Multiple sequence alignment - TraesCS5B01G318800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G318800 chr5B 100.000 3562 0 0 1 3562 503117639 503114078 0.000000e+00 6578.0
1 TraesCS5B01G318800 chr5B 96.303 568 19 2 2996 3562 477522657 477523223 0.000000e+00 931.0
2 TraesCS5B01G318800 chr5B 97.321 112 3 0 1 112 503117507 503117396 1.310000e-44 191.0
3 TraesCS5B01G318800 chr5D 94.890 1820 79 6 794 2606 416259368 416257556 0.000000e+00 2833.0
4 TraesCS5B01G318800 chr5A 95.393 1780 64 8 813 2585 529081201 529079433 0.000000e+00 2817.0
5 TraesCS5B01G318800 chr5A 97.436 39 1 0 777 815 529081514 529081476 2.290000e-07 67.6
6 TraesCS5B01G318800 chr7A 86.267 1551 176 26 1010 2555 8890857 8889339 0.000000e+00 1650.0
7 TraesCS5B01G318800 chr7A 91.108 731 52 9 56 776 22185870 22186597 0.000000e+00 977.0
8 TraesCS5B01G318800 chr7A 88.527 706 72 6 79 777 538750078 538750781 0.000000e+00 846.0
9 TraesCS5B01G318800 chr7D 84.755 1548 192 26 1010 2555 8381925 8380420 0.000000e+00 1511.0
10 TraesCS5B01G318800 chr7D 84.379 1562 190 30 1013 2563 8454242 8452724 0.000000e+00 1483.0
11 TraesCS5B01G318800 chr1B 96.316 570 19 2 2994 3562 483139067 483138499 0.000000e+00 935.0
12 TraesCS5B01G318800 chr4A 84.298 968 131 13 1607 2570 731380614 731381564 0.000000e+00 926.0
13 TraesCS5B01G318800 chr4A 89.679 717 63 8 69 776 211473527 211472813 0.000000e+00 904.0
14 TraesCS5B01G318800 chr4A 88.503 748 63 12 42 779 16180330 16181064 0.000000e+00 883.0
15 TraesCS5B01G318800 chr4A 92.619 569 36 5 2996 3562 16489202 16489766 0.000000e+00 813.0
16 TraesCS5B01G318800 chr4A 95.536 112 5 0 1 112 211473462 211473351 2.830000e-41 180.0
17 TraesCS5B01G318800 chr3B 95.958 569 20 3 2996 3562 27205591 27206158 0.000000e+00 920.0
18 TraesCS5B01G318800 chr3B 89.458 683 65 6 66 744 459778000 459778679 0.000000e+00 856.0
19 TraesCS5B01G318800 chr3B 84.792 697 93 10 89 777 615629651 615630342 0.000000e+00 688.0
20 TraesCS5B01G318800 chr3B 96.330 109 4 0 1 109 459778068 459778176 2.830000e-41 180.0
21 TraesCS5B01G318800 chr3A 89.247 744 66 10 42 776 454422779 454423517 0.000000e+00 918.0
22 TraesCS5B01G318800 chr3A 88.978 744 69 9 42 776 654018004 654018743 0.000000e+00 907.0
23 TraesCS5B01G318800 chr3A 90.909 110 8 2 4 112 454422872 454422980 2.870000e-31 147.0
24 TraesCS5B01G318800 chr7B 94.912 570 25 3 2994 3562 628754629 628755195 0.000000e+00 889.0
25 TraesCS5B01G318800 chr2A 88.172 744 74 10 42 776 749758919 749759657 0.000000e+00 874.0
26 TraesCS5B01G318800 chr2A 77.495 1493 276 44 1012 2473 13004706 13003243 0.000000e+00 841.0
27 TraesCS5B01G318800 chr2A 92.794 569 35 5 2996 3562 100667236 100666672 0.000000e+00 819.0
28 TraesCS5B01G318800 chr2A 77.146 862 157 24 1607 2451 544332456 544333294 6.970000e-127 464.0
29 TraesCS5B01G318800 chr2A 73.490 894 181 38 1613 2478 13068419 13067554 1.620000e-73 287.0
30 TraesCS5B01G318800 chr2A 73.479 822 172 40 1676 2481 448153809 448154600 5.860000e-68 268.0
31 TraesCS5B01G318800 chr4B 93.838 568 30 4 2996 3562 653529523 653530086 0.000000e+00 850.0
32 TraesCS5B01G318800 chr2B 93.838 568 30 4 2996 3562 578212414 578211851 0.000000e+00 850.0
33 TraesCS5B01G318800 chr2B 77.057 863 156 25 1607 2451 481899864 481900702 3.240000e-125 459.0
34 TraesCS5B01G318800 chr2B 82.460 496 80 5 1019 1512 19102541 19102051 9.140000e-116 427.0
35 TraesCS5B01G318800 chr2B 80.388 464 82 8 1013 1473 18913698 18914155 9.470000e-91 344.0
36 TraesCS5B01G318800 chr2B 78.643 501 91 11 1020 1512 19075087 19074595 5.740000e-83 318.0
37 TraesCS5B01G318800 chr1A 92.483 572 37 5 2993 3562 376712895 376713462 0.000000e+00 813.0
38 TraesCS5B01G318800 chr2D 73.620 1486 317 66 1019 2473 337923087 337924528 1.480000e-138 503.0
39 TraesCS5B01G318800 chr2D 77.030 862 158 24 1607 2451 406261413 406262251 3.240000e-125 459.0
40 TraesCS5B01G318800 chr6A 76.531 784 128 44 1690 2451 592817843 592817094 9.330000e-101 377.0
41 TraesCS5B01G318800 chr6B 77.778 504 107 4 1013 1512 612745129 612744627 4.470000e-79 305.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G318800 chr5B 503114078 503117639 3561 True 3384.5 6578 98.6605 1 3562 2 chr5B.!!$R1 3561
1 TraesCS5B01G318800 chr5B 477522657 477523223 566 False 931.0 931 96.3030 2996 3562 1 chr5B.!!$F1 566
2 TraesCS5B01G318800 chr5D 416257556 416259368 1812 True 2833.0 2833 94.8900 794 2606 1 chr5D.!!$R1 1812
3 TraesCS5B01G318800 chr5A 529079433 529081514 2081 True 1442.3 2817 96.4145 777 2585 2 chr5A.!!$R1 1808
4 TraesCS5B01G318800 chr7A 8889339 8890857 1518 True 1650.0 1650 86.2670 1010 2555 1 chr7A.!!$R1 1545
5 TraesCS5B01G318800 chr7A 22185870 22186597 727 False 977.0 977 91.1080 56 776 1 chr7A.!!$F1 720
6 TraesCS5B01G318800 chr7A 538750078 538750781 703 False 846.0 846 88.5270 79 777 1 chr7A.!!$F2 698
7 TraesCS5B01G318800 chr7D 8380420 8381925 1505 True 1511.0 1511 84.7550 1010 2555 1 chr7D.!!$R1 1545
8 TraesCS5B01G318800 chr7D 8452724 8454242 1518 True 1483.0 1483 84.3790 1013 2563 1 chr7D.!!$R2 1550
9 TraesCS5B01G318800 chr1B 483138499 483139067 568 True 935.0 935 96.3160 2994 3562 1 chr1B.!!$R1 568
10 TraesCS5B01G318800 chr4A 731380614 731381564 950 False 926.0 926 84.2980 1607 2570 1 chr4A.!!$F3 963
11 TraesCS5B01G318800 chr4A 16180330 16181064 734 False 883.0 883 88.5030 42 779 1 chr4A.!!$F1 737
12 TraesCS5B01G318800 chr4A 16489202 16489766 564 False 813.0 813 92.6190 2996 3562 1 chr4A.!!$F2 566
13 TraesCS5B01G318800 chr4A 211472813 211473527 714 True 542.0 904 92.6075 1 776 2 chr4A.!!$R1 775
14 TraesCS5B01G318800 chr3B 27205591 27206158 567 False 920.0 920 95.9580 2996 3562 1 chr3B.!!$F1 566
15 TraesCS5B01G318800 chr3B 615629651 615630342 691 False 688.0 688 84.7920 89 777 1 chr3B.!!$F2 688
16 TraesCS5B01G318800 chr3B 459778000 459778679 679 False 518.0 856 92.8940 1 744 2 chr3B.!!$F3 743
17 TraesCS5B01G318800 chr3A 654018004 654018743 739 False 907.0 907 88.9780 42 776 1 chr3A.!!$F1 734
18 TraesCS5B01G318800 chr3A 454422779 454423517 738 False 532.5 918 90.0780 4 776 2 chr3A.!!$F2 772
19 TraesCS5B01G318800 chr7B 628754629 628755195 566 False 889.0 889 94.9120 2994 3562 1 chr7B.!!$F1 568
20 TraesCS5B01G318800 chr2A 749758919 749759657 738 False 874.0 874 88.1720 42 776 1 chr2A.!!$F3 734
21 TraesCS5B01G318800 chr2A 13003243 13004706 1463 True 841.0 841 77.4950 1012 2473 1 chr2A.!!$R1 1461
22 TraesCS5B01G318800 chr2A 100666672 100667236 564 True 819.0 819 92.7940 2996 3562 1 chr2A.!!$R3 566
23 TraesCS5B01G318800 chr2A 544332456 544333294 838 False 464.0 464 77.1460 1607 2451 1 chr2A.!!$F2 844
24 TraesCS5B01G318800 chr2A 13067554 13068419 865 True 287.0 287 73.4900 1613 2478 1 chr2A.!!$R2 865
25 TraesCS5B01G318800 chr2A 448153809 448154600 791 False 268.0 268 73.4790 1676 2481 1 chr2A.!!$F1 805
26 TraesCS5B01G318800 chr4B 653529523 653530086 563 False 850.0 850 93.8380 2996 3562 1 chr4B.!!$F1 566
27 TraesCS5B01G318800 chr2B 578211851 578212414 563 True 850.0 850 93.8380 2996 3562 1 chr2B.!!$R3 566
28 TraesCS5B01G318800 chr2B 481899864 481900702 838 False 459.0 459 77.0570 1607 2451 1 chr2B.!!$F2 844
29 TraesCS5B01G318800 chr1A 376712895 376713462 567 False 813.0 813 92.4830 2993 3562 1 chr1A.!!$F1 569
30 TraesCS5B01G318800 chr2D 337923087 337924528 1441 False 503.0 503 73.6200 1019 2473 1 chr2D.!!$F1 1454
31 TraesCS5B01G318800 chr2D 406261413 406262251 838 False 459.0 459 77.0300 1607 2451 1 chr2D.!!$F2 844
32 TraesCS5B01G318800 chr6A 592817094 592817843 749 True 377.0 377 76.5310 1690 2451 1 chr6A.!!$R1 761
33 TraesCS5B01G318800 chr6B 612744627 612745129 502 True 305.0 305 77.7780 1013 1512 1 chr6B.!!$R1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1272 0.03601 AAGCTCCATCCACGAACCAG 60.036 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2979 3379 0.034089 CCTCCAGGACAATGGGGTTC 60.034 60.0 0.0 0.0 39.41 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.127118 CCTTTCTTGTGCGCTGCG 60.127 61.111 19.17 19.17 0.00 5.18
18 19 2.127118 CTTTCTTGTGCGCTGCGG 60.127 61.111 24.61 6.54 0.00 5.69
19 20 2.896801 CTTTCTTGTGCGCTGCGGT 61.897 57.895 24.61 0.00 0.00 5.68
20 21 3.179869 TTTCTTGTGCGCTGCGGTG 62.180 57.895 24.61 0.38 0.00 4.94
21 22 4.908687 TCTTGTGCGCTGCGGTGT 62.909 61.111 24.61 0.00 0.00 4.16
22 23 4.671549 CTTGTGCGCTGCGGTGTG 62.672 66.667 24.61 0.00 0.00 3.82
29 30 3.188786 GCTGCGGTGTGGACGATC 61.189 66.667 0.00 0.00 0.00 3.69
30 31 2.880879 CTGCGGTGTGGACGATCG 60.881 66.667 14.88 14.88 0.00 3.69
34 35 4.077184 GGTGTGGACGATCGCCCA 62.077 66.667 20.02 20.02 0.00 5.36
35 36 2.509336 GTGTGGACGATCGCCCAG 60.509 66.667 24.36 0.00 32.28 4.45
36 37 2.994995 TGTGGACGATCGCCCAGT 60.995 61.111 24.36 0.00 32.28 4.00
37 38 2.264794 GTGGACGATCGCCCAGTT 59.735 61.111 24.36 0.00 32.28 3.16
38 39 1.810030 GTGGACGATCGCCCAGTTC 60.810 63.158 24.36 8.63 32.28 3.01
39 40 1.982395 TGGACGATCGCCCAGTTCT 60.982 57.895 20.02 0.00 0.00 3.01
40 41 0.681887 TGGACGATCGCCCAGTTCTA 60.682 55.000 20.02 0.76 0.00 2.10
41 42 0.248949 GGACGATCGCCCAGTTCTAC 60.249 60.000 16.28 0.00 0.00 2.59
42 43 0.591741 GACGATCGCCCAGTTCTACG 60.592 60.000 16.60 0.00 0.00 3.51
43 44 1.944676 CGATCGCCCAGTTCTACGC 60.945 63.158 0.26 0.00 0.00 4.42
44 45 1.141019 GATCGCCCAGTTCTACGCA 59.859 57.895 0.00 0.00 0.00 5.24
45 46 1.146358 GATCGCCCAGTTCTACGCAC 61.146 60.000 0.00 0.00 0.00 5.34
46 47 2.884087 ATCGCCCAGTTCTACGCACG 62.884 60.000 0.00 0.00 0.00 5.34
47 48 2.813908 GCCCAGTTCTACGCACGG 60.814 66.667 0.00 0.00 0.00 4.94
48 49 2.967397 CCCAGTTCTACGCACGGA 59.033 61.111 0.00 0.00 0.00 4.69
49 50 1.153823 CCCAGTTCTACGCACGGAG 60.154 63.158 0.00 0.00 0.00 4.63
50 51 1.153823 CCAGTTCTACGCACGGAGG 60.154 63.158 1.81 0.00 0.00 4.30
51 52 1.585006 CAGTTCTACGCACGGAGGT 59.415 57.895 1.81 0.00 0.00 3.85
52 53 0.806868 CAGTTCTACGCACGGAGGTA 59.193 55.000 1.81 0.00 0.00 3.08
54 55 1.089920 GTTCTACGCACGGAGGTAGA 58.910 55.000 1.81 7.40 42.37 2.59
62 63 1.457831 ACGGAGGTAGAGGATGGCC 60.458 63.158 0.00 0.00 0.00 5.36
63 64 1.457643 CGGAGGTAGAGGATGGCCA 60.458 63.158 8.56 8.56 36.29 5.36
64 65 1.467678 CGGAGGTAGAGGATGGCCAG 61.468 65.000 13.05 0.00 36.29 4.85
67 68 1.899142 GAGGTAGAGGATGGCCAGATC 59.101 57.143 13.05 9.14 36.29 2.75
79 80 1.523258 CCAGATCTGGCTTGGCTCG 60.523 63.158 28.45 2.08 44.73 5.03
178 180 1.605058 ATCGCCCAGTTCTACGCACT 61.605 55.000 0.00 0.00 0.00 4.40
316 319 0.322098 TTGGTAGTGTTCGCATGGGG 60.322 55.000 10.21 0.00 0.00 4.96
385 388 2.657102 GAAGGCTCGGCTCCAGATGG 62.657 65.000 0.00 0.00 0.00 3.51
468 471 3.455910 CCTTGGAGGTATCATTGTGGAGA 59.544 47.826 0.00 0.00 0.00 3.71
469 472 4.080356 CCTTGGAGGTATCATTGTGGAGAA 60.080 45.833 0.00 0.00 0.00 2.87
474 477 5.184892 AGGTATCATTGTGGAGAAGCTTT 57.815 39.130 0.00 0.00 0.00 3.51
501 504 1.952102 TACCCAACGGCGTGAGATCC 61.952 60.000 15.70 0.00 0.00 3.36
519 522 0.323087 CCCCGGGTGAAAACCTAAGG 60.323 60.000 21.85 0.00 0.00 2.69
543 546 0.107312 GCAGTGCCAGATCAGGTGAT 60.107 55.000 2.85 0.00 37.51 3.06
558 561 1.453155 GTGATGGCGGTGTTCTCAAT 58.547 50.000 0.00 0.00 0.00 2.57
686 692 8.341903 CCCTTTTTATTTCGTTTCTTTTTGCAT 58.658 29.630 0.00 0.00 0.00 3.96
712 720 5.447624 TTTTTCGGTGATTTCCTCCTTTC 57.552 39.130 0.00 0.00 0.00 2.62
744 752 7.939039 TCTTGTAACACCTTCTTCTGATCAATT 59.061 33.333 0.00 0.00 0.00 2.32
745 753 8.463930 TTGTAACACCTTCTTCTGATCAATTT 57.536 30.769 0.00 0.00 0.00 1.82
746 754 7.874940 TGTAACACCTTCTTCTGATCAATTTG 58.125 34.615 0.00 0.00 0.00 2.32
747 755 5.972107 ACACCTTCTTCTGATCAATTTGG 57.028 39.130 0.00 0.00 0.00 3.28
748 756 4.219288 ACACCTTCTTCTGATCAATTTGGC 59.781 41.667 0.00 0.00 0.00 4.52
749 757 4.219070 CACCTTCTTCTGATCAATTTGGCA 59.781 41.667 0.00 0.00 0.00 4.92
750 758 4.461781 ACCTTCTTCTGATCAATTTGGCAG 59.538 41.667 0.00 11.54 0.00 4.85
751 759 4.461781 CCTTCTTCTGATCAATTTGGCAGT 59.538 41.667 15.14 0.00 0.00 4.40
752 760 5.047519 CCTTCTTCTGATCAATTTGGCAGTT 60.048 40.000 15.14 0.00 0.00 3.16
753 761 5.633830 TCTTCTGATCAATTTGGCAGTTC 57.366 39.130 15.14 1.13 0.00 3.01
754 762 5.319453 TCTTCTGATCAATTTGGCAGTTCT 58.681 37.500 15.14 0.00 0.00 3.01
755 763 5.413833 TCTTCTGATCAATTTGGCAGTTCTC 59.586 40.000 15.14 0.00 0.00 2.87
756 764 4.914983 TCTGATCAATTTGGCAGTTCTCT 58.085 39.130 15.14 0.00 0.00 3.10
757 765 5.319453 TCTGATCAATTTGGCAGTTCTCTT 58.681 37.500 15.14 0.00 0.00 2.85
758 766 6.475504 TCTGATCAATTTGGCAGTTCTCTTA 58.524 36.000 15.14 0.00 0.00 2.10
759 767 6.372659 TCTGATCAATTTGGCAGTTCTCTTAC 59.627 38.462 15.14 0.00 0.00 2.34
760 768 5.415701 TGATCAATTTGGCAGTTCTCTTACC 59.584 40.000 0.00 0.00 0.00 2.85
761 769 4.724399 TCAATTTGGCAGTTCTCTTACCA 58.276 39.130 0.00 0.00 0.00 3.25
762 770 5.136828 TCAATTTGGCAGTTCTCTTACCAA 58.863 37.500 0.00 0.00 36.27 3.67
763 771 5.009610 TCAATTTGGCAGTTCTCTTACCAAC 59.990 40.000 0.00 0.00 37.18 3.77
764 772 3.569194 TTGGCAGTTCTCTTACCAACA 57.431 42.857 0.00 0.00 34.40 3.33
765 773 3.788227 TGGCAGTTCTCTTACCAACAT 57.212 42.857 0.00 0.00 0.00 2.71
766 774 4.098914 TGGCAGTTCTCTTACCAACATT 57.901 40.909 0.00 0.00 0.00 2.71
767 775 5.235850 TGGCAGTTCTCTTACCAACATTA 57.764 39.130 0.00 0.00 0.00 1.90
768 776 5.626142 TGGCAGTTCTCTTACCAACATTAA 58.374 37.500 0.00 0.00 0.00 1.40
769 777 6.065374 TGGCAGTTCTCTTACCAACATTAAA 58.935 36.000 0.00 0.00 0.00 1.52
770 778 6.547880 TGGCAGTTCTCTTACCAACATTAAAA 59.452 34.615 0.00 0.00 0.00 1.52
771 779 7.068839 TGGCAGTTCTCTTACCAACATTAAAAA 59.931 33.333 0.00 0.00 0.00 1.94
942 1232 2.943033 CCGCTGGGTTTCTTATTCGATT 59.057 45.455 0.00 0.00 0.00 3.34
943 1233 3.377172 CCGCTGGGTTTCTTATTCGATTT 59.623 43.478 0.00 0.00 0.00 2.17
944 1234 4.142469 CCGCTGGGTTTCTTATTCGATTTT 60.142 41.667 0.00 0.00 0.00 1.82
945 1235 5.028375 CGCTGGGTTTCTTATTCGATTTTC 58.972 41.667 0.00 0.00 0.00 2.29
946 1236 5.028375 GCTGGGTTTCTTATTCGATTTTCG 58.972 41.667 0.00 0.00 42.10 3.46
982 1272 0.036010 AAGCTCCATCCACGAACCAG 60.036 55.000 0.00 0.00 0.00 4.00
1009 1299 1.764723 CACTGCTAGACATGGATCCCA 59.235 52.381 9.90 0.00 38.19 4.37
1517 1830 0.553333 ATTCCCCTCAAAGGCTAGCC 59.447 55.000 27.19 27.19 32.73 3.93
1528 1841 4.165950 TCAAAGGCTAGCCATGAATTCCTA 59.834 41.667 34.70 12.60 38.92 2.94
1534 1847 5.182760 GGCTAGCCATGAATTCCTAATCTTG 59.817 44.000 29.33 0.00 35.81 3.02
1901 2290 1.223487 CGACCAAATCATCCCCCGT 59.777 57.895 0.00 0.00 0.00 5.28
1980 2372 3.760035 GGCTCGACGGCAAGAGGA 61.760 66.667 9.90 0.00 38.25 3.71
2498 2896 4.408821 GCTGTCCGGTCCATGGCA 62.409 66.667 6.96 0.00 0.00 4.92
2588 2988 0.320421 TTTCTTTCCAGCTCGGTCGG 60.320 55.000 2.68 0.00 35.57 4.79
2606 3006 1.648467 GGCCACTGATCGAGCAAACC 61.648 60.000 4.32 0.00 0.00 3.27
2607 3007 0.674895 GCCACTGATCGAGCAAACCT 60.675 55.000 4.32 0.00 0.00 3.50
2608 3008 1.405526 GCCACTGATCGAGCAAACCTA 60.406 52.381 4.32 0.00 0.00 3.08
2609 3009 2.743183 GCCACTGATCGAGCAAACCTAT 60.743 50.000 4.32 0.00 0.00 2.57
2610 3010 2.868583 CCACTGATCGAGCAAACCTATG 59.131 50.000 4.32 0.00 0.00 2.23
2611 3011 2.286294 CACTGATCGAGCAAACCTATGC 59.714 50.000 4.32 0.00 46.78 3.14
2620 3020 2.539476 GCAAACCTATGCATTTTCGGG 58.461 47.619 3.54 2.76 45.70 5.14
2621 3021 2.094234 GCAAACCTATGCATTTTCGGGT 60.094 45.455 3.54 3.41 45.70 5.28
2622 3022 3.616317 GCAAACCTATGCATTTTCGGGTT 60.616 43.478 3.54 9.37 45.70 4.11
2623 3023 3.866883 AACCTATGCATTTTCGGGTTG 57.133 42.857 3.54 0.00 35.98 3.77
2624 3024 2.099405 ACCTATGCATTTTCGGGTTGG 58.901 47.619 3.54 0.00 0.00 3.77
2625 3025 1.408702 CCTATGCATTTTCGGGTTGGG 59.591 52.381 3.54 0.00 0.00 4.12
2626 3026 1.408702 CTATGCATTTTCGGGTTGGGG 59.591 52.381 3.54 0.00 0.00 4.96
2627 3027 0.252012 ATGCATTTTCGGGTTGGGGA 60.252 50.000 0.00 0.00 0.00 4.81
2628 3028 1.182385 TGCATTTTCGGGTTGGGGAC 61.182 55.000 0.00 0.00 0.00 4.46
2629 3029 0.898326 GCATTTTCGGGTTGGGGACT 60.898 55.000 0.00 0.00 0.00 3.85
2630 3030 1.173913 CATTTTCGGGTTGGGGACTC 58.826 55.000 0.00 0.00 0.00 3.36
2631 3031 1.073098 ATTTTCGGGTTGGGGACTCT 58.927 50.000 0.00 0.00 0.00 3.24
2632 3032 0.399075 TTTTCGGGTTGGGGACTCTC 59.601 55.000 0.00 0.00 0.00 3.20
2633 3033 1.823169 TTTCGGGTTGGGGACTCTCG 61.823 60.000 0.00 0.00 0.00 4.04
2634 3034 3.771160 CGGGTTGGGGACTCTCGG 61.771 72.222 0.00 0.00 0.00 4.63
2635 3035 2.606826 GGGTTGGGGACTCTCGGT 60.607 66.667 0.00 0.00 0.00 4.69
2636 3036 2.222013 GGGTTGGGGACTCTCGGTT 61.222 63.158 0.00 0.00 0.00 4.44
2637 3037 1.003718 GGTTGGGGACTCTCGGTTG 60.004 63.158 0.00 0.00 0.00 3.77
2638 3038 1.477685 GGTTGGGGACTCTCGGTTGA 61.478 60.000 0.00 0.00 0.00 3.18
2639 3039 0.395312 GTTGGGGACTCTCGGTTGAA 59.605 55.000 0.00 0.00 0.00 2.69
2640 3040 1.133363 TTGGGGACTCTCGGTTGAAA 58.867 50.000 0.00 0.00 0.00 2.69
2641 3041 1.133363 TGGGGACTCTCGGTTGAAAA 58.867 50.000 0.00 0.00 0.00 2.29
2642 3042 1.491332 TGGGGACTCTCGGTTGAAAAA 59.509 47.619 0.00 0.00 0.00 1.94
2643 3043 2.107552 TGGGGACTCTCGGTTGAAAAAT 59.892 45.455 0.00 0.00 0.00 1.82
2644 3044 3.328343 TGGGGACTCTCGGTTGAAAAATA 59.672 43.478 0.00 0.00 0.00 1.40
2645 3045 3.939592 GGGGACTCTCGGTTGAAAAATAG 59.060 47.826 0.00 0.00 0.00 1.73
2646 3046 4.323257 GGGGACTCTCGGTTGAAAAATAGA 60.323 45.833 0.00 0.00 0.00 1.98
2647 3047 5.243207 GGGACTCTCGGTTGAAAAATAGAA 58.757 41.667 0.00 0.00 0.00 2.10
2648 3048 5.704053 GGGACTCTCGGTTGAAAAATAGAAA 59.296 40.000 0.00 0.00 0.00 2.52
2649 3049 6.206048 GGGACTCTCGGTTGAAAAATAGAAAA 59.794 38.462 0.00 0.00 0.00 2.29
2650 3050 7.255346 GGGACTCTCGGTTGAAAAATAGAAAAA 60.255 37.037 0.00 0.00 0.00 1.94
2651 3051 8.297426 GGACTCTCGGTTGAAAAATAGAAAAAT 58.703 33.333 0.00 0.00 0.00 1.82
2666 3066 9.869757 AAATAGAAAAATACTGAAATTTCCGGG 57.130 29.630 15.48 8.25 33.35 5.73
2667 3067 6.911250 AGAAAAATACTGAAATTTCCGGGT 57.089 33.333 15.48 13.05 33.35 5.28
2668 3068 9.689501 ATAGAAAAATACTGAAATTTCCGGGTA 57.310 29.630 15.48 14.56 33.35 3.69
2669 3069 8.589701 AGAAAAATACTGAAATTTCCGGGTAT 57.410 30.769 15.48 15.88 33.35 2.73
2670 3070 9.031537 AGAAAAATACTGAAATTTCCGGGTATT 57.968 29.630 21.89 21.89 33.35 1.89
2676 3076 9.862149 ATACTGAAATTTCCGGGTATTAATTCT 57.138 29.630 15.48 0.00 0.00 2.40
2678 3078 9.117183 ACTGAAATTTCCGGGTATTAATTCTAC 57.883 33.333 15.48 0.00 0.00 2.59
2679 3079 9.338622 CTGAAATTTCCGGGTATTAATTCTACT 57.661 33.333 15.48 0.00 0.00 2.57
2680 3080 9.333724 TGAAATTTCCGGGTATTAATTCTACTC 57.666 33.333 15.48 0.00 0.00 2.59
2681 3081 9.557061 GAAATTTCCGGGTATTAATTCTACTCT 57.443 33.333 6.95 0.00 0.00 3.24
2682 3082 9.557061 AAATTTCCGGGTATTAATTCTACTCTC 57.443 33.333 0.00 0.00 0.00 3.20
2683 3083 5.954296 TCCGGGTATTAATTCTACTCTCG 57.046 43.478 0.00 0.00 0.00 4.04
2684 3084 5.380043 TCCGGGTATTAATTCTACTCTCGT 58.620 41.667 0.00 0.00 0.00 4.18
2685 3085 5.471456 TCCGGGTATTAATTCTACTCTCGTC 59.529 44.000 0.00 0.00 0.00 4.20
2686 3086 5.472820 CCGGGTATTAATTCTACTCTCGTCT 59.527 44.000 0.00 0.00 0.00 4.18
2687 3087 6.372185 CGGGTATTAATTCTACTCTCGTCTG 58.628 44.000 0.00 0.00 0.00 3.51
2688 3088 6.204301 CGGGTATTAATTCTACTCTCGTCTGA 59.796 42.308 0.00 0.00 0.00 3.27
2689 3089 7.255035 CGGGTATTAATTCTACTCTCGTCTGAA 60.255 40.741 0.00 0.00 0.00 3.02
2690 3090 8.077386 GGGTATTAATTCTACTCTCGTCTGAAG 58.923 40.741 0.00 0.00 0.00 3.02
2691 3091 8.623030 GGTATTAATTCTACTCTCGTCTGAAGT 58.377 37.037 0.00 0.00 0.00 3.01
2694 3094 8.967552 TTAATTCTACTCTCGTCTGAAGTTTC 57.032 34.615 0.00 0.00 0.00 2.78
2695 3095 6.576662 ATTCTACTCTCGTCTGAAGTTTCA 57.423 37.500 0.00 0.00 35.57 2.69
2696 3096 6.576662 TTCTACTCTCGTCTGAAGTTTCAT 57.423 37.500 0.00 0.00 36.46 2.57
2697 3097 5.944013 TCTACTCTCGTCTGAAGTTTCATG 58.056 41.667 0.00 0.00 36.46 3.07
2698 3098 4.855715 ACTCTCGTCTGAAGTTTCATGA 57.144 40.909 0.00 0.00 36.46 3.07
2699 3099 5.201713 ACTCTCGTCTGAAGTTTCATGAA 57.798 39.130 3.38 3.38 36.46 2.57
2700 3100 5.601662 ACTCTCGTCTGAAGTTTCATGAAA 58.398 37.500 16.91 16.91 36.46 2.69
2701 3101 6.049149 ACTCTCGTCTGAAGTTTCATGAAAA 58.951 36.000 22.07 6.30 36.46 2.29
2702 3102 6.538742 ACTCTCGTCTGAAGTTTCATGAAAAA 59.461 34.615 22.07 7.97 36.46 1.94
2725 3125 8.443953 AAAATGACATTAGAGGTATTCTCAGC 57.556 34.615 0.00 0.00 44.81 4.26
2726 3126 6.737720 ATGACATTAGAGGTATTCTCAGCA 57.262 37.500 0.00 0.00 44.81 4.41
2727 3127 6.544928 TGACATTAGAGGTATTCTCAGCAA 57.455 37.500 0.00 0.00 44.81 3.91
2728 3128 6.946340 TGACATTAGAGGTATTCTCAGCAAA 58.054 36.000 0.00 0.00 44.81 3.68
2729 3129 7.394016 TGACATTAGAGGTATTCTCAGCAAAA 58.606 34.615 0.00 0.00 44.81 2.44
2730 3130 7.882791 TGACATTAGAGGTATTCTCAGCAAAAA 59.117 33.333 0.00 0.00 44.81 1.94
2731 3131 8.273780 ACATTAGAGGTATTCTCAGCAAAAAG 57.726 34.615 0.00 0.00 44.81 2.27
2732 3132 7.337942 ACATTAGAGGTATTCTCAGCAAAAAGG 59.662 37.037 0.00 0.00 44.81 3.11
2733 3133 5.505181 AGAGGTATTCTCAGCAAAAAGGA 57.495 39.130 0.00 0.00 44.81 3.36
2734 3134 5.249420 AGAGGTATTCTCAGCAAAAAGGAC 58.751 41.667 0.00 0.00 44.81 3.85
2735 3135 4.985538 AGGTATTCTCAGCAAAAAGGACA 58.014 39.130 0.00 0.00 0.00 4.02
2736 3136 5.385198 AGGTATTCTCAGCAAAAAGGACAA 58.615 37.500 0.00 0.00 0.00 3.18
2737 3137 6.012745 AGGTATTCTCAGCAAAAAGGACAAT 58.987 36.000 0.00 0.00 0.00 2.71
2738 3138 7.175104 AGGTATTCTCAGCAAAAAGGACAATA 58.825 34.615 0.00 0.00 0.00 1.90
2739 3139 7.121315 AGGTATTCTCAGCAAAAAGGACAATAC 59.879 37.037 0.00 0.00 0.00 1.89
2740 3140 6.899393 ATTCTCAGCAAAAAGGACAATACA 57.101 33.333 0.00 0.00 0.00 2.29
2741 3141 6.707440 TTCTCAGCAAAAAGGACAATACAA 57.293 33.333 0.00 0.00 0.00 2.41
2742 3142 6.899393 TCTCAGCAAAAAGGACAATACAAT 57.101 33.333 0.00 0.00 0.00 2.71
2743 3143 6.913170 TCTCAGCAAAAAGGACAATACAATC 58.087 36.000 0.00 0.00 0.00 2.67
2744 3144 5.698832 TCAGCAAAAAGGACAATACAATCG 58.301 37.500 0.00 0.00 0.00 3.34
2745 3145 5.471797 TCAGCAAAAAGGACAATACAATCGA 59.528 36.000 0.00 0.00 0.00 3.59
2746 3146 6.150976 TCAGCAAAAAGGACAATACAATCGAT 59.849 34.615 0.00 0.00 0.00 3.59
2747 3147 6.808212 CAGCAAAAAGGACAATACAATCGATT 59.192 34.615 4.39 4.39 0.00 3.34
2748 3148 7.967854 CAGCAAAAAGGACAATACAATCGATTA 59.032 33.333 10.97 0.00 0.00 1.75
2749 3149 8.686334 AGCAAAAAGGACAATACAATCGATTAT 58.314 29.630 10.97 1.29 0.00 1.28
2750 3150 9.944663 GCAAAAAGGACAATACAATCGATTATA 57.055 29.630 10.97 4.12 0.00 0.98
2783 3183 9.635404 AATTGTTTAAATGGATTATAGGTCGGA 57.365 29.630 0.00 0.00 0.00 4.55
2784 3184 8.441312 TTGTTTAAATGGATTATAGGTCGGAC 57.559 34.615 0.00 0.00 0.00 4.79
2785 3185 6.993902 TGTTTAAATGGATTATAGGTCGGACC 59.006 38.462 19.61 19.61 38.99 4.46
2786 3186 3.955650 AATGGATTATAGGTCGGACCG 57.044 47.619 20.87 7.84 44.90 4.79
2787 3187 2.369983 TGGATTATAGGTCGGACCGT 57.630 50.000 20.87 15.86 44.90 4.83
2788 3188 3.507162 TGGATTATAGGTCGGACCGTA 57.493 47.619 20.87 14.89 44.90 4.02
2789 3189 4.038271 TGGATTATAGGTCGGACCGTAT 57.962 45.455 20.87 18.77 44.90 3.06
2790 3190 4.410099 TGGATTATAGGTCGGACCGTATT 58.590 43.478 20.87 13.65 44.90 1.89
2791 3191 4.834496 TGGATTATAGGTCGGACCGTATTT 59.166 41.667 20.87 6.33 44.90 1.40
2792 3192 5.305128 TGGATTATAGGTCGGACCGTATTTT 59.695 40.000 20.87 5.60 44.90 1.82
2793 3193 5.866092 GGATTATAGGTCGGACCGTATTTTC 59.134 44.000 20.87 14.01 44.90 2.29
2794 3194 6.294955 GGATTATAGGTCGGACCGTATTTTCT 60.295 42.308 20.87 4.13 44.90 2.52
2795 3195 6.469782 TTATAGGTCGGACCGTATTTTCTT 57.530 37.500 20.87 3.41 44.90 2.52
2796 3196 3.242549 AGGTCGGACCGTATTTTCTTC 57.757 47.619 20.87 0.00 44.90 2.87
2797 3197 2.564062 AGGTCGGACCGTATTTTCTTCA 59.436 45.455 20.87 0.00 44.90 3.02
2798 3198 2.669924 GGTCGGACCGTATTTTCTTCAC 59.330 50.000 14.79 0.00 0.00 3.18
2799 3199 3.582780 GTCGGACCGTATTTTCTTCACT 58.417 45.455 14.79 0.00 0.00 3.41
2800 3200 4.380867 GGTCGGACCGTATTTTCTTCACTA 60.381 45.833 14.79 0.00 0.00 2.74
2801 3201 5.163513 GTCGGACCGTATTTTCTTCACTAA 58.836 41.667 14.79 0.00 0.00 2.24
2802 3202 5.634859 GTCGGACCGTATTTTCTTCACTAAA 59.365 40.000 14.79 0.00 0.00 1.85
2803 3203 6.146021 GTCGGACCGTATTTTCTTCACTAAAA 59.854 38.462 14.79 0.00 0.00 1.52
2804 3204 6.705381 TCGGACCGTATTTTCTTCACTAAAAA 59.295 34.615 14.79 0.00 30.20 1.94
2805 3205 7.388500 TCGGACCGTATTTTCTTCACTAAAAAT 59.612 33.333 14.79 0.00 38.34 1.82
2806 3206 8.658609 CGGACCGTATTTTCTTCACTAAAAATA 58.341 33.333 5.48 0.00 36.66 1.40
2816 3216 7.225523 TCTTCACTAAAAATATTACGGACGC 57.774 36.000 0.00 0.00 0.00 5.19
2817 3217 5.971895 TCACTAAAAATATTACGGACGCC 57.028 39.130 0.00 0.00 0.00 5.68
2818 3218 5.417811 TCACTAAAAATATTACGGACGCCA 58.582 37.500 0.00 0.00 0.00 5.69
2819 3219 6.050432 TCACTAAAAATATTACGGACGCCAT 58.950 36.000 0.00 0.00 0.00 4.40
2820 3220 6.539464 TCACTAAAAATATTACGGACGCCATT 59.461 34.615 0.00 0.00 0.00 3.16
2821 3221 7.066043 TCACTAAAAATATTACGGACGCCATTT 59.934 33.333 0.00 0.00 0.00 2.32
2822 3222 7.698970 CACTAAAAATATTACGGACGCCATTTT 59.301 33.333 0.00 0.00 0.00 1.82
2823 3223 8.245491 ACTAAAAATATTACGGACGCCATTTTT 58.755 29.630 15.93 15.93 38.45 1.94
2843 3243 5.481200 TTTTCACAAAATTCCGTACGTGA 57.519 34.783 15.21 8.40 0.00 4.35
2844 3244 5.676532 TTTCACAAAATTCCGTACGTGAT 57.323 34.783 15.21 4.65 33.72 3.06
2845 3245 6.782298 TTTCACAAAATTCCGTACGTGATA 57.218 33.333 15.21 1.22 33.72 2.15
2846 3246 6.782298 TTCACAAAATTCCGTACGTGATAA 57.218 33.333 15.21 3.41 33.72 1.75
2847 3247 6.782298 TCACAAAATTCCGTACGTGATAAA 57.218 33.333 15.21 0.93 0.00 1.40
2848 3248 7.187244 TCACAAAATTCCGTACGTGATAAAA 57.813 32.000 15.21 0.00 0.00 1.52
2849 3249 7.808672 TCACAAAATTCCGTACGTGATAAAAT 58.191 30.769 15.21 1.56 0.00 1.82
2850 3250 7.746916 TCACAAAATTCCGTACGTGATAAAATG 59.253 33.333 15.21 6.14 0.00 2.32
2851 3251 7.007905 CACAAAATTCCGTACGTGATAAAATGG 59.992 37.037 15.21 0.00 0.00 3.16
2852 3252 6.988622 AAATTCCGTACGTGATAAAATGGA 57.011 33.333 15.21 0.00 0.00 3.41
2853 3253 5.978934 ATTCCGTACGTGATAAAATGGAC 57.021 39.130 15.21 0.00 0.00 4.02
2854 3254 4.453177 TCCGTACGTGATAAAATGGACA 57.547 40.909 15.21 0.00 0.00 4.02
2855 3255 4.818642 TCCGTACGTGATAAAATGGACAA 58.181 39.130 15.21 0.00 0.00 3.18
2856 3256 4.626604 TCCGTACGTGATAAAATGGACAAC 59.373 41.667 15.21 0.00 0.00 3.32
2857 3257 4.201744 CCGTACGTGATAAAATGGACAACC 60.202 45.833 15.21 0.00 0.00 3.77
2869 3269 2.841215 TGGACAACCACGTTTAAGAGG 58.159 47.619 0.00 0.00 41.77 3.69
2870 3270 2.435069 TGGACAACCACGTTTAAGAGGA 59.565 45.455 0.00 0.00 41.77 3.71
2871 3271 3.118334 TGGACAACCACGTTTAAGAGGAA 60.118 43.478 0.00 0.00 41.77 3.36
2872 3272 3.497262 GGACAACCACGTTTAAGAGGAAG 59.503 47.826 0.00 0.00 35.97 3.46
2873 3273 2.876550 ACAACCACGTTTAAGAGGAAGC 59.123 45.455 0.00 0.00 0.00 3.86
2874 3274 2.875933 CAACCACGTTTAAGAGGAAGCA 59.124 45.455 0.00 0.00 0.00 3.91
2875 3275 3.418684 ACCACGTTTAAGAGGAAGCAT 57.581 42.857 0.00 0.00 0.00 3.79
2876 3276 3.074412 ACCACGTTTAAGAGGAAGCATG 58.926 45.455 0.00 0.00 0.00 4.06
2877 3277 3.074412 CCACGTTTAAGAGGAAGCATGT 58.926 45.455 0.00 0.00 0.00 3.21
2878 3278 3.502211 CCACGTTTAAGAGGAAGCATGTT 59.498 43.478 0.00 0.00 0.00 2.71
2879 3279 4.693566 CCACGTTTAAGAGGAAGCATGTTA 59.306 41.667 0.00 0.00 0.00 2.41
2880 3280 5.180492 CCACGTTTAAGAGGAAGCATGTTAA 59.820 40.000 0.00 0.00 0.00 2.01
2881 3281 6.293735 CCACGTTTAAGAGGAAGCATGTTAAA 60.294 38.462 0.00 0.00 0.00 1.52
2882 3282 7.136119 CACGTTTAAGAGGAAGCATGTTAAAA 58.864 34.615 0.00 0.00 30.18 1.52
2883 3283 7.646130 CACGTTTAAGAGGAAGCATGTTAAAAA 59.354 33.333 0.00 0.00 30.18 1.94
2910 3310 9.536510 ACCTTTTAATTTACTATTTAGGGTGCA 57.463 29.630 0.00 0.00 0.00 4.57
2914 3314 6.405278 AATTTACTATTTAGGGTGCATGGC 57.595 37.500 0.00 0.00 0.00 4.40
2915 3315 4.511786 TTACTATTTAGGGTGCATGGCA 57.488 40.909 0.00 0.00 35.60 4.92
2916 3316 3.600448 ACTATTTAGGGTGCATGGCAT 57.400 42.857 0.00 0.00 41.91 4.40
2917 3317 3.490348 ACTATTTAGGGTGCATGGCATC 58.510 45.455 0.00 0.00 41.91 3.91
2922 3322 3.602103 GGTGCATGGCATCCGAAA 58.398 55.556 0.00 0.00 41.91 3.46
2923 3323 1.434696 GGTGCATGGCATCCGAAAG 59.565 57.895 0.00 0.00 41.91 2.62
2924 3324 1.031571 GGTGCATGGCATCCGAAAGA 61.032 55.000 0.00 0.00 41.91 2.52
2925 3325 1.027357 GTGCATGGCATCCGAAAGAT 58.973 50.000 0.00 0.00 41.91 2.40
2935 3335 3.450578 CATCCGAAAGATGCATTTTGGG 58.549 45.455 19.65 19.65 45.76 4.12
2936 3336 1.824230 TCCGAAAGATGCATTTTGGGG 59.176 47.619 22.54 17.67 42.06 4.96
2937 3337 1.643880 CGAAAGATGCATTTTGGGGC 58.356 50.000 0.00 0.00 0.00 5.80
2938 3338 1.205417 CGAAAGATGCATTTTGGGGCT 59.795 47.619 0.00 0.00 0.00 5.19
2939 3339 2.624636 GAAAGATGCATTTTGGGGCTG 58.375 47.619 0.00 0.00 0.00 4.85
2940 3340 0.251073 AAGATGCATTTTGGGGCTGC 59.749 50.000 0.00 0.00 36.45 5.25
2941 3341 0.616679 AGATGCATTTTGGGGCTGCT 60.617 50.000 0.00 0.00 36.84 4.24
2942 3342 1.113788 GATGCATTTTGGGGCTGCTA 58.886 50.000 0.00 0.00 36.84 3.49
2943 3343 1.481772 GATGCATTTTGGGGCTGCTAA 59.518 47.619 0.00 0.00 36.84 3.09
2944 3344 0.607620 TGCATTTTGGGGCTGCTAAC 59.392 50.000 0.00 0.00 36.84 2.34
2945 3345 0.607620 GCATTTTGGGGCTGCTAACA 59.392 50.000 0.00 0.00 33.15 2.41
2946 3346 1.207811 GCATTTTGGGGCTGCTAACAT 59.792 47.619 0.00 0.00 33.15 2.71
2947 3347 2.430332 GCATTTTGGGGCTGCTAACATA 59.570 45.455 0.00 0.00 33.15 2.29
2948 3348 3.070015 GCATTTTGGGGCTGCTAACATAT 59.930 43.478 0.00 0.00 33.15 1.78
2949 3349 4.624015 CATTTTGGGGCTGCTAACATATG 58.376 43.478 0.00 0.00 0.00 1.78
2950 3350 3.380471 TTTGGGGCTGCTAACATATGT 57.620 42.857 1.41 1.41 0.00 2.29
2951 3351 4.511786 TTTGGGGCTGCTAACATATGTA 57.488 40.909 9.21 0.00 0.00 2.29
2952 3352 4.722526 TTGGGGCTGCTAACATATGTAT 57.277 40.909 9.21 2.47 0.00 2.29
2953 3353 4.019792 TGGGGCTGCTAACATATGTATG 57.980 45.455 9.21 6.23 39.55 2.39
2954 3354 3.244875 TGGGGCTGCTAACATATGTATGG 60.245 47.826 9.21 3.72 38.00 2.74
2955 3355 3.009033 GGGGCTGCTAACATATGTATGGA 59.991 47.826 9.21 5.49 38.00 3.41
2956 3356 4.324563 GGGGCTGCTAACATATGTATGGAT 60.325 45.833 9.21 0.00 38.00 3.41
2957 3357 4.637534 GGGCTGCTAACATATGTATGGATG 59.362 45.833 9.21 0.03 38.00 3.51
2958 3358 5.248640 GGCTGCTAACATATGTATGGATGT 58.751 41.667 9.21 0.00 37.91 3.06
2959 3359 6.406370 GGCTGCTAACATATGTATGGATGTA 58.594 40.000 9.21 0.00 35.21 2.29
2960 3360 7.050377 GGCTGCTAACATATGTATGGATGTAT 58.950 38.462 9.21 0.00 35.21 2.29
2961 3361 7.554118 GGCTGCTAACATATGTATGGATGTATT 59.446 37.037 9.21 0.00 35.21 1.89
2962 3362 8.393366 GCTGCTAACATATGTATGGATGTATTG 58.607 37.037 9.21 0.00 35.21 1.90
2963 3363 9.440773 CTGCTAACATATGTATGGATGTATTGT 57.559 33.333 9.21 0.00 35.21 2.71
2972 3372 7.597288 TGTATGGATGTATTGTACTAGCTGT 57.403 36.000 0.00 0.00 0.00 4.40
2973 3373 8.018537 TGTATGGATGTATTGTACTAGCTGTT 57.981 34.615 0.00 0.00 0.00 3.16
2974 3374 7.926018 TGTATGGATGTATTGTACTAGCTGTTG 59.074 37.037 0.00 0.00 0.00 3.33
2975 3375 6.294361 TGGATGTATTGTACTAGCTGTTGT 57.706 37.500 0.00 0.00 0.00 3.32
2976 3376 7.412853 TGGATGTATTGTACTAGCTGTTGTA 57.587 36.000 0.00 0.00 0.00 2.41
2977 3377 7.489160 TGGATGTATTGTACTAGCTGTTGTAG 58.511 38.462 0.00 0.00 0.00 2.74
2985 3385 3.574780 GCTGTTGTAGCGAACCCC 58.425 61.111 0.00 0.00 43.63 4.95
2986 3386 1.302192 GCTGTTGTAGCGAACCCCA 60.302 57.895 0.00 0.00 43.63 4.96
2987 3387 0.676782 GCTGTTGTAGCGAACCCCAT 60.677 55.000 0.00 0.00 43.63 4.00
2988 3388 1.821216 CTGTTGTAGCGAACCCCATT 58.179 50.000 0.00 0.00 0.00 3.16
2989 3389 1.468520 CTGTTGTAGCGAACCCCATTG 59.531 52.381 0.00 0.00 0.00 2.82
2990 3390 1.202830 TGTTGTAGCGAACCCCATTGT 60.203 47.619 0.00 0.00 0.00 2.71
2991 3391 1.467342 GTTGTAGCGAACCCCATTGTC 59.533 52.381 0.00 0.00 0.00 3.18
2992 3392 0.035820 TGTAGCGAACCCCATTGTCC 60.036 55.000 0.00 0.00 0.00 4.02
3110 3510 3.010584 ACCCAATGTGCAAATCTAGTCCT 59.989 43.478 0.00 0.00 0.00 3.85
3241 3641 5.639082 GCACTTTTCACCTGAATTTATTGGG 59.361 40.000 0.00 0.00 33.54 4.12
3504 3906 2.273912 ACCCTCTCGGTCGGTGTTC 61.274 63.158 0.00 0.00 43.58 3.18
3507 3909 1.507174 CTCTCGGTCGGTGTTCTCC 59.493 63.158 0.00 0.00 0.00 3.71
3541 3943 1.335051 GCCCAGTTTTGAGCTCGTTTC 60.335 52.381 9.64 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.671549 CACACCGCAGCGCACAAG 62.672 66.667 11.47 0.00 0.00 3.16
12 13 3.188786 GATCGTCCACACCGCAGC 61.189 66.667 0.00 0.00 0.00 5.25
13 14 2.880879 CGATCGTCCACACCGCAG 60.881 66.667 7.03 0.00 0.00 5.18
17 18 4.077184 TGGGCGATCGTCCACACC 62.077 66.667 36.39 17.47 46.04 4.16
18 19 2.509336 CTGGGCGATCGTCCACAC 60.509 66.667 36.39 12.16 46.04 3.82
19 20 2.501223 GAACTGGGCGATCGTCCACA 62.501 60.000 36.39 17.96 46.04 4.17
20 21 1.810030 GAACTGGGCGATCGTCCAC 60.810 63.158 36.39 23.42 46.04 4.02
22 23 0.248949 GTAGAACTGGGCGATCGTCC 60.249 60.000 31.57 31.57 41.01 4.79
23 24 0.591741 CGTAGAACTGGGCGATCGTC 60.592 60.000 17.81 15.20 0.00 4.20
24 25 1.432251 CGTAGAACTGGGCGATCGT 59.568 57.895 17.81 0.00 0.00 3.73
25 26 1.944676 GCGTAGAACTGGGCGATCG 60.945 63.158 11.69 11.69 0.00 3.69
26 27 1.141019 TGCGTAGAACTGGGCGATC 59.859 57.895 0.00 0.00 0.00 3.69
27 28 1.153628 GTGCGTAGAACTGGGCGAT 60.154 57.895 0.00 0.00 0.00 4.58
28 29 2.260434 GTGCGTAGAACTGGGCGA 59.740 61.111 0.00 0.00 0.00 5.54
29 30 3.179265 CGTGCGTAGAACTGGGCG 61.179 66.667 0.00 0.00 0.00 6.13
30 31 2.813908 CCGTGCGTAGAACTGGGC 60.814 66.667 0.00 0.00 0.00 5.36
31 32 1.153823 CTCCGTGCGTAGAACTGGG 60.154 63.158 0.00 0.00 0.00 4.45
32 33 1.153823 CCTCCGTGCGTAGAACTGG 60.154 63.158 0.00 0.00 0.00 4.00
33 34 0.806868 TACCTCCGTGCGTAGAACTG 59.193 55.000 0.00 0.00 0.00 3.16
34 35 1.093159 CTACCTCCGTGCGTAGAACT 58.907 55.000 0.00 0.00 35.03 3.01
35 36 1.063764 CTCTACCTCCGTGCGTAGAAC 59.936 57.143 0.00 0.00 40.23 3.01
36 37 1.376543 CTCTACCTCCGTGCGTAGAA 58.623 55.000 0.00 0.00 40.23 2.10
37 38 0.463295 CCTCTACCTCCGTGCGTAGA 60.463 60.000 0.00 0.00 38.86 2.59
38 39 0.463295 TCCTCTACCTCCGTGCGTAG 60.463 60.000 0.00 0.00 34.49 3.51
39 40 0.182061 ATCCTCTACCTCCGTGCGTA 59.818 55.000 0.00 0.00 0.00 4.42
40 41 1.076923 ATCCTCTACCTCCGTGCGT 60.077 57.895 0.00 0.00 0.00 5.24
41 42 1.360551 CATCCTCTACCTCCGTGCG 59.639 63.158 0.00 0.00 0.00 5.34
42 43 1.742768 CCATCCTCTACCTCCGTGC 59.257 63.158 0.00 0.00 0.00 5.34
43 44 1.742768 GCCATCCTCTACCTCCGTG 59.257 63.158 0.00 0.00 0.00 4.94
44 45 1.457831 GGCCATCCTCTACCTCCGT 60.458 63.158 0.00 0.00 0.00 4.69
45 46 1.457643 TGGCCATCCTCTACCTCCG 60.458 63.158 0.00 0.00 0.00 4.63
46 47 0.105453 TCTGGCCATCCTCTACCTCC 60.105 60.000 5.51 0.00 0.00 4.30
47 48 1.899142 GATCTGGCCATCCTCTACCTC 59.101 57.143 5.51 0.00 0.00 3.85
48 49 1.507300 AGATCTGGCCATCCTCTACCT 59.493 52.381 5.51 0.00 0.00 3.08
49 50 1.622811 CAGATCTGGCCATCCTCTACC 59.377 57.143 15.38 0.00 0.00 3.18
50 51 1.622811 CCAGATCTGGCCATCCTCTAC 59.377 57.143 28.45 0.00 44.73 2.59
51 52 2.021262 CCAGATCTGGCCATCCTCTA 57.979 55.000 28.45 0.00 44.73 2.43
52 53 2.851426 CCAGATCTGGCCATCCTCT 58.149 57.895 28.45 5.92 44.73 3.69
62 63 2.178890 GCGAGCCAAGCCAGATCTG 61.179 63.158 16.24 16.24 0.00 2.90
63 64 2.188994 GCGAGCCAAGCCAGATCT 59.811 61.111 0.00 0.00 0.00 2.75
99 101 1.218047 GACATAGCCGGTCTGCACA 59.782 57.895 1.90 0.00 32.54 4.57
157 159 1.944676 GCGTAGAACTGGGCGATCG 60.945 63.158 11.69 11.69 0.00 3.69
178 180 0.636647 TCTGGCCATCCTCTACCTCA 59.363 55.000 5.51 0.00 0.00 3.86
316 319 3.503363 GCCACGGAGCATCACAGC 61.503 66.667 0.00 0.00 36.25 4.40
385 388 3.374988 TGACAAGGTCGATGCATGATTTC 59.625 43.478 2.46 0.00 34.95 2.17
468 471 1.755200 TGGGTAGGAAGGGAAAGCTT 58.245 50.000 0.00 0.00 0.00 3.74
469 472 1.354705 GTTGGGTAGGAAGGGAAAGCT 59.645 52.381 0.00 0.00 0.00 3.74
474 477 2.295602 GCCGTTGGGTAGGAAGGGA 61.296 63.158 0.00 0.00 34.97 4.20
501 504 0.402887 ACCTTAGGTTTTCACCCGGG 59.597 55.000 22.25 22.25 45.63 5.73
537 540 1.296715 GAGAACACCGCCATCACCT 59.703 57.895 0.00 0.00 0.00 4.00
543 546 1.206132 ACGATATTGAGAACACCGCCA 59.794 47.619 0.00 0.00 0.00 5.69
558 561 1.064979 GCCCCAAGGAGGAAAACGATA 60.065 52.381 0.00 0.00 41.22 2.92
660 666 7.689299 TGCAAAAAGAAACGAAATAAAAAGGG 58.311 30.769 0.00 0.00 0.00 3.95
712 720 6.148480 CAGAAGAAGGTGTTACAAGAATCCTG 59.852 42.308 0.00 0.00 0.00 3.86
744 752 3.569194 TGTTGGTAAGAGAACTGCCAA 57.431 42.857 0.00 0.00 38.59 4.52
745 753 3.788227 ATGTTGGTAAGAGAACTGCCA 57.212 42.857 0.00 0.00 32.82 4.92
746 754 6.569179 TTTAATGTTGGTAAGAGAACTGCC 57.431 37.500 0.00 0.00 0.00 4.85
771 779 1.267806 CTCTGTGCGGCTGTGATTTTT 59.732 47.619 0.00 0.00 0.00 1.94
772 780 0.877071 CTCTGTGCGGCTGTGATTTT 59.123 50.000 0.00 0.00 0.00 1.82
773 781 0.250467 ACTCTGTGCGGCTGTGATTT 60.250 50.000 0.00 0.00 0.00 2.17
774 782 0.608130 TACTCTGTGCGGCTGTGATT 59.392 50.000 0.00 0.00 0.00 2.57
775 783 0.108615 GTACTCTGTGCGGCTGTGAT 60.109 55.000 0.00 0.00 0.00 3.06
842 1132 4.461081 CCGTTTGACTTGGGAATTTCCATA 59.539 41.667 17.08 2.86 38.64 2.74
942 1232 1.028905 CTTGCTTTGTCACCCCGAAA 58.971 50.000 0.00 0.00 0.00 3.46
943 1233 0.181587 TCTTGCTTTGTCACCCCGAA 59.818 50.000 0.00 0.00 0.00 4.30
944 1234 0.181587 TTCTTGCTTTGTCACCCCGA 59.818 50.000 0.00 0.00 0.00 5.14
945 1235 1.001378 CTTTCTTGCTTTGTCACCCCG 60.001 52.381 0.00 0.00 0.00 5.73
946 1236 1.269778 GCTTTCTTGCTTTGTCACCCC 60.270 52.381 0.00 0.00 0.00 4.95
982 1272 1.961180 ATGTCTAGCAGTGGGGCGAC 61.961 60.000 0.00 0.00 39.27 5.19
1251 1552 3.210528 GAGATCGACGCCGGGTCT 61.211 66.667 17.48 0.00 43.79 3.85
1980 2372 3.688159 GTACACCACGGAGCGGGT 61.688 66.667 0.00 0.00 38.10 5.28
2441 2839 2.397597 GCTCTCTTCCTCATCTCCCTT 58.602 52.381 0.00 0.00 0.00 3.95
2588 2988 0.674895 AGGTTTGCTCGATCAGTGGC 60.675 55.000 0.00 0.00 0.00 5.01
2592 2992 2.554142 TGCATAGGTTTGCTCGATCAG 58.446 47.619 0.00 0.00 43.18 2.90
2606 3006 1.408702 CCCCAACCCGAAAATGCATAG 59.591 52.381 0.00 0.00 0.00 2.23
2607 3007 1.006043 TCCCCAACCCGAAAATGCATA 59.994 47.619 0.00 0.00 0.00 3.14
2608 3008 0.252012 TCCCCAACCCGAAAATGCAT 60.252 50.000 0.00 0.00 0.00 3.96
2609 3009 1.153989 TCCCCAACCCGAAAATGCA 59.846 52.632 0.00 0.00 0.00 3.96
2610 3010 0.898326 AGTCCCCAACCCGAAAATGC 60.898 55.000 0.00 0.00 0.00 3.56
2611 3011 1.173913 GAGTCCCCAACCCGAAAATG 58.826 55.000 0.00 0.00 0.00 2.32
2612 3012 1.004394 GAGAGTCCCCAACCCGAAAAT 59.996 52.381 0.00 0.00 0.00 1.82
2613 3013 0.399075 GAGAGTCCCCAACCCGAAAA 59.601 55.000 0.00 0.00 0.00 2.29
2614 3014 1.823169 CGAGAGTCCCCAACCCGAAA 61.823 60.000 0.00 0.00 0.00 3.46
2615 3015 2.280552 CGAGAGTCCCCAACCCGAA 61.281 63.158 0.00 0.00 0.00 4.30
2616 3016 2.678934 CGAGAGTCCCCAACCCGA 60.679 66.667 0.00 0.00 0.00 5.14
2617 3017 3.771160 CCGAGAGTCCCCAACCCG 61.771 72.222 0.00 0.00 0.00 5.28
2618 3018 2.222013 AACCGAGAGTCCCCAACCC 61.222 63.158 0.00 0.00 0.00 4.11
2619 3019 1.003718 CAACCGAGAGTCCCCAACC 60.004 63.158 0.00 0.00 0.00 3.77
2620 3020 0.395312 TTCAACCGAGAGTCCCCAAC 59.605 55.000 0.00 0.00 0.00 3.77
2621 3021 1.133363 TTTCAACCGAGAGTCCCCAA 58.867 50.000 0.00 0.00 0.00 4.12
2622 3022 1.133363 TTTTCAACCGAGAGTCCCCA 58.867 50.000 0.00 0.00 0.00 4.96
2623 3023 2.265589 TTTTTCAACCGAGAGTCCCC 57.734 50.000 0.00 0.00 0.00 4.81
2624 3024 4.828829 TCTATTTTTCAACCGAGAGTCCC 58.171 43.478 0.00 0.00 0.00 4.46
2625 3025 6.796705 TTTCTATTTTTCAACCGAGAGTCC 57.203 37.500 0.00 0.00 0.00 3.85
2640 3040 9.869757 CCCGGAAATTTCAGTATTTTTCTATTT 57.130 29.630 19.49 0.00 0.00 1.40
2641 3041 9.031537 ACCCGGAAATTTCAGTATTTTTCTATT 57.968 29.630 19.49 0.00 0.00 1.73
2642 3042 8.589701 ACCCGGAAATTTCAGTATTTTTCTAT 57.410 30.769 19.49 0.00 0.00 1.98
2643 3043 9.689501 ATACCCGGAAATTTCAGTATTTTTCTA 57.310 29.630 19.49 0.00 0.00 2.10
2644 3044 6.911250 ACCCGGAAATTTCAGTATTTTTCT 57.089 33.333 19.49 0.00 0.00 2.52
2650 3050 9.862149 AGAATTAATACCCGGAAATTTCAGTAT 57.138 29.630 19.49 17.51 0.00 2.12
2652 3052 9.117183 GTAGAATTAATACCCGGAAATTTCAGT 57.883 33.333 19.49 14.77 0.00 3.41
2653 3053 9.338622 AGTAGAATTAATACCCGGAAATTTCAG 57.661 33.333 19.49 15.20 0.00 3.02
2654 3054 9.333724 GAGTAGAATTAATACCCGGAAATTTCA 57.666 33.333 19.49 0.00 0.00 2.69
2655 3055 9.557061 AGAGTAGAATTAATACCCGGAAATTTC 57.443 33.333 9.83 9.83 0.00 2.17
2656 3056 9.557061 GAGAGTAGAATTAATACCCGGAAATTT 57.443 33.333 0.73 0.00 0.00 1.82
2657 3057 7.871463 CGAGAGTAGAATTAATACCCGGAAATT 59.129 37.037 0.73 4.58 0.00 1.82
2658 3058 7.015001 ACGAGAGTAGAATTAATACCCGGAAAT 59.985 37.037 0.73 0.00 46.88 2.17
2659 3059 6.322201 ACGAGAGTAGAATTAATACCCGGAAA 59.678 38.462 0.73 0.00 46.88 3.13
2660 3060 5.829924 ACGAGAGTAGAATTAATACCCGGAA 59.170 40.000 0.73 0.00 46.88 4.30
2661 3061 5.380043 ACGAGAGTAGAATTAATACCCGGA 58.620 41.667 0.73 0.00 46.88 5.14
2662 3062 5.702349 ACGAGAGTAGAATTAATACCCGG 57.298 43.478 0.00 0.00 46.88 5.73
2669 3069 8.573885 TGAAACTTCAGACGAGAGTAGAATTAA 58.426 33.333 0.00 0.00 36.94 1.40
2670 3070 8.107399 TGAAACTTCAGACGAGAGTAGAATTA 57.893 34.615 0.00 0.00 36.94 1.40
2671 3071 6.982852 TGAAACTTCAGACGAGAGTAGAATT 58.017 36.000 0.00 0.00 36.94 2.17
2672 3072 6.576662 TGAAACTTCAGACGAGAGTAGAAT 57.423 37.500 0.00 0.00 36.94 2.40
2673 3073 6.206829 TCATGAAACTTCAGACGAGAGTAGAA 59.793 38.462 0.00 0.00 41.47 2.10
2674 3074 5.705905 TCATGAAACTTCAGACGAGAGTAGA 59.294 40.000 0.00 0.00 41.47 2.59
2675 3075 5.944013 TCATGAAACTTCAGACGAGAGTAG 58.056 41.667 0.00 0.00 41.47 2.57
2676 3076 5.959618 TCATGAAACTTCAGACGAGAGTA 57.040 39.130 0.00 0.00 41.47 2.59
2677 3077 4.855715 TCATGAAACTTCAGACGAGAGT 57.144 40.909 0.00 0.00 43.39 3.24
2678 3078 6.530913 TTTTCATGAAACTTCAGACGAGAG 57.469 37.500 20.35 0.00 41.08 3.20
2679 3079 6.918892 TTTTTCATGAAACTTCAGACGAGA 57.081 33.333 20.35 0.00 41.08 4.04
2699 3099 8.897752 GCTGAGAATACCTCTAATGTCATTTTT 58.102 33.333 2.79 0.00 42.44 1.94
2700 3100 8.049117 TGCTGAGAATACCTCTAATGTCATTTT 58.951 33.333 2.79 0.00 42.44 1.82
2701 3101 7.568349 TGCTGAGAATACCTCTAATGTCATTT 58.432 34.615 2.79 0.00 42.44 2.32
2702 3102 7.129457 TGCTGAGAATACCTCTAATGTCATT 57.871 36.000 3.06 3.06 42.44 2.57
2703 3103 6.737720 TGCTGAGAATACCTCTAATGTCAT 57.262 37.500 0.00 0.00 42.44 3.06
2704 3104 6.544928 TTGCTGAGAATACCTCTAATGTCA 57.455 37.500 0.00 0.00 42.44 3.58
2705 3105 7.849804 TTTTGCTGAGAATACCTCTAATGTC 57.150 36.000 0.00 0.00 42.44 3.06
2706 3106 7.337942 CCTTTTTGCTGAGAATACCTCTAATGT 59.662 37.037 0.00 0.00 42.44 2.71
2707 3107 7.554118 TCCTTTTTGCTGAGAATACCTCTAATG 59.446 37.037 0.00 0.00 42.44 1.90
2708 3108 7.554476 GTCCTTTTTGCTGAGAATACCTCTAAT 59.446 37.037 0.00 0.00 42.44 1.73
2709 3109 6.879458 GTCCTTTTTGCTGAGAATACCTCTAA 59.121 38.462 0.00 0.00 42.44 2.10
2710 3110 6.013725 TGTCCTTTTTGCTGAGAATACCTCTA 60.014 38.462 0.00 0.00 42.44 2.43
2711 3111 5.221925 TGTCCTTTTTGCTGAGAATACCTCT 60.222 40.000 0.00 0.00 42.44 3.69
2712 3112 5.003804 TGTCCTTTTTGCTGAGAATACCTC 58.996 41.667 0.00 0.00 42.30 3.85
2713 3113 4.985538 TGTCCTTTTTGCTGAGAATACCT 58.014 39.130 0.00 0.00 0.00 3.08
2714 3114 5.705609 TTGTCCTTTTTGCTGAGAATACC 57.294 39.130 0.00 0.00 0.00 2.73
2715 3115 7.816640 TGTATTGTCCTTTTTGCTGAGAATAC 58.183 34.615 10.21 10.21 41.73 1.89
2716 3116 7.994425 TGTATTGTCCTTTTTGCTGAGAATA 57.006 32.000 0.00 0.00 0.00 1.75
2717 3117 6.899393 TGTATTGTCCTTTTTGCTGAGAAT 57.101 33.333 0.00 0.00 0.00 2.40
2718 3118 6.707440 TTGTATTGTCCTTTTTGCTGAGAA 57.293 33.333 0.00 0.00 0.00 2.87
2719 3119 6.348458 CGATTGTATTGTCCTTTTTGCTGAGA 60.348 38.462 0.00 0.00 0.00 3.27
2720 3120 5.796935 CGATTGTATTGTCCTTTTTGCTGAG 59.203 40.000 0.00 0.00 0.00 3.35
2721 3121 5.471797 TCGATTGTATTGTCCTTTTTGCTGA 59.528 36.000 0.00 0.00 0.00 4.26
2722 3122 5.698832 TCGATTGTATTGTCCTTTTTGCTG 58.301 37.500 0.00 0.00 0.00 4.41
2723 3123 5.957842 TCGATTGTATTGTCCTTTTTGCT 57.042 34.783 0.00 0.00 0.00 3.91
2724 3124 8.856490 ATAATCGATTGTATTGTCCTTTTTGC 57.144 30.769 20.87 0.00 0.00 3.68
2757 3157 9.635404 TCCGACCTATAATCCATTTAAACAATT 57.365 29.630 0.00 0.00 0.00 2.32
2758 3158 9.063615 GTCCGACCTATAATCCATTTAAACAAT 57.936 33.333 0.00 0.00 0.00 2.71
2759 3159 7.499895 GGTCCGACCTATAATCCATTTAAACAA 59.500 37.037 10.59 0.00 34.73 2.83
2760 3160 6.993902 GGTCCGACCTATAATCCATTTAAACA 59.006 38.462 10.59 0.00 34.73 2.83
2761 3161 6.146673 CGGTCCGACCTATAATCCATTTAAAC 59.853 42.308 15.70 0.00 35.66 2.01
2762 3162 6.183360 ACGGTCCGACCTATAATCCATTTAAA 60.183 38.462 20.51 0.00 35.66 1.52
2763 3163 5.305128 ACGGTCCGACCTATAATCCATTTAA 59.695 40.000 20.51 0.00 35.66 1.52
2764 3164 4.834496 ACGGTCCGACCTATAATCCATTTA 59.166 41.667 20.51 0.00 35.66 1.40
2765 3165 3.644738 ACGGTCCGACCTATAATCCATTT 59.355 43.478 20.51 0.00 35.66 2.32
2766 3166 3.236896 ACGGTCCGACCTATAATCCATT 58.763 45.455 20.51 0.00 35.66 3.16
2767 3167 2.885616 ACGGTCCGACCTATAATCCAT 58.114 47.619 20.51 0.00 35.66 3.41
2768 3168 2.369983 ACGGTCCGACCTATAATCCA 57.630 50.000 20.51 0.00 35.66 3.41
2769 3169 5.397142 AAATACGGTCCGACCTATAATCC 57.603 43.478 20.51 0.00 35.66 3.01
2770 3170 6.685657 AGAAAATACGGTCCGACCTATAATC 58.314 40.000 20.51 7.56 35.66 1.75
2771 3171 6.661304 AGAAAATACGGTCCGACCTATAAT 57.339 37.500 20.51 0.00 35.66 1.28
2772 3172 6.096705 TGAAGAAAATACGGTCCGACCTATAA 59.903 38.462 20.51 0.00 35.66 0.98
2773 3173 5.593909 TGAAGAAAATACGGTCCGACCTATA 59.406 40.000 20.51 8.23 35.66 1.31
2774 3174 4.403432 TGAAGAAAATACGGTCCGACCTAT 59.597 41.667 20.51 2.33 35.66 2.57
2775 3175 3.763360 TGAAGAAAATACGGTCCGACCTA 59.237 43.478 20.51 0.00 35.66 3.08
2776 3176 2.564062 TGAAGAAAATACGGTCCGACCT 59.436 45.455 20.51 0.00 35.66 3.85
2777 3177 2.669924 GTGAAGAAAATACGGTCCGACC 59.330 50.000 20.51 7.59 34.05 4.79
2778 3178 3.582780 AGTGAAGAAAATACGGTCCGAC 58.417 45.455 20.51 0.85 0.00 4.79
2779 3179 3.947910 AGTGAAGAAAATACGGTCCGA 57.052 42.857 20.51 1.60 0.00 4.55
2780 3180 6.470557 TTTTAGTGAAGAAAATACGGTCCG 57.529 37.500 10.48 10.48 0.00 4.79
2790 3190 8.170553 GCGTCCGTAATATTTTTAGTGAAGAAA 58.829 33.333 0.00 0.00 0.00 2.52
2791 3191 7.201548 GGCGTCCGTAATATTTTTAGTGAAGAA 60.202 37.037 0.00 0.00 0.00 2.52
2792 3192 6.256321 GGCGTCCGTAATATTTTTAGTGAAGA 59.744 38.462 0.00 0.00 0.00 2.87
2793 3193 6.036300 TGGCGTCCGTAATATTTTTAGTGAAG 59.964 38.462 0.00 0.00 0.00 3.02
2794 3194 5.873712 TGGCGTCCGTAATATTTTTAGTGAA 59.126 36.000 0.00 0.00 0.00 3.18
2795 3195 5.417811 TGGCGTCCGTAATATTTTTAGTGA 58.582 37.500 0.00 0.00 0.00 3.41
2796 3196 5.721876 TGGCGTCCGTAATATTTTTAGTG 57.278 39.130 0.00 0.00 0.00 2.74
2797 3197 6.930667 AATGGCGTCCGTAATATTTTTAGT 57.069 33.333 0.00 0.00 0.00 2.24
2798 3198 8.623310 AAAAATGGCGTCCGTAATATTTTTAG 57.377 30.769 4.88 0.00 36.51 1.85
2820 3220 5.877031 TCACGTACGGAATTTTGTGAAAAA 58.123 33.333 21.06 0.00 33.79 1.94
2821 3221 5.481200 TCACGTACGGAATTTTGTGAAAA 57.519 34.783 21.06 0.00 33.79 2.29
2822 3222 5.676532 ATCACGTACGGAATTTTGTGAAA 57.323 34.783 21.06 0.00 39.49 2.69
2823 3223 6.782298 TTATCACGTACGGAATTTTGTGAA 57.218 33.333 21.06 3.85 39.49 3.18
2824 3224 6.782298 TTTATCACGTACGGAATTTTGTGA 57.218 33.333 21.06 11.57 40.24 3.58
2825 3225 7.007905 CCATTTTATCACGTACGGAATTTTGTG 59.992 37.037 21.06 6.06 0.00 3.33
2826 3226 7.024768 CCATTTTATCACGTACGGAATTTTGT 58.975 34.615 21.06 0.98 0.00 2.83
2827 3227 7.217447 GTCCATTTTATCACGTACGGAATTTTG 59.783 37.037 21.06 7.60 0.00 2.44
2828 3228 7.094720 TGTCCATTTTATCACGTACGGAATTTT 60.095 33.333 21.06 2.00 0.00 1.82
2829 3229 6.372103 TGTCCATTTTATCACGTACGGAATTT 59.628 34.615 21.06 2.09 0.00 1.82
2830 3230 5.875910 TGTCCATTTTATCACGTACGGAATT 59.124 36.000 21.06 3.92 0.00 2.17
2831 3231 5.421277 TGTCCATTTTATCACGTACGGAAT 58.579 37.500 21.06 14.31 0.00 3.01
2832 3232 4.818642 TGTCCATTTTATCACGTACGGAA 58.181 39.130 21.06 7.30 0.00 4.30
2833 3233 4.453177 TGTCCATTTTATCACGTACGGA 57.547 40.909 21.06 14.09 0.00 4.69
2834 3234 4.201744 GGTTGTCCATTTTATCACGTACGG 60.202 45.833 21.06 8.79 0.00 4.02
2835 3235 4.389382 TGGTTGTCCATTTTATCACGTACG 59.611 41.667 15.01 15.01 39.03 3.67
2836 3236 5.624292 GTGGTTGTCCATTTTATCACGTAC 58.376 41.667 0.00 0.00 46.20 3.67
2837 3237 4.389382 CGTGGTTGTCCATTTTATCACGTA 59.611 41.667 0.00 0.00 46.20 3.57
2838 3238 3.187637 CGTGGTTGTCCATTTTATCACGT 59.812 43.478 0.00 0.00 46.20 4.49
2839 3239 3.187637 ACGTGGTTGTCCATTTTATCACG 59.812 43.478 10.32 10.32 46.20 4.35
2840 3240 4.759516 ACGTGGTTGTCCATTTTATCAC 57.240 40.909 0.00 0.00 46.20 3.06
2841 3241 5.776173 AAACGTGGTTGTCCATTTTATCA 57.224 34.783 0.00 0.00 46.20 2.15
2842 3242 7.586747 TCTTAAACGTGGTTGTCCATTTTATC 58.413 34.615 0.00 0.00 46.20 1.75
2843 3243 7.308951 CCTCTTAAACGTGGTTGTCCATTTTAT 60.309 37.037 0.00 0.00 46.20 1.40
2844 3244 6.016943 CCTCTTAAACGTGGTTGTCCATTTTA 60.017 38.462 0.00 0.00 46.20 1.52
2845 3245 5.221165 CCTCTTAAACGTGGTTGTCCATTTT 60.221 40.000 0.00 0.00 46.20 1.82
2846 3246 4.277423 CCTCTTAAACGTGGTTGTCCATTT 59.723 41.667 0.00 0.00 46.20 2.32
2847 3247 3.818773 CCTCTTAAACGTGGTTGTCCATT 59.181 43.478 0.00 0.00 46.20 3.16
2848 3248 3.071892 TCCTCTTAAACGTGGTTGTCCAT 59.928 43.478 0.00 0.00 46.20 3.41
2849 3249 2.435069 TCCTCTTAAACGTGGTTGTCCA 59.565 45.455 0.00 0.00 42.05 4.02
2850 3250 3.116079 TCCTCTTAAACGTGGTTGTCC 57.884 47.619 0.00 0.00 0.00 4.02
2851 3251 3.059120 GCTTCCTCTTAAACGTGGTTGTC 60.059 47.826 0.00 0.00 0.00 3.18
2852 3252 2.876550 GCTTCCTCTTAAACGTGGTTGT 59.123 45.455 0.00 0.00 0.00 3.32
2853 3253 2.875933 TGCTTCCTCTTAAACGTGGTTG 59.124 45.455 0.00 0.00 0.00 3.77
2854 3254 3.202829 TGCTTCCTCTTAAACGTGGTT 57.797 42.857 0.00 0.00 0.00 3.67
2855 3255 2.922740 TGCTTCCTCTTAAACGTGGT 57.077 45.000 0.00 0.00 0.00 4.16
2856 3256 3.074412 ACATGCTTCCTCTTAAACGTGG 58.926 45.455 0.00 0.00 0.00 4.94
2857 3257 4.749245 AACATGCTTCCTCTTAAACGTG 57.251 40.909 0.00 0.00 0.00 4.49
2858 3258 6.870971 TTTAACATGCTTCCTCTTAAACGT 57.129 33.333 0.00 0.00 0.00 3.99
2884 3284 9.536510 TGCACCCTAAATAGTAAATTAAAAGGT 57.463 29.630 0.00 0.00 0.00 3.50
2888 3288 8.417884 GCCATGCACCCTAAATAGTAAATTAAA 58.582 33.333 0.00 0.00 0.00 1.52
2889 3289 7.561722 TGCCATGCACCCTAAATAGTAAATTAA 59.438 33.333 0.00 0.00 31.71 1.40
2890 3290 7.063593 TGCCATGCACCCTAAATAGTAAATTA 58.936 34.615 0.00 0.00 31.71 1.40
2891 3291 5.896678 TGCCATGCACCCTAAATAGTAAATT 59.103 36.000 0.00 0.00 31.71 1.82
2892 3292 5.454062 TGCCATGCACCCTAAATAGTAAAT 58.546 37.500 0.00 0.00 31.71 1.40
2893 3293 4.861196 TGCCATGCACCCTAAATAGTAAA 58.139 39.130 0.00 0.00 31.71 2.01
2894 3294 4.511786 TGCCATGCACCCTAAATAGTAA 57.488 40.909 0.00 0.00 31.71 2.24
2895 3295 4.506625 GGATGCCATGCACCCTAAATAGTA 60.507 45.833 0.00 0.00 39.62 1.82
2896 3296 3.490348 GATGCCATGCACCCTAAATAGT 58.510 45.455 0.00 0.00 43.04 2.12
2897 3297 2.821969 GGATGCCATGCACCCTAAATAG 59.178 50.000 0.00 0.00 39.62 1.73
2898 3298 2.813726 CGGATGCCATGCACCCTAAATA 60.814 50.000 0.00 0.00 40.83 1.40
2899 3299 1.708341 GGATGCCATGCACCCTAAAT 58.292 50.000 0.00 0.00 39.62 1.40
2900 3300 0.751277 CGGATGCCATGCACCCTAAA 60.751 55.000 0.00 0.00 40.83 1.85
2901 3301 1.152984 CGGATGCCATGCACCCTAA 60.153 57.895 0.00 0.00 40.83 2.69
2902 3302 1.631071 TTCGGATGCCATGCACCCTA 61.631 55.000 0.00 0.00 40.83 3.53
2903 3303 2.497792 TTTCGGATGCCATGCACCCT 62.498 55.000 0.00 0.00 40.83 4.34
2904 3304 2.008268 CTTTCGGATGCCATGCACCC 62.008 60.000 0.00 0.00 43.04 4.61
2905 3305 1.031571 TCTTTCGGATGCCATGCACC 61.032 55.000 0.00 0.00 43.04 5.01
2906 3306 1.027357 ATCTTTCGGATGCCATGCAC 58.973 50.000 0.00 0.00 43.04 4.57
2907 3307 1.026584 CATCTTTCGGATGCCATGCA 58.973 50.000 0.00 0.00 44.21 3.96
2908 3308 3.859650 CATCTTTCGGATGCCATGC 57.140 52.632 0.00 0.00 44.21 4.06
2915 3315 2.431782 CCCCAAAATGCATCTTTCGGAT 59.568 45.455 14.75 0.00 34.51 4.18
2916 3316 1.824230 CCCCAAAATGCATCTTTCGGA 59.176 47.619 14.75 0.00 0.00 4.55
2917 3317 1.740043 GCCCCAAAATGCATCTTTCGG 60.740 52.381 0.00 5.47 0.00 4.30
2918 3318 1.205417 AGCCCCAAAATGCATCTTTCG 59.795 47.619 0.00 0.00 0.00 3.46
2919 3319 2.624636 CAGCCCCAAAATGCATCTTTC 58.375 47.619 0.00 0.00 0.00 2.62
2920 3320 1.339342 GCAGCCCCAAAATGCATCTTT 60.339 47.619 0.00 0.20 39.75 2.52
2921 3321 0.251073 GCAGCCCCAAAATGCATCTT 59.749 50.000 0.00 0.00 39.75 2.40
2922 3322 0.616679 AGCAGCCCCAAAATGCATCT 60.617 50.000 0.00 0.00 42.45 2.90
2923 3323 1.113788 TAGCAGCCCCAAAATGCATC 58.886 50.000 0.00 0.00 42.45 3.91
2924 3324 1.207811 GTTAGCAGCCCCAAAATGCAT 59.792 47.619 0.00 0.00 42.45 3.96
2925 3325 0.607620 GTTAGCAGCCCCAAAATGCA 59.392 50.000 0.00 0.00 42.45 3.96
2926 3326 0.607620 TGTTAGCAGCCCCAAAATGC 59.392 50.000 0.00 0.00 40.29 3.56
2927 3327 4.099881 ACATATGTTAGCAGCCCCAAAATG 59.900 41.667 1.41 0.00 0.00 2.32
2928 3328 4.289245 ACATATGTTAGCAGCCCCAAAAT 58.711 39.130 1.41 0.00 0.00 1.82
2929 3329 3.707316 ACATATGTTAGCAGCCCCAAAA 58.293 40.909 1.41 0.00 0.00 2.44
2930 3330 3.380471 ACATATGTTAGCAGCCCCAAA 57.620 42.857 1.41 0.00 0.00 3.28
2931 3331 4.397420 CATACATATGTTAGCAGCCCCAA 58.603 43.478 14.77 0.00 0.00 4.12
2932 3332 3.244875 CCATACATATGTTAGCAGCCCCA 60.245 47.826 14.77 0.00 31.82 4.96
2933 3333 3.009033 TCCATACATATGTTAGCAGCCCC 59.991 47.826 14.77 0.00 31.82 5.80
2934 3334 4.286297 TCCATACATATGTTAGCAGCCC 57.714 45.455 14.77 0.00 31.82 5.19
2935 3335 5.248640 ACATCCATACATATGTTAGCAGCC 58.751 41.667 14.77 0.00 32.43 4.85
2936 3336 8.393366 CAATACATCCATACATATGTTAGCAGC 58.607 37.037 14.77 0.00 37.50 5.25
2937 3337 9.440773 ACAATACATCCATACATATGTTAGCAG 57.559 33.333 14.77 3.29 37.50 4.24
2946 3346 9.309224 ACAGCTAGTACAATACATCCATACATA 57.691 33.333 0.00 0.00 0.00 2.29
2947 3347 8.195165 ACAGCTAGTACAATACATCCATACAT 57.805 34.615 0.00 0.00 0.00 2.29
2948 3348 7.597288 ACAGCTAGTACAATACATCCATACA 57.403 36.000 0.00 0.00 0.00 2.29
2949 3349 7.926555 ACAACAGCTAGTACAATACATCCATAC 59.073 37.037 0.00 0.00 0.00 2.39
2950 3350 8.018537 ACAACAGCTAGTACAATACATCCATA 57.981 34.615 0.00 0.00 0.00 2.74
2951 3351 6.889198 ACAACAGCTAGTACAATACATCCAT 58.111 36.000 0.00 0.00 0.00 3.41
2952 3352 6.294361 ACAACAGCTAGTACAATACATCCA 57.706 37.500 0.00 0.00 0.00 3.41
2953 3353 7.932120 CTACAACAGCTAGTACAATACATCC 57.068 40.000 0.00 0.00 0.00 3.51
2969 3369 1.468520 CAATGGGGTTCGCTACAACAG 59.531 52.381 0.00 0.00 0.00 3.16
2970 3370 1.202830 ACAATGGGGTTCGCTACAACA 60.203 47.619 0.00 0.00 0.00 3.33
2971 3371 1.467342 GACAATGGGGTTCGCTACAAC 59.533 52.381 0.00 0.00 0.00 3.32
2972 3372 1.612199 GGACAATGGGGTTCGCTACAA 60.612 52.381 0.00 0.00 0.00 2.41
2973 3373 0.035820 GGACAATGGGGTTCGCTACA 60.036 55.000 0.00 0.00 0.00 2.74
2974 3374 0.252197 AGGACAATGGGGTTCGCTAC 59.748 55.000 0.00 0.00 0.00 3.58
2975 3375 0.251916 CAGGACAATGGGGTTCGCTA 59.748 55.000 0.00 0.00 0.00 4.26
2976 3376 1.002134 CAGGACAATGGGGTTCGCT 60.002 57.895 0.00 0.00 0.00 4.93
2977 3377 2.046285 CCAGGACAATGGGGTTCGC 61.046 63.158 0.00 0.00 36.64 4.70
2978 3378 0.392998 CTCCAGGACAATGGGGTTCG 60.393 60.000 0.00 0.00 41.01 3.95
2979 3379 0.034089 CCTCCAGGACAATGGGGTTC 60.034 60.000 0.00 0.00 39.41 3.62
2980 3380 0.776080 ACCTCCAGGACAATGGGGTT 60.776 55.000 0.00 0.00 39.41 4.11
2981 3381 0.120377 TACCTCCAGGACAATGGGGT 59.880 55.000 0.00 9.77 39.41 4.95
2982 3382 1.295020 TTACCTCCAGGACAATGGGG 58.705 55.000 0.00 0.00 40.89 4.96
2983 3383 3.496870 GCTATTACCTCCAGGACAATGGG 60.497 52.174 0.00 0.00 41.01 4.00
2984 3384 3.136443 TGCTATTACCTCCAGGACAATGG 59.864 47.826 0.00 2.30 42.11 3.16
2985 3385 4.130118 GTGCTATTACCTCCAGGACAATG 58.870 47.826 0.00 0.00 38.94 2.82
2986 3386 3.136626 GGTGCTATTACCTCCAGGACAAT 59.863 47.826 0.00 1.54 37.74 2.71
2987 3387 2.504175 GGTGCTATTACCTCCAGGACAA 59.496 50.000 0.00 0.00 37.74 3.18
2988 3388 2.116238 GGTGCTATTACCTCCAGGACA 58.884 52.381 0.00 0.00 37.74 4.02
2989 3389 2.103263 CTGGTGCTATTACCTCCAGGAC 59.897 54.545 0.00 0.00 41.43 3.85
2990 3390 2.398588 CTGGTGCTATTACCTCCAGGA 58.601 52.381 0.00 0.00 41.43 3.86
2991 3391 2.918712 CTGGTGCTATTACCTCCAGG 57.081 55.000 0.00 0.00 41.43 4.45
2992 3392 2.366916 CTCCTGGTGCTATTACCTCCAG 59.633 54.545 0.00 0.00 41.43 3.86
3077 3477 1.408340 CACATTGGGTGCAAGTTGTGA 59.592 47.619 4.48 0.00 41.36 3.58
3105 3505 1.409427 GTGCTACGATTGGCTAGGACT 59.591 52.381 0.00 0.00 30.74 3.85
3541 3943 0.960364 ACTACCAACCAATGCGGCTG 60.960 55.000 0.00 0.00 39.03 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.