967 4.101741 GCTCCTACTACCCAAACATGATCT 59.898 45.833 0.00 0.00 0.00 2.75
2795 2969 3.780294 TGCTCCTACTACCCAAACATGAT 59.220 43.478 0.00 0.00 0.00 2.45
2797 2971 3.627395 TGCTCCTACTACCCAAACATG 57.373 47.619 0.00 0.00 0.00 3.21
2798 2972 4.862641 AATGCTCCTACTACCCAAACAT 57.137 40.909 0.00 0.00 0.00 2.71
2801 2975 4.288626 AGTGAAATGCTCCTACTACCCAAA 59.711 41.667 0.00 0.00 0.00 3.28
2802 2976 3.844211 AGTGAAATGCTCCTACTACCCAA 59.156 43.478 0.00 0.00 0.00 4.12
2803 2977 3.197766 CAGTGAAATGCTCCTACTACCCA 59.802 47.826 0.00 0.00 0.00 4.51
2805 2979 3.197983 ACCAGTGAAATGCTCCTACTACC 59.802 47.826 0.00 0.00 0.00 3.18
2806 2980 4.473477 ACCAGTGAAATGCTCCTACTAC 57.527 45.455 0.00 0.00 0.00 2.73
2807 2981 4.530553 TGAACCAGTGAAATGCTCCTACTA 59.469 41.667 0.00 0.00 0.00 1.82
2815 3001 3.715628 ACAAGTGAACCAGTGAAATGC 57.284 42.857 0.00 0.00 0.00 3.56
2826 3012 2.473609 TGCGAACATCGTACAAGTGAAC 59.526 45.455 1.45 0.00 42.81 3.18
2859 3045 1.064240 ACAAACCCGGTCCAGTTCTTT 60.064 47.619 0.00 0.00 0.00 2.52
2862 3048 0.464916 ACACAAACCCGGTCCAGTTC 60.465 55.000 0.00 0.00 0.00 3.01
2864 3050 0.107268 GTACACAAACCCGGTCCAGT 59.893 55.000 0.00 0.00 0.00 4.00
2865 3051 0.947180 CGTACACAAACCCGGTCCAG 60.947 60.000 0.00 0.00 0.00 3.86
2866 3052 1.069427 CGTACACAAACCCGGTCCA 59.931 57.895 0.00 0.00 0.00 4.02
2867 3053 0.316841 TACGTACACAAACCCGGTCC 59.683 55.000 0.00 0.00 0.00 4.46
2868 3054 1.000274 ACTACGTACACAAACCCGGTC 60.000 52.381 0.00 0.00 0.00 4.79
2869 3055 1.039856 ACTACGTACACAAACCCGGT 58.960 50.000 0.00 0.00 0.00 5.28
2901 3087 5.983118 CCAGCGTGTAATCAGTATATTCACA 59.017 40.000 0.00 0.00 0.00 3.58
2906 3092 3.926616 GCCCAGCGTGTAATCAGTATAT 58.073 45.455 0.00 0.00 0.00 0.86
2922 3108 2.805353 CACGAACGAGACGCCCAG 60.805 66.667 0.14 0.00 0.00 4.45
2976 3166 1.222115 GCCAAACTCGCAACGACTCT 61.222 55.000 0.00 0.00 0.00 3.24
3003 3193 5.336150 TCAGTTCCAGAGCAGAGAAATAG 57.664 43.478 0.00 0.00 0.00 1.73
3070 3282 0.249398 CCGACCCAGTTTACCCAGAG 59.751 60.000 0.00 0.00 0.00 3.35
3100 3313 1.371881 GGTCGAATCGATCCCTCGC 60.372 63.158 9.10 8.01 44.65 5.03
3105 3318 1.301009 GGCCAGGTCGAATCGATCC 60.301 63.158 12.76 13.30 37.77 3.36
3191 3404 7.306341 GCAAACTAATTGAACCGAAACGAAATT 60.306 33.333 0.00 0.00 41.85 1.82
3198 3411 4.035324 TGACGCAAACTAATTGAACCGAAA 59.965 37.500 0.00 0.00 41.85 3.46
3201 3414 3.529634 TGACGCAAACTAATTGAACCG 57.470 42.857 0.00 0.00 41.85 4.44
3203 3416 3.608073 GCCATGACGCAAACTAATTGAAC 59.392 43.478 0.00 0.00 41.85 3.18
3206 3419 3.173599 CAGCCATGACGCAAACTAATTG 58.826 45.455 0.00 0.00 42.21 2.32
3207 3420 2.164219 CCAGCCATGACGCAAACTAATT 59.836 45.455 0.00 0.00 0.00 1.40
3208 3421 1.745087 CCAGCCATGACGCAAACTAAT 59.255 47.619 0.00 0.00 0.00 1.73
3209 3422 1.164411 CCAGCCATGACGCAAACTAA 58.836 50.000 0.00 0.00 0.00 2.24
3255 3475 3.543680 AGGCTTGTACGCATGAACTAT 57.456 42.857 0.00 0.00 0.00 2.12
3268 3488 1.215423 AGAAGGGTGTCAAAGGCTTGT 59.785 47.619 0.00 0.00 33.94 3.16
3282 3502 3.259902 GTTGTTAGCGGTAGAAGAAGGG 58.740 50.000 0.00 0.00 0.00 3.95
3300 3520 1.736645 CAGTGGAGCCGTACGGTTG 60.737 63.158 33.34 18.17 37.65 3.77
3346 3567 1.728069 GCCTATCACTGAGACGCGA 59.272 57.895 15.93 0.00 0.00 5.87
3353 3575 4.769688 ACAAATGATTCGCCTATCACTGA 58.230 39.130 10.94 0.00 37.36 3.41
3360 3582 2.675844 CGTCCAACAAATGATTCGCCTA 59.324 45.455 0.00 0.00 0.00 3.93
3361 3583 1.468520 CGTCCAACAAATGATTCGCCT 59.531 47.619 0.00 0.00 0.00 5.52
3429 5181 1.816224 TCACATCCATCGAACGACTCA 59.184 47.619 0.00 0.00 0.00 3.41
3441 5193 1.621672 TACAGCGGGCATCACATCCA 61.622 55.000 0.00 0.00 0.00 3.41
3443 5195 1.490693 CGTACAGCGGGCATCACATC 61.491 60.000 0.00 0.00 36.85 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.