Multiple sequence alignment - TraesCS5B01G319900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G319900 chr5B 100.000 4280 0 0 1 4280 505274308 505278587 0.000000e+00 7904.0
1 TraesCS5B01G319900 chr5B 92.869 1767 101 12 1714 3473 505379002 505380750 0.000000e+00 2542.0
2 TraesCS5B01G319900 chr5B 86.978 1413 160 17 1908 3308 487438399 487439799 0.000000e+00 1568.0
3 TraesCS5B01G319900 chr5B 93.647 787 38 9 1 784 457108362 457107585 0.000000e+00 1166.0
4 TraesCS5B01G319900 chr5B 91.201 841 50 14 785 1612 505378122 505378951 0.000000e+00 1122.0
5 TraesCS5B01G319900 chr5B 87.659 786 87 8 1 785 626656635 626657411 0.000000e+00 905.0
6 TraesCS5B01G319900 chr5B 88.400 500 46 8 1074 1570 487437763 487438253 3.690000e-165 592.0
7 TraesCS5B01G319900 chr5B 94.631 298 12 2 3987 4280 598230401 598230698 3.900000e-125 459.0
8 TraesCS5B01G319900 chr5B 94.295 298 13 2 3987 4280 106548153 106548450 1.810000e-123 453.0
9 TraesCS5B01G319900 chr5B 95.167 269 6 2 3477 3741 505381414 505381679 6.620000e-113 418.0
10 TraesCS5B01G319900 chr5B 92.742 124 9 0 1850 1973 505276097 505276220 3.400000e-41 180.0
11 TraesCS5B01G319900 chr5B 92.742 124 9 0 1790 1913 505276157 505276280 3.400000e-41 180.0
12 TraesCS5B01G319900 chr5B 94.643 112 4 2 3739 3849 505383201 505383311 5.690000e-39 172.0
13 TraesCS5B01G319900 chr5B 96.970 66 1 1 1618 1682 505275862 505275927 4.520000e-20 110.0
14 TraesCS5B01G319900 chr5D 93.277 2142 96 14 1682 3814 417827761 417829863 0.000000e+00 3114.0
15 TraesCS5B01G319900 chr5D 87.190 1413 156 18 1908 3308 406416187 406417586 0.000000e+00 1583.0
16 TraesCS5B01G319900 chr5D 90.629 843 47 15 809 1633 417826914 417827742 0.000000e+00 1090.0
17 TraesCS5B01G319900 chr5D 85.358 642 60 24 999 1617 406415458 406416088 6.040000e-178 634.0
18 TraesCS5B01G319900 chr5D 93.056 72 4 1 3913 3984 417832572 417832642 2.110000e-18 104.0
19 TraesCS5B01G319900 chr5D 93.939 66 3 1 1618 1682 417827664 417827729 9.790000e-17 99.0
20 TraesCS5B01G319900 chr5A 94.159 1575 67 4 1791 3362 532740494 532742046 0.000000e+00 2375.0
21 TraesCS5B01G319900 chr5A 86.784 1415 161 19 1908 3308 512060291 512061693 0.000000e+00 1554.0
22 TraesCS5B01G319900 chr5A 90.471 871 48 18 785 1633 531238398 531239255 0.000000e+00 1116.0
23 TraesCS5B01G319900 chr5A 87.020 547 57 10 1075 1617 512059656 512060192 4.730000e-169 604.0
24 TraesCS5B01G319900 chr5A 90.385 260 24 1 1682 1941 328953087 328952829 1.470000e-89 340.0
25 TraesCS5B01G319900 chr5A 88.350 103 12 0 1790 1892 328952919 328952817 1.620000e-24 124.0
26 TraesCS5B01G319900 chr5A 90.625 64 6 0 1910 1973 328952979 328952916 7.630000e-13 86.1
27 TraesCS5B01G319900 chr1D 86.883 1357 151 17 1951 3283 440719195 440720548 0.000000e+00 1495.0
28 TraesCS5B01G319900 chr1A 86.508 1386 154 21 1928 3283 537347081 537345699 0.000000e+00 1493.0
29 TraesCS5B01G319900 chr6D 86.165 1395 152 23 1949 3308 36253445 36254833 0.000000e+00 1469.0
30 TraesCS5B01G319900 chr6D 87.384 539 54 9 1084 1618 36252790 36253318 1.320000e-169 606.0
31 TraesCS5B01G319900 chr1B 85.795 1415 157 27 1928 3308 598191397 598192801 0.000000e+00 1459.0
32 TraesCS5B01G319900 chr1B 90.712 786 55 10 1 784 676948096 676948865 0.000000e+00 1031.0
33 TraesCS5B01G319900 chr6B 85.735 1395 158 22 1949 3308 75942319 75943707 0.000000e+00 1435.0
34 TraesCS5B01G319900 chr6B 86.296 540 58 11 1084 1618 75941664 75942192 1.330000e-159 573.0
35 TraesCS5B01G319900 chr6B 94.595 296 12 2 3989 4280 686470502 686470207 5.050000e-124 455.0
36 TraesCS5B01G319900 chr6B 94.276 297 13 2 3988 4280 91952477 91952181 6.530000e-123 451.0
37 TraesCS5B01G319900 chr6A 85.077 1367 167 19 1949 3283 40298749 40300110 0.000000e+00 1360.0
38 TraesCS5B01G319900 chr6A 86.642 539 57 10 1084 1618 40298095 40298622 2.220000e-162 582.0
39 TraesCS5B01G319900 chr7B 95.802 786 16 3 1 785 63385958 63386727 0.000000e+00 1253.0
40 TraesCS5B01G319900 chr7B 83.170 612 78 20 1020 1617 685361108 685360508 1.750000e-148 536.0
41 TraesCS5B01G319900 chr7B 94.966 298 10 3 3987 4280 604759604 604759900 3.010000e-126 462.0
42 TraesCS5B01G319900 chr7B 94.667 300 12 2 3985 4280 611735293 611735592 3.010000e-126 462.0
43 TraesCS5B01G319900 chr2D 86.675 788 92 10 1 784 68618102 68618880 0.000000e+00 861.0
44 TraesCS5B01G319900 chr2D 86.565 789 91 12 1 784 68580932 68581710 0.000000e+00 856.0
45 TraesCS5B01G319900 chr2D 86.421 788 92 10 1 784 68558804 68559580 0.000000e+00 848.0
46 TraesCS5B01G319900 chr7D 85.171 789 98 15 1 784 515031850 515031076 0.000000e+00 791.0
47 TraesCS5B01G319900 chr4B 88.413 630 58 11 161 784 21193799 21194419 0.000000e+00 745.0
48 TraesCS5B01G319900 chr2B 87.091 581 65 8 207 785 54242295 54241723 0.000000e+00 649.0
49 TraesCS5B01G319900 chr2B 94.295 298 13 2 3987 4280 762306230 762305933 1.810000e-123 453.0
50 TraesCS5B01G319900 chr3B 94.737 304 12 2 3981 4280 739877648 739877951 1.800000e-128 470.0
51 TraesCS5B01G319900 chr3B 94.631 298 10 4 3988 4280 807582676 807582972 1.400000e-124 457.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G319900 chr5B 505274308 505278587 4279 False 2093.50 7904 95.61350 1 4280 4 chr5B.!!$F5 4279
1 TraesCS5B01G319900 chr5B 457107585 457108362 777 True 1166.00 1166 93.64700 1 784 1 chr5B.!!$R1 783
2 TraesCS5B01G319900 chr5B 487437763 487439799 2036 False 1080.00 1568 87.68900 1074 3308 2 chr5B.!!$F4 2234
3 TraesCS5B01G319900 chr5B 505378122 505383311 5189 False 1063.50 2542 93.47000 785 3849 4 chr5B.!!$F6 3064
4 TraesCS5B01G319900 chr5B 626656635 626657411 776 False 905.00 905 87.65900 1 785 1 chr5B.!!$F3 784
5 TraesCS5B01G319900 chr5D 406415458 406417586 2128 False 1108.50 1583 86.27400 999 3308 2 chr5D.!!$F1 2309
6 TraesCS5B01G319900 chr5D 417826914 417832642 5728 False 1101.75 3114 92.72525 809 3984 4 chr5D.!!$F2 3175
7 TraesCS5B01G319900 chr5A 532740494 532742046 1552 False 2375.00 2375 94.15900 1791 3362 1 chr5A.!!$F2 1571
8 TraesCS5B01G319900 chr5A 531238398 531239255 857 False 1116.00 1116 90.47100 785 1633 1 chr5A.!!$F1 848
9 TraesCS5B01G319900 chr5A 512059656 512061693 2037 False 1079.00 1554 86.90200 1075 3308 2 chr5A.!!$F3 2233
10 TraesCS5B01G319900 chr1D 440719195 440720548 1353 False 1495.00 1495 86.88300 1951 3283 1 chr1D.!!$F1 1332
11 TraesCS5B01G319900 chr1A 537345699 537347081 1382 True 1493.00 1493 86.50800 1928 3283 1 chr1A.!!$R1 1355
12 TraesCS5B01G319900 chr6D 36252790 36254833 2043 False 1037.50 1469 86.77450 1084 3308 2 chr6D.!!$F1 2224
13 TraesCS5B01G319900 chr1B 598191397 598192801 1404 False 1459.00 1459 85.79500 1928 3308 1 chr1B.!!$F1 1380
14 TraesCS5B01G319900 chr1B 676948096 676948865 769 False 1031.00 1031 90.71200 1 784 1 chr1B.!!$F2 783
15 TraesCS5B01G319900 chr6B 75941664 75943707 2043 False 1004.00 1435 86.01550 1084 3308 2 chr6B.!!$F1 2224
16 TraesCS5B01G319900 chr6A 40298095 40300110 2015 False 971.00 1360 85.85950 1084 3283 2 chr6A.!!$F1 2199
17 TraesCS5B01G319900 chr7B 63385958 63386727 769 False 1253.00 1253 95.80200 1 785 1 chr7B.!!$F1 784
18 TraesCS5B01G319900 chr7B 685360508 685361108 600 True 536.00 536 83.17000 1020 1617 1 chr7B.!!$R1 597
19 TraesCS5B01G319900 chr2D 68618102 68618880 778 False 861.00 861 86.67500 1 784 1 chr2D.!!$F3 783
20 TraesCS5B01G319900 chr2D 68580932 68581710 778 False 856.00 856 86.56500 1 784 1 chr2D.!!$F2 783
21 TraesCS5B01G319900 chr2D 68558804 68559580 776 False 848.00 848 86.42100 1 784 1 chr2D.!!$F1 783
22 TraesCS5B01G319900 chr7D 515031076 515031850 774 True 791.00 791 85.17100 1 784 1 chr7D.!!$R1 783
23 TraesCS5B01G319900 chr4B 21193799 21194419 620 False 745.00 745 88.41300 161 784 1 chr4B.!!$F1 623
24 TraesCS5B01G319900 chr2B 54241723 54242295 572 True 649.00 649 87.09100 207 785 1 chr2B.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 550 0.320508 GAAGTGGTGGAGGGACGAAC 60.321 60.000 0.00 0.00 0.00 3.95 F
649 661 0.393808 ACGTGGTCAAACAGCCTGTT 60.394 50.000 3.74 3.74 43.41 3.16 F
940 953 0.460109 CCACCAGATCAATCGCGACA 60.460 55.000 12.93 0.00 0.00 4.35 F
1199 1245 1.088306 CTCACGGAGAACTACTCGCT 58.912 55.000 0.00 0.00 45.76 4.93 F
1637 1694 1.142965 GGAGAAGGAGAAGGCGCTC 59.857 63.158 7.64 0.00 0.00 5.03 F
1638 1695 1.226831 GAGAAGGAGAAGGCGCTCG 60.227 63.158 7.64 0.00 35.74 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 1736 0.455295 CTCAGAGTCCAGTTCGTCGC 60.455 60.000 0.00 0.0 0.00 5.19 R
2003 2177 1.134670 GGACCTTCTTGGACATCTCCG 60.135 57.143 0.00 0.0 39.88 4.63 R
2166 2343 1.666234 GGCGAGCCCGATCTTCATC 60.666 63.158 1.97 0.0 38.22 2.92 R
2700 2877 2.124570 ATGCACACCTCCATCGGC 60.125 61.111 0.00 0.0 0.00 5.54 R
3114 3327 2.126228 GACGTCACCGGCATCGAA 60.126 61.111 11.55 0.0 43.43 3.71 R
3350 3589 2.420466 GAACAACGTTCCGTGACCGC 62.420 60.000 0.00 0.0 39.99 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 119 6.703607 AGAATCGACATAAATCTCCACATCAC 59.296 38.462 0.00 0.00 0.00 3.06
427 437 2.020720 ACACAACCACGCAAGAAATCA 58.979 42.857 0.00 0.00 43.62 2.57
539 550 0.320508 GAAGTGGTGGAGGGACGAAC 60.321 60.000 0.00 0.00 0.00 3.95
649 661 0.393808 ACGTGGTCAAACAGCCTGTT 60.394 50.000 3.74 3.74 43.41 3.16
785 798 4.407621 TGACCGTGGGTGTATTTATCTCAT 59.592 41.667 0.00 0.00 35.25 2.90
786 799 5.104693 TGACCGTGGGTGTATTTATCTCATT 60.105 40.000 0.00 0.00 35.25 2.57
787 800 5.123227 ACCGTGGGTGTATTTATCTCATTG 58.877 41.667 0.00 0.00 32.98 2.82
788 801 4.024048 CCGTGGGTGTATTTATCTCATTGC 60.024 45.833 0.00 0.00 0.00 3.56
789 802 4.816385 CGTGGGTGTATTTATCTCATTGCT 59.184 41.667 0.00 0.00 0.00 3.91
790 803 5.989168 CGTGGGTGTATTTATCTCATTGCTA 59.011 40.000 0.00 0.00 0.00 3.49
791 804 6.481976 CGTGGGTGTATTTATCTCATTGCTAA 59.518 38.462 0.00 0.00 0.00 3.09
792 805 7.011950 CGTGGGTGTATTTATCTCATTGCTAAA 59.988 37.037 0.00 0.00 0.00 1.85
793 806 8.345565 GTGGGTGTATTTATCTCATTGCTAAAG 58.654 37.037 0.00 0.00 0.00 1.85
794 807 7.013274 TGGGTGTATTTATCTCATTGCTAAAGC 59.987 37.037 0.00 0.00 42.50 3.51
940 953 0.460109 CCACCAGATCAATCGCGACA 60.460 55.000 12.93 0.00 0.00 4.35
1125 1165 3.257561 CTCGACGCGGCCATCAAG 61.258 66.667 12.47 0.00 0.00 3.02
1193 1239 2.707849 GGGCGCTCACGGAGAACTA 61.708 63.158 7.64 0.00 40.57 2.24
1199 1245 1.088306 CTCACGGAGAACTACTCGCT 58.912 55.000 0.00 0.00 45.76 4.93
1200 1246 1.469308 CTCACGGAGAACTACTCGCTT 59.531 52.381 0.00 0.00 45.76 4.68
1201 1247 1.199327 TCACGGAGAACTACTCGCTTG 59.801 52.381 0.00 0.00 45.76 4.01
1633 1690 2.188207 GGCGGAGAAGGAGAAGGC 59.812 66.667 0.00 0.00 0.00 4.35
1636 1693 2.716017 CGGAGAAGGAGAAGGCGCT 61.716 63.158 7.64 0.00 0.00 5.92
1637 1694 1.142965 GGAGAAGGAGAAGGCGCTC 59.857 63.158 7.64 0.00 0.00 5.03
1638 1695 1.226831 GAGAAGGAGAAGGCGCTCG 60.227 63.158 7.64 0.00 35.74 5.03
1639 1696 2.202810 GAAGGAGAAGGCGCTCGG 60.203 66.667 7.64 0.00 35.74 4.63
1640 1697 4.459089 AAGGAGAAGGCGCTCGGC 62.459 66.667 7.64 7.80 42.51 5.54
1671 1728 4.722700 CCCTCCGCACCAGGTTGG 62.723 72.222 1.50 1.50 45.02 3.77
1707 1764 2.125753 GACTCTGAGCCACTGCCG 60.126 66.667 4.19 0.00 38.69 5.69
1780 1837 2.923634 ATCCATGCAGAGCAAGGCCC 62.924 60.000 8.29 0.00 45.60 5.80
1862 1919 2.764128 GATGGAGGCCGTCCCTGA 60.764 66.667 15.98 1.63 46.60 3.86
1922 1982 2.764128 GATGGAGGCCGTCCCTGA 60.764 66.667 15.98 1.63 46.60 3.86
1923 1983 3.083997 ATGGAGGCCGTCCCTGAC 61.084 66.667 15.98 0.00 46.60 3.51
2003 2177 1.551019 AAGACCTCCCCACGTAAGCC 61.551 60.000 0.00 0.00 45.62 4.35
2005 2179 4.157120 CCTCCCCACGTAAGCCGG 62.157 72.222 0.00 0.00 42.24 6.13
2149 2323 2.046938 TCGGACCTCGAACAGCTTT 58.953 52.632 0.00 0.00 45.86 3.51
3114 3327 3.575351 GAACCTGCGCGACTCCAGT 62.575 63.158 12.10 0.00 0.00 4.00
3198 3411 3.779183 TCCTCAAGATCTTCCTGCAGAAT 59.221 43.478 17.39 2.77 32.82 2.40
3294 3531 3.040990 GACTAGATCGACTGTCGTGTG 57.959 52.381 27.16 16.51 41.35 3.82
3383 3622 1.886542 GTTGTTCCCTTGGTCCATGAC 59.113 52.381 6.33 0.00 0.00 3.06
3525 4437 7.147320 TGACCCATCTTGTGATGTAATCCTTAT 60.147 37.037 5.48 0.00 46.38 1.73
3543 4455 7.699709 TCCTTATCCATTACCCTTTGACATA 57.300 36.000 0.00 0.00 0.00 2.29
3544 4456 7.745717 TCCTTATCCATTACCCTTTGACATAG 58.254 38.462 0.00 0.00 0.00 2.23
3545 4457 7.349859 TCCTTATCCATTACCCTTTGACATAGT 59.650 37.037 0.00 0.00 0.00 2.12
3586 4498 1.239296 GCCTAACACGGAACCCCAAC 61.239 60.000 0.00 0.00 0.00 3.77
3733 4645 7.336427 ACAACAAATCATTCCAACAAAACACAT 59.664 29.630 0.00 0.00 0.00 3.21
3781 6217 3.476552 AGTCATTTTCAGAACTTCGGCA 58.523 40.909 0.00 0.00 0.00 5.69
3827 6263 2.357009 TCGACAGCCGTCTTATTACTCC 59.643 50.000 0.00 0.00 40.23 3.85
3834 6270 4.343239 AGCCGTCTTATTACTCCGGTATTT 59.657 41.667 0.00 0.00 40.70 1.40
3858 6294 2.029964 GGTGCGAGACCCGTTTGA 59.970 61.111 0.00 0.00 39.10 2.69
3859 6295 1.375523 GGTGCGAGACCCGTTTGAT 60.376 57.895 0.00 0.00 39.10 2.57
3860 6296 0.953960 GGTGCGAGACCCGTTTGATT 60.954 55.000 0.00 0.00 39.10 2.57
3861 6297 1.673626 GGTGCGAGACCCGTTTGATTA 60.674 52.381 0.00 0.00 39.10 1.75
3862 6298 1.659098 GTGCGAGACCCGTTTGATTAG 59.341 52.381 0.00 0.00 41.15 1.73
3863 6299 1.546923 TGCGAGACCCGTTTGATTAGA 59.453 47.619 0.00 0.00 41.15 2.10
3864 6300 1.925185 GCGAGACCCGTTTGATTAGAC 59.075 52.381 0.00 0.00 41.15 2.59
3865 6301 2.416972 GCGAGACCCGTTTGATTAGACT 60.417 50.000 0.00 0.00 41.15 3.24
3866 6302 3.846360 CGAGACCCGTTTGATTAGACTT 58.154 45.455 0.00 0.00 0.00 3.01
3867 6303 3.858238 CGAGACCCGTTTGATTAGACTTC 59.142 47.826 0.00 0.00 0.00 3.01
3868 6304 3.846360 AGACCCGTTTGATTAGACTTCG 58.154 45.455 0.00 0.00 0.00 3.79
3869 6305 3.257624 AGACCCGTTTGATTAGACTTCGT 59.742 43.478 0.00 0.00 0.00 3.85
3870 6306 3.992427 GACCCGTTTGATTAGACTTCGTT 59.008 43.478 0.00 0.00 0.00 3.85
3871 6307 4.383173 ACCCGTTTGATTAGACTTCGTTT 58.617 39.130 0.00 0.00 0.00 3.60
3872 6308 5.540911 ACCCGTTTGATTAGACTTCGTTTA 58.459 37.500 0.00 0.00 0.00 2.01
3873 6309 6.168389 ACCCGTTTGATTAGACTTCGTTTAT 58.832 36.000 0.00 0.00 0.00 1.40
3874 6310 6.652062 ACCCGTTTGATTAGACTTCGTTTATT 59.348 34.615 0.00 0.00 0.00 1.40
3875 6311 6.959311 CCCGTTTGATTAGACTTCGTTTATTG 59.041 38.462 0.00 0.00 0.00 1.90
3876 6312 6.959311 CCGTTTGATTAGACTTCGTTTATTGG 59.041 38.462 0.00 0.00 0.00 3.16
3877 6313 7.360607 CCGTTTGATTAGACTTCGTTTATTGGT 60.361 37.037 0.00 0.00 0.00 3.67
3885 6321 2.721274 TCGTTTATTGGTTCGGTCGA 57.279 45.000 0.00 0.00 0.00 4.20
3891 6327 5.454520 GTTTATTGGTTCGGTCGATTTTGT 58.545 37.500 0.00 0.00 0.00 2.83
3898 6334 2.552031 TCGGTCGATTTTGTGTTGTCA 58.448 42.857 0.00 0.00 0.00 3.58
3900 6336 2.635444 GGTCGATTTTGTGTTGTCACG 58.365 47.619 0.00 0.00 46.49 4.35
3922 6358 1.968493 CTAAATAGGCCAGCTACGGGA 59.032 52.381 5.01 0.00 0.00 5.14
3923 6359 0.468648 AAATAGGCCAGCTACGGGAC 59.531 55.000 5.01 0.00 0.00 4.46
3925 6361 1.115930 ATAGGCCAGCTACGGGACTG 61.116 60.000 5.01 0.00 45.67 3.51
3926 6362 2.219449 TAGGCCAGCTACGGGACTGA 62.219 60.000 5.01 0.00 45.67 3.41
3928 6364 1.113517 GGCCAGCTACGGGACTGATA 61.114 60.000 0.00 0.00 35.90 2.15
3930 6366 0.315568 CCAGCTACGGGACTGATAGC 59.684 60.000 2.78 0.00 41.39 2.97
3931 6367 1.032794 CAGCTACGGGACTGATAGCA 58.967 55.000 5.38 0.00 43.13 3.49
3984 9090 6.671605 CCTAGACTAGGGTTTACTTACTCCT 58.328 44.000 19.53 0.00 42.42 3.69
3985 9091 7.124721 CCTAGACTAGGGTTTACTTACTCCTT 58.875 42.308 19.53 0.00 42.42 3.36
3986 9092 7.285172 CCTAGACTAGGGTTTACTTACTCCTTC 59.715 44.444 19.53 0.00 42.42 3.46
3987 9093 5.957168 AGACTAGGGTTTACTTACTCCTTCC 59.043 44.000 0.00 0.00 0.00 3.46
3988 9094 5.658474 ACTAGGGTTTACTTACTCCTTCCA 58.342 41.667 0.00 0.00 0.00 3.53
3989 9095 4.904895 AGGGTTTACTTACTCCTTCCAC 57.095 45.455 0.00 0.00 0.00 4.02
3990 9096 4.500452 AGGGTTTACTTACTCCTTCCACT 58.500 43.478 0.00 0.00 0.00 4.00
3991 9097 5.658474 AGGGTTTACTTACTCCTTCCACTA 58.342 41.667 0.00 0.00 0.00 2.74
3992 9098 5.483231 AGGGTTTACTTACTCCTTCCACTAC 59.517 44.000 0.00 0.00 0.00 2.73
3993 9099 5.246883 GGGTTTACTTACTCCTTCCACTACA 59.753 44.000 0.00 0.00 0.00 2.74
3994 9100 6.239686 GGGTTTACTTACTCCTTCCACTACAA 60.240 42.308 0.00 0.00 0.00 2.41
3995 9101 6.872547 GGTTTACTTACTCCTTCCACTACAAG 59.127 42.308 0.00 0.00 0.00 3.16
3996 9102 7.256083 GGTTTACTTACTCCTTCCACTACAAGA 60.256 40.741 0.00 0.00 0.00 3.02
3997 9103 7.844493 TTACTTACTCCTTCCACTACAAGAA 57.156 36.000 0.00 0.00 0.00 2.52
3998 9104 6.742559 ACTTACTCCTTCCACTACAAGAAA 57.257 37.500 0.00 0.00 0.00 2.52
3999 9105 7.317722 ACTTACTCCTTCCACTACAAGAAAT 57.682 36.000 0.00 0.00 0.00 2.17
4000 9106 8.431910 ACTTACTCCTTCCACTACAAGAAATA 57.568 34.615 0.00 0.00 0.00 1.40
4001 9107 9.047947 ACTTACTCCTTCCACTACAAGAAATAT 57.952 33.333 0.00 0.00 0.00 1.28
4002 9108 9.319143 CTTACTCCTTCCACTACAAGAAATATG 57.681 37.037 0.00 0.00 0.00 1.78
4003 9109 7.259088 ACTCCTTCCACTACAAGAAATATGT 57.741 36.000 0.00 0.00 34.81 2.29
4004 9110 7.331791 ACTCCTTCCACTACAAGAAATATGTC 58.668 38.462 0.00 0.00 32.27 3.06
4005 9111 7.038302 ACTCCTTCCACTACAAGAAATATGTCA 60.038 37.037 0.00 0.00 32.27 3.58
4006 9112 7.685481 TCCTTCCACTACAAGAAATATGTCAA 58.315 34.615 0.00 0.00 32.27 3.18
4007 9113 7.606456 TCCTTCCACTACAAGAAATATGTCAAC 59.394 37.037 0.00 0.00 32.27 3.18
4008 9114 7.607991 CCTTCCACTACAAGAAATATGTCAACT 59.392 37.037 0.00 0.00 32.27 3.16
4009 9115 8.918202 TTCCACTACAAGAAATATGTCAACTT 57.082 30.769 0.00 0.00 32.27 2.66
4010 9116 8.322906 TCCACTACAAGAAATATGTCAACTTG 57.677 34.615 0.00 0.00 42.11 3.16
4012 9118 8.017373 CCACTACAAGAAATATGTCAACTTGTG 58.983 37.037 17.23 11.26 46.45 3.33
4013 9119 8.773645 CACTACAAGAAATATGTCAACTTGTGA 58.226 33.333 17.23 4.99 46.45 3.58
4026 9132 5.063204 TCAACTTGTGACCTTGACTATTGG 58.937 41.667 0.00 0.00 0.00 3.16
4027 9133 4.706842 ACTTGTGACCTTGACTATTGGT 57.293 40.909 0.00 0.00 36.70 3.67
4040 9146 4.894784 GACTATTGGTCACTGAAAGGTCA 58.105 43.478 0.00 0.00 43.94 4.02
4041 9147 5.491982 GACTATTGGTCACTGAAAGGTCAT 58.508 41.667 0.00 0.00 43.94 3.06
4042 9148 5.880901 ACTATTGGTCACTGAAAGGTCATT 58.119 37.500 0.00 0.00 39.30 2.57
4043 9149 5.707298 ACTATTGGTCACTGAAAGGTCATTG 59.293 40.000 0.00 0.00 39.30 2.82
4044 9150 3.576078 TGGTCACTGAAAGGTCATTGT 57.424 42.857 0.00 0.00 39.30 2.71
4045 9151 3.897239 TGGTCACTGAAAGGTCATTGTT 58.103 40.909 0.00 0.00 39.30 2.83
4046 9152 4.277476 TGGTCACTGAAAGGTCATTGTTT 58.723 39.130 0.00 0.00 39.30 2.83
4047 9153 4.709397 TGGTCACTGAAAGGTCATTGTTTT 59.291 37.500 0.00 0.00 39.30 2.43
4048 9154 5.186797 TGGTCACTGAAAGGTCATTGTTTTT 59.813 36.000 0.00 0.00 39.30 1.94
4049 9155 5.748630 GGTCACTGAAAGGTCATTGTTTTTC 59.251 40.000 0.00 0.00 39.30 2.29
4050 9156 6.329496 GTCACTGAAAGGTCATTGTTTTTCA 58.671 36.000 10.30 10.30 39.30 2.69
4051 9157 6.980397 GTCACTGAAAGGTCATTGTTTTTCAT 59.020 34.615 10.82 3.62 38.45 2.57
4052 9158 7.168135 GTCACTGAAAGGTCATTGTTTTTCATC 59.832 37.037 10.82 0.00 38.45 2.92
4053 9159 7.068593 TCACTGAAAGGTCATTGTTTTTCATCT 59.931 33.333 10.82 2.13 38.45 2.90
4054 9160 7.168637 CACTGAAAGGTCATTGTTTTTCATCTG 59.831 37.037 10.82 7.70 38.45 2.90
4055 9161 5.984926 TGAAAGGTCATTGTTTTTCATCTGC 59.015 36.000 8.06 0.00 35.34 4.26
4056 9162 4.164822 AGGTCATTGTTTTTCATCTGCG 57.835 40.909 0.00 0.00 0.00 5.18
4057 9163 3.820467 AGGTCATTGTTTTTCATCTGCGA 59.180 39.130 0.00 0.00 0.00 5.10
4058 9164 3.914364 GGTCATTGTTTTTCATCTGCGAC 59.086 43.478 0.00 0.00 0.00 5.19
4059 9165 3.914364 GTCATTGTTTTTCATCTGCGACC 59.086 43.478 0.00 0.00 0.00 4.79
4060 9166 3.820467 TCATTGTTTTTCATCTGCGACCT 59.180 39.130 0.00 0.00 0.00 3.85
4061 9167 4.278170 TCATTGTTTTTCATCTGCGACCTT 59.722 37.500 0.00 0.00 0.00 3.50
4062 9168 4.647424 TTGTTTTTCATCTGCGACCTTT 57.353 36.364 0.00 0.00 0.00 3.11
4063 9169 4.647424 TGTTTTTCATCTGCGACCTTTT 57.353 36.364 0.00 0.00 0.00 2.27
4064 9170 5.004922 TGTTTTTCATCTGCGACCTTTTT 57.995 34.783 0.00 0.00 0.00 1.94
4090 9196 4.503910 ACCAAAAACAGAAGGTCAAAAGC 58.496 39.130 0.00 0.00 0.00 3.51
4091 9197 4.222810 ACCAAAAACAGAAGGTCAAAAGCT 59.777 37.500 0.00 0.00 33.74 3.74
4092 9198 4.567959 CCAAAAACAGAAGGTCAAAAGCTG 59.432 41.667 0.00 0.00 32.35 4.24
4093 9199 5.410067 CAAAAACAGAAGGTCAAAAGCTGA 58.590 37.500 0.00 0.00 32.35 4.26
4094 9200 4.907879 AAACAGAAGGTCAAAAGCTGAG 57.092 40.909 0.00 0.00 33.60 3.35
4095 9201 3.567478 ACAGAAGGTCAAAAGCTGAGT 57.433 42.857 0.00 0.00 33.60 3.41
4096 9202 3.209410 ACAGAAGGTCAAAAGCTGAGTG 58.791 45.455 0.00 0.00 33.60 3.51
4097 9203 3.209410 CAGAAGGTCAAAAGCTGAGTGT 58.791 45.455 0.00 0.00 33.60 3.55
4098 9204 3.249559 CAGAAGGTCAAAAGCTGAGTGTC 59.750 47.826 0.00 0.00 33.60 3.67
4099 9205 1.871080 AGGTCAAAAGCTGAGTGTCG 58.129 50.000 0.00 0.00 33.60 4.35
4100 9206 1.139058 AGGTCAAAAGCTGAGTGTCGT 59.861 47.619 0.00 0.00 33.60 4.34
4101 9207 1.940613 GGTCAAAAGCTGAGTGTCGTT 59.059 47.619 0.00 0.00 33.60 3.85
4102 9208 3.128349 GGTCAAAAGCTGAGTGTCGTTA 58.872 45.455 0.00 0.00 33.60 3.18
4103 9209 3.558418 GGTCAAAAGCTGAGTGTCGTTAA 59.442 43.478 0.00 0.00 33.60 2.01
4104 9210 4.515432 GTCAAAAGCTGAGTGTCGTTAAC 58.485 43.478 0.00 0.00 33.60 2.01
4105 9211 4.270325 GTCAAAAGCTGAGTGTCGTTAACT 59.730 41.667 3.71 0.00 33.60 2.24
4106 9212 4.270084 TCAAAAGCTGAGTGTCGTTAACTG 59.730 41.667 3.71 0.00 0.00 3.16
4107 9213 3.728076 AAGCTGAGTGTCGTTAACTGA 57.272 42.857 3.71 0.13 0.00 3.41
4108 9214 3.014604 AGCTGAGTGTCGTTAACTGAC 57.985 47.619 17.88 17.88 36.88 3.51
4109 9215 2.623889 AGCTGAGTGTCGTTAACTGACT 59.376 45.455 22.20 13.47 37.26 3.41
4110 9216 3.819337 AGCTGAGTGTCGTTAACTGACTA 59.181 43.478 22.20 11.96 37.26 2.59
4111 9217 4.459685 AGCTGAGTGTCGTTAACTGACTAT 59.540 41.667 22.20 14.75 37.26 2.12
4112 9218 5.646793 AGCTGAGTGTCGTTAACTGACTATA 59.353 40.000 22.20 7.92 37.26 1.31
4113 9219 5.966503 GCTGAGTGTCGTTAACTGACTATAG 59.033 44.000 22.20 17.21 37.26 1.31
4114 9220 5.877031 TGAGTGTCGTTAACTGACTATAGC 58.123 41.667 22.20 12.68 37.26 2.97
4115 9221 4.906423 AGTGTCGTTAACTGACTATAGCG 58.094 43.478 22.20 0.00 37.26 4.26
4116 9222 4.633126 AGTGTCGTTAACTGACTATAGCGA 59.367 41.667 22.20 0.00 37.26 4.93
4119 9225 5.746307 TCGTTAACTGACTATAGCGACAT 57.254 39.130 3.71 0.00 31.30 3.06
4120 9226 6.127810 TCGTTAACTGACTATAGCGACATT 57.872 37.500 3.71 0.00 31.30 2.71
4121 9227 6.197276 TCGTTAACTGACTATAGCGACATTC 58.803 40.000 3.71 0.00 31.30 2.67
4122 9228 6.037940 TCGTTAACTGACTATAGCGACATTCT 59.962 38.462 3.71 0.00 31.30 2.40
4123 9229 6.357503 CGTTAACTGACTATAGCGACATTCTC 59.642 42.308 3.71 0.00 0.00 2.87
4124 9230 7.419204 GTTAACTGACTATAGCGACATTCTCT 58.581 38.462 0.00 0.00 0.00 3.10
4125 9231 5.431420 ACTGACTATAGCGACATTCTCTG 57.569 43.478 0.00 0.00 0.00 3.35
4126 9232 4.884744 ACTGACTATAGCGACATTCTCTGT 59.115 41.667 0.00 0.00 42.15 3.41
4127 9233 5.175090 TGACTATAGCGACATTCTCTGTG 57.825 43.478 0.00 0.00 38.54 3.66
4128 9234 4.881850 TGACTATAGCGACATTCTCTGTGA 59.118 41.667 0.00 0.00 38.54 3.58
4129 9235 5.008118 TGACTATAGCGACATTCTCTGTGAG 59.992 44.000 0.00 0.00 38.54 3.51
4130 9236 3.724508 ATAGCGACATTCTCTGTGAGG 57.275 47.619 0.00 0.00 38.54 3.86
4131 9237 1.261480 AGCGACATTCTCTGTGAGGT 58.739 50.000 0.00 0.00 38.54 3.85
4132 9238 1.203523 AGCGACATTCTCTGTGAGGTC 59.796 52.381 0.00 0.00 38.54 3.85
4133 9239 1.901538 CGACATTCTCTGTGAGGTCG 58.098 55.000 15.99 15.99 42.89 4.79
4134 9240 1.200252 CGACATTCTCTGTGAGGTCGT 59.800 52.381 19.02 1.93 43.18 4.34
4135 9241 2.418976 CGACATTCTCTGTGAGGTCGTA 59.581 50.000 19.02 0.00 43.18 3.43
4136 9242 3.486043 CGACATTCTCTGTGAGGTCGTAG 60.486 52.174 19.02 0.00 43.18 3.51
4137 9243 3.687125 ACATTCTCTGTGAGGTCGTAGA 58.313 45.455 0.00 0.00 36.48 2.59
4158 9264 6.413018 AGACGTTTACGACCAAAATATTCC 57.587 37.500 9.53 0.00 43.02 3.01
4159 9265 6.168389 AGACGTTTACGACCAAAATATTCCT 58.832 36.000 9.53 0.00 43.02 3.36
4160 9266 7.322664 AGACGTTTACGACCAAAATATTCCTA 58.677 34.615 9.53 0.00 43.02 2.94
4161 9267 7.983484 AGACGTTTACGACCAAAATATTCCTAT 59.017 33.333 9.53 0.00 43.02 2.57
4162 9268 8.496707 ACGTTTACGACCAAAATATTCCTATT 57.503 30.769 9.53 0.00 43.02 1.73
4163 9269 9.598517 ACGTTTACGACCAAAATATTCCTATTA 57.401 29.630 9.53 0.00 43.02 0.98
4167 9273 7.448748 ACGACCAAAATATTCCTATTATGGC 57.551 36.000 0.00 0.00 0.00 4.40
4168 9274 6.148811 ACGACCAAAATATTCCTATTATGGCG 59.851 38.462 0.00 0.00 31.88 5.69
4169 9275 6.148811 CGACCAAAATATTCCTATTATGGCGT 59.851 38.462 0.00 0.00 0.00 5.68
4170 9276 7.308348 CGACCAAAATATTCCTATTATGGCGTT 60.308 37.037 0.00 0.00 0.00 4.84
4171 9277 8.245195 ACCAAAATATTCCTATTATGGCGTTT 57.755 30.769 0.00 0.00 0.00 3.60
4172 9278 8.700973 ACCAAAATATTCCTATTATGGCGTTTT 58.299 29.630 0.00 0.00 0.00 2.43
4173 9279 8.977505 CCAAAATATTCCTATTATGGCGTTTTG 58.022 33.333 0.00 0.00 34.42 2.44
4174 9280 8.977505 CAAAATATTCCTATTATGGCGTTTTGG 58.022 33.333 0.00 0.00 32.31 3.28
4175 9281 7.833285 AATATTCCTATTATGGCGTTTTGGT 57.167 32.000 0.00 0.00 0.00 3.67
4176 9282 5.767816 ATTCCTATTATGGCGTTTTGGTC 57.232 39.130 0.00 0.00 0.00 4.02
4177 9283 4.223556 TCCTATTATGGCGTTTTGGTCA 57.776 40.909 0.00 0.00 0.00 4.02
4178 9284 3.942748 TCCTATTATGGCGTTTTGGTCAC 59.057 43.478 0.00 0.00 0.00 3.67
4179 9285 3.945285 CCTATTATGGCGTTTTGGTCACT 59.055 43.478 0.00 0.00 0.00 3.41
4180 9286 5.104859 TCCTATTATGGCGTTTTGGTCACTA 60.105 40.000 0.00 0.00 0.00 2.74
4181 9287 5.236478 CCTATTATGGCGTTTTGGTCACTAG 59.764 44.000 0.00 0.00 0.00 2.57
4182 9288 1.165270 ATGGCGTTTTGGTCACTAGC 58.835 50.000 0.00 0.00 0.00 3.42
4183 9289 0.179043 TGGCGTTTTGGTCACTAGCA 60.179 50.000 0.00 0.00 0.00 3.49
4184 9290 0.948678 GGCGTTTTGGTCACTAGCAA 59.051 50.000 0.00 0.00 41.20 3.91
4185 9291 1.334689 GGCGTTTTGGTCACTAGCAAC 60.335 52.381 0.00 0.00 42.54 4.17
4186 9292 1.334689 GCGTTTTGGTCACTAGCAACC 60.335 52.381 7.10 7.10 42.54 3.77
4187 9293 2.218603 CGTTTTGGTCACTAGCAACCT 58.781 47.619 13.64 0.00 42.54 3.50
4188 9294 2.223377 CGTTTTGGTCACTAGCAACCTC 59.777 50.000 13.64 3.71 42.54 3.85
4189 9295 2.552743 GTTTTGGTCACTAGCAACCTCC 59.447 50.000 13.64 0.00 42.54 4.30
4190 9296 0.690762 TTGGTCACTAGCAACCTCCC 59.309 55.000 13.64 0.00 38.15 4.30
4191 9297 1.198759 TGGTCACTAGCAACCTCCCC 61.199 60.000 13.64 0.00 36.47 4.81
4192 9298 1.198759 GGTCACTAGCAACCTCCCCA 61.199 60.000 6.84 0.00 32.54 4.96
4193 9299 0.250513 GTCACTAGCAACCTCCCCAG 59.749 60.000 0.00 0.00 0.00 4.45
4194 9300 0.909610 TCACTAGCAACCTCCCCAGG 60.910 60.000 0.00 0.00 46.87 4.45
4195 9301 2.301738 ACTAGCAACCTCCCCAGGC 61.302 63.158 0.00 0.00 45.05 4.85
4196 9302 3.015145 TAGCAACCTCCCCAGGCC 61.015 66.667 0.00 0.00 45.05 5.19
4197 9303 3.881926 TAGCAACCTCCCCAGGCCA 62.882 63.158 5.01 0.00 45.05 5.36
4199 9305 4.722700 CAACCTCCCCAGGCCACG 62.723 72.222 5.01 0.00 45.05 4.94
4201 9307 3.857521 AACCTCCCCAGGCCACGTA 62.858 63.158 5.01 0.00 45.05 3.57
4202 9308 3.470888 CCTCCCCAGGCCACGTAG 61.471 72.222 5.01 0.00 30.98 3.51
4203 9309 3.470888 CTCCCCAGGCCACGTAGG 61.471 72.222 5.01 0.00 41.84 3.18
4220 9326 4.487412 GCATCCAGCGTGGCAAGC 62.487 66.667 17.91 17.91 37.47 4.01
4227 9333 2.699073 AGCGTGGCAAGCTGATATG 58.301 52.632 26.78 0.00 44.22 1.78
4228 9334 0.816825 AGCGTGGCAAGCTGATATGG 60.817 55.000 26.78 0.00 44.22 2.74
4229 9335 1.650912 CGTGGCAAGCTGATATGGC 59.349 57.895 2.86 2.86 42.03 4.40
4231 9337 2.797837 TGGCAAGCTGATATGGCAC 58.202 52.632 8.20 0.00 45.76 5.01
4232 9338 0.034283 TGGCAAGCTGATATGGCACA 60.034 50.000 8.20 0.00 45.76 4.57
4243 9349 4.421365 TGGCACAAGATTCAGCCC 57.579 55.556 0.00 0.00 46.45 5.19
4244 9350 1.675310 TGGCACAAGATTCAGCCCG 60.675 57.895 0.00 0.00 46.45 6.13
4245 9351 2.409870 GGCACAAGATTCAGCCCGG 61.410 63.158 0.00 0.00 41.25 5.73
4246 9352 1.675641 GCACAAGATTCAGCCCGGT 60.676 57.895 0.00 0.00 0.00 5.28
4247 9353 1.648467 GCACAAGATTCAGCCCGGTC 61.648 60.000 0.00 0.00 0.00 4.79
4248 9354 1.026718 CACAAGATTCAGCCCGGTCC 61.027 60.000 0.00 0.00 0.00 4.46
4249 9355 1.299648 CAAGATTCAGCCCGGTCCA 59.700 57.895 0.00 0.00 0.00 4.02
4250 9356 0.322456 CAAGATTCAGCCCGGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
4251 9357 0.625849 AAGATTCAGCCCGGTCCAAT 59.374 50.000 0.00 0.00 0.00 3.16
4252 9358 0.625849 AGATTCAGCCCGGTCCAATT 59.374 50.000 0.00 0.00 0.00 2.32
4253 9359 1.025041 GATTCAGCCCGGTCCAATTC 58.975 55.000 0.00 0.00 0.00 2.17
4254 9360 0.748005 ATTCAGCCCGGTCCAATTCG 60.748 55.000 0.00 0.00 0.00 3.34
4255 9361 2.813226 TTCAGCCCGGTCCAATTCGG 62.813 60.000 0.00 0.00 45.29 4.30
4256 9362 3.327404 AGCCCGGTCCAATTCGGT 61.327 61.111 0.00 0.00 44.32 4.69
4257 9363 3.131478 GCCCGGTCCAATTCGGTG 61.131 66.667 0.00 0.00 44.32 4.94
4258 9364 2.349755 CCCGGTCCAATTCGGTGT 59.650 61.111 0.00 0.00 44.32 4.16
4259 9365 1.302993 CCCGGTCCAATTCGGTGTT 60.303 57.895 0.00 0.00 44.32 3.32
4260 9366 0.891904 CCCGGTCCAATTCGGTGTTT 60.892 55.000 0.00 0.00 44.32 2.83
4261 9367 1.611148 CCCGGTCCAATTCGGTGTTTA 60.611 52.381 0.00 0.00 44.32 2.01
4262 9368 2.361789 CCGGTCCAATTCGGTGTTTAT 58.638 47.619 0.00 0.00 41.23 1.40
4263 9369 3.533547 CCGGTCCAATTCGGTGTTTATA 58.466 45.455 0.00 0.00 41.23 0.98
4264 9370 4.131596 CCGGTCCAATTCGGTGTTTATAT 58.868 43.478 0.00 0.00 41.23 0.86
4265 9371 4.024387 CCGGTCCAATTCGGTGTTTATATG 60.024 45.833 0.00 0.00 41.23 1.78
4266 9372 4.024387 CGGTCCAATTCGGTGTTTATATGG 60.024 45.833 0.00 0.00 35.57 2.74
4267 9373 4.277423 GGTCCAATTCGGTGTTTATATGGG 59.723 45.833 0.00 0.00 35.57 4.00
4268 9374 3.886505 TCCAATTCGGTGTTTATATGGGC 59.113 43.478 0.00 0.00 35.57 5.36
4269 9375 3.005367 CCAATTCGGTGTTTATATGGGCC 59.995 47.826 0.00 0.00 0.00 5.80
4270 9376 1.956297 TTCGGTGTTTATATGGGCCG 58.044 50.000 0.00 0.00 40.43 6.13
4271 9377 1.121378 TCGGTGTTTATATGGGCCGA 58.879 50.000 0.00 0.00 44.72 5.54
4272 9378 1.069513 TCGGTGTTTATATGGGCCGAG 59.930 52.381 0.00 0.00 42.53 4.63
4273 9379 1.235724 GGTGTTTATATGGGCCGAGC 58.764 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.496001 TGGAGATCAATCATGGTGGGG 59.504 52.381 0.00 0.00 0.00 4.96
405 415 0.375454 TTTCTTGCGTGGTTGTGTCG 59.625 50.000 0.00 0.00 0.00 4.35
406 416 2.032799 TGATTTCTTGCGTGGTTGTGTC 59.967 45.455 0.00 0.00 0.00 3.67
469 480 1.451936 GGGGAGTTGCATAGGCGAT 59.548 57.895 0.00 0.00 45.35 4.58
481 492 0.114560 TCGACAGAGAAAGGGGGAGT 59.885 55.000 0.00 0.00 0.00 3.85
787 800 5.547181 ACTCGGTCTTTTTATGCTTTAGC 57.453 39.130 0.00 0.00 42.50 3.09
788 801 8.252964 ACTTACTCGGTCTTTTTATGCTTTAG 57.747 34.615 0.00 0.00 0.00 1.85
789 802 7.062605 CGACTTACTCGGTCTTTTTATGCTTTA 59.937 37.037 0.00 0.00 38.87 1.85
790 803 6.128634 CGACTTACTCGGTCTTTTTATGCTTT 60.129 38.462 0.00 0.00 38.87 3.51
791 804 5.347907 CGACTTACTCGGTCTTTTTATGCTT 59.652 40.000 0.00 0.00 38.87 3.91
792 805 4.863131 CGACTTACTCGGTCTTTTTATGCT 59.137 41.667 0.00 0.00 38.87 3.79
793 806 5.127371 CGACTTACTCGGTCTTTTTATGC 57.873 43.478 0.00 0.00 38.87 3.14
822 835 2.229302 ACGTGCTAGAGGAGTTCAACTC 59.771 50.000 9.27 9.27 44.32 3.01
940 953 2.043115 GGGGAGGAGAAGATTGGGTTTT 59.957 50.000 0.00 0.00 0.00 2.43
1088 1128 3.319198 GGTCGAGGAAGGGGTGCA 61.319 66.667 0.00 0.00 0.00 4.57
1193 1239 3.851845 TTGGCGTACGCAAGCGAGT 62.852 57.895 37.99 1.77 44.11 4.18
1199 1245 2.735478 CCGAGTTGGCGTACGCAA 60.735 61.111 37.99 28.29 44.11 4.85
1200 1246 4.728102 CCCGAGTTGGCGTACGCA 62.728 66.667 37.99 22.91 44.11 5.24
1395 1441 3.380995 TGCTCGTGCATCCAGAGT 58.619 55.556 8.30 0.00 45.31 3.24
1458 1504 1.276622 GGAAGTCCTTGAGGTAGCCA 58.723 55.000 0.00 0.00 36.34 4.75
1551 1597 1.216710 CTTCTCCTTCTTCCGCGCT 59.783 57.895 5.56 0.00 0.00 5.92
1654 1711 4.722700 CCAACCTGGTGCGGAGGG 62.723 72.222 9.45 0.00 34.56 4.30
1676 1733 3.966026 GAGTCCAGTTCGTCGCCGG 62.966 68.421 0.00 0.00 33.95 6.13
1679 1736 0.455295 CTCAGAGTCCAGTTCGTCGC 60.455 60.000 0.00 0.00 0.00 5.19
1711 1768 4.932105 GGTGGGCTTGGGTGGCAA 62.932 66.667 0.00 0.00 0.00 4.52
1757 1814 2.865343 CTTGCTCTGCATGGATTTCC 57.135 50.000 0.00 0.00 38.76 3.13
1780 1837 1.218316 GGACGGCCTCAACCACTAG 59.782 63.158 0.00 0.00 0.00 2.57
1877 1934 3.574074 TTCTGCTTGGCTGCCTCCC 62.574 63.158 21.03 8.07 0.00 4.30
2003 2177 1.134670 GGACCTTCTTGGACATCTCCG 60.135 57.143 0.00 0.00 39.88 4.63
2005 2179 1.134670 CCGGACCTTCTTGGACATCTC 60.135 57.143 0.00 0.00 39.71 2.75
2056 2230 1.796796 GGTCGCCGTAGTACGTCTT 59.203 57.895 20.60 0.00 40.58 3.01
2079 2253 1.986698 CGTCGAACAGGAAACGGTAT 58.013 50.000 0.00 0.00 37.98 2.73
2106 2280 3.973267 GAGCGCGGCGAAGAAGTCT 62.973 63.158 28.54 11.56 0.00 3.24
2166 2343 1.666234 GGCGAGCCCGATCTTCATC 60.666 63.158 1.97 0.00 38.22 2.92
2167 2344 2.423446 GGCGAGCCCGATCTTCAT 59.577 61.111 1.97 0.00 38.22 2.57
2694 2871 3.329889 ACCTCCATCGGCTTGCCA 61.330 61.111 12.45 0.00 0.00 4.92
2699 2876 2.599645 GATGCACACCTCCATCGGCT 62.600 60.000 0.00 0.00 0.00 5.52
2700 2877 2.124570 ATGCACACCTCCATCGGC 60.125 61.111 0.00 0.00 0.00 5.54
3114 3327 2.126228 GACGTCACCGGCATCGAA 60.126 61.111 11.55 0.00 43.43 3.71
3198 3411 4.612412 GGGTTCACCACGCCGTCA 62.612 66.667 0.00 0.00 39.85 4.35
3294 3531 4.635324 AGAAAAGAAGCTAAGCTGATGAGC 59.365 41.667 0.00 0.00 46.64 4.26
3350 3589 2.420466 GAACAACGTTCCGTGACCGC 62.420 60.000 0.00 0.00 39.99 5.68
3383 3622 4.407296 ACTCTCATAGCTTACTTCCCTTGG 59.593 45.833 0.00 0.00 0.00 3.61
3525 4437 7.842743 AGTAGTACTATGTCAAAGGGTAATGGA 59.157 37.037 5.75 0.00 0.00 3.41
3543 4455 6.183360 GCGTGTTACTTAGCACTAGTAGTACT 60.183 42.308 8.14 8.14 35.59 2.73
3544 4456 5.962423 GCGTGTTACTTAGCACTAGTAGTAC 59.038 44.000 1.57 0.00 35.59 2.73
3545 4457 5.065218 GGCGTGTTACTTAGCACTAGTAGTA 59.935 44.000 1.57 0.00 35.59 1.82
3586 4498 6.183360 GCATGAGAAAATTGCTAAATGTGTGG 60.183 38.462 0.00 0.00 33.61 4.17
3680 4592 6.072008 TCACTTTGGATGGACAATGTTGTATG 60.072 38.462 0.00 0.00 42.43 2.39
3733 4645 9.258826 CATATGTTGATGAAGAAACAAAAACCA 57.741 29.630 0.00 0.00 39.57 3.67
3827 6263 2.826738 CACCCCCGCCAAATACCG 60.827 66.667 0.00 0.00 0.00 4.02
3849 6285 3.672767 ACGAAGTCTAATCAAACGGGT 57.327 42.857 0.00 0.00 29.74 5.28
3850 6286 6.657836 ATAAACGAAGTCTAATCAAACGGG 57.342 37.500 0.00 0.00 45.00 5.28
3851 6287 6.959311 CCAATAAACGAAGTCTAATCAAACGG 59.041 38.462 0.00 0.00 45.00 4.44
3852 6288 7.515643 ACCAATAAACGAAGTCTAATCAAACG 58.484 34.615 0.00 0.00 45.00 3.60
3853 6289 9.326339 GAACCAATAAACGAAGTCTAATCAAAC 57.674 33.333 0.00 0.00 45.00 2.93
3854 6290 8.225107 CGAACCAATAAACGAAGTCTAATCAAA 58.775 33.333 0.00 0.00 45.00 2.69
3855 6291 7.148540 CCGAACCAATAAACGAAGTCTAATCAA 60.149 37.037 0.00 0.00 45.00 2.57
3856 6292 6.311935 CCGAACCAATAAACGAAGTCTAATCA 59.688 38.462 0.00 0.00 45.00 2.57
3857 6293 6.312180 ACCGAACCAATAAACGAAGTCTAATC 59.688 38.462 0.00 0.00 45.00 1.75
3858 6294 6.168389 ACCGAACCAATAAACGAAGTCTAAT 58.832 36.000 0.00 0.00 45.00 1.73
3859 6295 5.540911 ACCGAACCAATAAACGAAGTCTAA 58.459 37.500 0.00 0.00 45.00 2.10
3860 6296 5.138125 ACCGAACCAATAAACGAAGTCTA 57.862 39.130 0.00 0.00 45.00 2.59
3861 6297 3.992427 GACCGAACCAATAAACGAAGTCT 59.008 43.478 0.00 0.00 45.00 3.24
3862 6298 3.181537 CGACCGAACCAATAAACGAAGTC 60.182 47.826 0.00 0.00 45.00 3.01
3864 6300 2.988493 TCGACCGAACCAATAAACGAAG 59.012 45.455 0.00 0.00 0.00 3.79
3865 6301 3.023946 TCGACCGAACCAATAAACGAA 57.976 42.857 0.00 0.00 0.00 3.85
3866 6302 2.721274 TCGACCGAACCAATAAACGA 57.279 45.000 0.00 0.00 0.00 3.85
3867 6303 4.330740 AAATCGACCGAACCAATAAACG 57.669 40.909 0.00 0.00 0.00 3.60
3868 6304 5.341196 CACAAAATCGACCGAACCAATAAAC 59.659 40.000 0.00 0.00 0.00 2.01
3869 6305 5.008811 ACACAAAATCGACCGAACCAATAAA 59.991 36.000 0.00 0.00 0.00 1.40
3870 6306 4.515944 ACACAAAATCGACCGAACCAATAA 59.484 37.500 0.00 0.00 0.00 1.40
3871 6307 4.066490 ACACAAAATCGACCGAACCAATA 58.934 39.130 0.00 0.00 0.00 1.90
3872 6308 2.882137 ACACAAAATCGACCGAACCAAT 59.118 40.909 0.00 0.00 0.00 3.16
3873 6309 2.290464 ACACAAAATCGACCGAACCAA 58.710 42.857 0.00 0.00 0.00 3.67
3874 6310 1.956297 ACACAAAATCGACCGAACCA 58.044 45.000 0.00 0.00 0.00 3.67
3875 6311 2.032426 ACAACACAAAATCGACCGAACC 59.968 45.455 0.00 0.00 0.00 3.62
3876 6312 3.242478 TGACAACACAAAATCGACCGAAC 60.242 43.478 0.00 0.00 0.00 3.95
3877 6313 2.937149 TGACAACACAAAATCGACCGAA 59.063 40.909 0.00 0.00 0.00 4.30
3885 6321 4.640789 TTTAGCCGTGACAACACAAAAT 57.359 36.364 0.00 0.00 46.20 1.82
3891 6327 2.352388 GCCTATTTAGCCGTGACAACA 58.648 47.619 0.00 0.00 0.00 3.33
3919 6355 0.250640 CAGGGCATGCTATCAGTCCC 60.251 60.000 18.92 7.47 37.73 4.46
3930 6366 2.520982 CCTCCATGGCAGGGCATG 60.521 66.667 24.18 24.18 0.00 4.06
3945 9051 2.772515 GTCTAGGGTAGGTGAATTGCCT 59.227 50.000 3.91 3.91 40.00 4.75
3984 9090 8.783093 CAAGTTGACATATTTCTTGTAGTGGAA 58.217 33.333 0.00 0.00 33.27 3.53
3985 9091 7.936847 ACAAGTTGACATATTTCTTGTAGTGGA 59.063 33.333 10.54 0.00 44.11 4.02
3986 9092 8.017373 CACAAGTTGACATATTTCTTGTAGTGG 58.983 37.037 10.54 0.00 44.11 4.00
3987 9093 8.773645 TCACAAGTTGACATATTTCTTGTAGTG 58.226 33.333 10.54 0.00 44.11 2.74
3988 9094 8.902540 TCACAAGTTGACATATTTCTTGTAGT 57.097 30.769 10.54 0.00 44.11 2.73
4003 9109 5.063204 CCAATAGTCAAGGTCACAAGTTGA 58.937 41.667 10.54 0.00 0.00 3.18
4004 9110 4.821805 ACCAATAGTCAAGGTCACAAGTTG 59.178 41.667 0.00 0.00 0.00 3.16
4005 9111 5.048846 ACCAATAGTCAAGGTCACAAGTT 57.951 39.130 0.00 0.00 0.00 2.66
4006 9112 4.706842 ACCAATAGTCAAGGTCACAAGT 57.293 40.909 0.00 0.00 0.00 3.16
4015 9121 8.225403 ATGACCTTTCAGTGACCAATAGTCAAG 61.225 40.741 11.57 2.94 44.87 3.02
4016 9122 6.465751 ATGACCTTTCAGTGACCAATAGTCAA 60.466 38.462 11.57 0.00 44.87 3.18
4017 9123 5.013079 ATGACCTTTCAGTGACCAATAGTCA 59.987 40.000 10.59 10.59 43.79 3.41
4018 9124 4.894784 TGACCTTTCAGTGACCAATAGTC 58.105 43.478 0.00 0.00 46.51 2.59
4019 9125 4.974645 TGACCTTTCAGTGACCAATAGT 57.025 40.909 0.00 0.00 0.00 2.12
4029 9135 7.205297 CAGATGAAAAACAATGACCTTTCAGT 58.795 34.615 12.01 3.61 40.17 3.41
4030 9136 6.145048 GCAGATGAAAAACAATGACCTTTCAG 59.855 38.462 12.01 4.12 40.17 3.02
4031 9137 5.984926 GCAGATGAAAAACAATGACCTTTCA 59.015 36.000 9.95 9.95 40.85 2.69
4032 9138 5.117592 CGCAGATGAAAAACAATGACCTTTC 59.882 40.000 0.00 0.00 0.00 2.62
4033 9139 4.984161 CGCAGATGAAAAACAATGACCTTT 59.016 37.500 0.00 0.00 0.00 3.11
4034 9140 4.278170 TCGCAGATGAAAAACAATGACCTT 59.722 37.500 0.00 0.00 0.00 3.50
4035 9141 3.820467 TCGCAGATGAAAAACAATGACCT 59.180 39.130 0.00 0.00 0.00 3.85
4036 9142 3.914364 GTCGCAGATGAAAAACAATGACC 59.086 43.478 0.00 0.00 40.67 4.02
4037 9143 3.914364 GGTCGCAGATGAAAAACAATGAC 59.086 43.478 0.00 0.00 40.67 3.06
4038 9144 3.820467 AGGTCGCAGATGAAAAACAATGA 59.180 39.130 0.00 0.00 40.67 2.57
4039 9145 4.164822 AGGTCGCAGATGAAAAACAATG 57.835 40.909 0.00 0.00 40.67 2.82
4040 9146 4.853924 AAGGTCGCAGATGAAAAACAAT 57.146 36.364 0.00 0.00 40.67 2.71
4041 9147 4.647424 AAAGGTCGCAGATGAAAAACAA 57.353 36.364 0.00 0.00 40.67 2.83
4042 9148 4.647424 AAAAGGTCGCAGATGAAAAACA 57.353 36.364 0.00 0.00 40.67 2.83
4067 9173 4.566759 GCTTTTGACCTTCTGTTTTTGGTC 59.433 41.667 0.00 0.00 46.53 4.02
4068 9174 4.222810 AGCTTTTGACCTTCTGTTTTTGGT 59.777 37.500 0.00 0.00 35.23 3.67
4069 9175 4.567959 CAGCTTTTGACCTTCTGTTTTTGG 59.432 41.667 0.00 0.00 0.00 3.28
4070 9176 5.410067 TCAGCTTTTGACCTTCTGTTTTTG 58.590 37.500 0.00 0.00 0.00 2.44
4071 9177 5.185828 ACTCAGCTTTTGACCTTCTGTTTTT 59.814 36.000 0.00 0.00 0.00 1.94
4072 9178 4.706962 ACTCAGCTTTTGACCTTCTGTTTT 59.293 37.500 0.00 0.00 0.00 2.43
4073 9179 4.096984 CACTCAGCTTTTGACCTTCTGTTT 59.903 41.667 0.00 0.00 0.00 2.83
4074 9180 3.629398 CACTCAGCTTTTGACCTTCTGTT 59.371 43.478 0.00 0.00 0.00 3.16
4075 9181 3.209410 CACTCAGCTTTTGACCTTCTGT 58.791 45.455 0.00 0.00 0.00 3.41
4076 9182 3.209410 ACACTCAGCTTTTGACCTTCTG 58.791 45.455 0.00 0.00 0.00 3.02
4077 9183 3.471680 GACACTCAGCTTTTGACCTTCT 58.528 45.455 0.00 0.00 0.00 2.85
4078 9184 2.221981 CGACACTCAGCTTTTGACCTTC 59.778 50.000 0.00 0.00 0.00 3.46
4079 9185 2.213499 CGACACTCAGCTTTTGACCTT 58.787 47.619 0.00 0.00 0.00 3.50
4080 9186 1.139058 ACGACACTCAGCTTTTGACCT 59.861 47.619 0.00 0.00 0.00 3.85
4081 9187 1.583054 ACGACACTCAGCTTTTGACC 58.417 50.000 0.00 0.00 0.00 4.02
4082 9188 4.270325 AGTTAACGACACTCAGCTTTTGAC 59.730 41.667 0.00 0.00 0.00 3.18
4083 9189 4.270084 CAGTTAACGACACTCAGCTTTTGA 59.730 41.667 0.00 0.00 0.00 2.69
4084 9190 4.270084 TCAGTTAACGACACTCAGCTTTTG 59.730 41.667 0.00 0.00 0.00 2.44
4085 9191 4.270325 GTCAGTTAACGACACTCAGCTTTT 59.730 41.667 19.06 0.00 33.43 2.27
4086 9192 3.802685 GTCAGTTAACGACACTCAGCTTT 59.197 43.478 19.06 0.00 33.43 3.51
4087 9193 3.068307 AGTCAGTTAACGACACTCAGCTT 59.932 43.478 23.14 6.29 35.77 3.74
4088 9194 2.623889 AGTCAGTTAACGACACTCAGCT 59.376 45.455 23.14 6.80 35.77 4.24
4089 9195 3.014604 AGTCAGTTAACGACACTCAGC 57.985 47.619 23.14 4.58 35.77 4.26
4090 9196 5.966503 GCTATAGTCAGTTAACGACACTCAG 59.033 44.000 23.14 16.98 35.77 3.35
4091 9197 5.446875 CGCTATAGTCAGTTAACGACACTCA 60.447 44.000 23.14 11.70 35.77 3.41
4092 9198 4.962751 CGCTATAGTCAGTTAACGACACTC 59.037 45.833 23.14 11.91 35.77 3.51
4093 9199 4.633126 TCGCTATAGTCAGTTAACGACACT 59.367 41.667 23.14 17.33 35.77 3.55
4094 9200 4.727655 GTCGCTATAGTCAGTTAACGACAC 59.272 45.833 23.14 12.51 45.73 3.67
4095 9201 4.901814 GTCGCTATAGTCAGTTAACGACA 58.098 43.478 23.14 14.22 45.73 4.35
4096 9202 4.901814 TGTCGCTATAGTCAGTTAACGAC 58.098 43.478 17.34 17.34 46.39 4.34
4097 9203 5.746307 ATGTCGCTATAGTCAGTTAACGA 57.254 39.130 0.84 0.00 0.00 3.85
4098 9204 6.200100 AGAATGTCGCTATAGTCAGTTAACG 58.800 40.000 0.84 0.00 0.00 3.18
4099 9205 7.377397 CAGAGAATGTCGCTATAGTCAGTTAAC 59.623 40.741 0.84 0.00 0.00 2.01
4100 9206 7.067129 ACAGAGAATGTCGCTATAGTCAGTTAA 59.933 37.037 0.84 0.00 37.75 2.01
4101 9207 6.542735 ACAGAGAATGTCGCTATAGTCAGTTA 59.457 38.462 0.84 0.00 37.75 2.24
4102 9208 5.358442 ACAGAGAATGTCGCTATAGTCAGTT 59.642 40.000 0.84 0.00 37.75 3.16
4103 9209 4.884744 ACAGAGAATGTCGCTATAGTCAGT 59.115 41.667 0.84 0.00 37.75 3.41
4104 9210 5.008118 TCACAGAGAATGTCGCTATAGTCAG 59.992 44.000 0.84 0.00 41.41 3.51
4105 9211 4.881850 TCACAGAGAATGTCGCTATAGTCA 59.118 41.667 0.84 0.00 41.41 3.41
4106 9212 5.425577 TCACAGAGAATGTCGCTATAGTC 57.574 43.478 0.84 0.00 41.41 2.59
4107 9213 4.277174 CCTCACAGAGAATGTCGCTATAGT 59.723 45.833 0.84 0.00 41.41 2.12
4108 9214 4.277174 ACCTCACAGAGAATGTCGCTATAG 59.723 45.833 0.00 0.00 41.41 1.31
4109 9215 4.207955 ACCTCACAGAGAATGTCGCTATA 58.792 43.478 0.00 0.00 41.41 1.31
4110 9216 3.027412 ACCTCACAGAGAATGTCGCTAT 58.973 45.455 0.00 0.00 41.41 2.97
4111 9217 2.423892 GACCTCACAGAGAATGTCGCTA 59.576 50.000 0.00 0.00 41.41 4.26
4112 9218 1.203523 GACCTCACAGAGAATGTCGCT 59.796 52.381 0.00 0.00 41.41 4.93
4113 9219 1.634702 GACCTCACAGAGAATGTCGC 58.365 55.000 0.00 0.00 41.41 5.19
4114 9220 1.901538 CGACCTCACAGAGAATGTCG 58.098 55.000 8.93 8.93 41.41 4.35
4115 9221 3.690139 TCTACGACCTCACAGAGAATGTC 59.310 47.826 0.00 0.00 41.41 3.06
4116 9222 3.440872 GTCTACGACCTCACAGAGAATGT 59.559 47.826 0.00 0.00 45.43 2.71
4117 9223 3.486043 CGTCTACGACCTCACAGAGAATG 60.486 52.174 0.00 0.00 43.02 2.67
4118 9224 2.678836 CGTCTACGACCTCACAGAGAAT 59.321 50.000 0.00 0.00 43.02 2.40
4119 9225 2.074576 CGTCTACGACCTCACAGAGAA 58.925 52.381 0.00 0.00 43.02 2.87
4120 9226 1.001746 ACGTCTACGACCTCACAGAGA 59.998 52.381 9.86 0.00 43.02 3.10
4121 9227 1.440708 ACGTCTACGACCTCACAGAG 58.559 55.000 9.86 0.00 43.02 3.35
4122 9228 1.888215 AACGTCTACGACCTCACAGA 58.112 50.000 9.86 0.00 43.02 3.41
4123 9229 2.701073 AAACGTCTACGACCTCACAG 57.299 50.000 9.86 0.00 43.02 3.66
4124 9230 2.096268 CGTAAACGTCTACGACCTCACA 60.096 50.000 16.20 0.00 46.00 3.58
4125 9231 2.157668 TCGTAAACGTCTACGACCTCAC 59.842 50.000 19.53 0.00 46.46 3.51
4126 9232 2.412870 TCGTAAACGTCTACGACCTCA 58.587 47.619 19.53 0.00 46.46 3.86
4132 9238 4.891277 ATTTTGGTCGTAAACGTCTACG 57.109 40.909 15.13 15.13 44.78 3.51
4133 9239 7.276438 AGGAATATTTTGGTCGTAAACGTCTAC 59.724 37.037 2.02 0.00 40.80 2.59
4134 9240 7.322664 AGGAATATTTTGGTCGTAAACGTCTA 58.677 34.615 2.02 0.00 40.80 2.59
4135 9241 6.168389 AGGAATATTTTGGTCGTAAACGTCT 58.832 36.000 2.02 0.00 40.80 4.18
4136 9242 6.413018 AGGAATATTTTGGTCGTAAACGTC 57.587 37.500 2.02 0.00 40.80 4.34
4137 9243 8.496707 AATAGGAATATTTTGGTCGTAAACGT 57.503 30.769 2.02 0.00 40.80 3.99
4141 9247 9.005777 GCCATAATAGGAATATTTTGGTCGTAA 57.994 33.333 14.74 0.00 39.31 3.18
4142 9248 7.332430 CGCCATAATAGGAATATTTTGGTCGTA 59.668 37.037 14.74 0.00 39.31 3.43
4143 9249 6.148811 CGCCATAATAGGAATATTTTGGTCGT 59.851 38.462 14.74 0.00 39.31 4.34
4144 9250 6.148811 ACGCCATAATAGGAATATTTTGGTCG 59.851 38.462 19.43 19.43 39.31 4.79
4145 9251 7.448748 ACGCCATAATAGGAATATTTTGGTC 57.551 36.000 14.74 9.00 39.31 4.02
4146 9252 7.833285 AACGCCATAATAGGAATATTTTGGT 57.167 32.000 14.74 0.00 39.31 3.67
4147 9253 8.977505 CAAAACGCCATAATAGGAATATTTTGG 58.022 33.333 11.08 11.08 39.76 3.28
4148 9254 8.977505 CCAAAACGCCATAATAGGAATATTTTG 58.022 33.333 0.00 0.00 34.60 2.44
4149 9255 8.700973 ACCAAAACGCCATAATAGGAATATTTT 58.299 29.630 0.00 0.00 0.00 1.82
4150 9256 8.245195 ACCAAAACGCCATAATAGGAATATTT 57.755 30.769 0.00 0.00 0.00 1.40
4151 9257 7.504238 TGACCAAAACGCCATAATAGGAATATT 59.496 33.333 0.00 0.00 0.00 1.28
4152 9258 7.001674 TGACCAAAACGCCATAATAGGAATAT 58.998 34.615 0.00 0.00 0.00 1.28
4153 9259 6.261381 GTGACCAAAACGCCATAATAGGAATA 59.739 38.462 0.00 0.00 0.00 1.75
4154 9260 5.067283 GTGACCAAAACGCCATAATAGGAAT 59.933 40.000 0.00 0.00 0.00 3.01
4155 9261 4.396790 GTGACCAAAACGCCATAATAGGAA 59.603 41.667 0.00 0.00 0.00 3.36
4156 9262 3.942748 GTGACCAAAACGCCATAATAGGA 59.057 43.478 0.00 0.00 0.00 2.94
4157 9263 3.945285 AGTGACCAAAACGCCATAATAGG 59.055 43.478 0.00 0.00 0.00 2.57
4158 9264 5.277345 GCTAGTGACCAAAACGCCATAATAG 60.277 44.000 0.00 0.00 0.00 1.73
4159 9265 4.573201 GCTAGTGACCAAAACGCCATAATA 59.427 41.667 0.00 0.00 0.00 0.98
4160 9266 3.377172 GCTAGTGACCAAAACGCCATAAT 59.623 43.478 0.00 0.00 0.00 1.28
4161 9267 2.745281 GCTAGTGACCAAAACGCCATAA 59.255 45.455 0.00 0.00 0.00 1.90
4162 9268 2.289756 TGCTAGTGACCAAAACGCCATA 60.290 45.455 0.00 0.00 0.00 2.74
4163 9269 1.165270 GCTAGTGACCAAAACGCCAT 58.835 50.000 0.00 0.00 0.00 4.40
4164 9270 0.179043 TGCTAGTGACCAAAACGCCA 60.179 50.000 0.00 0.00 0.00 5.69
4165 9271 0.948678 TTGCTAGTGACCAAAACGCC 59.051 50.000 0.00 0.00 0.00 5.68
4166 9272 1.334689 GGTTGCTAGTGACCAAAACGC 60.335 52.381 10.63 0.00 35.95 4.84
4167 9273 2.218603 AGGTTGCTAGTGACCAAAACG 58.781 47.619 15.96 0.00 38.42 3.60
4168 9274 2.552743 GGAGGTTGCTAGTGACCAAAAC 59.447 50.000 15.96 6.89 38.42 2.43
4169 9275 2.488347 GGGAGGTTGCTAGTGACCAAAA 60.488 50.000 15.96 0.00 38.42 2.44
4170 9276 1.073284 GGGAGGTTGCTAGTGACCAAA 59.927 52.381 15.96 0.00 38.42 3.28
4171 9277 0.690762 GGGAGGTTGCTAGTGACCAA 59.309 55.000 15.96 0.00 38.42 3.67
4172 9278 1.198759 GGGGAGGTTGCTAGTGACCA 61.199 60.000 15.96 0.00 38.42 4.02
4173 9279 1.198759 TGGGGAGGTTGCTAGTGACC 61.199 60.000 8.19 8.19 36.15 4.02
4174 9280 0.250513 CTGGGGAGGTTGCTAGTGAC 59.749 60.000 0.00 0.00 0.00 3.67
4175 9281 0.909610 CCTGGGGAGGTTGCTAGTGA 60.910 60.000 0.00 0.00 0.00 3.41
4176 9282 1.604378 CCTGGGGAGGTTGCTAGTG 59.396 63.158 0.00 0.00 0.00 2.74
4177 9283 2.301738 GCCTGGGGAGGTTGCTAGT 61.302 63.158 0.00 0.00 0.00 2.57
4178 9284 2.592308 GCCTGGGGAGGTTGCTAG 59.408 66.667 0.00 0.00 0.00 3.42
4179 9285 3.015145 GGCCTGGGGAGGTTGCTA 61.015 66.667 0.00 0.00 0.00 3.49
4182 9288 4.722700 CGTGGCCTGGGGAGGTTG 62.723 72.222 3.32 0.00 0.00 3.77
4183 9289 3.857521 TACGTGGCCTGGGGAGGTT 62.858 63.158 3.32 0.00 0.00 3.50
4184 9290 4.326227 TACGTGGCCTGGGGAGGT 62.326 66.667 3.32 0.00 0.00 3.85
4185 9291 3.470888 CTACGTGGCCTGGGGAGG 61.471 72.222 3.32 0.00 0.00 4.30
4186 9292 3.470888 CCTACGTGGCCTGGGGAG 61.471 72.222 3.32 0.00 0.00 4.30
4195 9301 2.586079 CGCTGGATGCCTACGTGG 60.586 66.667 0.00 0.00 38.78 4.94
4196 9302 2.167219 CACGCTGGATGCCTACGTG 61.167 63.158 14.10 14.10 42.92 4.49
4197 9303 2.184322 CACGCTGGATGCCTACGT 59.816 61.111 0.00 0.00 38.78 3.57
4198 9304 2.586079 CCACGCTGGATGCCTACG 60.586 66.667 0.00 0.00 40.96 3.51
4199 9305 2.897350 GCCACGCTGGATGCCTAC 60.897 66.667 8.04 0.00 40.96 3.18
4200 9306 2.874648 CTTGCCACGCTGGATGCCTA 62.875 60.000 8.04 0.00 40.96 3.93
4201 9307 4.349503 TTGCCACGCTGGATGCCT 62.350 61.111 8.04 0.00 40.96 4.75
4202 9308 3.818787 CTTGCCACGCTGGATGCC 61.819 66.667 8.04 0.00 40.96 4.40
4203 9309 4.487412 GCTTGCCACGCTGGATGC 62.487 66.667 8.04 0.00 40.96 3.91
4204 9310 2.749044 AGCTTGCCACGCTGGATG 60.749 61.111 0.00 0.00 40.96 3.51
4209 9315 0.816825 CCATATCAGCTTGCCACGCT 60.817 55.000 0.00 0.00 38.49 5.07
4210 9316 1.650912 CCATATCAGCTTGCCACGC 59.349 57.895 0.00 0.00 0.00 5.34
4211 9317 1.096967 TGCCATATCAGCTTGCCACG 61.097 55.000 0.00 0.00 0.00 4.94
4212 9318 0.383231 GTGCCATATCAGCTTGCCAC 59.617 55.000 0.00 0.00 0.00 5.01
4213 9319 0.034283 TGTGCCATATCAGCTTGCCA 60.034 50.000 0.00 0.00 0.00 4.92
4214 9320 1.066605 CTTGTGCCATATCAGCTTGCC 59.933 52.381 0.00 0.00 0.00 4.52
4215 9321 2.019249 TCTTGTGCCATATCAGCTTGC 58.981 47.619 0.00 0.00 0.00 4.01
4216 9322 4.337274 TGAATCTTGTGCCATATCAGCTTG 59.663 41.667 0.00 0.00 0.00 4.01
4217 9323 4.529897 TGAATCTTGTGCCATATCAGCTT 58.470 39.130 0.00 0.00 0.00 3.74
4218 9324 4.135306 CTGAATCTTGTGCCATATCAGCT 58.865 43.478 0.00 0.00 0.00 4.24
4219 9325 4.485024 CTGAATCTTGTGCCATATCAGC 57.515 45.455 0.00 0.00 0.00 4.26
4220 9326 3.252701 GGCTGAATCTTGTGCCATATCAG 59.747 47.826 0.00 0.00 44.34 2.90
4221 9327 3.216800 GGCTGAATCTTGTGCCATATCA 58.783 45.455 0.00 0.00 44.34 2.15
4222 9328 2.555757 GGGCTGAATCTTGTGCCATATC 59.444 50.000 5.21 0.00 46.53 1.63
4223 9329 2.590821 GGGCTGAATCTTGTGCCATAT 58.409 47.619 5.21 0.00 46.53 1.78
4224 9330 1.746861 CGGGCTGAATCTTGTGCCATA 60.747 52.381 5.21 0.00 46.53 2.74
4225 9331 1.033746 CGGGCTGAATCTTGTGCCAT 61.034 55.000 5.21 0.00 46.53 4.40
4226 9332 1.675310 CGGGCTGAATCTTGTGCCA 60.675 57.895 5.21 0.00 46.53 4.92
4227 9333 2.409870 CCGGGCTGAATCTTGTGCC 61.410 63.158 0.00 0.00 44.22 5.01
4228 9334 1.648467 GACCGGGCTGAATCTTGTGC 61.648 60.000 6.32 0.00 0.00 4.57
4229 9335 1.026718 GGACCGGGCTGAATCTTGTG 61.027 60.000 7.57 0.00 0.00 3.33
4230 9336 1.299976 GGACCGGGCTGAATCTTGT 59.700 57.895 7.57 0.00 0.00 3.16
4231 9337 0.322456 TTGGACCGGGCTGAATCTTG 60.322 55.000 7.57 0.00 0.00 3.02
4232 9338 0.625849 ATTGGACCGGGCTGAATCTT 59.374 50.000 7.57 0.00 0.00 2.40
4233 9339 0.625849 AATTGGACCGGGCTGAATCT 59.374 50.000 7.57 0.00 0.00 2.40
4234 9340 1.025041 GAATTGGACCGGGCTGAATC 58.975 55.000 7.57 0.00 0.00 2.52
4235 9341 0.748005 CGAATTGGACCGGGCTGAAT 60.748 55.000 7.57 2.74 0.00 2.57
4236 9342 1.376683 CGAATTGGACCGGGCTGAA 60.377 57.895 7.57 0.00 0.00 3.02
4237 9343 2.267642 CGAATTGGACCGGGCTGA 59.732 61.111 7.57 0.00 0.00 4.26
4238 9344 2.824041 CCGAATTGGACCGGGCTG 60.824 66.667 7.57 0.00 42.00 4.85
4243 9349 4.024387 CCATATAAACACCGAATTGGACCG 60.024 45.833 0.00 0.00 42.00 4.79
4244 9350 4.277423 CCCATATAAACACCGAATTGGACC 59.723 45.833 0.00 0.00 42.00 4.46
4245 9351 4.261447 GCCCATATAAACACCGAATTGGAC 60.261 45.833 0.00 0.00 42.00 4.02
4246 9352 3.886505 GCCCATATAAACACCGAATTGGA 59.113 43.478 0.00 0.00 42.00 3.53
4247 9353 3.005367 GGCCCATATAAACACCGAATTGG 59.995 47.826 0.00 0.00 46.41 3.16
4248 9354 3.304391 CGGCCCATATAAACACCGAATTG 60.304 47.826 0.00 0.00 43.19 2.32
4249 9355 2.882137 CGGCCCATATAAACACCGAATT 59.118 45.455 0.00 0.00 43.19 2.17
4250 9356 2.105134 TCGGCCCATATAAACACCGAAT 59.895 45.455 0.00 0.00 45.84 3.34
4251 9357 1.485480 TCGGCCCATATAAACACCGAA 59.515 47.619 0.00 0.00 45.84 4.30
4252 9358 1.069513 CTCGGCCCATATAAACACCGA 59.930 52.381 0.00 0.00 46.57 4.69
4253 9359 1.508632 CTCGGCCCATATAAACACCG 58.491 55.000 0.00 0.00 41.92 4.94
4254 9360 1.235724 GCTCGGCCCATATAAACACC 58.764 55.000 0.00 0.00 0.00 4.16
4255 9361 1.235724 GGCTCGGCCCATATAAACAC 58.764 55.000 0.00 0.00 44.06 3.32
4256 9362 3.717842 GGCTCGGCCCATATAAACA 57.282 52.632 0.00 0.00 44.06 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.