Multiple sequence alignment - TraesCS5B01G319200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G319200 chr5B 100.000 2533 0 0 1 2533 503323669 503321137 0.000000e+00 4678.0
1 TraesCS5B01G319200 chr5B 97.038 1958 30 4 602 2533 680776950 680774995 0.000000e+00 3269.0
2 TraesCS5B01G319200 chr5B 96.191 1969 49 3 591 2533 256586293 256588261 0.000000e+00 3197.0
3 TraesCS5B01G319200 chr5B 98.578 633 9 0 1698 2330 434634862 434635494 0.000000e+00 1120.0
4 TraesCS5B01G319200 chr5B 97.546 163 4 0 602 764 503316856 503317018 1.920000e-71 279.0
5 TraesCS5B01G319200 chr5B 97.546 163 4 0 602 764 680770353 680770515 1.920000e-71 279.0
6 TraesCS5B01G319200 chr6B 95.148 1958 56 8 602 2533 463363121 463361177 0.000000e+00 3053.0
7 TraesCS5B01G319200 chr6B 96.105 1669 55 4 875 2533 95220473 95222141 0.000000e+00 2713.0
8 TraesCS5B01G319200 chr6B 95.851 241 8 2 586 826 95220136 95220374 3.060000e-104 388.0
9 TraesCS5B01G319200 chr6B 85.211 142 21 0 2311 2452 95221985 95222126 2.030000e-31 147.0
10 TraesCS5B01G319200 chr7B 94.419 1953 71 17 599 2533 15028748 15026816 0.000000e+00 2968.0
11 TraesCS5B01G319200 chr7B 86.364 638 70 11 1049 1672 227134084 227133450 0.000000e+00 680.0
12 TraesCS5B01G319200 chr7B 97.345 226 6 0 601 826 15022540 15022765 3.950000e-103 385.0
13 TraesCS5B01G319200 chr7B 76.230 366 77 8 941 1299 322485289 322484927 4.300000e-43 185.0
14 TraesCS5B01G319200 chr7B 93.590 78 4 1 2456 2533 227133395 227133319 5.730000e-22 115.0
15 TraesCS5B01G319200 chr5A 89.572 537 22 14 1 535 529365096 529364592 0.000000e+00 651.0
16 TraesCS5B01G319200 chr5D 88.433 536 26 23 3 533 416596699 416596195 4.630000e-172 614.0
17 TraesCS5B01G319200 chr2B 97.696 217 5 0 610 826 41099245 41099029 8.560000e-100 374.0
18 TraesCS5B01G319200 chr2B 73.549 586 113 29 983 1537 181113152 181112578 4.300000e-43 185.0
19 TraesCS5B01G319200 chr2D 73.762 606 135 20 955 1543 68613859 68614457 1.530000e-52 217.0
20 TraesCS5B01G319200 chr2D 94.030 67 4 0 531 597 3218643 3218709 4.460000e-18 102.0
21 TraesCS5B01G319200 chr3D 93.056 72 4 1 527 597 294599391 294599462 1.240000e-18 104.0
22 TraesCS5B01G319200 chr3D 94.118 68 4 0 530 597 456109712 456109645 1.240000e-18 104.0
23 TraesCS5B01G319200 chr3D 93.939 66 2 2 535 600 456108211 456108274 5.770000e-17 99.0
24 TraesCS5B01G319200 chr4D 92.857 70 4 1 528 597 175784343 175784275 1.600000e-17 100.0
25 TraesCS5B01G319200 chr1B 93.846 65 4 0 533 597 641843566 641843630 5.770000e-17 99.0
26 TraesCS5B01G319200 chr7D 96.552 58 2 0 540 597 443328039 443327982 2.070000e-16 97.1
27 TraesCS5B01G319200 chr6D 93.750 64 3 1 534 597 455571020 455571082 7.460000e-16 95.3
28 TraesCS5B01G319200 chr3B 89.610 77 5 2 526 600 41977778 41977853 7.460000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G319200 chr5B 503321137 503323669 2532 True 4678.000000 4678 100.000 1 2533 1 chr5B.!!$R1 2532
1 TraesCS5B01G319200 chr5B 680774995 680776950 1955 True 3269.000000 3269 97.038 602 2533 1 chr5B.!!$R2 1931
2 TraesCS5B01G319200 chr5B 256586293 256588261 1968 False 3197.000000 3197 96.191 591 2533 1 chr5B.!!$F1 1942
3 TraesCS5B01G319200 chr5B 434634862 434635494 632 False 1120.000000 1120 98.578 1698 2330 1 chr5B.!!$F2 632
4 TraesCS5B01G319200 chr6B 463361177 463363121 1944 True 3053.000000 3053 95.148 602 2533 1 chr6B.!!$R1 1931
5 TraesCS5B01G319200 chr6B 95220136 95222141 2005 False 1082.666667 2713 92.389 586 2533 3 chr6B.!!$F1 1947
6 TraesCS5B01G319200 chr7B 15026816 15028748 1932 True 2968.000000 2968 94.419 599 2533 1 chr7B.!!$R1 1934
7 TraesCS5B01G319200 chr7B 227133319 227134084 765 True 397.500000 680 89.977 1049 2533 2 chr7B.!!$R3 1484
8 TraesCS5B01G319200 chr5A 529364592 529365096 504 True 651.000000 651 89.572 1 535 1 chr5A.!!$R1 534
9 TraesCS5B01G319200 chr5D 416596195 416596699 504 True 614.000000 614 88.433 3 533 1 chr5D.!!$R1 530
10 TraesCS5B01G319200 chr2D 68613859 68614457 598 False 217.000000 217 73.762 955 1543 1 chr2D.!!$F2 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.108089 GAAAGGCGAGAGGAGGAACC 60.108 60.0 0.00 0.00 39.35 3.62 F
397 398 0.179000 AATGGAGCCGAGGTGATCAC 59.821 55.0 17.91 17.91 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1390 0.909610 ATGCTCCCTTCGTTCCTCCA 60.910 55.000 0.00 0.0 0.00 3.86 R
2276 2527 2.490903 GGCAATTGCACAGAGAGAACAT 59.509 45.455 30.32 0.0 44.36 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 1.542547 GGAGTGGTTTGAAAGGCGAGA 60.543 52.381 0.00 0.00 0.00 4.04
128 129 1.801178 GAGTGGTTTGAAAGGCGAGAG 59.199 52.381 0.00 0.00 0.00 3.20
129 130 0.875059 GTGGTTTGAAAGGCGAGAGG 59.125 55.000 0.00 0.00 0.00 3.69
130 131 0.762418 TGGTTTGAAAGGCGAGAGGA 59.238 50.000 0.00 0.00 0.00 3.71
131 132 1.270839 TGGTTTGAAAGGCGAGAGGAG 60.271 52.381 0.00 0.00 0.00 3.69
132 133 1.443802 GTTTGAAAGGCGAGAGGAGG 58.556 55.000 0.00 0.00 0.00 4.30
133 134 1.002087 GTTTGAAAGGCGAGAGGAGGA 59.998 52.381 0.00 0.00 0.00 3.71
134 135 1.348064 TTGAAAGGCGAGAGGAGGAA 58.652 50.000 0.00 0.00 0.00 3.36
135 136 0.608640 TGAAAGGCGAGAGGAGGAAC 59.391 55.000 0.00 0.00 0.00 3.62
136 137 0.108089 GAAAGGCGAGAGGAGGAACC 60.108 60.000 0.00 0.00 39.35 3.62
137 138 1.889530 AAAGGCGAGAGGAGGAACCG 61.890 60.000 0.00 0.00 44.74 4.44
138 139 2.754658 GGCGAGAGGAGGAACCGA 60.755 66.667 0.00 0.00 44.74 4.69
139 140 2.776913 GGCGAGAGGAGGAACCGAG 61.777 68.421 0.00 0.00 44.74 4.63
140 141 2.776913 GCGAGAGGAGGAACCGAGG 61.777 68.421 0.00 0.00 44.74 4.63
141 142 2.776913 CGAGAGGAGGAACCGAGGC 61.777 68.421 0.00 0.00 44.74 4.70
142 143 2.756283 AGAGGAGGAACCGAGGCG 60.756 66.667 0.00 0.00 44.74 5.52
143 144 2.754658 GAGGAGGAACCGAGGCGA 60.755 66.667 0.00 0.00 44.74 5.54
158 159 2.197324 CGAGAGAGAGGGGGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
159 160 2.612251 GAGAGAGAGGGGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
160 161 3.039526 AGAGAGAGGGGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
174 175 2.600470 GGGGGTTGGTGTCTTGGC 60.600 66.667 0.00 0.00 0.00 4.52
175 176 2.983592 GGGGTTGGTGTCTTGGCG 60.984 66.667 0.00 0.00 0.00 5.69
176 177 2.203294 GGGTTGGTGTCTTGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
177 178 2.551912 GGGTTGGTGTCTTGGCGTG 61.552 63.158 0.00 0.00 0.00 5.34
178 179 2.551912 GGTTGGTGTCTTGGCGTGG 61.552 63.158 0.00 0.00 0.00 4.94
179 180 2.904866 TTGGTGTCTTGGCGTGGC 60.905 61.111 0.00 0.00 0.00 5.01
191 192 3.764466 CGTGGCCGGCTTCTCTCT 61.764 66.667 28.56 0.00 0.00 3.10
192 193 2.185608 GTGGCCGGCTTCTCTCTC 59.814 66.667 28.56 7.32 0.00 3.20
193 194 3.452786 TGGCCGGCTTCTCTCTCG 61.453 66.667 28.56 0.00 0.00 4.04
194 195 4.214327 GGCCGGCTTCTCTCTCGG 62.214 72.222 28.56 0.00 44.70 4.63
195 196 4.214327 GCCGGCTTCTCTCTCGGG 62.214 72.222 22.15 0.00 42.43 5.14
196 197 4.214327 CCGGCTTCTCTCTCGGGC 62.214 72.222 0.00 0.00 38.93 6.13
197 198 3.452786 CGGCTTCTCTCTCGGGCA 61.453 66.667 0.00 0.00 0.00 5.36
198 199 2.498726 GGCTTCTCTCTCGGGCAG 59.501 66.667 0.00 0.00 0.00 4.85
199 200 2.498726 GCTTCTCTCTCGGGCAGG 59.501 66.667 0.00 0.00 0.00 4.85
200 201 2.498726 CTTCTCTCTCGGGCAGGC 59.501 66.667 0.00 0.00 0.00 4.85
201 202 2.038007 TTCTCTCTCGGGCAGGCT 59.962 61.111 0.00 0.00 0.00 4.58
202 203 2.015227 CTTCTCTCTCGGGCAGGCTC 62.015 65.000 0.00 0.00 0.00 4.70
203 204 3.535962 CTCTCTCGGGCAGGCTCC 61.536 72.222 0.00 0.00 0.00 4.70
204 205 4.067512 TCTCTCGGGCAGGCTCCT 62.068 66.667 0.00 0.00 0.00 3.69
205 206 3.847602 CTCTCGGGCAGGCTCCTG 61.848 72.222 11.47 11.47 46.15 3.86
206 207 4.704103 TCTCGGGCAGGCTCCTGT 62.704 66.667 16.51 0.00 45.24 4.00
207 208 4.154347 CTCGGGCAGGCTCCTGTC 62.154 72.222 16.51 14.33 46.94 3.51
212 213 4.385405 GCAGGCTCCTGTCAGCGT 62.385 66.667 16.51 0.00 45.24 5.07
213 214 2.345244 CAGGCTCCTGTCAGCGTT 59.655 61.111 7.75 0.00 40.68 4.84
214 215 2.031516 CAGGCTCCTGTCAGCGTTG 61.032 63.158 7.75 0.00 40.68 4.10
215 216 2.743928 GGCTCCTGTCAGCGTTGG 60.744 66.667 0.00 0.00 40.68 3.77
216 217 2.343758 GCTCCTGTCAGCGTTGGA 59.656 61.111 0.00 0.00 0.00 3.53
217 218 2.029844 GCTCCTGTCAGCGTTGGAC 61.030 63.158 0.00 0.00 35.83 4.02
218 219 1.374758 CTCCTGTCAGCGTTGGACC 60.375 63.158 0.00 0.00 34.36 4.46
219 220 1.821061 CTCCTGTCAGCGTTGGACCT 61.821 60.000 0.00 0.00 34.36 3.85
220 221 1.669115 CCTGTCAGCGTTGGACCTG 60.669 63.158 0.00 0.00 34.36 4.00
221 222 1.669115 CTGTCAGCGTTGGACCTGG 60.669 63.158 0.00 0.00 34.36 4.45
222 223 2.099652 CTGTCAGCGTTGGACCTGGA 62.100 60.000 0.00 0.00 34.36 3.86
223 224 1.668151 GTCAGCGTTGGACCTGGAC 60.668 63.158 0.00 0.00 0.00 4.02
224 225 1.837051 TCAGCGTTGGACCTGGACT 60.837 57.895 0.00 0.00 0.00 3.85
225 226 1.374758 CAGCGTTGGACCTGGACTC 60.375 63.158 0.00 0.00 0.00 3.36
226 227 2.432628 GCGTTGGACCTGGACTCG 60.433 66.667 0.00 2.90 0.00 4.18
227 228 2.927580 GCGTTGGACCTGGACTCGA 61.928 63.158 0.00 0.00 0.00 4.04
228 229 1.890894 CGTTGGACCTGGACTCGAT 59.109 57.895 0.00 0.00 0.00 3.59
229 230 0.246635 CGTTGGACCTGGACTCGATT 59.753 55.000 0.00 0.00 0.00 3.34
230 231 1.736032 CGTTGGACCTGGACTCGATTC 60.736 57.143 0.00 0.00 0.00 2.52
231 232 1.275291 GTTGGACCTGGACTCGATTCA 59.725 52.381 0.00 0.00 0.00 2.57
232 233 1.639722 TGGACCTGGACTCGATTCAA 58.360 50.000 0.00 0.00 0.00 2.69
233 234 1.974957 TGGACCTGGACTCGATTCAAA 59.025 47.619 0.00 0.00 0.00 2.69
234 235 2.571653 TGGACCTGGACTCGATTCAAAT 59.428 45.455 0.00 0.00 0.00 2.32
235 236 3.198872 GGACCTGGACTCGATTCAAATC 58.801 50.000 0.00 0.00 0.00 2.17
246 247 3.194005 GATTCAAATCGCCTACCAGGA 57.806 47.619 0.00 0.00 37.67 3.86
247 248 2.691409 TTCAAATCGCCTACCAGGAG 57.309 50.000 0.00 0.00 37.67 3.69
248 249 1.568504 TCAAATCGCCTACCAGGAGT 58.431 50.000 0.00 0.00 37.67 3.85
249 250 2.742348 TCAAATCGCCTACCAGGAGTA 58.258 47.619 0.00 0.00 37.67 2.59
250 251 2.693591 TCAAATCGCCTACCAGGAGTAG 59.306 50.000 0.00 0.00 46.99 2.57
251 252 2.431057 CAAATCGCCTACCAGGAGTAGT 59.569 50.000 0.00 0.00 46.15 2.73
252 253 3.589951 AATCGCCTACCAGGAGTAGTA 57.410 47.619 0.00 0.00 46.15 1.82
253 254 3.589951 ATCGCCTACCAGGAGTAGTAA 57.410 47.619 0.00 0.00 46.15 2.24
254 255 3.370840 TCGCCTACCAGGAGTAGTAAA 57.629 47.619 0.00 0.00 46.15 2.01
255 256 3.907221 TCGCCTACCAGGAGTAGTAAAT 58.093 45.455 0.00 0.00 46.15 1.40
256 257 5.052693 TCGCCTACCAGGAGTAGTAAATA 57.947 43.478 0.00 0.00 46.15 1.40
257 258 4.823989 TCGCCTACCAGGAGTAGTAAATAC 59.176 45.833 0.00 0.00 46.15 1.89
258 259 4.581824 CGCCTACCAGGAGTAGTAAATACA 59.418 45.833 0.00 0.00 46.15 2.29
259 260 5.278364 CGCCTACCAGGAGTAGTAAATACAG 60.278 48.000 0.00 0.00 46.15 2.74
260 261 5.597594 GCCTACCAGGAGTAGTAAATACAGT 59.402 44.000 0.00 0.00 46.15 3.55
261 262 6.461231 GCCTACCAGGAGTAGTAAATACAGTG 60.461 46.154 0.00 0.00 46.15 3.66
262 263 5.340439 ACCAGGAGTAGTAAATACAGTGC 57.660 43.478 0.00 0.00 36.79 4.40
263 264 4.161754 ACCAGGAGTAGTAAATACAGTGCC 59.838 45.833 0.00 0.00 36.79 5.01
264 265 4.443034 CCAGGAGTAGTAAATACAGTGCCC 60.443 50.000 0.00 0.00 36.79 5.36
265 266 3.710165 AGGAGTAGTAAATACAGTGCCCC 59.290 47.826 0.00 0.00 36.79 5.80
266 267 3.492137 GGAGTAGTAAATACAGTGCCCCG 60.492 52.174 0.00 0.00 36.79 5.73
267 268 2.159000 AGTAGTAAATACAGTGCCCCGC 60.159 50.000 0.00 0.00 36.79 6.13
268 269 0.616371 AGTAAATACAGTGCCCCGCA 59.384 50.000 0.00 0.00 35.60 5.69
269 270 1.014352 GTAAATACAGTGCCCCGCAG 58.986 55.000 0.00 0.00 40.08 5.18
270 271 0.746563 TAAATACAGTGCCCCGCAGC 60.747 55.000 0.00 0.00 40.08 5.25
271 272 2.762969 AAATACAGTGCCCCGCAGCA 62.763 55.000 0.00 0.00 40.08 4.41
272 273 3.687321 ATACAGTGCCCCGCAGCAG 62.687 63.158 0.00 0.00 45.14 4.24
304 305 4.832608 GGTCGCCGGTGTGGATCC 62.833 72.222 16.01 4.20 42.00 3.36
308 309 4.778143 GCCGGTGTGGATCCGCTT 62.778 66.667 25.23 0.00 45.71 4.68
309 310 2.819595 CCGGTGTGGATCCGCTTG 60.820 66.667 25.23 14.45 45.71 4.01
310 311 3.499737 CGGTGTGGATCCGCTTGC 61.500 66.667 25.23 14.94 41.48 4.01
311 312 2.045926 GGTGTGGATCCGCTTGCT 60.046 61.111 25.23 0.00 0.00 3.91
312 313 1.675641 GGTGTGGATCCGCTTGCTT 60.676 57.895 25.23 0.00 0.00 3.91
313 314 1.503542 GTGTGGATCCGCTTGCTTG 59.496 57.895 25.23 0.00 0.00 4.01
314 315 1.073025 TGTGGATCCGCTTGCTTGT 59.927 52.632 25.23 0.00 0.00 3.16
315 316 0.955428 TGTGGATCCGCTTGCTTGTC 60.955 55.000 25.23 0.00 0.00 3.18
316 317 0.674895 GTGGATCCGCTTGCTTGTCT 60.675 55.000 18.40 0.00 0.00 3.41
317 318 0.674581 TGGATCCGCTTGCTTGTCTG 60.675 55.000 7.39 0.00 0.00 3.51
318 319 0.674895 GGATCCGCTTGCTTGTCTGT 60.675 55.000 0.00 0.00 0.00 3.41
319 320 1.160137 GATCCGCTTGCTTGTCTGTT 58.840 50.000 0.00 0.00 0.00 3.16
320 321 1.537202 GATCCGCTTGCTTGTCTGTTT 59.463 47.619 0.00 0.00 0.00 2.83
321 322 0.662619 TCCGCTTGCTTGTCTGTTTG 59.337 50.000 0.00 0.00 0.00 2.93
322 323 0.381801 CCGCTTGCTTGTCTGTTTGT 59.618 50.000 0.00 0.00 0.00 2.83
323 324 1.202290 CCGCTTGCTTGTCTGTTTGTT 60.202 47.619 0.00 0.00 0.00 2.83
324 325 2.529151 CGCTTGCTTGTCTGTTTGTTT 58.471 42.857 0.00 0.00 0.00 2.83
325 326 3.488384 CCGCTTGCTTGTCTGTTTGTTTA 60.488 43.478 0.00 0.00 0.00 2.01
326 327 3.482110 CGCTTGCTTGTCTGTTTGTTTAC 59.518 43.478 0.00 0.00 0.00 2.01
327 328 4.672409 GCTTGCTTGTCTGTTTGTTTACT 58.328 39.130 0.00 0.00 0.00 2.24
328 329 4.735338 GCTTGCTTGTCTGTTTGTTTACTC 59.265 41.667 0.00 0.00 0.00 2.59
329 330 5.449177 GCTTGCTTGTCTGTTTGTTTACTCT 60.449 40.000 0.00 0.00 0.00 3.24
330 331 6.509418 TTGCTTGTCTGTTTGTTTACTCTT 57.491 33.333 0.00 0.00 0.00 2.85
331 332 6.509418 TGCTTGTCTGTTTGTTTACTCTTT 57.491 33.333 0.00 0.00 0.00 2.52
332 333 6.321717 TGCTTGTCTGTTTGTTTACTCTTTG 58.678 36.000 0.00 0.00 0.00 2.77
333 334 6.072175 TGCTTGTCTGTTTGTTTACTCTTTGT 60.072 34.615 0.00 0.00 0.00 2.83
334 335 6.806739 GCTTGTCTGTTTGTTTACTCTTTGTT 59.193 34.615 0.00 0.00 0.00 2.83
335 336 7.008357 GCTTGTCTGTTTGTTTACTCTTTGTTC 59.992 37.037 0.00 0.00 0.00 3.18
336 337 7.681939 TGTCTGTTTGTTTACTCTTTGTTCT 57.318 32.000 0.00 0.00 0.00 3.01
337 338 8.106247 TGTCTGTTTGTTTACTCTTTGTTCTT 57.894 30.769 0.00 0.00 0.00 2.52
338 339 8.234546 TGTCTGTTTGTTTACTCTTTGTTCTTC 58.765 33.333 0.00 0.00 0.00 2.87
339 340 7.696872 GTCTGTTTGTTTACTCTTTGTTCTTCC 59.303 37.037 0.00 0.00 0.00 3.46
340 341 7.610305 TCTGTTTGTTTACTCTTTGTTCTTCCT 59.390 33.333 0.00 0.00 0.00 3.36
341 342 7.758495 TGTTTGTTTACTCTTTGTTCTTCCTC 58.242 34.615 0.00 0.00 0.00 3.71
342 343 6.937436 TTGTTTACTCTTTGTTCTTCCTCC 57.063 37.500 0.00 0.00 0.00 4.30
343 344 6.248569 TGTTTACTCTTTGTTCTTCCTCCT 57.751 37.500 0.00 0.00 0.00 3.69
344 345 6.055588 TGTTTACTCTTTGTTCTTCCTCCTG 58.944 40.000 0.00 0.00 0.00 3.86
345 346 6.126883 TGTTTACTCTTTGTTCTTCCTCCTGA 60.127 38.462 0.00 0.00 0.00 3.86
346 347 4.344359 ACTCTTTGTTCTTCCTCCTGAC 57.656 45.455 0.00 0.00 0.00 3.51
347 348 3.243907 ACTCTTTGTTCTTCCTCCTGACG 60.244 47.826 0.00 0.00 0.00 4.35
348 349 1.801178 CTTTGTTCTTCCTCCTGACGC 59.199 52.381 0.00 0.00 0.00 5.19
349 350 0.756294 TTGTTCTTCCTCCTGACGCA 59.244 50.000 0.00 0.00 0.00 5.24
350 351 0.318441 TGTTCTTCCTCCTGACGCAG 59.682 55.000 0.52 0.52 0.00 5.18
351 352 1.016653 GTTCTTCCTCCTGACGCAGC 61.017 60.000 1.84 0.00 0.00 5.25
352 353 2.492449 TTCTTCCTCCTGACGCAGCG 62.492 60.000 14.82 14.82 0.00 5.18
353 354 2.989253 TTCCTCCTGACGCAGCGA 60.989 61.111 24.65 0.00 0.00 4.93
354 355 2.290122 CTTCCTCCTGACGCAGCGAT 62.290 60.000 24.65 5.58 0.00 4.58
355 356 2.563050 TTCCTCCTGACGCAGCGATG 62.563 60.000 24.65 10.50 0.00 3.84
356 357 2.182791 CTCCTGACGCAGCGATGT 59.817 61.111 24.65 0.00 0.00 3.06
357 358 2.125952 TCCTGACGCAGCGATGTG 60.126 61.111 24.65 13.50 0.00 3.21
358 359 3.857854 CCTGACGCAGCGATGTGC 61.858 66.667 24.65 7.88 46.98 4.57
369 370 4.899239 GATGTGCTCCTCGGGCGG 62.899 72.222 0.00 0.00 0.00 6.13
375 376 2.663196 CTCCTCGGGCGGAGTTTT 59.337 61.111 19.14 0.00 44.49 2.43
376 377 1.448013 CTCCTCGGGCGGAGTTTTC 60.448 63.158 19.14 0.00 44.49 2.29
377 378 1.889530 CTCCTCGGGCGGAGTTTTCT 61.890 60.000 19.14 0.00 44.49 2.52
378 379 0.612732 TCCTCGGGCGGAGTTTTCTA 60.613 55.000 19.14 0.00 41.46 2.10
379 380 0.248289 CCTCGGGCGGAGTTTTCTAA 59.752 55.000 19.14 0.00 41.46 2.10
380 381 1.134491 CCTCGGGCGGAGTTTTCTAAT 60.134 52.381 19.14 0.00 41.46 1.73
381 382 1.933853 CTCGGGCGGAGTTTTCTAATG 59.066 52.381 13.45 0.00 38.02 1.90
382 383 1.014352 CGGGCGGAGTTTTCTAATGG 58.986 55.000 0.00 0.00 0.00 3.16
383 384 1.406341 CGGGCGGAGTTTTCTAATGGA 60.406 52.381 0.00 0.00 0.00 3.41
384 385 2.289565 GGGCGGAGTTTTCTAATGGAG 58.710 52.381 0.00 0.00 0.00 3.86
385 386 1.671328 GGCGGAGTTTTCTAATGGAGC 59.329 52.381 0.00 0.00 0.00 4.70
386 387 1.671328 GCGGAGTTTTCTAATGGAGCC 59.329 52.381 0.00 0.00 0.00 4.70
387 388 1.933853 CGGAGTTTTCTAATGGAGCCG 59.066 52.381 0.00 0.00 0.00 5.52
388 389 2.418197 CGGAGTTTTCTAATGGAGCCGA 60.418 50.000 0.00 0.00 38.57 5.54
389 390 3.198872 GGAGTTTTCTAATGGAGCCGAG 58.801 50.000 0.00 0.00 0.00 4.63
390 391 3.198872 GAGTTTTCTAATGGAGCCGAGG 58.801 50.000 0.00 0.00 0.00 4.63
391 392 2.572104 AGTTTTCTAATGGAGCCGAGGT 59.428 45.455 0.00 0.00 0.00 3.85
392 393 2.678336 GTTTTCTAATGGAGCCGAGGTG 59.322 50.000 0.00 0.00 0.00 4.00
393 394 1.860641 TTCTAATGGAGCCGAGGTGA 58.139 50.000 0.00 0.00 0.00 4.02
394 395 2.088104 TCTAATGGAGCCGAGGTGAT 57.912 50.000 0.00 0.00 0.00 3.06
395 396 1.964223 TCTAATGGAGCCGAGGTGATC 59.036 52.381 0.00 0.00 0.00 2.92
396 397 1.688735 CTAATGGAGCCGAGGTGATCA 59.311 52.381 0.00 0.00 0.00 2.92
397 398 0.179000 AATGGAGCCGAGGTGATCAC 59.821 55.000 17.91 17.91 0.00 3.06
398 399 0.689080 ATGGAGCCGAGGTGATCACT 60.689 55.000 24.50 11.25 0.00 3.41
399 400 1.142748 GGAGCCGAGGTGATCACTG 59.857 63.158 24.50 14.52 0.00 3.66
400 401 1.608717 GGAGCCGAGGTGATCACTGT 61.609 60.000 24.50 12.88 0.00 3.55
401 402 0.179124 GAGCCGAGGTGATCACTGTC 60.179 60.000 24.50 19.12 0.00 3.51
402 403 1.517257 GCCGAGGTGATCACTGTCG 60.517 63.158 29.13 29.13 37.43 4.35
403 404 1.883732 CCGAGGTGATCACTGTCGT 59.116 57.895 31.23 14.17 36.62 4.34
404 405 0.456824 CCGAGGTGATCACTGTCGTG 60.457 60.000 31.23 23.84 42.59 4.35
405 406 1.073216 CGAGGTGATCACTGTCGTGC 61.073 60.000 28.37 13.12 40.99 5.34
406 407 0.244994 GAGGTGATCACTGTCGTGCT 59.755 55.000 24.50 11.59 40.99 4.40
407 408 0.244994 AGGTGATCACTGTCGTGCTC 59.755 55.000 24.50 5.40 40.99 4.26
408 409 0.737715 GGTGATCACTGTCGTGCTCC 60.738 60.000 24.50 0.77 40.99 4.70
409 410 0.737715 GTGATCACTGTCGTGCTCCC 60.738 60.000 18.83 0.00 40.99 4.30
410 411 1.184970 TGATCACTGTCGTGCTCCCA 61.185 55.000 0.00 0.00 40.99 4.37
411 412 0.737715 GATCACTGTCGTGCTCCCAC 60.738 60.000 0.00 0.00 40.99 4.61
412 413 1.188219 ATCACTGTCGTGCTCCCACT 61.188 55.000 0.00 0.00 40.99 4.00
413 414 1.373497 CACTGTCGTGCTCCCACTC 60.373 63.158 0.00 0.00 39.86 3.51
414 415 2.262915 CTGTCGTGCTCCCACTCC 59.737 66.667 0.00 0.00 39.86 3.85
415 416 3.302347 CTGTCGTGCTCCCACTCCC 62.302 68.421 0.00 0.00 39.86 4.30
416 417 4.436998 GTCGTGCTCCCACTCCCG 62.437 72.222 0.00 0.00 39.86 5.14
417 418 4.988716 TCGTGCTCCCACTCCCGT 62.989 66.667 0.00 0.00 39.86 5.28
418 419 4.436998 CGTGCTCCCACTCCCGTC 62.437 72.222 0.00 0.00 39.86 4.79
419 420 4.083862 GTGCTCCCACTCCCGTCC 62.084 72.222 0.00 0.00 38.93 4.79
422 423 3.391382 CTCCCACTCCCGTCCCAC 61.391 72.222 0.00 0.00 0.00 4.61
426 427 3.391382 CACTCCCGTCCCACCCTC 61.391 72.222 0.00 0.00 0.00 4.30
437 438 4.154347 CACCCTCGCTCCCTGCTC 62.154 72.222 0.00 0.00 40.11 4.26
438 439 4.390556 ACCCTCGCTCCCTGCTCT 62.391 66.667 0.00 0.00 40.11 4.09
439 440 3.535962 CCCTCGCTCCCTGCTCTC 61.536 72.222 0.00 0.00 40.11 3.20
440 441 2.441901 CCTCGCTCCCTGCTCTCT 60.442 66.667 0.00 0.00 40.11 3.10
441 442 2.489275 CCTCGCTCCCTGCTCTCTC 61.489 68.421 0.00 0.00 40.11 3.20
442 443 2.441164 TCGCTCCCTGCTCTCTCC 60.441 66.667 0.00 0.00 40.11 3.71
443 444 3.535962 CGCTCCCTGCTCTCTCCC 61.536 72.222 0.00 0.00 40.11 4.30
444 445 3.160748 GCTCCCTGCTCTCTCCCC 61.161 72.222 0.00 0.00 38.95 4.81
445 446 2.695597 CTCCCTGCTCTCTCCCCT 59.304 66.667 0.00 0.00 0.00 4.79
446 447 1.761667 CTCCCTGCTCTCTCCCCTG 60.762 68.421 0.00 0.00 0.00 4.45
447 448 2.040278 CCCTGCTCTCTCCCCTGT 59.960 66.667 0.00 0.00 0.00 4.00
448 449 2.063378 CCCTGCTCTCTCCCCTGTC 61.063 68.421 0.00 0.00 0.00 3.51
449 450 2.422231 CCTGCTCTCTCCCCTGTCG 61.422 68.421 0.00 0.00 0.00 4.35
450 451 1.379176 CTGCTCTCTCCCCTGTCGA 60.379 63.158 0.00 0.00 0.00 4.20
451 452 1.662438 CTGCTCTCTCCCCTGTCGAC 61.662 65.000 9.11 9.11 0.00 4.20
452 453 2.419739 GCTCTCTCCCCTGTCGACC 61.420 68.421 14.12 0.00 0.00 4.79
453 454 1.755008 CTCTCTCCCCTGTCGACCC 60.755 68.421 14.12 0.00 0.00 4.46
454 455 3.141488 CTCTCCCCTGTCGACCCG 61.141 72.222 14.12 3.92 0.00 5.28
455 456 3.940506 CTCTCCCCTGTCGACCCGT 62.941 68.421 14.12 0.00 0.00 5.28
456 457 2.995574 CTCCCCTGTCGACCCGTT 60.996 66.667 14.12 0.00 0.00 4.44
457 458 2.524887 TCCCCTGTCGACCCGTTT 60.525 61.111 14.12 0.00 0.00 3.60
458 459 2.358247 CCCCTGTCGACCCGTTTG 60.358 66.667 14.12 0.00 0.00 2.93
459 460 3.047877 CCCTGTCGACCCGTTTGC 61.048 66.667 14.12 0.00 0.00 3.68
460 461 2.030562 CCTGTCGACCCGTTTGCT 59.969 61.111 14.12 0.00 0.00 3.91
461 462 2.317609 CCTGTCGACCCGTTTGCTG 61.318 63.158 14.12 0.00 0.00 4.41
462 463 2.954753 CTGTCGACCCGTTTGCTGC 61.955 63.158 14.12 0.00 0.00 5.25
463 464 3.723348 GTCGACCCGTTTGCTGCC 61.723 66.667 3.51 0.00 0.00 4.85
464 465 3.936203 TCGACCCGTTTGCTGCCT 61.936 61.111 0.00 0.00 0.00 4.75
465 466 3.726517 CGACCCGTTTGCTGCCTG 61.727 66.667 0.00 0.00 0.00 4.85
466 467 2.594592 GACCCGTTTGCTGCCTGT 60.595 61.111 0.00 0.00 0.00 4.00
467 468 2.906897 ACCCGTTTGCTGCCTGTG 60.907 61.111 0.00 0.00 0.00 3.66
468 469 4.347453 CCCGTTTGCTGCCTGTGC 62.347 66.667 0.00 0.00 38.26 4.57
469 470 4.347453 CCGTTTGCTGCCTGTGCC 62.347 66.667 0.00 0.00 36.33 5.01
470 471 4.688419 CGTTTGCTGCCTGTGCCG 62.688 66.667 0.00 0.00 36.33 5.69
471 472 4.347453 GTTTGCTGCCTGTGCCGG 62.347 66.667 0.00 0.00 36.33 6.13
472 473 4.577677 TTTGCTGCCTGTGCCGGA 62.578 61.111 5.05 0.00 36.33 5.14
521 522 4.680237 CGTTGGGTGCTCCGCTCA 62.680 66.667 0.00 0.00 38.76 4.26
522 523 3.050275 GTTGGGTGCTCCGCTCAC 61.050 66.667 0.00 0.00 38.76 3.51
523 524 3.241530 TTGGGTGCTCCGCTCACT 61.242 61.111 0.00 0.00 38.76 3.41
524 525 2.818169 TTGGGTGCTCCGCTCACTT 61.818 57.895 0.00 0.00 38.76 3.16
525 526 2.743928 GGGTGCTCCGCTCACTTG 60.744 66.667 0.00 0.00 34.97 3.16
526 527 2.031163 GGTGCTCCGCTCACTTGT 59.969 61.111 0.00 0.00 34.97 3.16
527 528 1.598130 GGTGCTCCGCTCACTTGTT 60.598 57.895 0.00 0.00 34.97 2.83
528 529 1.166531 GGTGCTCCGCTCACTTGTTT 61.167 55.000 0.00 0.00 34.97 2.83
529 530 0.663153 GTGCTCCGCTCACTTGTTTT 59.337 50.000 0.00 0.00 0.00 2.43
530 531 1.065551 GTGCTCCGCTCACTTGTTTTT 59.934 47.619 0.00 0.00 0.00 1.94
555 556 9.838339 TTTTAAGGATTTTTATCAGTTTTGCCA 57.162 25.926 0.00 0.00 0.00 4.92
557 558 9.651913 TTAAGGATTTTTATCAGTTTTGCCATC 57.348 29.630 0.00 0.00 0.00 3.51
558 559 6.332630 AGGATTTTTATCAGTTTTGCCATCG 58.667 36.000 0.00 0.00 0.00 3.84
559 560 5.519927 GGATTTTTATCAGTTTTGCCATCGG 59.480 40.000 0.00 0.00 0.00 4.18
560 561 5.461032 TTTTTATCAGTTTTGCCATCGGT 57.539 34.783 0.00 0.00 0.00 4.69
561 562 5.461032 TTTTATCAGTTTTGCCATCGGTT 57.539 34.783 0.00 0.00 0.00 4.44
562 563 4.433186 TTATCAGTTTTGCCATCGGTTG 57.567 40.909 0.00 0.00 0.00 3.77
563 564 1.686355 TCAGTTTTGCCATCGGTTGT 58.314 45.000 0.00 0.00 0.00 3.32
564 565 2.852449 TCAGTTTTGCCATCGGTTGTA 58.148 42.857 0.00 0.00 0.00 2.41
565 566 2.550606 TCAGTTTTGCCATCGGTTGTAC 59.449 45.455 0.00 0.00 0.00 2.90
566 567 2.552315 CAGTTTTGCCATCGGTTGTACT 59.448 45.455 0.00 0.00 0.00 2.73
567 568 2.552315 AGTTTTGCCATCGGTTGTACTG 59.448 45.455 0.00 0.00 0.00 2.74
568 569 0.878416 TTTGCCATCGGTTGTACTGC 59.122 50.000 0.00 0.00 0.00 4.40
569 570 0.250510 TTGCCATCGGTTGTACTGCA 60.251 50.000 0.00 0.00 0.00 4.41
570 571 0.953471 TGCCATCGGTTGTACTGCAC 60.953 55.000 0.00 0.00 0.00 4.57
571 572 0.673644 GCCATCGGTTGTACTGCACT 60.674 55.000 0.00 0.00 0.00 4.40
572 573 1.404986 GCCATCGGTTGTACTGCACTA 60.405 52.381 0.00 0.00 0.00 2.74
573 574 2.268298 CCATCGGTTGTACTGCACTAC 58.732 52.381 0.00 0.00 32.78 2.73
574 575 2.094182 CCATCGGTTGTACTGCACTACT 60.094 50.000 5.31 0.00 33.89 2.57
575 576 3.179830 CATCGGTTGTACTGCACTACTC 58.820 50.000 5.31 0.03 33.89 2.59
576 577 2.232399 TCGGTTGTACTGCACTACTCA 58.768 47.619 5.31 0.00 33.89 3.41
577 578 2.228103 TCGGTTGTACTGCACTACTCAG 59.772 50.000 5.31 0.00 33.89 3.35
578 579 2.030185 CGGTTGTACTGCACTACTCAGT 60.030 50.000 5.31 1.18 45.71 3.41
579 580 3.552273 CGGTTGTACTGCACTACTCAGTT 60.552 47.826 0.77 0.00 41.61 3.16
580 581 3.988517 GGTTGTACTGCACTACTCAGTTC 59.011 47.826 0.77 0.00 41.61 3.01
581 582 4.262079 GGTTGTACTGCACTACTCAGTTCT 60.262 45.833 0.77 0.00 41.61 3.01
582 583 4.505313 TGTACTGCACTACTCAGTTCTG 57.495 45.455 0.77 0.00 41.61 3.02
583 584 2.447244 ACTGCACTACTCAGTTCTGC 57.553 50.000 0.27 0.27 41.61 4.26
584 585 1.001406 ACTGCACTACTCAGTTCTGCC 59.999 52.381 4.37 0.00 41.61 4.85
644 645 0.947180 GTAGTTGCGACGAAAGCCCA 60.947 55.000 0.00 0.00 0.00 5.36
820 821 3.760151 GGCGAGGGGTTAAGTGTAAAATT 59.240 43.478 0.00 0.00 0.00 1.82
906 977 1.994885 CTCCCCGCTCCTCTCTCTCT 61.995 65.000 0.00 0.00 0.00 3.10
932 1003 1.211457 CTTCAATCCCTAGCCAGCACT 59.789 52.381 0.00 0.00 0.00 4.40
1273 1360 3.646611 TGACAAACATTACCTCGTCGA 57.353 42.857 0.00 0.00 0.00 4.20
1303 1390 1.134401 CGTGGATGCTATTGGTGAGGT 60.134 52.381 0.00 0.00 0.00 3.85
1455 1548 1.364678 TGATGTTAGGGAGGGAGGTGA 59.635 52.381 0.00 0.00 0.00 4.02
1824 2069 8.611654 ATTTTGCACTTCAGCTTTTATCATTT 57.388 26.923 0.00 0.00 34.99 2.32
1970 2221 8.565896 TGGATCAACATATTATTATCAGGCAC 57.434 34.615 0.00 0.00 0.00 5.01
2109 2360 2.794350 CCTAAACAAAAGCAAGTTGGCG 59.206 45.455 4.75 0.00 39.27 5.69
2276 2527 0.179032 TCGCAGCCAACCTTTTCTCA 60.179 50.000 0.00 0.00 0.00 3.27
2385 2636 3.023119 TCCTCTTCTTTTTGTGCAGCAA 58.977 40.909 0.00 0.00 34.87 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 2.756283 CTCGCCTCGGTTCCTCCT 60.756 66.667 0.00 0.00 0.00 3.69
128 129 2.754658 TCTCGCCTCGGTTCCTCC 60.755 66.667 0.00 0.00 0.00 4.30
129 130 1.720694 CTCTCTCGCCTCGGTTCCTC 61.721 65.000 0.00 0.00 0.00 3.71
130 131 1.751162 CTCTCTCGCCTCGGTTCCT 60.751 63.158 0.00 0.00 0.00 3.36
131 132 1.720694 CTCTCTCTCGCCTCGGTTCC 61.721 65.000 0.00 0.00 0.00 3.62
132 133 1.720694 CCTCTCTCTCGCCTCGGTTC 61.721 65.000 0.00 0.00 0.00 3.62
133 134 1.751162 CCTCTCTCTCGCCTCGGTT 60.751 63.158 0.00 0.00 0.00 4.44
134 135 2.124487 CCTCTCTCTCGCCTCGGT 60.124 66.667 0.00 0.00 0.00 4.69
135 136 2.904866 CCCTCTCTCTCGCCTCGG 60.905 72.222 0.00 0.00 0.00 4.63
136 137 2.904866 CCCCTCTCTCTCGCCTCG 60.905 72.222 0.00 0.00 0.00 4.63
137 138 2.520741 CCCCCTCTCTCTCGCCTC 60.521 72.222 0.00 0.00 0.00 4.70
138 139 3.024356 TCCCCCTCTCTCTCGCCT 61.024 66.667 0.00 0.00 0.00 5.52
139 140 2.520741 CTCCCCCTCTCTCTCGCC 60.521 72.222 0.00 0.00 0.00 5.54
140 141 2.520741 CCTCCCCCTCTCTCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
141 142 2.197324 CCCTCCCCCTCTCTCTCG 59.803 72.222 0.00 0.00 0.00 4.04
142 143 2.612251 CCCCTCCCCCTCTCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
143 144 3.039526 CCCCCTCCCCCTCTCTCT 61.040 72.222 0.00 0.00 0.00 3.10
158 159 2.983592 CGCCAAGACACCAACCCC 60.984 66.667 0.00 0.00 0.00 4.95
159 160 2.203294 ACGCCAAGACACCAACCC 60.203 61.111 0.00 0.00 0.00 4.11
160 161 2.551912 CCACGCCAAGACACCAACC 61.552 63.158 0.00 0.00 0.00 3.77
161 162 3.030652 CCACGCCAAGACACCAAC 58.969 61.111 0.00 0.00 0.00 3.77
162 163 2.904866 GCCACGCCAAGACACCAA 60.905 61.111 0.00 0.00 0.00 3.67
174 175 3.708220 GAGAGAGAAGCCGGCCACG 62.708 68.421 26.15 0.00 40.55 4.94
175 176 2.185608 GAGAGAGAAGCCGGCCAC 59.814 66.667 26.15 17.92 0.00 5.01
176 177 3.452786 CGAGAGAGAAGCCGGCCA 61.453 66.667 26.15 0.00 0.00 5.36
177 178 4.214327 CCGAGAGAGAAGCCGGCC 62.214 72.222 26.15 9.10 35.29 6.13
178 179 4.214327 CCCGAGAGAGAAGCCGGC 62.214 72.222 21.89 21.89 40.56 6.13
179 180 4.214327 GCCCGAGAGAGAAGCCGG 62.214 72.222 0.00 0.00 41.47 6.13
180 181 3.423162 CTGCCCGAGAGAGAAGCCG 62.423 68.421 0.00 0.00 0.00 5.52
181 182 2.498726 CTGCCCGAGAGAGAAGCC 59.501 66.667 0.00 0.00 0.00 4.35
182 183 2.498726 CCTGCCCGAGAGAGAAGC 59.501 66.667 0.00 0.00 0.00 3.86
183 184 2.015227 GAGCCTGCCCGAGAGAGAAG 62.015 65.000 0.00 0.00 0.00 2.85
184 185 2.038007 AGCCTGCCCGAGAGAGAA 59.962 61.111 0.00 0.00 0.00 2.87
185 186 2.441164 GAGCCTGCCCGAGAGAGA 60.441 66.667 0.00 0.00 0.00 3.10
186 187 3.535962 GGAGCCTGCCCGAGAGAG 61.536 72.222 0.00 0.00 0.00 3.20
187 188 4.067512 AGGAGCCTGCCCGAGAGA 62.068 66.667 0.00 0.00 0.00 3.10
188 189 3.847602 CAGGAGCCTGCCCGAGAG 61.848 72.222 3.18 0.00 37.24 3.20
197 198 2.345244 CAACGCTGACAGGAGCCT 59.655 61.111 4.26 0.00 35.36 4.58
198 199 2.743928 CCAACGCTGACAGGAGCC 60.744 66.667 4.26 0.00 35.36 4.70
199 200 2.029844 GTCCAACGCTGACAGGAGC 61.030 63.158 4.26 0.00 35.46 4.70
200 201 1.374758 GGTCCAACGCTGACAGGAG 60.375 63.158 4.26 0.00 34.36 3.69
201 202 1.837051 AGGTCCAACGCTGACAGGA 60.837 57.895 4.26 0.00 34.36 3.86
202 203 1.669115 CAGGTCCAACGCTGACAGG 60.669 63.158 4.26 0.00 34.36 4.00
203 204 1.669115 CCAGGTCCAACGCTGACAG 60.669 63.158 0.00 0.00 34.36 3.51
204 205 2.137528 TCCAGGTCCAACGCTGACA 61.138 57.895 0.00 0.00 34.36 3.58
205 206 1.668151 GTCCAGGTCCAACGCTGAC 60.668 63.158 0.00 0.00 0.00 3.51
206 207 1.816863 GAGTCCAGGTCCAACGCTGA 61.817 60.000 0.00 0.00 0.00 4.26
207 208 1.374758 GAGTCCAGGTCCAACGCTG 60.375 63.158 0.00 0.00 0.00 5.18
208 209 2.932234 CGAGTCCAGGTCCAACGCT 61.932 63.158 0.00 0.00 0.00 5.07
209 210 2.227089 ATCGAGTCCAGGTCCAACGC 62.227 60.000 0.00 0.00 0.00 4.84
210 211 0.246635 AATCGAGTCCAGGTCCAACG 59.753 55.000 0.00 0.00 0.00 4.10
211 212 1.275291 TGAATCGAGTCCAGGTCCAAC 59.725 52.381 10.80 0.00 0.00 3.77
212 213 1.639722 TGAATCGAGTCCAGGTCCAA 58.360 50.000 10.80 0.00 0.00 3.53
213 214 1.639722 TTGAATCGAGTCCAGGTCCA 58.360 50.000 10.80 0.00 0.00 4.02
214 215 2.762535 TTTGAATCGAGTCCAGGTCC 57.237 50.000 10.80 0.00 0.00 4.46
226 227 3.134458 CTCCTGGTAGGCGATTTGAATC 58.866 50.000 0.00 0.00 34.61 2.52
227 228 2.505819 ACTCCTGGTAGGCGATTTGAAT 59.494 45.455 0.00 0.00 34.61 2.57
228 229 1.906574 ACTCCTGGTAGGCGATTTGAA 59.093 47.619 0.00 0.00 34.61 2.69
229 230 1.568504 ACTCCTGGTAGGCGATTTGA 58.431 50.000 0.00 0.00 34.61 2.69
230 231 3.099267 CTACTCCTGGTAGGCGATTTG 57.901 52.381 0.00 0.00 42.97 2.32
239 240 5.361857 GGCACTGTATTTACTACTCCTGGTA 59.638 44.000 0.00 0.00 0.00 3.25
240 241 4.161754 GGCACTGTATTTACTACTCCTGGT 59.838 45.833 0.00 0.00 0.00 4.00
241 242 4.443034 GGGCACTGTATTTACTACTCCTGG 60.443 50.000 0.00 0.00 0.00 4.45
242 243 4.443034 GGGGCACTGTATTTACTACTCCTG 60.443 50.000 0.00 0.00 0.00 3.86
243 244 3.710165 GGGGCACTGTATTTACTACTCCT 59.290 47.826 0.00 0.00 0.00 3.69
244 245 3.492137 CGGGGCACTGTATTTACTACTCC 60.492 52.174 0.00 0.00 0.00 3.85
245 246 3.714391 CGGGGCACTGTATTTACTACTC 58.286 50.000 0.00 0.00 0.00 2.59
246 247 2.159000 GCGGGGCACTGTATTTACTACT 60.159 50.000 0.00 0.00 0.00 2.57
247 248 2.207590 GCGGGGCACTGTATTTACTAC 58.792 52.381 0.00 0.00 0.00 2.73
248 249 1.832366 TGCGGGGCACTGTATTTACTA 59.168 47.619 0.00 0.00 31.71 1.82
249 250 0.616371 TGCGGGGCACTGTATTTACT 59.384 50.000 0.00 0.00 31.71 2.24
250 251 1.014352 CTGCGGGGCACTGTATTTAC 58.986 55.000 0.00 0.00 33.79 2.01
251 252 0.746563 GCTGCGGGGCACTGTATTTA 60.747 55.000 0.00 0.00 33.79 1.40
252 253 2.046285 GCTGCGGGGCACTGTATTT 61.046 57.895 0.00 0.00 33.79 1.40
253 254 2.438434 GCTGCGGGGCACTGTATT 60.438 61.111 0.00 0.00 33.79 1.89
254 255 3.687321 CTGCTGCGGGGCACTGTAT 62.687 63.158 0.00 0.00 37.29 2.29
255 256 4.393155 CTGCTGCGGGGCACTGTA 62.393 66.667 0.00 0.00 37.29 2.74
287 288 4.832608 GGATCCACACCGGCGACC 62.833 72.222 9.30 0.00 33.14 4.79
294 295 1.675641 AAGCAAGCGGATCCACACC 60.676 57.895 13.41 0.00 0.00 4.16
295 296 1.237285 ACAAGCAAGCGGATCCACAC 61.237 55.000 13.41 0.00 0.00 3.82
296 297 0.955428 GACAAGCAAGCGGATCCACA 60.955 55.000 13.41 0.00 0.00 4.17
297 298 0.674895 AGACAAGCAAGCGGATCCAC 60.675 55.000 13.41 0.99 0.00 4.02
298 299 0.674581 CAGACAAGCAAGCGGATCCA 60.675 55.000 13.41 0.00 0.00 3.41
299 300 0.674895 ACAGACAAGCAAGCGGATCC 60.675 55.000 0.00 0.00 0.00 3.36
300 301 1.160137 AACAGACAAGCAAGCGGATC 58.840 50.000 0.00 0.00 0.00 3.36
301 302 1.267806 CAAACAGACAAGCAAGCGGAT 59.732 47.619 0.00 0.00 0.00 4.18
302 303 0.662619 CAAACAGACAAGCAAGCGGA 59.337 50.000 0.00 0.00 0.00 5.54
303 304 0.381801 ACAAACAGACAAGCAAGCGG 59.618 50.000 0.00 0.00 0.00 5.52
304 305 2.193306 AACAAACAGACAAGCAAGCG 57.807 45.000 0.00 0.00 0.00 4.68
305 306 4.672409 AGTAAACAAACAGACAAGCAAGC 58.328 39.130 0.00 0.00 0.00 4.01
306 307 6.124088 AGAGTAAACAAACAGACAAGCAAG 57.876 37.500 0.00 0.00 0.00 4.01
307 308 6.509418 AAGAGTAAACAAACAGACAAGCAA 57.491 33.333 0.00 0.00 0.00 3.91
308 309 6.072175 ACAAAGAGTAAACAAACAGACAAGCA 60.072 34.615 0.00 0.00 0.00 3.91
309 310 6.322491 ACAAAGAGTAAACAAACAGACAAGC 58.678 36.000 0.00 0.00 0.00 4.01
310 311 8.237267 AGAACAAAGAGTAAACAAACAGACAAG 58.763 33.333 0.00 0.00 0.00 3.16
311 312 8.106247 AGAACAAAGAGTAAACAAACAGACAA 57.894 30.769 0.00 0.00 0.00 3.18
312 313 7.681939 AGAACAAAGAGTAAACAAACAGACA 57.318 32.000 0.00 0.00 0.00 3.41
313 314 7.696872 GGAAGAACAAAGAGTAAACAAACAGAC 59.303 37.037 0.00 0.00 0.00 3.51
314 315 7.610305 AGGAAGAACAAAGAGTAAACAAACAGA 59.390 33.333 0.00 0.00 0.00 3.41
315 316 7.762382 AGGAAGAACAAAGAGTAAACAAACAG 58.238 34.615 0.00 0.00 0.00 3.16
316 317 7.148137 GGAGGAAGAACAAAGAGTAAACAAACA 60.148 37.037 0.00 0.00 0.00 2.83
317 318 7.067129 AGGAGGAAGAACAAAGAGTAAACAAAC 59.933 37.037 0.00 0.00 0.00 2.93
318 319 7.067008 CAGGAGGAAGAACAAAGAGTAAACAAA 59.933 37.037 0.00 0.00 0.00 2.83
319 320 6.542370 CAGGAGGAAGAACAAAGAGTAAACAA 59.458 38.462 0.00 0.00 0.00 2.83
320 321 6.055588 CAGGAGGAAGAACAAAGAGTAAACA 58.944 40.000 0.00 0.00 0.00 2.83
321 322 6.203145 GTCAGGAGGAAGAACAAAGAGTAAAC 59.797 42.308 0.00 0.00 0.00 2.01
322 323 6.289064 GTCAGGAGGAAGAACAAAGAGTAAA 58.711 40.000 0.00 0.00 0.00 2.01
323 324 5.509163 CGTCAGGAGGAAGAACAAAGAGTAA 60.509 44.000 0.00 0.00 0.00 2.24
324 325 4.022242 CGTCAGGAGGAAGAACAAAGAGTA 60.022 45.833 0.00 0.00 0.00 2.59
325 326 3.243907 CGTCAGGAGGAAGAACAAAGAGT 60.244 47.826 0.00 0.00 0.00 3.24
326 327 3.321497 CGTCAGGAGGAAGAACAAAGAG 58.679 50.000 0.00 0.00 0.00 2.85
327 328 2.548067 GCGTCAGGAGGAAGAACAAAGA 60.548 50.000 0.00 0.00 0.00 2.52
328 329 1.801178 GCGTCAGGAGGAAGAACAAAG 59.199 52.381 0.00 0.00 0.00 2.77
329 330 1.140052 TGCGTCAGGAGGAAGAACAAA 59.860 47.619 0.00 0.00 0.00 2.83
330 331 0.756294 TGCGTCAGGAGGAAGAACAA 59.244 50.000 0.00 0.00 0.00 2.83
331 332 0.318441 CTGCGTCAGGAGGAAGAACA 59.682 55.000 0.00 0.00 31.63 3.18
332 333 1.016653 GCTGCGTCAGGAGGAAGAAC 61.017 60.000 1.20 0.00 36.23 3.01
333 334 1.293498 GCTGCGTCAGGAGGAAGAA 59.707 57.895 1.20 0.00 36.23 2.52
334 335 2.973899 GCTGCGTCAGGAGGAAGA 59.026 61.111 1.20 0.00 36.23 2.87
335 336 2.290122 ATCGCTGCGTCAGGAGGAAG 62.290 60.000 22.48 0.00 36.23 3.46
336 337 2.351244 ATCGCTGCGTCAGGAGGAA 61.351 57.895 22.48 0.00 36.23 3.36
337 338 2.755876 ATCGCTGCGTCAGGAGGA 60.756 61.111 22.48 0.00 36.23 3.71
338 339 2.584418 CATCGCTGCGTCAGGAGG 60.584 66.667 22.48 0.00 36.23 4.30
339 340 2.163390 CACATCGCTGCGTCAGGAG 61.163 63.158 22.48 8.91 38.99 3.69
340 341 2.125952 CACATCGCTGCGTCAGGA 60.126 61.111 22.48 1.84 31.21 3.86
341 342 3.857854 GCACATCGCTGCGTCAGG 61.858 66.667 22.48 7.93 37.77 3.86
352 353 4.899239 CCGCCCGAGGAGCACATC 62.899 72.222 0.00 0.00 0.00 3.06
359 360 0.612732 TAGAAAACTCCGCCCGAGGA 60.613 55.000 0.91 0.00 43.57 3.71
360 361 0.248289 TTAGAAAACTCCGCCCGAGG 59.752 55.000 0.91 0.00 43.57 4.63
361 362 1.933853 CATTAGAAAACTCCGCCCGAG 59.066 52.381 0.00 0.00 44.95 4.63
362 363 1.406341 CCATTAGAAAACTCCGCCCGA 60.406 52.381 0.00 0.00 0.00 5.14
363 364 1.014352 CCATTAGAAAACTCCGCCCG 58.986 55.000 0.00 0.00 0.00 6.13
364 365 2.289565 CTCCATTAGAAAACTCCGCCC 58.710 52.381 0.00 0.00 0.00 6.13
365 366 1.671328 GCTCCATTAGAAAACTCCGCC 59.329 52.381 0.00 0.00 0.00 6.13
366 367 1.671328 GGCTCCATTAGAAAACTCCGC 59.329 52.381 0.00 0.00 0.00 5.54
367 368 1.933853 CGGCTCCATTAGAAAACTCCG 59.066 52.381 0.00 0.00 0.00 4.63
368 369 3.198872 CTCGGCTCCATTAGAAAACTCC 58.801 50.000 0.00 0.00 0.00 3.85
369 370 3.198872 CCTCGGCTCCATTAGAAAACTC 58.801 50.000 0.00 0.00 0.00 3.01
370 371 2.572104 ACCTCGGCTCCATTAGAAAACT 59.428 45.455 0.00 0.00 0.00 2.66
371 372 2.678336 CACCTCGGCTCCATTAGAAAAC 59.322 50.000 0.00 0.00 0.00 2.43
372 373 2.569853 TCACCTCGGCTCCATTAGAAAA 59.430 45.455 0.00 0.00 0.00 2.29
373 374 2.184533 TCACCTCGGCTCCATTAGAAA 58.815 47.619 0.00 0.00 0.00 2.52
374 375 1.860641 TCACCTCGGCTCCATTAGAA 58.139 50.000 0.00 0.00 0.00 2.10
375 376 1.964223 GATCACCTCGGCTCCATTAGA 59.036 52.381 0.00 0.00 0.00 2.10
376 377 1.688735 TGATCACCTCGGCTCCATTAG 59.311 52.381 0.00 0.00 0.00 1.73
377 378 1.412710 GTGATCACCTCGGCTCCATTA 59.587 52.381 15.31 0.00 0.00 1.90
378 379 0.179000 GTGATCACCTCGGCTCCATT 59.821 55.000 15.31 0.00 0.00 3.16
379 380 0.689080 AGTGATCACCTCGGCTCCAT 60.689 55.000 22.21 0.00 0.00 3.41
380 381 1.305297 AGTGATCACCTCGGCTCCA 60.305 57.895 22.21 0.00 0.00 3.86
381 382 1.142748 CAGTGATCACCTCGGCTCC 59.857 63.158 22.21 0.00 0.00 4.70
382 383 0.179124 GACAGTGATCACCTCGGCTC 60.179 60.000 22.21 4.53 0.00 4.70
383 384 1.893786 GACAGTGATCACCTCGGCT 59.106 57.895 22.21 0.00 0.00 5.52
384 385 1.517257 CGACAGTGATCACCTCGGC 60.517 63.158 25.52 16.14 31.85 5.54
385 386 1.883732 ACGACAGTGATCACCTCGG 59.116 57.895 31.54 19.60 36.73 4.63
396 397 2.574955 GGAGTGGGAGCACGACAGT 61.575 63.158 0.00 0.00 0.00 3.55
397 398 2.262915 GGAGTGGGAGCACGACAG 59.737 66.667 0.00 0.00 0.00 3.51
398 399 3.311110 GGGAGTGGGAGCACGACA 61.311 66.667 0.00 0.00 0.00 4.35
399 400 4.436998 CGGGAGTGGGAGCACGAC 62.437 72.222 0.00 0.00 0.00 4.34
400 401 4.988716 ACGGGAGTGGGAGCACGA 62.989 66.667 0.00 0.00 44.82 4.35
427 428 3.160748 GGGGAGAGAGCAGGGAGC 61.161 72.222 0.00 0.00 46.19 4.70
428 429 1.761667 CAGGGGAGAGAGCAGGGAG 60.762 68.421 0.00 0.00 0.00 4.30
429 430 2.366167 CAGGGGAGAGAGCAGGGA 59.634 66.667 0.00 0.00 0.00 4.20
430 431 2.040278 ACAGGGGAGAGAGCAGGG 59.960 66.667 0.00 0.00 0.00 4.45
431 432 2.422231 CGACAGGGGAGAGAGCAGG 61.422 68.421 0.00 0.00 0.00 4.85
432 433 1.379176 TCGACAGGGGAGAGAGCAG 60.379 63.158 0.00 0.00 0.00 4.24
433 434 1.679305 GTCGACAGGGGAGAGAGCA 60.679 63.158 11.55 0.00 0.00 4.26
434 435 2.419739 GGTCGACAGGGGAGAGAGC 61.420 68.421 18.91 0.00 0.00 4.09
435 436 1.755008 GGGTCGACAGGGGAGAGAG 60.755 68.421 18.91 0.00 0.00 3.20
436 437 2.359404 GGGTCGACAGGGGAGAGA 59.641 66.667 18.91 0.00 0.00 3.10
437 438 3.141488 CGGGTCGACAGGGGAGAG 61.141 72.222 18.91 0.00 0.00 3.20
438 439 3.518552 AACGGGTCGACAGGGGAGA 62.519 63.158 18.91 0.00 0.00 3.71
439 440 2.580601 AAACGGGTCGACAGGGGAG 61.581 63.158 18.91 3.93 0.00 4.30
440 441 2.524887 AAACGGGTCGACAGGGGA 60.525 61.111 18.91 0.00 0.00 4.81
441 442 2.358247 CAAACGGGTCGACAGGGG 60.358 66.667 18.91 5.40 0.00 4.79
442 443 3.047877 GCAAACGGGTCGACAGGG 61.048 66.667 18.91 8.02 0.00 4.45
443 444 2.030562 AGCAAACGGGTCGACAGG 59.969 61.111 18.91 10.69 0.00 4.00
444 445 2.954753 GCAGCAAACGGGTCGACAG 61.955 63.158 18.91 13.11 0.00 3.51
445 446 2.970324 GCAGCAAACGGGTCGACA 60.970 61.111 18.91 0.00 0.00 4.35
446 447 3.723348 GGCAGCAAACGGGTCGAC 61.723 66.667 7.13 7.13 0.00 4.20
447 448 3.936203 AGGCAGCAAACGGGTCGA 61.936 61.111 0.00 0.00 0.00 4.20
448 449 3.726517 CAGGCAGCAAACGGGTCG 61.727 66.667 0.00 0.00 0.00 4.79
449 450 2.594592 ACAGGCAGCAAACGGGTC 60.595 61.111 0.00 0.00 0.00 4.46
450 451 2.906897 CACAGGCAGCAAACGGGT 60.907 61.111 0.00 0.00 0.00 5.28
451 452 4.347453 GCACAGGCAGCAAACGGG 62.347 66.667 0.00 0.00 40.72 5.28
452 453 4.347453 GGCACAGGCAGCAAACGG 62.347 66.667 0.00 0.00 43.71 4.44
453 454 4.688419 CGGCACAGGCAGCAAACG 62.688 66.667 0.00 0.00 43.71 3.60
454 455 4.347453 CCGGCACAGGCAGCAAAC 62.347 66.667 0.00 0.00 43.71 2.93
455 456 4.577677 TCCGGCACAGGCAGCAAA 62.578 61.111 0.00 0.00 43.71 3.68
461 462 4.643387 AACACCTCCGGCACAGGC 62.643 66.667 7.59 0.00 33.84 4.85
462 463 2.669569 CAACACCTCCGGCACAGG 60.670 66.667 6.14 6.14 37.03 4.00
463 464 2.669569 CCAACACCTCCGGCACAG 60.670 66.667 0.00 0.00 0.00 3.66
464 465 4.947147 GCCAACACCTCCGGCACA 62.947 66.667 0.00 0.00 45.52 4.57
529 530 9.838339 TGGCAAAACTGATAAAAATCCTTAAAA 57.162 25.926 0.00 0.00 0.00 1.52
531 532 9.651913 GATGGCAAAACTGATAAAAATCCTTAA 57.348 29.630 0.00 0.00 0.00 1.85
532 533 7.973388 CGATGGCAAAACTGATAAAAATCCTTA 59.027 33.333 0.00 0.00 0.00 2.69
533 534 6.813152 CGATGGCAAAACTGATAAAAATCCTT 59.187 34.615 0.00 0.00 0.00 3.36
534 535 6.332630 CGATGGCAAAACTGATAAAAATCCT 58.667 36.000 0.00 0.00 0.00 3.24
535 536 5.519927 CCGATGGCAAAACTGATAAAAATCC 59.480 40.000 0.00 0.00 0.00 3.01
536 537 6.099341 ACCGATGGCAAAACTGATAAAAATC 58.901 36.000 0.00 0.00 0.00 2.17
537 538 6.036577 ACCGATGGCAAAACTGATAAAAAT 57.963 33.333 0.00 0.00 0.00 1.82
538 539 5.461032 ACCGATGGCAAAACTGATAAAAA 57.539 34.783 0.00 0.00 0.00 1.94
539 540 5.221342 ACAACCGATGGCAAAACTGATAAAA 60.221 36.000 0.00 0.00 0.00 1.52
540 541 4.279671 ACAACCGATGGCAAAACTGATAAA 59.720 37.500 0.00 0.00 0.00 1.40
541 542 3.823873 ACAACCGATGGCAAAACTGATAA 59.176 39.130 0.00 0.00 0.00 1.75
542 543 3.417101 ACAACCGATGGCAAAACTGATA 58.583 40.909 0.00 0.00 0.00 2.15
543 544 2.238521 ACAACCGATGGCAAAACTGAT 58.761 42.857 0.00 0.00 0.00 2.90
544 545 1.686355 ACAACCGATGGCAAAACTGA 58.314 45.000 0.00 0.00 0.00 3.41
545 546 2.552315 AGTACAACCGATGGCAAAACTG 59.448 45.455 0.00 0.00 0.00 3.16
546 547 2.552315 CAGTACAACCGATGGCAAAACT 59.448 45.455 0.00 0.00 0.00 2.66
547 548 2.920647 GCAGTACAACCGATGGCAAAAC 60.921 50.000 0.00 0.00 0.00 2.43
548 549 1.268352 GCAGTACAACCGATGGCAAAA 59.732 47.619 0.00 0.00 0.00 2.44
549 550 0.878416 GCAGTACAACCGATGGCAAA 59.122 50.000 0.00 0.00 0.00 3.68
550 551 0.250510 TGCAGTACAACCGATGGCAA 60.251 50.000 0.00 0.00 0.00 4.52
551 552 0.953471 GTGCAGTACAACCGATGGCA 60.953 55.000 0.00 0.00 0.00 4.92
552 553 0.673644 AGTGCAGTACAACCGATGGC 60.674 55.000 0.00 0.00 0.00 4.40
553 554 2.094182 AGTAGTGCAGTACAACCGATGG 60.094 50.000 28.82 0.00 0.00 3.51
554 555 3.179830 GAGTAGTGCAGTACAACCGATG 58.820 50.000 28.82 0.00 0.00 3.84
555 556 2.823747 TGAGTAGTGCAGTACAACCGAT 59.176 45.455 28.82 10.92 0.00 4.18
556 557 2.228103 CTGAGTAGTGCAGTACAACCGA 59.772 50.000 28.82 10.15 0.00 4.69
557 558 2.030185 ACTGAGTAGTGCAGTACAACCG 60.030 50.000 28.82 20.38 44.27 4.44
558 559 3.662247 ACTGAGTAGTGCAGTACAACC 57.338 47.619 28.82 18.73 44.27 3.77
559 560 4.681942 CAGAACTGAGTAGTGCAGTACAAC 59.318 45.833 28.82 22.14 45.27 3.32
560 561 4.796290 GCAGAACTGAGTAGTGCAGTACAA 60.796 45.833 28.82 17.55 45.27 2.41
561 562 3.305403 GCAGAACTGAGTAGTGCAGTACA 60.305 47.826 28.82 12.08 45.27 2.90
562 563 3.246619 GCAGAACTGAGTAGTGCAGTAC 58.753 50.000 21.85 21.85 45.27 2.73
563 564 2.231478 GGCAGAACTGAGTAGTGCAGTA 59.769 50.000 17.61 0.00 45.27 2.74
565 566 1.001293 TGGCAGAACTGAGTAGTGCAG 59.999 52.381 17.61 0.00 37.19 4.41
566 567 1.047801 TGGCAGAACTGAGTAGTGCA 58.952 50.000 17.61 4.89 37.19 4.57
567 568 1.001406 AGTGGCAGAACTGAGTAGTGC 59.999 52.381 9.87 9.87 37.19 4.40
568 569 4.521130 TTAGTGGCAGAACTGAGTAGTG 57.479 45.455 5.97 0.00 37.19 2.74
569 570 5.746990 ATTTAGTGGCAGAACTGAGTAGT 57.253 39.130 5.97 0.00 39.32 2.73
570 571 7.440523 AAAATTTAGTGGCAGAACTGAGTAG 57.559 36.000 5.97 0.00 0.00 2.57
571 572 7.817418 AAAAATTTAGTGGCAGAACTGAGTA 57.183 32.000 5.97 0.00 0.00 2.59
572 573 6.715347 AAAAATTTAGTGGCAGAACTGAGT 57.285 33.333 5.97 0.00 0.00 3.41
644 645 7.487189 CGTATTTCTAAGTTCAGTGACCGTATT 59.513 37.037 0.00 0.00 0.00 1.89
820 821 1.531840 GAGATAGAGGAGCGGGGCA 60.532 63.158 0.00 0.00 0.00 5.36
906 977 0.753262 GCTAGGGATTGAAGAGCGGA 59.247 55.000 0.00 0.00 0.00 5.54
1273 1360 2.514592 CATCCACGGCGGCATCTT 60.515 61.111 13.24 0.00 33.14 2.40
1303 1390 0.909610 ATGCTCCCTTCGTTCCTCCA 60.910 55.000 0.00 0.00 0.00 3.86
1455 1548 6.015688 ACAAACAACATCTTCATCAGCTTCAT 60.016 34.615 0.00 0.00 0.00 2.57
1970 2221 6.931281 GGATGATGGATGGTAATATGATACCG 59.069 42.308 4.80 0.00 46.94 4.02
2276 2527 2.490903 GGCAATTGCACAGAGAGAACAT 59.509 45.455 30.32 0.00 44.36 2.71
2385 2636 6.493189 AAAAGAAGAGGAGAAGAGACTTGT 57.507 37.500 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.