Multiple sequence alignment - TraesCS5B01G318400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G318400 chr5B 100.000 9164 0 0 1 9164 502509421 502500258 0.000000e+00 16923.0
1 TraesCS5B01G318400 chr5B 97.297 111 1 2 5415 5523 701174759 701174649 4.370000e-43 187.0
2 TraesCS5B01G318400 chr5B 91.837 98 4 4 7024 7120 411034768 411034862 5.770000e-27 134.0
3 TraesCS5B01G318400 chr5D 98.456 4599 48 7 839 5420 416078018 416073426 0.000000e+00 8078.0
4 TraesCS5B01G318400 chr5D 98.366 3549 48 6 5512 9052 416073429 416069883 0.000000e+00 6224.0
5 TraesCS5B01G318400 chr5D 87.013 385 25 10 186 565 15231477 15231841 2.380000e-110 411.0
6 TraesCS5B01G318400 chr5D 92.308 130 9 1 8 137 15231355 15231483 5.650000e-42 183.0
7 TraesCS5B01G318400 chr5D 92.063 126 7 1 5928 6050 416072964 416072839 3.400000e-39 174.0
8 TraesCS5B01G318400 chr5D 91.270 126 8 1 5976 6101 416073012 416072890 1.580000e-37 169.0
9 TraesCS5B01G318400 chr5D 89.691 97 7 3 509 604 15230860 15230766 4.490000e-23 121.0
10 TraesCS5B01G318400 chr5A 98.001 3801 52 11 839 4621 528587738 528583944 0.000000e+00 6577.0
11 TraesCS5B01G318400 chr5A 97.625 1558 30 2 5510 7067 528582935 528581385 0.000000e+00 2665.0
12 TraesCS5B01G318400 chr5A 96.077 1453 43 7 7610 9050 528580767 528579317 0.000000e+00 2355.0
13 TraesCS5B01G318400 chr5A 98.148 810 7 1 4618 5419 528583745 528582936 0.000000e+00 1406.0
14 TraesCS5B01G318400 chr5A 97.786 542 8 3 7066 7605 528581281 528580742 0.000000e+00 931.0
15 TraesCS5B01G318400 chr5A 89.758 537 38 11 228 761 557324548 557325070 0.000000e+00 671.0
16 TraesCS5B01G318400 chr5A 100.000 114 0 0 9051 9164 390364873 390364760 2.590000e-50 211.0
17 TraesCS5B01G318400 chr5A 92.063 126 7 1 5928 6050 528582473 528582348 3.400000e-39 174.0
18 TraesCS5B01G318400 chr5A 90.361 83 7 1 2 83 557324467 557324549 3.500000e-19 108.0
19 TraesCS5B01G318400 chr5A 95.000 40 2 0 5553 5592 38014671 38014710 7.680000e-06 63.9
20 TraesCS5B01G318400 chr7D 97.696 2170 37 5 2137 4294 603364970 603362802 0.000000e+00 3718.0
21 TraesCS5B01G318400 chr7D 87.914 1448 128 19 1968 3398 574037751 574039168 0.000000e+00 1661.0
22 TraesCS5B01G318400 chr7D 93.289 1043 48 13 4387 5420 603362808 603361779 0.000000e+00 1519.0
23 TraesCS5B01G318400 chr7D 92.157 1020 55 9 5585 6603 603361772 603360777 0.000000e+00 1417.0
24 TraesCS5B01G318400 chr7D 90.864 810 37 12 870 1655 603376086 603375290 0.000000e+00 1051.0
25 TraesCS5B01G318400 chr7D 89.098 743 48 11 7664 8405 603359851 603359141 0.000000e+00 893.0
26 TraesCS5B01G318400 chr7D 96.516 488 14 2 1651 2136 603368916 603368430 0.000000e+00 804.0
27 TraesCS5B01G318400 chr7D 94.005 367 18 3 6633 6998 603360786 603360423 3.740000e-153 553.0
28 TraesCS5B01G318400 chr7D 86.192 239 16 7 8403 8630 603358980 603358748 9.190000e-60 243.0
29 TraesCS5B01G318400 chr7D 95.890 146 6 0 990 1135 574036778 574036923 4.280000e-58 237.0
30 TraesCS5B01G318400 chr7D 98.387 124 1 1 9042 9164 622227545 622227668 5.570000e-52 217.0
31 TraesCS5B01G318400 chr7D 90.226 133 10 1 5928 6057 603361389 603361257 4.400000e-38 171.0
32 TraesCS5B01G318400 chr7D 92.208 77 4 1 1892 1966 574037552 574037628 3.500000e-19 108.0
33 TraesCS5B01G318400 chr7A 94.656 2283 91 17 1361 3631 696031306 696029043 0.000000e+00 3511.0
34 TraesCS5B01G318400 chr7A 90.934 1831 103 20 3631 5420 696025716 696023908 0.000000e+00 2403.0
35 TraesCS5B01G318400 chr7A 86.538 1404 116 37 2827 4178 663809398 663808016 0.000000e+00 1478.0
36 TraesCS5B01G318400 chr7A 91.667 1020 65 9 5585 6603 696023901 696022901 0.000000e+00 1395.0
37 TraesCS5B01G318400 chr7A 85.123 1425 110 47 7664 9051 696022036 696020677 0.000000e+00 1363.0
38 TraesCS5B01G318400 chr7A 87.913 968 75 17 4462 5420 663807838 663806904 0.000000e+00 1101.0
39 TraesCS5B01G318400 chr7A 95.380 368 13 3 6632 6998 696022911 696022547 4.770000e-162 582.0
40 TraesCS5B01G318400 chr7A 87.626 396 39 7 1884 2276 663810408 663810020 1.400000e-122 451.0
41 TraesCS5B01G318400 chr7A 84.455 431 31 16 5585 6009 663806897 663806497 8.630000e-105 392.0
42 TraesCS5B01G318400 chr7A 91.039 279 13 9 867 1139 696031645 696031373 5.230000e-97 366.0
43 TraesCS5B01G318400 chr7A 88.077 260 23 5 6143 6394 663806497 663806238 1.500000e-77 302.0
44 TraesCS5B01G318400 chr7A 95.238 147 7 0 993 1139 663811195 663811049 5.530000e-57 233.0
45 TraesCS5B01G318400 chr7A 93.103 116 8 0 9049 9164 138380628 138380743 4.400000e-38 171.0
46 TraesCS5B01G318400 chr7A 88.800 125 14 0 4177 4301 663807987 663807863 4.430000e-33 154.0
47 TraesCS5B01G318400 chr7A 82.192 73 10 2 5523 5592 9329374 9329302 9.940000e-05 60.2
48 TraesCS5B01G318400 chr7B 89.095 1614 107 37 3843 5420 684485438 684483858 0.000000e+00 1941.0
49 TraesCS5B01G318400 chr7B 97.145 1086 27 3 6254 7337 684472556 684471473 0.000000e+00 1831.0
50 TraesCS5B01G318400 chr7B 86.966 913 92 13 2729 3623 684486474 684485571 0.000000e+00 1002.0
51 TraesCS5B01G318400 chr7B 91.304 713 43 9 7328 8035 684471317 684470619 0.000000e+00 955.0
52 TraesCS5B01G318400 chr7B 91.545 686 48 5 5585 6267 684483847 684483169 0.000000e+00 937.0
53 TraesCS5B01G318400 chr7B 86.658 742 65 13 841 1554 684549262 684548527 0.000000e+00 791.0
54 TraesCS5B01G318400 chr7B 87.465 718 42 24 8343 9051 684461546 684460868 0.000000e+00 784.0
55 TraesCS5B01G318400 chr7B 93.206 471 24 3 7888 8357 684462055 684461592 0.000000e+00 686.0
56 TraesCS5B01G318400 chr7B 92.126 381 19 4 8029 8405 684469662 684469289 2.270000e-145 527.0
57 TraesCS5B01G318400 chr7B 95.131 267 10 3 875 1138 684487172 684486906 1.420000e-112 418.0
58 TraesCS5B01G318400 chr7B 93.506 231 12 3 7664 7894 684465941 684465714 3.170000e-89 340.0
59 TraesCS5B01G318400 chr7B 85.547 256 28 5 7116 7370 684466442 684466195 9.130000e-65 259.0
60 TraesCS5B01G318400 chr7B 97.080 137 4 0 3672 3808 684485575 684485439 1.990000e-56 231.0
61 TraesCS5B01G318400 chr7B 96.396 111 4 0 5408 5518 40404454 40404564 5.650000e-42 183.0
62 TraesCS5B01G318400 chr7B 92.800 125 7 1 534 658 104321592 104321714 7.310000e-41 180.0
63 TraesCS5B01G318400 chr7B 92.708 96 5 2 7027 7122 639796290 639796197 4.460000e-28 137.0
64 TraesCS5B01G318400 chr7B 98.701 77 1 0 1552 1628 684546807 684546731 4.460000e-28 137.0
65 TraesCS5B01G318400 chr7B 81.250 160 15 6 689 847 104321714 104321859 2.090000e-21 115.0
66 TraesCS5B01G318400 chr7B 95.000 40 2 0 5553 5592 203031494 203031455 7.680000e-06 63.9
67 TraesCS5B01G318400 chr6A 89.141 838 72 13 2 835 602682600 602683422 0.000000e+00 1026.0
68 TraesCS5B01G318400 chr6A 85.976 763 65 19 2 746 155790413 155791151 0.000000e+00 778.0
69 TraesCS5B01G318400 chr6A 91.139 395 24 7 270 658 258144126 258144515 8.150000e-145 525.0
70 TraesCS5B01G318400 chr6A 88.776 98 7 4 509 604 155789922 155789827 5.810000e-22 117.0
71 TraesCS5B01G318400 chr6A 95.833 72 2 1 689 760 258144515 258144585 2.090000e-21 115.0
72 TraesCS5B01G318400 chr6A 91.667 84 5 2 509 590 602682182 602682099 2.090000e-21 115.0
73 TraesCS5B01G318400 chr6A 88.660 97 6 5 509 604 258144020 258143928 7.520000e-21 113.0
74 TraesCS5B01G318400 chr1D 91.988 674 43 10 2 670 38562087 38562754 0.000000e+00 935.0
75 TraesCS5B01G318400 chr1D 100.000 114 0 0 9051 9164 399188170 399188057 2.590000e-50 211.0
76 TraesCS5B01G318400 chr1D 91.304 46 3 1 5553 5597 100882936 100882891 2.760000e-05 62.1
77 TraesCS5B01G318400 chr3B 88.418 613 51 14 228 835 145510703 145511300 0.000000e+00 721.0
78 TraesCS5B01G318400 chr3B 98.374 123 0 2 9043 9164 51787769 51787890 2.000000e-51 215.0
79 TraesCS5B01G318400 chr3B 100.000 116 0 0 9049 9164 629551778 629551893 2.000000e-51 215.0
80 TraesCS5B01G318400 chr3B 94.068 118 2 4 5396 5513 719043999 719044111 3.400000e-39 174.0
81 TraesCS5B01G318400 chr3B 87.179 117 9 4 7011 7126 478078460 478078349 2.690000e-25 128.0
82 TraesCS5B01G318400 chr3B 90.244 82 8 0 2 83 145510623 145510704 3.500000e-19 108.0
83 TraesCS5B01G318400 chr3B 91.111 45 3 1 5553 5596 472309405 472309449 9.940000e-05 60.2
84 TraesCS5B01G318400 chr2A 88.254 613 51 15 228 835 557640276 557640872 0.000000e+00 713.0
85 TraesCS5B01G318400 chr2A 97.170 106 2 1 5413 5518 92494422 92494526 2.630000e-40 178.0
86 TraesCS5B01G318400 chr2A 88.288 111 8 5 7020 7128 4139204 4139311 2.690000e-25 128.0
87 TraesCS5B01G318400 chr2A 93.902 82 5 0 2 83 557640196 557640277 3.470000e-24 124.0
88 TraesCS5B01G318400 chr4A 90.323 217 20 1 7668 7884 311930846 311931061 5.420000e-72 283.0
89 TraesCS5B01G318400 chr2B 89.954 219 21 1 7668 7886 88674452 88674669 1.950000e-71 281.0
90 TraesCS5B01G318400 chr2B 99.038 104 1 0 5413 5516 584129502 584129399 4.370000e-43 187.0
91 TraesCS5B01G318400 chr2B 96.491 114 1 3 5404 5515 418953678 418953566 1.570000e-42 185.0
92 TraesCS5B01G318400 chr2B 91.525 118 10 0 9047 9164 197721216 197721333 7.360000e-36 163.0
93 TraesCS5B01G318400 chr2B 95.000 40 1 1 5553 5592 447363864 447363826 2.760000e-05 62.1
94 TraesCS5B01G318400 chr3D 100.000 119 0 0 9046 9164 467281037 467281155 4.310000e-53 220.0
95 TraesCS5B01G318400 chr3D 93.548 93 3 3 7029 7120 22679150 22679060 1.610000e-27 135.0
96 TraesCS5B01G318400 chr6B 99.145 117 1 0 9048 9164 20716842 20716958 2.590000e-50 211.0
97 TraesCS5B01G318400 chr6B 96.330 109 4 0 5407 5515 424080493 424080601 7.310000e-41 180.0
98 TraesCS5B01G318400 chr6B 96.330 109 4 0 5407 5515 424303206 424303314 7.310000e-41 180.0
99 TraesCS5B01G318400 chr6B 91.538 130 9 2 5391 5519 300732243 300732371 2.630000e-40 178.0
100 TraesCS5B01G318400 chr6B 91.111 45 3 1 5553 5596 564059857 564059813 9.940000e-05 60.2
101 TraesCS5B01G318400 chr3A 88.034 117 8 4 7011 7126 489193190 489193079 5.770000e-27 134.0
102 TraesCS5B01G318400 chr1A 86.667 60 7 1 32 91 348700184 348700126 2.140000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G318400 chr5B 502500258 502509421 9163 True 16923.000000 16923 100.000000 1 9164 1 chr5B.!!$R1 9163
1 TraesCS5B01G318400 chr5D 416069883 416078018 8135 True 3661.250000 8078 95.038750 839 9052 4 chr5D.!!$R2 8213
2 TraesCS5B01G318400 chr5A 528579317 528587738 8421 True 2351.333333 6577 96.616667 839 9050 6 chr5A.!!$R2 8211
3 TraesCS5B01G318400 chr5A 557324467 557325070 603 False 389.500000 671 90.059500 2 761 2 chr5A.!!$F2 759
4 TraesCS5B01G318400 chr7D 603358748 603368916 10168 True 1164.750000 3718 92.397375 1651 8630 8 chr7D.!!$R2 6979
5 TraesCS5B01G318400 chr7D 603375290 603376086 796 True 1051.000000 1051 90.864000 870 1655 1 chr7D.!!$R1 785
6 TraesCS5B01G318400 chr7D 574036778 574039168 2390 False 668.666667 1661 92.004000 990 3398 3 chr7D.!!$F2 2408
7 TraesCS5B01G318400 chr7A 696020677 696031645 10968 True 1603.333333 3511 91.466500 867 9051 6 chr7A.!!$R3 8184
8 TraesCS5B01G318400 chr7A 663806238 663811195 4957 True 587.285714 1478 88.378143 993 6394 7 chr7A.!!$R2 5401
9 TraesCS5B01G318400 chr7B 684483169 684487172 4003 True 905.800000 1941 91.963400 875 6267 5 chr7B.!!$R4 5392
10 TraesCS5B01G318400 chr7B 684460868 684472556 11688 True 768.857143 1831 91.471286 6254 9051 7 chr7B.!!$R3 2797
11 TraesCS5B01G318400 chr7B 684546731 684549262 2531 True 464.000000 791 92.679500 841 1628 2 chr7B.!!$R5 787
12 TraesCS5B01G318400 chr6A 602682600 602683422 822 False 1026.000000 1026 89.141000 2 835 1 chr6A.!!$F2 833
13 TraesCS5B01G318400 chr6A 155790413 155791151 738 False 778.000000 778 85.976000 2 746 1 chr6A.!!$F1 744
14 TraesCS5B01G318400 chr1D 38562087 38562754 667 False 935.000000 935 91.988000 2 670 1 chr1D.!!$F1 668
15 TraesCS5B01G318400 chr3B 145510623 145511300 677 False 414.500000 721 89.331000 2 835 2 chr3B.!!$F5 833
16 TraesCS5B01G318400 chr2A 557640196 557640872 676 False 418.500000 713 91.078000 2 835 2 chr2A.!!$F3 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 1.062488 AAGAGAGGCCCCACAACAGT 61.062 55.000 0.00 0.00 0.00 3.55 F
180 190 1.358152 TAGCAGCACTTAACCCCACT 58.642 50.000 0.00 0.00 0.00 4.00 F
706 731 1.604693 CGTGAACGTCTGGGCTAGTTT 60.605 52.381 0.00 0.00 34.11 2.66 F
761 786 1.755959 GGCCCATATCAATGTGCACAA 59.244 47.619 25.72 8.09 38.14 3.33 F
2693 8142 1.065709 ACGATTGTATGGGTGGGTCAC 60.066 52.381 0.00 0.00 0.00 3.67 F
4037 13133 1.360393 AAGGTGGAAAGCAGGGTGGA 61.360 55.000 0.00 0.00 0.00 4.02 F
4297 13431 0.033920 TGAGTGTCATGCGCTTGAGT 59.966 50.000 24.61 13.24 38.19 3.41 F
5434 14802 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44 F
5514 14882 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73 F
5515 14883 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24 F
5516 14884 0.115745 TGGGACGGAGGGAGTACTTT 59.884 55.000 0.00 0.00 0.00 2.66 F
7337 16995 2.346766 ACTTGAATGCCTGTGTGTGA 57.653 45.000 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1376 1480 1.940613 GCCCAAGCCAAAGTAGTATCG 59.059 52.381 0.00 0.00 0.00 2.92 R
1823 3673 3.599704 GCCATGATGCCGGAAGCC 61.600 66.667 5.05 0.00 42.71 4.35 R
2693 8142 4.327087 GCGCATTGATTTAACTCAAAAGGG 59.673 41.667 11.72 14.68 38.55 3.95 R
2815 8270 5.067273 CCTTGGTCATAACAACACTTACCA 58.933 41.667 0.00 0.00 33.87 3.25 R
4124 13220 1.663739 CTCCGGTTTCACACGAGGA 59.336 57.895 0.00 0.00 33.36 3.71 R
5495 14863 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
5496 14864 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12 R
6606 15992 0.531657 TGGCATTGAAAGCATTCCCG 59.468 50.000 0.00 0.00 34.49 5.14 R
6705 16091 2.428491 CCGGTGGCAATGTAGTTACAA 58.572 47.619 0.00 0.00 39.99 2.41 R
7111 16604 5.163088 CCCTGCCATAAACTAATACTCCCTT 60.163 44.000 0.00 0.00 0.00 3.95 R
7512 17172 9.593565 ACTATCAGTGATACTCAATCTAATCCA 57.406 33.333 8.84 0.00 35.45 3.41 R
9131 27826 0.041926 CCGTCGTTTTCGTTTCCACC 60.042 55.000 0.00 0.00 44.46 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.062488 AAGAGAGGCCCCACAACAGT 61.062 55.000 0.00 0.00 0.00 3.55
143 153 9.289303 CGGACATGTTTTAAAATAATCTTCTGG 57.711 33.333 3.52 0.00 0.00 3.86
148 158 8.201242 TGTTTTAAAATAATCTTCTGGCCCTT 57.799 30.769 0.00 0.00 0.00 3.95
171 181 5.070001 TCCTAACATGTTTTAGCAGCACTT 58.930 37.500 17.78 0.00 0.00 3.16
180 190 1.358152 TAGCAGCACTTAACCCCACT 58.642 50.000 0.00 0.00 0.00 4.00
244 261 7.564793 AGATAGGTGAACATATAGTTGTGCAA 58.435 34.615 0.00 0.00 41.51 4.08
269 286 2.408050 GATGAACTTGTGACTGCGAGT 58.592 47.619 0.00 0.00 34.74 4.18
310 327 5.168569 GCTGTAGTTACACAAGTAGCATGA 58.831 41.667 0.00 0.00 34.28 3.07
595 618 9.192642 GCAATAGTTTATTTAGGGGTTAGGAAA 57.807 33.333 0.00 0.00 0.00 3.13
683 708 8.451908 TTTTTGTCTTTTTGTTTTTGGAGGAA 57.548 26.923 0.00 0.00 0.00 3.36
687 712 4.867608 TCTTTTTGTTTTTGGAGGAAAGCG 59.132 37.500 0.00 0.00 0.00 4.68
706 731 1.604693 CGTGAACGTCTGGGCTAGTTT 60.605 52.381 0.00 0.00 34.11 2.66
719 744 8.041919 GTCTGGGCTAGTTTAAGATAGACTTTT 58.958 37.037 0.00 0.00 39.72 2.27
761 786 1.755959 GGCCCATATCAATGTGCACAA 59.244 47.619 25.72 8.09 38.14 3.33
762 787 2.481795 GGCCCATATCAATGTGCACAAC 60.482 50.000 25.72 0.00 38.14 3.32
763 788 2.481795 GCCCATATCAATGTGCACAACC 60.482 50.000 25.72 0.00 36.59 3.77
764 789 2.101249 CCCATATCAATGTGCACAACCC 59.899 50.000 25.72 0.00 0.00 4.11
766 791 3.067180 CCATATCAATGTGCACAACCCTC 59.933 47.826 25.72 0.00 0.00 4.30
767 792 2.291209 ATCAATGTGCACAACCCTCA 57.709 45.000 25.72 5.19 0.00 3.86
768 793 2.064434 TCAATGTGCACAACCCTCAA 57.936 45.000 25.72 0.00 0.00 3.02
769 794 2.382882 TCAATGTGCACAACCCTCAAA 58.617 42.857 25.72 0.00 0.00 2.69
770 795 2.762887 TCAATGTGCACAACCCTCAAAA 59.237 40.909 25.72 0.00 0.00 2.44
771 796 3.196469 TCAATGTGCACAACCCTCAAAAA 59.804 39.130 25.72 0.00 0.00 1.94
1243 1319 1.831389 CGTGCCGTTTGTGTGAGGAG 61.831 60.000 0.00 0.00 0.00 3.69
1433 1547 1.760613 CATGATTTGGGCCTTGAGCAT 59.239 47.619 4.53 2.01 46.50 3.79
1649 3499 7.707624 ACATTAAGTGTGGATTGTGATTCAT 57.292 32.000 0.00 0.00 40.28 2.57
2109 4083 8.985922 TCAGCTATATATATTTCATGCCTGAGT 58.014 33.333 0.00 0.00 31.68 3.41
2580 8019 3.454719 TTTCAGGAAATGGATCTGGCA 57.545 42.857 0.00 0.00 0.00 4.92
2693 8142 1.065709 ACGATTGTATGGGTGGGTCAC 60.066 52.381 0.00 0.00 0.00 3.67
2760 8211 3.342719 TGCATATCCGTTGTTGTGACAT 58.657 40.909 0.00 0.00 35.29 3.06
2812 8267 4.351407 TCATGTACCCTTTTCCACCACTTA 59.649 41.667 0.00 0.00 0.00 2.24
2813 8268 4.089408 TGTACCCTTTTCCACCACTTAC 57.911 45.455 0.00 0.00 0.00 2.34
2814 8269 3.717913 TGTACCCTTTTCCACCACTTACT 59.282 43.478 0.00 0.00 0.00 2.24
2815 8270 3.965470 ACCCTTTTCCACCACTTACTT 57.035 42.857 0.00 0.00 0.00 2.24
2841 8546 4.021102 AGTGTTGTTATGACCAAGGGAG 57.979 45.455 0.00 0.00 0.00 4.30
3278 8995 2.119495 ACAGTTCCCAGTCTGTTGAGT 58.881 47.619 0.00 0.00 41.33 3.41
3492 9215 4.406069 CACATCCGTGATCAATGTGTTTC 58.594 43.478 22.63 0.00 46.80 2.78
3729 12782 2.234908 AGCGTATGGAGAAAGCACTCTT 59.765 45.455 0.00 0.00 37.13 2.85
3796 12849 8.193438 GCAGAAGATAATAACAAGGCAAGAAAT 58.807 33.333 0.00 0.00 0.00 2.17
4037 13133 1.360393 AAGGTGGAAAGCAGGGTGGA 61.360 55.000 0.00 0.00 0.00 4.02
4124 13220 0.454600 CAAGCATGATTTCTGCGGCT 59.545 50.000 0.00 0.00 44.38 5.52
4297 13431 0.033920 TGAGTGTCATGCGCTTGAGT 59.966 50.000 24.61 13.24 38.19 3.41
4768 14116 6.556974 AAGGTTAGTCCCTTTAGGTGATAC 57.443 41.667 0.00 0.00 42.24 2.24
4806 14154 9.733556 TGTGATCACTACATTAACTGGTAAAAT 57.266 29.630 25.55 0.00 0.00 1.82
5422 14790 6.481434 AGGTGTCACTTACATTATACTCCC 57.519 41.667 2.35 0.00 41.10 4.30
5423 14791 6.203072 AGGTGTCACTTACATTATACTCCCT 58.797 40.000 2.35 0.00 41.10 4.20
5424 14792 6.324254 AGGTGTCACTTACATTATACTCCCTC 59.676 42.308 2.35 0.00 41.10 4.30
5425 14793 6.462628 GGTGTCACTTACATTATACTCCCTCC 60.463 46.154 2.35 0.00 41.10 4.30
5426 14794 5.301045 TGTCACTTACATTATACTCCCTCCG 59.699 44.000 0.00 0.00 31.43 4.63
5427 14795 5.301298 GTCACTTACATTATACTCCCTCCGT 59.699 44.000 0.00 0.00 0.00 4.69
5428 14796 5.533903 TCACTTACATTATACTCCCTCCGTC 59.466 44.000 0.00 0.00 0.00 4.79
5429 14797 4.831710 ACTTACATTATACTCCCTCCGTCC 59.168 45.833 0.00 0.00 0.00 4.79
5430 14798 2.606378 ACATTATACTCCCTCCGTCCC 58.394 52.381 0.00 0.00 0.00 4.46
5431 14799 2.090943 ACATTATACTCCCTCCGTCCCA 60.091 50.000 0.00 0.00 0.00 4.37
5432 14800 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
5433 14801 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
5434 14802 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
5435 14803 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5436 14804 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5437 14805 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5438 14806 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5439 14807 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5440 14808 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5441 14809 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5442 14810 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5443 14811 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5444 14812 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
5445 14813 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
5446 14814 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
5447 14815 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
5448 14816 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
5449 14817 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
5450 14818 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
5451 14819 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
5452 14820 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
5453 14821 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
5454 14822 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5455 14823 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5458 14826 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
5459 14827 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
5460 14828 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
5461 14829 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
5462 14830 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
5463 14831 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
5465 14833 7.024768 GTCTCAACTTTGTACTAGCTCTAGTG 58.975 42.308 17.32 5.17 45.25 2.74
5466 14834 5.710984 TCAACTTTGTACTAGCTCTAGTGC 58.289 41.667 17.32 16.27 45.25 4.40
5474 14842 6.969828 GTACTAGCTCTAGTGCAAATTTGT 57.030 37.500 19.03 7.59 45.25 2.83
5476 14844 6.969828 ACTAGCTCTAGTGCAAATTTGTAC 57.030 37.500 26.26 26.26 44.11 2.90
5486 14854 6.918043 GTGCAAATTTGTACTAAGCTCAAG 57.082 37.500 26.28 0.00 40.10 3.02
5487 14855 6.668323 GTGCAAATTTGTACTAAGCTCAAGA 58.332 36.000 26.28 0.00 40.10 3.02
5488 14856 6.578919 GTGCAAATTTGTACTAAGCTCAAGAC 59.421 38.462 26.28 3.82 40.10 3.01
5489 14857 6.262049 TGCAAATTTGTACTAAGCTCAAGACA 59.738 34.615 19.03 0.60 0.00 3.41
5490 14858 6.578919 GCAAATTTGTACTAAGCTCAAGACAC 59.421 38.462 19.03 2.09 0.00 3.67
5491 14859 7.520614 GCAAATTTGTACTAAGCTCAAGACACT 60.521 37.037 19.03 0.00 0.00 3.55
5492 14860 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
5493 14861 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
5494 14862 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
5495 14863 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
5496 14864 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
5497 14865 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
5498 14866 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
5499 14867 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
5500 14868 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
5501 14869 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
5502 14870 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
5503 14871 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
5504 14872 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
5505 14873 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
5506 14874 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
5507 14875 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5508 14876 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5509 14877 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
5510 14878 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
5511 14879 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5512 14880 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5513 14881 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5514 14882 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
5515 14883 0.115745 TTGGGACGGAGGGAGTACTT 59.884 55.000 0.00 0.00 0.00 2.24
5516 14884 0.115745 TGGGACGGAGGGAGTACTTT 59.884 55.000 0.00 0.00 0.00 2.66
5556 14924 5.304778 GCCCATTGTAGGACAAAAACAAAT 58.695 37.500 0.00 0.00 41.96 2.32
5825 15201 3.693085 TCTTGACTACCTAGTTACAGGCG 59.307 47.826 1.73 0.00 39.53 5.52
6084 15460 3.944087 AGTGGCCTCATTTCAGTAGTTC 58.056 45.455 3.32 0.00 0.00 3.01
6356 15738 9.740239 CATATATTTGTGTTGCATAGCTTTCTT 57.260 29.630 0.00 0.00 0.00 2.52
6444 15830 3.290948 TTGTGGCAGTTTAGTCCAGTT 57.709 42.857 0.00 0.00 0.00 3.16
6503 15889 3.993081 GCTCGAATCTGGTCAATGGATAG 59.007 47.826 0.00 0.00 0.00 2.08
6606 15992 4.737855 TGAGAATTGGTAGTCTGCCTAC 57.262 45.455 8.57 0.00 44.56 3.18
6693 16079 3.393800 ACTTATCTGACAGTGTGTGCAC 58.606 45.455 10.75 10.75 45.57 4.57
7097 16590 6.518208 AGAGTAGTGATCTAAACGCTCTTT 57.482 37.500 0.00 0.00 33.87 2.52
7111 16604 7.647907 AAACGCTCTTTAGATTTCTTTACGA 57.352 32.000 0.00 0.00 0.00 3.43
7337 16995 2.346766 ACTTGAATGCCTGTGTGTGA 57.653 45.000 0.00 0.00 0.00 3.58
7607 22371 2.478134 GCTGTGTTGTTCTGTCTAGCTG 59.522 50.000 0.00 0.00 0.00 4.24
7666 22430 3.055312 AGGACGGAGGGAGTATGTTTTTC 60.055 47.826 0.00 0.00 0.00 2.29
8361 26855 3.441222 TGAGCATTGCGACTCATTGAAAT 59.559 39.130 2.38 0.00 37.99 2.17
8492 27149 1.794714 TCTAGGATCCACTTGAGGGC 58.205 55.000 15.82 0.00 0.00 5.19
8777 27455 2.172505 TCATGATGCCGAATACCCAACT 59.827 45.455 0.00 0.00 0.00 3.16
8778 27456 2.036958 TGATGCCGAATACCCAACTG 57.963 50.000 0.00 0.00 0.00 3.16
8779 27457 1.280710 TGATGCCGAATACCCAACTGT 59.719 47.619 0.00 0.00 0.00 3.55
8780 27458 1.940613 GATGCCGAATACCCAACTGTC 59.059 52.381 0.00 0.00 0.00 3.51
8921 27607 4.465512 GCCGCTGCGTTGGATGTG 62.466 66.667 21.59 3.76 0.00 3.21
8922 27608 3.803082 CCGCTGCGTTGGATGTGG 61.803 66.667 21.59 0.00 0.00 4.17
8969 27659 4.961511 TGCGACCCGAGTGTGTGC 62.962 66.667 0.00 0.00 0.00 4.57
9052 27747 3.690460 AGCATCCAACTTTCACCTTAGG 58.310 45.455 0.00 0.00 0.00 2.69
9053 27748 2.164422 GCATCCAACTTTCACCTTAGGC 59.836 50.000 0.00 0.00 0.00 3.93
9054 27749 2.579410 TCCAACTTTCACCTTAGGCC 57.421 50.000 0.00 0.00 0.00 5.19
9055 27750 1.165270 CCAACTTTCACCTTAGGCCG 58.835 55.000 0.00 0.00 0.00 6.13
9056 27751 0.521735 CAACTTTCACCTTAGGCCGC 59.478 55.000 0.00 0.00 0.00 6.53
9057 27752 0.953960 AACTTTCACCTTAGGCCGCG 60.954 55.000 0.00 0.00 0.00 6.46
9058 27753 2.744709 TTTCACCTTAGGCCGCGC 60.745 61.111 0.00 0.00 0.00 6.86
9059 27754 3.248446 TTTCACCTTAGGCCGCGCT 62.248 57.895 5.56 0.00 0.00 5.92
9060 27755 2.741486 TTTCACCTTAGGCCGCGCTT 62.741 55.000 5.56 0.00 0.00 4.68
9061 27756 3.499737 CACCTTAGGCCGCGCTTG 61.500 66.667 5.56 0.00 0.00 4.01
9062 27757 4.778143 ACCTTAGGCCGCGCTTGG 62.778 66.667 5.56 0.18 0.00 3.61
9063 27758 4.467084 CCTTAGGCCGCGCTTGGA 62.467 66.667 5.56 0.00 0.00 3.53
9064 27759 2.435938 CTTAGGCCGCGCTTGGAA 60.436 61.111 5.56 0.00 0.00 3.53
9065 27760 1.819632 CTTAGGCCGCGCTTGGAAT 60.820 57.895 5.56 0.00 0.00 3.01
9066 27761 1.776034 CTTAGGCCGCGCTTGGAATC 61.776 60.000 5.56 0.00 0.00 2.52
9070 27765 3.864686 CCGCGCTTGGAATCGGTG 61.865 66.667 5.56 0.00 37.33 4.94
9071 27766 3.118454 CGCGCTTGGAATCGGTGT 61.118 61.111 5.56 0.00 0.00 4.16
9072 27767 1.807981 CGCGCTTGGAATCGGTGTA 60.808 57.895 5.56 0.00 0.00 2.90
9073 27768 1.355796 CGCGCTTGGAATCGGTGTAA 61.356 55.000 5.56 0.00 0.00 2.41
9074 27769 0.800012 GCGCTTGGAATCGGTGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
9075 27770 1.400494 GCGCTTGGAATCGGTGTAAAT 59.600 47.619 0.00 0.00 0.00 1.40
9076 27771 2.610374 GCGCTTGGAATCGGTGTAAATA 59.390 45.455 0.00 0.00 0.00 1.40
9077 27772 3.064271 GCGCTTGGAATCGGTGTAAATAA 59.936 43.478 0.00 0.00 0.00 1.40
9078 27773 4.437659 GCGCTTGGAATCGGTGTAAATAAA 60.438 41.667 0.00 0.00 0.00 1.40
9079 27774 5.732247 GCGCTTGGAATCGGTGTAAATAAAT 60.732 40.000 0.00 0.00 0.00 1.40
9080 27775 6.512091 GCGCTTGGAATCGGTGTAAATAAATA 60.512 38.462 0.00 0.00 0.00 1.40
9081 27776 6.849305 CGCTTGGAATCGGTGTAAATAAATAC 59.151 38.462 0.00 0.00 0.00 1.89
9082 27777 7.466185 CGCTTGGAATCGGTGTAAATAAATACA 60.466 37.037 0.00 0.00 33.52 2.29
9083 27778 7.855904 GCTTGGAATCGGTGTAAATAAATACAG 59.144 37.037 0.00 0.00 36.51 2.74
9084 27779 7.795482 TGGAATCGGTGTAAATAAATACAGG 57.205 36.000 0.00 0.00 36.51 4.00
9085 27780 7.340256 TGGAATCGGTGTAAATAAATACAGGT 58.660 34.615 0.00 0.00 36.51 4.00
9086 27781 7.281324 TGGAATCGGTGTAAATAAATACAGGTG 59.719 37.037 0.00 0.00 36.51 4.00
9087 27782 7.281549 GGAATCGGTGTAAATAAATACAGGTGT 59.718 37.037 0.00 0.00 36.51 4.16
9088 27783 9.316730 GAATCGGTGTAAATAAATACAGGTGTA 57.683 33.333 0.00 0.00 36.51 2.90
9089 27784 9.841295 AATCGGTGTAAATAAATACAGGTGTAT 57.159 29.630 0.00 0.00 42.60 2.29
9103 27798 6.780706 ACAGGTGTATTTTTCTTACGAGTG 57.219 37.500 0.00 0.00 0.00 3.51
9104 27799 6.285990 ACAGGTGTATTTTTCTTACGAGTGT 58.714 36.000 0.00 0.00 0.00 3.55
9105 27800 7.436118 ACAGGTGTATTTTTCTTACGAGTGTA 58.564 34.615 0.00 0.00 0.00 2.90
9106 27801 8.092687 ACAGGTGTATTTTTCTTACGAGTGTAT 58.907 33.333 0.00 0.00 0.00 2.29
9107 27802 8.592998 CAGGTGTATTTTTCTTACGAGTGTATC 58.407 37.037 0.00 0.00 0.00 2.24
9108 27803 8.529476 AGGTGTATTTTTCTTACGAGTGTATCT 58.471 33.333 0.00 0.00 0.00 1.98
9109 27804 9.148104 GGTGTATTTTTCTTACGAGTGTATCTT 57.852 33.333 0.00 0.00 0.00 2.40
9113 27808 7.801547 TTTTTCTTACGAGTGTATCTTACCG 57.198 36.000 0.00 0.00 0.00 4.02
9114 27809 5.490139 TTCTTACGAGTGTATCTTACCGG 57.510 43.478 0.00 0.00 0.00 5.28
9115 27810 3.313526 TCTTACGAGTGTATCTTACCGGC 59.686 47.826 0.00 0.00 0.00 6.13
9116 27811 0.743097 ACGAGTGTATCTTACCGGCC 59.257 55.000 0.00 0.00 0.00 6.13
9117 27812 0.742505 CGAGTGTATCTTACCGGCCA 59.257 55.000 0.00 0.00 0.00 5.36
9118 27813 1.269102 CGAGTGTATCTTACCGGCCAG 60.269 57.143 0.00 0.00 0.00 4.85
9119 27814 1.755380 GAGTGTATCTTACCGGCCAGT 59.245 52.381 0.00 0.00 0.00 4.00
9120 27815 2.954318 GAGTGTATCTTACCGGCCAGTA 59.046 50.000 0.00 0.00 0.00 2.74
9121 27816 2.957006 AGTGTATCTTACCGGCCAGTAG 59.043 50.000 0.00 0.00 0.00 2.57
9122 27817 2.692041 GTGTATCTTACCGGCCAGTAGT 59.308 50.000 0.00 0.00 0.00 2.73
9123 27818 2.691526 TGTATCTTACCGGCCAGTAGTG 59.308 50.000 0.00 0.00 0.00 2.74
9124 27819 2.154567 ATCTTACCGGCCAGTAGTGA 57.845 50.000 0.00 4.99 0.00 3.41
9125 27820 2.154567 TCTTACCGGCCAGTAGTGAT 57.845 50.000 0.00 0.00 0.00 3.06
9126 27821 2.463752 TCTTACCGGCCAGTAGTGATT 58.536 47.619 0.00 0.00 0.00 2.57
9127 27822 2.835764 TCTTACCGGCCAGTAGTGATTT 59.164 45.455 0.00 0.00 0.00 2.17
9128 27823 2.684001 TACCGGCCAGTAGTGATTTG 57.316 50.000 0.00 0.00 0.00 2.32
9129 27824 0.676782 ACCGGCCAGTAGTGATTTGC 60.677 55.000 0.00 0.00 0.00 3.68
9130 27825 0.676466 CCGGCCAGTAGTGATTTGCA 60.676 55.000 2.24 0.00 0.00 4.08
9131 27826 0.729116 CGGCCAGTAGTGATTTGCAG 59.271 55.000 2.24 0.00 0.00 4.41
9132 27827 1.098050 GGCCAGTAGTGATTTGCAGG 58.902 55.000 0.00 0.00 0.00 4.85
9133 27828 1.614317 GGCCAGTAGTGATTTGCAGGT 60.614 52.381 0.00 0.00 0.00 4.00
9134 27829 1.470098 GCCAGTAGTGATTTGCAGGTG 59.530 52.381 0.00 0.00 0.00 4.00
9135 27830 2.086869 CCAGTAGTGATTTGCAGGTGG 58.913 52.381 0.00 0.00 0.00 4.61
9136 27831 2.290260 CCAGTAGTGATTTGCAGGTGGA 60.290 50.000 0.00 0.00 0.00 4.02
9137 27832 3.411446 CAGTAGTGATTTGCAGGTGGAA 58.589 45.455 0.00 0.00 0.00 3.53
9138 27833 3.820467 CAGTAGTGATTTGCAGGTGGAAA 59.180 43.478 0.00 0.00 39.60 3.13
9139 27834 3.821033 AGTAGTGATTTGCAGGTGGAAAC 59.179 43.478 0.00 0.00 38.15 2.78
9140 27835 1.608590 AGTGATTTGCAGGTGGAAACG 59.391 47.619 0.00 0.00 38.15 3.60
9141 27836 1.606668 GTGATTTGCAGGTGGAAACGA 59.393 47.619 0.00 0.00 38.15 3.85
9142 27837 2.034053 GTGATTTGCAGGTGGAAACGAA 59.966 45.455 0.00 0.00 38.15 3.85
9143 27838 2.690497 TGATTTGCAGGTGGAAACGAAA 59.310 40.909 0.00 0.00 38.15 3.46
9144 27839 3.131223 TGATTTGCAGGTGGAAACGAAAA 59.869 39.130 0.00 0.00 38.15 2.29
9145 27840 2.570442 TTGCAGGTGGAAACGAAAAC 57.430 45.000 0.00 0.00 0.00 2.43
9146 27841 0.378962 TGCAGGTGGAAACGAAAACG 59.621 50.000 0.00 0.00 0.00 3.60
9147 27842 0.658897 GCAGGTGGAAACGAAAACGA 59.341 50.000 0.00 0.00 0.00 3.85
9148 27843 1.596220 GCAGGTGGAAACGAAAACGAC 60.596 52.381 0.00 0.00 0.00 4.34
9149 27844 0.932399 AGGTGGAAACGAAAACGACG 59.068 50.000 0.00 0.00 0.00 5.12
9150 27845 0.041926 GGTGGAAACGAAAACGACGG 60.042 55.000 0.00 0.00 34.93 4.79
9151 27846 0.655337 GTGGAAACGAAAACGACGGC 60.655 55.000 0.00 0.00 34.93 5.68
9152 27847 1.082561 GGAAACGAAAACGACGGCC 60.083 57.895 0.00 0.00 34.93 6.13
9153 27848 1.437573 GAAACGAAAACGACGGCCG 60.438 57.895 26.86 26.86 45.44 6.13
9154 27849 2.753237 GAAACGAAAACGACGGCCGG 62.753 60.000 31.76 15.62 43.93 6.13
9155 27850 4.590522 ACGAAAACGACGGCCGGT 62.591 61.111 31.76 16.40 43.93 5.28
9156 27851 4.067016 CGAAAACGACGGCCGGTG 62.067 66.667 31.76 23.31 43.93 4.94
9157 27852 3.719144 GAAAACGACGGCCGGTGG 61.719 66.667 31.76 19.97 43.93 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.899019 GGCCTCTCTTTCTTCCTCGT 59.101 55.000 0.00 0.00 0.00 4.18
29 30 2.678934 AAGCCTGGTCGTCGCCTA 60.679 61.111 0.00 0.00 0.00 3.93
72 74 1.684049 CTCCTTGCTCCTCCCTCGT 60.684 63.158 0.00 0.00 0.00 4.18
143 153 3.761752 TGCTAAAACATGTTAGGAAGGGC 59.238 43.478 12.39 9.90 32.62 5.19
148 158 4.651778 AGTGCTGCTAAAACATGTTAGGA 58.348 39.130 12.39 6.95 32.62 2.94
184 194 5.594926 CAATGAGGGCAGTGGAATTATTTC 58.405 41.667 0.00 0.00 36.51 2.17
203 213 5.954296 CCTATCTTTCATAGGTGCCAATG 57.046 43.478 0.10 0.00 37.08 2.82
244 261 2.868044 GCAGTCACAAGTTCATCGGTCT 60.868 50.000 0.00 0.00 0.00 3.85
269 286 1.447663 CATGTCCACCGATCGCACA 60.448 57.895 10.32 9.53 0.00 4.57
424 446 7.601130 TGAACTCATATTAGCTAACACGTTTGT 59.399 33.333 8.70 0.00 37.67 2.83
670 695 2.370349 TCACGCTTTCCTCCAAAAACA 58.630 42.857 0.00 0.00 0.00 2.83
671 696 3.113322 GTTCACGCTTTCCTCCAAAAAC 58.887 45.455 0.00 0.00 0.00 2.43
672 697 2.223386 CGTTCACGCTTTCCTCCAAAAA 60.223 45.455 0.00 0.00 0.00 1.94
673 698 1.332375 CGTTCACGCTTTCCTCCAAAA 59.668 47.619 0.00 0.00 0.00 2.44
674 699 0.941542 CGTTCACGCTTTCCTCCAAA 59.058 50.000 0.00 0.00 0.00 3.28
676 701 0.599204 GACGTTCACGCTTTCCTCCA 60.599 55.000 0.00 0.00 44.43 3.86
677 702 0.319641 AGACGTTCACGCTTTCCTCC 60.320 55.000 0.00 0.00 44.43 4.30
678 703 0.784778 CAGACGTTCACGCTTTCCTC 59.215 55.000 0.00 0.00 44.43 3.71
679 704 0.600255 CCAGACGTTCACGCTTTCCT 60.600 55.000 0.00 0.00 44.43 3.36
680 705 1.566018 CCCAGACGTTCACGCTTTCC 61.566 60.000 0.00 0.00 44.43 3.13
681 706 1.860078 CCCAGACGTTCACGCTTTC 59.140 57.895 0.00 0.00 44.43 2.62
682 707 2.251642 GCCCAGACGTTCACGCTTT 61.252 57.895 0.00 0.00 44.43 3.51
683 708 1.812686 TAGCCCAGACGTTCACGCTT 61.813 55.000 0.00 0.00 44.43 4.68
687 712 2.165319 AAACTAGCCCAGACGTTCAC 57.835 50.000 0.00 0.00 0.00 3.18
706 731 6.023603 ACCTCCTGACCAAAAGTCTATCTTA 58.976 40.000 0.00 0.00 46.46 2.10
782 807 2.032981 CAGAGTGCCGTGCCTTTTT 58.967 52.632 0.00 0.00 0.00 1.94
783 808 2.555547 GCAGAGTGCCGTGCCTTTT 61.556 57.895 0.00 0.00 37.42 2.27
784 809 2.980233 GCAGAGTGCCGTGCCTTT 60.980 61.111 0.00 0.00 37.42 3.11
810 835 4.514577 CCTCTACCGTGCCGCTGG 62.515 72.222 1.19 1.19 0.00 4.85
811 836 3.417275 CTCCTCTACCGTGCCGCTG 62.417 68.421 0.00 0.00 0.00 5.18
812 837 3.141488 CTCCTCTACCGTGCCGCT 61.141 66.667 0.00 0.00 0.00 5.52
857 882 0.109532 GGAAGGGGATTAGAGCAGGC 59.890 60.000 0.00 0.00 0.00 4.85
1191 1263 2.036098 TACGCGAGACTTGGGGGA 59.964 61.111 15.93 0.00 0.00 4.81
1376 1480 1.940613 GCCCAAGCCAAAGTAGTATCG 59.059 52.381 0.00 0.00 0.00 2.92
1433 1547 6.631107 ACTCTAGATTAGCCCCCATAAACTA 58.369 40.000 0.00 0.00 0.00 2.24
1510 1624 6.548321 TGTCAACAAAGGGGAACATAGTAAT 58.452 36.000 0.00 0.00 0.00 1.89
1649 3499 8.799367 TCAAATGTACTACTAGAGCTGTAAACA 58.201 33.333 0.00 0.00 0.00 2.83
1823 3673 3.599704 GCCATGATGCCGGAAGCC 61.600 66.667 5.05 0.00 42.71 4.35
2626 8065 6.828273 TGCAAATATAGAACTTGGTGCAGTAT 59.172 34.615 0.00 0.00 35.93 2.12
2693 8142 4.327087 GCGCATTGATTTAACTCAAAAGGG 59.673 41.667 11.72 14.68 38.55 3.95
2812 8267 5.686753 TGGTCATAACAACACTTACCAAGT 58.313 37.500 0.00 0.00 44.06 3.16
2813 8268 6.627395 TTGGTCATAACAACACTTACCAAG 57.373 37.500 0.00 0.00 39.81 3.61
2814 8269 5.533154 CCTTGGTCATAACAACACTTACCAA 59.467 40.000 0.00 0.00 41.80 3.67
2815 8270 5.067273 CCTTGGTCATAACAACACTTACCA 58.933 41.667 0.00 0.00 33.87 3.25
2953 8659 6.238211 GCGTCTCATATTTGACACTAGCATTT 60.238 38.462 0.00 0.00 33.18 2.32
2977 8683 5.567138 AAACTGGTCTATATGCAGTTTGC 57.433 39.130 1.08 0.00 42.32 3.68
3278 8995 8.967664 AGGGTAAGTAAAATGTGCGATATAAA 57.032 30.769 0.00 0.00 0.00 1.40
3414 9136 6.716628 TCTGATTTATCTGTTTTGCCAAGTCT 59.283 34.615 0.00 0.00 0.00 3.24
3635 12688 2.561569 ACACATGCCTAAGGATAACGC 58.438 47.619 0.00 0.00 0.00 4.84
3729 12782 6.067350 TCTGCTTCAGCTCTATCAGAATCTA 58.933 40.000 0.00 0.00 42.66 1.98
3796 12849 6.436027 ACAAGAGTCCCATACTATGAGAGAA 58.564 40.000 0.00 0.00 39.07 2.87
4037 13133 5.659440 TTTTGAGCTTTTTGTTCAGAGGT 57.341 34.783 0.00 0.00 37.22 3.85
4124 13220 1.663739 CTCCGGTTTCACACGAGGA 59.336 57.895 0.00 0.00 33.36 3.71
4297 13431 6.433093 GCCTTTATTTTAGGTTCCAAGTCAGA 59.567 38.462 0.00 0.00 35.13 3.27
4768 14116 7.425577 TGTAGTGATCACATGAGAAACAAAG 57.574 36.000 27.02 0.00 0.00 2.77
4806 14154 5.511363 TCCCAAACCTAGTGAACAAGAAAA 58.489 37.500 0.00 0.00 0.00 2.29
5189 14544 7.487189 CAGCAAATACCATCAAGAATTCAAGAC 59.513 37.037 8.44 0.00 0.00 3.01
5420 14788 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
5421 14789 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
5422 14790 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
5423 14791 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
5424 14792 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
5425 14793 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
5426 14794 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
5427 14795 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
5428 14796 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
5429 14797 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
5432 14800 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
5433 14801 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
5434 14802 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
5435 14803 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
5436 14804 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
5437 14805 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
5438 14806 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
5439 14807 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
5440 14808 7.024768 CACTAGAGCTAGTACAAAGTTGAGAC 58.975 42.308 9.66 0.00 43.98 3.36
5441 14809 6.349445 GCACTAGAGCTAGTACAAAGTTGAGA 60.349 42.308 9.66 0.00 43.98 3.27
5442 14810 5.802956 GCACTAGAGCTAGTACAAAGTTGAG 59.197 44.000 9.66 0.00 43.98 3.02
5443 14811 5.243060 TGCACTAGAGCTAGTACAAAGTTGA 59.757 40.000 13.47 0.00 43.98 3.18
5444 14812 5.470368 TGCACTAGAGCTAGTACAAAGTTG 58.530 41.667 13.47 0.00 43.98 3.16
5445 14813 5.723672 TGCACTAGAGCTAGTACAAAGTT 57.276 39.130 13.47 0.00 43.98 2.66
5446 14814 5.723672 TTGCACTAGAGCTAGTACAAAGT 57.276 39.130 16.89 0.00 42.94 2.66
5449 14817 6.934645 ACAAATTTGCACTAGAGCTAGTACAA 59.065 34.615 18.12 15.78 43.71 2.41
5450 14818 6.464222 ACAAATTTGCACTAGAGCTAGTACA 58.536 36.000 18.12 8.00 43.98 2.90
5451 14819 6.969828 ACAAATTTGCACTAGAGCTAGTAC 57.030 37.500 18.12 5.52 43.98 2.73
5452 14820 7.837863 AGTACAAATTTGCACTAGAGCTAGTA 58.162 34.615 20.24 2.25 43.98 1.82
5453 14821 6.702329 AGTACAAATTTGCACTAGAGCTAGT 58.298 36.000 20.24 4.38 46.52 2.57
5454 14822 8.703604 TTAGTACAAATTTGCACTAGAGCTAG 57.296 34.615 23.76 3.06 38.06 3.42
5455 14823 7.277981 GCTTAGTACAAATTTGCACTAGAGCTA 59.722 37.037 30.05 19.01 38.06 3.32
5456 14824 6.092807 GCTTAGTACAAATTTGCACTAGAGCT 59.907 38.462 30.05 15.25 38.06 4.09
5457 14825 6.092807 AGCTTAGTACAAATTTGCACTAGAGC 59.907 38.462 30.12 30.12 38.06 4.09
5458 14826 7.331934 TGAGCTTAGTACAAATTTGCACTAGAG 59.668 37.037 23.76 22.48 38.06 2.43
5459 14827 7.158697 TGAGCTTAGTACAAATTTGCACTAGA 58.841 34.615 23.76 16.48 38.06 2.43
5460 14828 7.364522 TGAGCTTAGTACAAATTTGCACTAG 57.635 36.000 23.76 19.51 38.06 2.57
5461 14829 7.659799 TCTTGAGCTTAGTACAAATTTGCACTA 59.340 33.333 22.09 22.09 36.29 2.74
5462 14830 6.486657 TCTTGAGCTTAGTACAAATTTGCACT 59.513 34.615 23.90 23.90 38.32 4.40
5463 14831 6.578919 GTCTTGAGCTTAGTACAAATTTGCAC 59.421 38.462 18.12 15.33 0.00 4.57
5464 14832 6.262049 TGTCTTGAGCTTAGTACAAATTTGCA 59.738 34.615 18.12 2.00 0.00 4.08
5465 14833 6.578919 GTGTCTTGAGCTTAGTACAAATTTGC 59.421 38.462 18.12 2.93 0.00 3.68
5466 14834 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
5467 14835 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
5468 14836 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
5469 14837 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
5470 14838 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
5471 14839 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
5472 14840 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
5473 14841 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
5474 14842 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
5475 14843 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
5476 14844 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
5477 14845 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
5478 14846 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
5479 14847 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
5480 14848 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
5481 14849 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
5482 14850 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
5483 14851 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
5484 14852 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
5485 14853 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
5486 14854 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
5487 14855 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
5488 14856 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
5489 14857 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
5490 14858 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
5491 14859 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
5492 14860 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5493 14861 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5494 14862 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5495 14863 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5496 14864 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
5497 14865 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
5498 14866 1.273759 AAAAGTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
5533 14901 4.329462 TTGTTTTTGTCCTACAATGGGC 57.671 40.909 0.00 0.00 38.00 5.36
6503 15889 4.499696 CCATTATCCGCAAAGGTTGGATTC 60.500 45.833 0.00 0.00 42.39 2.52
6606 15992 0.531657 TGGCATTGAAAGCATTCCCG 59.468 50.000 0.00 0.00 34.49 5.14
6693 16079 7.220683 GCAATGTAGTTACAATTTACATGCCAG 59.779 37.037 0.00 0.00 39.99 4.85
6705 16091 2.428491 CCGGTGGCAATGTAGTTACAA 58.572 47.619 0.00 0.00 39.99 2.41
7111 16604 5.163088 CCCTGCCATAAACTAATACTCCCTT 60.163 44.000 0.00 0.00 0.00 3.95
7512 17172 9.593565 ACTATCAGTGATACTCAATCTAATCCA 57.406 33.333 8.84 0.00 35.45 3.41
7583 22347 3.499918 GCTAGACAGAACAACACAGCATT 59.500 43.478 0.00 0.00 0.00 3.56
7607 22371 3.070018 AGAACAACACAGCATGACTAGC 58.930 45.455 0.00 0.00 39.69 3.42
7666 22430 7.337942 AGGTAATCATGCTTCTCCAAAAACTAG 59.662 37.037 6.32 0.00 0.00 2.57
8122 26552 4.834496 AGATGCAAACAAAAGATTCCTCCA 59.166 37.500 0.00 0.00 0.00 3.86
8297 26731 5.784390 ACCCTACCTAGTCGATCATAGAGTA 59.216 44.000 0.00 0.00 0.00 2.59
8361 26855 6.384258 AATGTTACAACAGCAATACACACA 57.616 33.333 0.84 0.00 43.04 3.72
8492 27149 7.362056 CCCTACACCAAGATATTGTGAAAACAG 60.362 40.741 0.00 0.00 0.00 3.16
8575 27243 3.535561 CACTCAACTCAAGACACAGGTT 58.464 45.455 0.00 0.00 0.00 3.50
8739 27408 7.223387 GGCATCATGAAGAAATCAACATTTACC 59.777 37.037 0.00 0.00 42.54 2.85
8921 27607 1.739466 TCACGCATCATTTCAGCTTCC 59.261 47.619 0.00 0.00 0.00 3.46
8922 27608 2.160219 TGTCACGCATCATTTCAGCTTC 59.840 45.455 0.00 0.00 0.00 3.86
9054 27749 1.355796 TTACACCGATTCCAAGCGCG 61.356 55.000 0.00 0.00 36.32 6.86
9055 27750 0.800012 TTTACACCGATTCCAAGCGC 59.200 50.000 0.00 0.00 36.32 5.92
9056 27751 4.868450 TTATTTACACCGATTCCAAGCG 57.132 40.909 0.00 0.00 37.59 4.68
9057 27752 7.699566 TGTATTTATTTACACCGATTCCAAGC 58.300 34.615 0.00 0.00 0.00 4.01
9058 27753 8.342634 CCTGTATTTATTTACACCGATTCCAAG 58.657 37.037 0.00 0.00 0.00 3.61
9059 27754 7.830201 ACCTGTATTTATTTACACCGATTCCAA 59.170 33.333 0.00 0.00 0.00 3.53
9060 27755 7.281324 CACCTGTATTTATTTACACCGATTCCA 59.719 37.037 0.00 0.00 0.00 3.53
9061 27756 7.281549 ACACCTGTATTTATTTACACCGATTCC 59.718 37.037 0.00 0.00 0.00 3.01
9062 27757 8.205131 ACACCTGTATTTATTTACACCGATTC 57.795 34.615 0.00 0.00 0.00 2.52
9063 27758 9.841295 ATACACCTGTATTTATTTACACCGATT 57.159 29.630 0.00 0.00 37.97 3.34
9064 27759 9.841295 AATACACCTGTATTTATTTACACCGAT 57.159 29.630 5.06 0.00 45.90 4.18
9094 27789 3.549625 GGCCGGTAAGATACACTCGTAAG 60.550 52.174 1.90 0.00 0.00 2.34
9095 27790 2.358898 GGCCGGTAAGATACACTCGTAA 59.641 50.000 1.90 0.00 0.00 3.18
9096 27791 1.949525 GGCCGGTAAGATACACTCGTA 59.050 52.381 1.90 0.00 0.00 3.43
9097 27792 0.743097 GGCCGGTAAGATACACTCGT 59.257 55.000 1.90 0.00 0.00 4.18
9098 27793 0.742505 TGGCCGGTAAGATACACTCG 59.257 55.000 1.90 0.00 0.00 4.18
9099 27794 1.755380 ACTGGCCGGTAAGATACACTC 59.245 52.381 18.00 0.00 0.00 3.51
9100 27795 1.861982 ACTGGCCGGTAAGATACACT 58.138 50.000 18.00 0.00 0.00 3.55
9101 27796 2.692041 ACTACTGGCCGGTAAGATACAC 59.308 50.000 24.58 0.00 0.00 2.90
9102 27797 2.691526 CACTACTGGCCGGTAAGATACA 59.308 50.000 24.58 3.30 0.00 2.29
9103 27798 2.954318 TCACTACTGGCCGGTAAGATAC 59.046 50.000 24.58 0.00 0.00 2.24
9104 27799 3.301794 TCACTACTGGCCGGTAAGATA 57.698 47.619 24.58 4.86 0.00 1.98
9105 27800 2.154567 TCACTACTGGCCGGTAAGAT 57.845 50.000 24.58 10.97 0.00 2.40
9106 27801 2.154567 ATCACTACTGGCCGGTAAGA 57.845 50.000 24.58 23.21 0.00 2.10
9107 27802 2.936498 CAAATCACTACTGGCCGGTAAG 59.064 50.000 24.58 19.17 0.00 2.34
9108 27803 2.937873 GCAAATCACTACTGGCCGGTAA 60.938 50.000 24.58 11.32 0.00 2.85
9109 27804 1.406341 GCAAATCACTACTGGCCGGTA 60.406 52.381 23.20 23.20 0.00 4.02
9110 27805 0.676782 GCAAATCACTACTGGCCGGT 60.677 55.000 23.52 23.52 0.00 5.28
9111 27806 0.676466 TGCAAATCACTACTGGCCGG 60.676 55.000 11.02 11.02 0.00 6.13
9112 27807 0.729116 CTGCAAATCACTACTGGCCG 59.271 55.000 0.00 0.00 0.00 6.13
9113 27808 1.098050 CCTGCAAATCACTACTGGCC 58.902 55.000 0.00 0.00 0.00 5.36
9114 27809 1.470098 CACCTGCAAATCACTACTGGC 59.530 52.381 0.00 0.00 0.00 4.85
9115 27810 2.086869 CCACCTGCAAATCACTACTGG 58.913 52.381 0.00 0.00 0.00 4.00
9116 27811 3.057969 TCCACCTGCAAATCACTACTG 57.942 47.619 0.00 0.00 0.00 2.74
9117 27812 3.788227 TTCCACCTGCAAATCACTACT 57.212 42.857 0.00 0.00 0.00 2.57
9118 27813 3.364964 CGTTTCCACCTGCAAATCACTAC 60.365 47.826 0.00 0.00 0.00 2.73
9119 27814 2.811431 CGTTTCCACCTGCAAATCACTA 59.189 45.455 0.00 0.00 0.00 2.74
9120 27815 1.608590 CGTTTCCACCTGCAAATCACT 59.391 47.619 0.00 0.00 0.00 3.41
9121 27816 1.606668 TCGTTTCCACCTGCAAATCAC 59.393 47.619 0.00 0.00 0.00 3.06
9122 27817 1.974265 TCGTTTCCACCTGCAAATCA 58.026 45.000 0.00 0.00 0.00 2.57
9123 27818 3.363341 TTTCGTTTCCACCTGCAAATC 57.637 42.857 0.00 0.00 0.00 2.17
9124 27819 3.453424 GTTTTCGTTTCCACCTGCAAAT 58.547 40.909 0.00 0.00 0.00 2.32
9125 27820 2.732597 CGTTTTCGTTTCCACCTGCAAA 60.733 45.455 0.00 0.00 38.65 3.68
9126 27821 1.202200 CGTTTTCGTTTCCACCTGCAA 60.202 47.619 0.00 0.00 38.65 4.08
9127 27822 0.378962 CGTTTTCGTTTCCACCTGCA 59.621 50.000 0.00 0.00 38.65 4.41
9128 27823 0.658897 TCGTTTTCGTTTCCACCTGC 59.341 50.000 0.00 0.00 44.46 4.85
9129 27824 1.332552 CGTCGTTTTCGTTTCCACCTG 60.333 52.381 0.00 0.00 44.46 4.00
9130 27825 0.932399 CGTCGTTTTCGTTTCCACCT 59.068 50.000 0.00 0.00 44.46 4.00
9131 27826 0.041926 CCGTCGTTTTCGTTTCCACC 60.042 55.000 0.00 0.00 44.46 4.61
9132 27827 0.655337 GCCGTCGTTTTCGTTTCCAC 60.655 55.000 0.00 0.00 44.46 4.02
9133 27828 1.642753 GCCGTCGTTTTCGTTTCCA 59.357 52.632 0.00 0.00 44.46 3.53
9134 27829 1.082561 GGCCGTCGTTTTCGTTTCC 60.083 57.895 0.00 0.00 44.46 3.13
9135 27830 1.437573 CGGCCGTCGTTTTCGTTTC 60.438 57.895 19.50 0.00 44.46 2.78
9136 27831 2.627555 CGGCCGTCGTTTTCGTTT 59.372 55.556 19.50 0.00 44.46 3.60
9137 27832 3.340253 CCGGCCGTCGTTTTCGTT 61.340 61.111 26.12 0.00 44.46 3.85
9138 27833 4.590522 ACCGGCCGTCGTTTTCGT 62.591 61.111 26.12 9.18 44.46 3.85
9139 27834 4.067016 CACCGGCCGTCGTTTTCG 62.067 66.667 26.12 8.44 45.64 3.46
9140 27835 3.719144 CCACCGGCCGTCGTTTTC 61.719 66.667 26.12 0.00 37.11 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.