Multiple sequence alignment - TraesCS5B01G317900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G317900 chr5B 100.000 5560 0 0 1 5560 502029123 502023564 0.000000e+00 10268.0
1 TraesCS5B01G317900 chr5B 99.346 153 1 0 1927 2079 511066972 511067124 1.530000e-70 278.0
2 TraesCS5B01G317900 chr5B 92.994 157 10 1 4822 4978 395709924 395709769 1.560000e-55 228.0
3 TraesCS5B01G317900 chr5A 96.343 2762 72 5 2080 4818 528275279 528272524 0.000000e+00 4514.0
4 TraesCS5B01G317900 chr5A 88.627 1952 82 30 46 1929 528277150 528275271 0.000000e+00 2246.0
5 TraesCS5B01G317900 chr5A 88.329 694 58 7 4130 4818 37084898 37084223 0.000000e+00 811.0
6 TraesCS5B01G317900 chr5A 91.637 562 41 4 4994 5552 528272519 528271961 0.000000e+00 773.0
7 TraesCS5B01G317900 chr5A 100.000 150 0 0 1930 2079 575593931 575594080 1.530000e-70 278.0
8 TraesCS5B01G317900 chr5A 92.029 138 11 0 3398 3535 37085026 37084889 1.580000e-45 195.0
9 TraesCS5B01G317900 chr5A 90.805 87 8 0 1481 1567 528275632 528275546 3.520000e-22 117.0
10 TraesCS5B01G317900 chr5A 100.000 28 0 0 1629 1656 528275658 528275631 1.000000e-02 52.8
11 TraesCS5B01G317900 chr5D 97.601 1459 32 1 3363 4818 415648597 415647139 0.000000e+00 2497.0
12 TraesCS5B01G317900 chr5D 88.294 2016 92 35 1 1929 415651902 415649944 0.000000e+00 2283.0
13 TraesCS5B01G317900 chr5D 95.272 1269 35 4 2080 3325 415649952 415648686 0.000000e+00 1988.0
14 TraesCS5B01G317900 chr5D 97.270 586 11 2 4975 5560 415647142 415646562 0.000000e+00 989.0
15 TraesCS5B01G317900 chr5D 90.360 695 61 3 4130 4818 46076335 46075641 0.000000e+00 907.0
16 TraesCS5B01G317900 chr5D 96.571 175 6 0 2244 2418 295930142 295930316 1.960000e-74 291.0
17 TraesCS5B01G317900 chr5D 91.729 133 11 0 3403 3535 46076458 46076326 9.510000e-43 185.0
18 TraesCS5B01G317900 chr5D 100.000 28 0 0 1629 1656 415650331 415650304 1.000000e-02 52.8
19 TraesCS5B01G317900 chr3B 87.464 702 49 6 29 706 47169422 47168736 0.000000e+00 773.0
20 TraesCS5B01G317900 chr6B 100.000 154 0 0 1928 2081 585570205 585570358 9.120000e-73 285.0
21 TraesCS5B01G317900 chr2B 98.148 162 3 0 4817 4978 45733662 45733501 3.280000e-72 283.0
22 TraesCS5B01G317900 chr2B 84.472 161 11 5 237 384 759190365 759190206 4.490000e-31 147.0
23 TraesCS5B01G317900 chr7A 100.000 152 0 0 1930 2081 161728484 161728333 1.180000e-71 281.0
24 TraesCS5B01G317900 chr2D 99.351 154 1 0 1930 2083 357696997 357697150 4.240000e-71 279.0
25 TraesCS5B01G317900 chr2D 100.000 150 0 0 1930 2079 377155890 377156039 1.530000e-70 278.0
26 TraesCS5B01G317900 chr2D 94.268 157 9 0 4822 4978 362930813 362930969 2.000000e-59 241.0
27 TraesCS5B01G317900 chr2D 90.000 180 16 2 4813 4991 520539239 520539417 1.200000e-56 231.0
28 TraesCS5B01G317900 chr7B 100.000 150 0 0 1930 2079 664317035 664317184 1.530000e-70 278.0
29 TraesCS5B01G317900 chr6A 100.000 150 0 0 1930 2079 80819964 80820113 1.530000e-70 278.0
30 TraesCS5B01G317900 chr3A 100.000 150 0 0 1930 2079 637291923 637292072 1.530000e-70 278.0
31 TraesCS5B01G317900 chr3A 93.711 159 10 0 4822 4980 648037442 648037284 7.200000e-59 239.0
32 TraesCS5B01G317900 chr1B 94.268 157 9 0 4822 4978 24349057 24349213 2.000000e-59 241.0
33 TraesCS5B01G317900 chr4B 93.631 157 10 0 4822 4978 446769267 446769111 9.310000e-58 235.0
34 TraesCS5B01G317900 chr4A 92.638 163 12 0 4816 4978 517406470 517406632 9.310000e-58 235.0
35 TraesCS5B01G317900 chr1D 92.638 163 12 0 4816 4978 463381904 463382066 9.310000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G317900 chr5B 502023564 502029123 5559 True 10268.00 10268 100.0000 1 5560 1 chr5B.!!$R2 5559
1 TraesCS5B01G317900 chr5A 528271961 528277150 5189 True 1540.56 4514 93.4824 46 5552 5 chr5A.!!$R2 5506
2 TraesCS5B01G317900 chr5A 37084223 37085026 803 True 503.00 811 90.1790 3398 4818 2 chr5A.!!$R1 1420
3 TraesCS5B01G317900 chr5D 415646562 415651902 5340 True 1561.96 2497 95.6874 1 5560 5 chr5D.!!$R2 5559
4 TraesCS5B01G317900 chr5D 46075641 46076458 817 True 546.00 907 91.0445 3403 4818 2 chr5D.!!$R1 1415
5 TraesCS5B01G317900 chr3B 47168736 47169422 686 True 773.00 773 87.4640 29 706 1 chr3B.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
206 213 0.540597 GAAGGGGCAGTTCTGGCTTT 60.541 55.0 21.98 17.03 34.52 3.51 F
1983 2089 0.103208 AACTGCACGATCGAGGGATC 59.897 55.0 24.34 1.28 44.63 3.36 F
2039 2145 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.0 0.00 0.00 0.00 5.34 F
2054 2160 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.0 18.64 0.00 0.00 2.93 F
2080 2186 0.543749 GTCCCCATAGCACTGCTCTT 59.456 55.0 6.86 0.00 40.44 2.85 F
3853 4034 0.755079 TCAGCTGATATTGAGGCGCT 59.245 50.0 13.74 0.00 0.00 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2020 2126 0.096454 GCACGACGGTTAAATCCAGC 59.904 55.000 0.00 0.00 0.00 4.85 R
3270 3400 0.532862 CCTACACCCATGCGACCATC 60.533 60.000 0.00 0.00 0.00 3.51 R
3408 3589 3.053619 GGGTCAATCTAAACCATGGGAGT 60.054 47.826 18.09 2.79 37.28 3.85 R
3912 4093 3.324846 ACAGCTGGTACTTCATTCTGACA 59.675 43.478 19.93 0.00 0.00 3.58 R
4242 4423 3.581332 TCTGGAGATTTTGGTAGACGGTT 59.419 43.478 0.00 0.00 0.00 4.44 R
4963 5150 1.202545 GCTCATTACTCCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.423154 GGACCGCAACTCCGCAAG 61.423 66.667 0.00 0.00 0.00 4.01
139 146 1.103398 GCTTCCTTGTGCAGTGGTGT 61.103 55.000 0.00 0.00 0.00 4.16
182 189 1.144969 GTGTTCGACGAAATGCCAGA 58.855 50.000 12.67 0.00 0.00 3.86
203 210 2.361737 GGAAGGGGCAGTTCTGGC 60.362 66.667 16.31 16.31 0.00 4.85
204 211 2.759795 GAAGGGGCAGTTCTGGCT 59.240 61.111 21.98 6.36 34.52 4.75
205 212 1.075659 GAAGGGGCAGTTCTGGCTT 59.924 57.895 21.98 12.03 34.52 4.35
206 213 0.540597 GAAGGGGCAGTTCTGGCTTT 60.541 55.000 21.98 17.03 34.52 3.51
207 214 0.540597 AAGGGGCAGTTCTGGCTTTC 60.541 55.000 21.98 13.61 34.52 2.62
208 215 1.075659 GGGGCAGTTCTGGCTTTCT 59.924 57.895 21.98 0.00 34.52 2.52
209 216 1.246737 GGGGCAGTTCTGGCTTTCTG 61.247 60.000 21.98 0.00 34.52 3.02
210 217 1.246737 GGGCAGTTCTGGCTTTCTGG 61.247 60.000 21.98 0.00 34.52 3.86
229 236 1.226974 GCGCTGGCTCTGTTCGATA 60.227 57.895 0.00 0.00 35.83 2.92
230 237 0.806102 GCGCTGGCTCTGTTCGATAA 60.806 55.000 0.00 0.00 35.83 1.75
233 240 2.609459 CGCTGGCTCTGTTCGATAAAAT 59.391 45.455 0.00 0.00 0.00 1.82
282 289 5.790593 AGCACTTGAGAAATCAATGCAAAT 58.209 33.333 18.56 0.00 34.03 2.32
283 290 6.228258 AGCACTTGAGAAATCAATGCAAATT 58.772 32.000 18.56 0.00 34.03 1.82
288 295 5.726397 TGAGAAATCAATGCAAATTCCTGG 58.274 37.500 0.00 0.00 0.00 4.45
441 496 4.884164 AGCTGGAGTTACTATTGAATTGGC 59.116 41.667 0.00 0.00 0.00 4.52
497 552 2.827921 GGACTGGATCAATTGCAAAGGT 59.172 45.455 1.71 0.00 0.00 3.50
511 566 2.298729 GCAAAGGTTTGGCCATTAGTGA 59.701 45.455 6.09 0.00 40.61 3.41
513 568 3.525800 AAGGTTTGGCCATTAGTGAGT 57.474 42.857 6.09 0.00 40.61 3.41
521 576 2.173569 GGCCATTAGTGAGTTGGGAGAT 59.826 50.000 0.00 0.00 0.00 2.75
713 769 5.460646 CGCAAGTTTATCAACAGATGGTTT 58.539 37.500 0.00 0.00 37.72 3.27
714 770 5.569059 CGCAAGTTTATCAACAGATGGTTTC 59.431 40.000 0.00 0.00 37.72 2.78
715 771 6.446318 GCAAGTTTATCAACAGATGGTTTCA 58.554 36.000 0.00 0.00 37.72 2.69
716 772 7.092716 GCAAGTTTATCAACAGATGGTTTCAT 58.907 34.615 0.00 0.00 37.72 2.57
940 1016 4.443315 CCCAAACTCAAAACAAGAAGCCAT 60.443 41.667 0.00 0.00 0.00 4.40
957 1033 3.390183 ATCGCCCATCGCAAGCAGA 62.390 57.895 0.00 0.00 37.30 4.26
968 1044 1.885163 GCAAGCAGAAGCCAGGCAAT 61.885 55.000 15.80 0.80 43.56 3.56
1056 1135 0.959372 CTCTTGCACTTGCTCCTGGG 60.959 60.000 2.33 0.00 42.66 4.45
1063 1142 3.635268 CTTGCTCCTGGGCCTGGAC 62.635 68.421 26.63 21.83 0.00 4.02
1141 1220 2.328099 CGGCTGCTTTCCAGTGTCC 61.328 63.158 0.00 0.00 43.71 4.02
1158 1237 0.818445 TCCAGCGGGAGATAGACGAC 60.818 60.000 0.00 0.00 38.64 4.34
1348 1427 3.379445 ACGGGCAGGACACGGTAG 61.379 66.667 0.00 0.00 0.00 3.18
1417 1496 2.668632 GGACCGGTGATGAAGCCA 59.331 61.111 14.63 0.00 0.00 4.75
1448 1527 4.208686 GCCTGTAGAGGTCGCCCG 62.209 72.222 7.90 0.00 42.15 6.13
1508 1587 1.144936 CGAAGATCCAGGAGGGTGC 59.855 63.158 0.00 0.00 38.11 5.01
1531 1610 2.742372 CCGACGACCAAGCCCAAG 60.742 66.667 0.00 0.00 0.00 3.61
1557 1636 0.248661 CAGCGTTCGACGAGATGGAT 60.249 55.000 10.82 0.00 46.05 3.41
1559 1638 1.880675 AGCGTTCGACGAGATGGATAT 59.119 47.619 10.82 0.00 46.05 1.63
1567 1646 3.005554 GACGAGATGGATATGGCAATGG 58.994 50.000 0.00 0.00 0.00 3.16
1813 1919 2.159734 CGAAGCTCATGTCTTGTTCTGC 60.160 50.000 7.51 0.00 0.00 4.26
1831 1937 0.325272 GCCCCCTCTCGTTTCTTCTT 59.675 55.000 0.00 0.00 0.00 2.52
1835 1941 3.477530 CCCCTCTCGTTTCTTCTTTGTT 58.522 45.455 0.00 0.00 0.00 2.83
1937 2043 3.788163 GCTGTTTCTAGCATCGAAAATGC 59.212 43.478 1.15 1.15 43.17 3.56
1945 2051 2.932498 GCATCGAAAATGCTTCACACA 58.068 42.857 2.24 0.00 41.52 3.72
1946 2052 2.658325 GCATCGAAAATGCTTCACACAC 59.342 45.455 2.24 0.00 41.52 3.82
1947 2053 2.661504 TCGAAAATGCTTCACACACG 57.338 45.000 0.00 0.00 0.00 4.49
1948 2054 2.205911 TCGAAAATGCTTCACACACGA 58.794 42.857 0.00 0.00 0.00 4.35
1949 2055 2.033236 TCGAAAATGCTTCACACACGAC 60.033 45.455 0.00 0.00 0.00 4.34
1950 2056 2.286125 CGAAAATGCTTCACACACGACA 60.286 45.455 0.00 0.00 0.00 4.35
1951 2057 3.291585 GAAAATGCTTCACACACGACAG 58.708 45.455 0.00 0.00 0.00 3.51
1952 2058 1.953559 AATGCTTCACACACGACAGT 58.046 45.000 0.00 0.00 0.00 3.55
1962 2068 2.966324 CACGACAGTGTTTGGACGA 58.034 52.632 8.15 0.00 43.15 4.20
1963 2069 1.497991 CACGACAGTGTTTGGACGAT 58.502 50.000 8.15 0.00 43.15 3.73
1964 2070 2.668250 CACGACAGTGTTTGGACGATA 58.332 47.619 8.15 0.00 43.15 2.92
1965 2071 3.054166 CACGACAGTGTTTGGACGATAA 58.946 45.455 8.15 0.00 43.15 1.75
1966 2072 3.054878 ACGACAGTGTTTGGACGATAAC 58.945 45.455 8.15 0.00 35.67 1.89
1967 2073 3.243636 ACGACAGTGTTTGGACGATAACT 60.244 43.478 8.15 0.00 35.67 2.24
1968 2074 3.121279 CGACAGTGTTTGGACGATAACTG 59.879 47.826 0.00 0.00 40.61 3.16
1969 2075 2.806244 ACAGTGTTTGGACGATAACTGC 59.194 45.455 0.00 0.00 38.84 4.40
1970 2076 2.805671 CAGTGTTTGGACGATAACTGCA 59.194 45.455 0.00 0.00 0.00 4.41
1971 2077 2.806244 AGTGTTTGGACGATAACTGCAC 59.194 45.455 0.00 0.00 0.00 4.57
1972 2078 1.795872 TGTTTGGACGATAACTGCACG 59.204 47.619 0.00 0.00 0.00 5.34
1973 2079 2.063266 GTTTGGACGATAACTGCACGA 58.937 47.619 0.24 0.00 0.00 4.35
1974 2080 2.665649 TTGGACGATAACTGCACGAT 57.334 45.000 0.24 0.00 0.00 3.73
1975 2081 2.203800 TGGACGATAACTGCACGATC 57.796 50.000 0.24 0.00 0.00 3.69
1976 2082 1.121240 GGACGATAACTGCACGATCG 58.879 55.000 14.88 14.88 46.12 3.69
1977 2083 1.268386 GGACGATAACTGCACGATCGA 60.268 52.381 24.34 0.00 44.04 3.59
1978 2084 2.037649 GACGATAACTGCACGATCGAG 58.962 52.381 24.34 16.03 44.04 4.04
1979 2085 1.268589 ACGATAACTGCACGATCGAGG 60.269 52.381 24.34 14.40 44.04 4.63
1980 2086 1.772182 GATAACTGCACGATCGAGGG 58.228 55.000 24.34 11.76 0.00 4.30
1981 2087 1.337071 GATAACTGCACGATCGAGGGA 59.663 52.381 24.34 13.49 0.00 4.20
1982 2088 1.399714 TAACTGCACGATCGAGGGAT 58.600 50.000 24.34 5.75 34.96 3.85
1983 2089 0.103208 AACTGCACGATCGAGGGATC 59.897 55.000 24.34 1.28 44.63 3.36
1984 2090 1.006805 CTGCACGATCGAGGGATCC 60.007 63.158 24.34 1.92 45.16 3.36
1985 2091 1.738346 CTGCACGATCGAGGGATCCA 61.738 60.000 24.34 5.89 45.16 3.41
1986 2092 1.006805 GCACGATCGAGGGATCCAG 60.007 63.158 24.34 4.35 45.16 3.86
1987 2093 1.006805 CACGATCGAGGGATCCAGC 60.007 63.158 24.34 3.36 45.16 4.85
1988 2094 2.256764 CGATCGAGGGATCCAGCG 59.743 66.667 15.23 16.10 45.16 5.18
1989 2095 2.653702 GATCGAGGGATCCAGCGG 59.346 66.667 20.84 5.52 42.72 5.52
1990 2096 3.581687 GATCGAGGGATCCAGCGGC 62.582 68.421 20.84 12.27 42.72 6.53
2010 2116 4.383861 CTGCTGGGCTGTGCTCGA 62.384 66.667 0.00 0.00 0.00 4.04
2011 2117 4.687215 TGCTGGGCTGTGCTCGAC 62.687 66.667 0.00 0.00 0.00 4.20
2012 2118 4.687215 GCTGGGCTGTGCTCGACA 62.687 66.667 0.00 0.00 0.00 4.35
2013 2119 2.267006 CTGGGCTGTGCTCGACAT 59.733 61.111 0.00 0.00 32.74 3.06
2014 2120 1.376424 CTGGGCTGTGCTCGACATT 60.376 57.895 0.00 0.00 32.74 2.71
2015 2121 1.364626 CTGGGCTGTGCTCGACATTC 61.365 60.000 0.00 0.00 32.74 2.67
2016 2122 1.078848 GGGCTGTGCTCGACATTCT 60.079 57.895 0.00 0.00 32.74 2.40
2017 2123 0.674895 GGGCTGTGCTCGACATTCTT 60.675 55.000 0.00 0.00 32.74 2.52
2018 2124 0.723981 GGCTGTGCTCGACATTCTTC 59.276 55.000 0.00 0.00 32.74 2.87
2019 2125 0.368227 GCTGTGCTCGACATTCTTCG 59.632 55.000 0.00 0.00 40.53 3.79
2020 2126 0.994995 CTGTGCTCGACATTCTTCGG 59.005 55.000 0.00 0.00 39.58 4.30
2021 2127 1.014044 TGTGCTCGACATTCTTCGGC 61.014 55.000 0.00 0.00 39.58 5.54
2022 2128 0.737715 GTGCTCGACATTCTTCGGCT 60.738 55.000 0.00 0.00 39.58 5.52
2023 2129 0.737367 TGCTCGACATTCTTCGGCTG 60.737 55.000 0.00 0.00 39.58 4.85
2024 2130 1.424493 GCTCGACATTCTTCGGCTGG 61.424 60.000 0.00 0.00 39.58 4.85
2025 2131 0.173481 CTCGACATTCTTCGGCTGGA 59.827 55.000 0.00 0.00 39.58 3.86
2026 2132 0.824109 TCGACATTCTTCGGCTGGAT 59.176 50.000 0.00 0.00 39.58 3.41
2027 2133 1.207089 TCGACATTCTTCGGCTGGATT 59.793 47.619 0.00 0.00 39.58 3.01
2028 2134 2.009774 CGACATTCTTCGGCTGGATTT 58.990 47.619 0.00 0.00 35.26 2.17
2029 2135 3.118920 TCGACATTCTTCGGCTGGATTTA 60.119 43.478 0.00 0.00 39.58 1.40
2030 2136 3.621268 CGACATTCTTCGGCTGGATTTAA 59.379 43.478 0.00 0.00 35.26 1.52
2031 2137 4.494199 CGACATTCTTCGGCTGGATTTAAC 60.494 45.833 0.00 0.00 35.26 2.01
2032 2138 3.694566 ACATTCTTCGGCTGGATTTAACC 59.305 43.478 0.00 0.00 0.00 2.85
2033 2139 2.018542 TCTTCGGCTGGATTTAACCG 57.981 50.000 0.00 0.00 46.97 4.44
2034 2140 1.276989 TCTTCGGCTGGATTTAACCGT 59.723 47.619 0.00 0.00 45.76 4.83
2035 2141 1.664151 CTTCGGCTGGATTTAACCGTC 59.336 52.381 0.00 0.00 45.76 4.79
2036 2142 0.458889 TCGGCTGGATTTAACCGTCG 60.459 55.000 0.00 0.00 45.76 5.12
2037 2143 0.738412 CGGCTGGATTTAACCGTCGT 60.738 55.000 0.00 0.00 40.77 4.34
2038 2144 0.725117 GGCTGGATTTAACCGTCGTG 59.275 55.000 0.00 0.00 0.00 4.35
2039 2145 0.096454 GCTGGATTTAACCGTCGTGC 59.904 55.000 0.00 0.00 0.00 5.34
2040 2146 1.434555 CTGGATTTAACCGTCGTGCA 58.565 50.000 0.00 0.00 0.00 4.57
2041 2147 1.127951 CTGGATTTAACCGTCGTGCAC 59.872 52.381 6.82 6.82 0.00 4.57
2042 2148 1.149987 GGATTTAACCGTCGTGCACA 58.850 50.000 18.64 0.81 0.00 4.57
2043 2149 1.532007 GGATTTAACCGTCGTGCACAA 59.468 47.619 18.64 0.00 0.00 3.33
2044 2150 2.412325 GGATTTAACCGTCGTGCACAAG 60.412 50.000 18.64 6.94 0.00 3.16
2045 2151 1.654317 TTTAACCGTCGTGCACAAGT 58.346 45.000 18.64 4.92 0.00 3.16
2046 2152 1.210870 TTAACCGTCGTGCACAAGTC 58.789 50.000 18.64 2.70 0.00 3.01
2047 2153 0.935831 TAACCGTCGTGCACAAGTCG 60.936 55.000 18.64 14.15 0.00 4.18
2048 2154 2.657296 CCGTCGTGCACAAGTCGT 60.657 61.111 18.64 0.00 0.00 4.34
2049 2155 2.645510 CCGTCGTGCACAAGTCGTC 61.646 63.158 18.64 0.00 0.00 4.20
2050 2156 2.645510 CGTCGTGCACAAGTCGTCC 61.646 63.158 18.64 0.00 0.00 4.79
2051 2157 1.590525 GTCGTGCACAAGTCGTCCA 60.591 57.895 18.64 0.00 0.00 4.02
2052 2158 1.142097 TCGTGCACAAGTCGTCCAA 59.858 52.632 18.64 0.00 0.00 3.53
2053 2159 0.460459 TCGTGCACAAGTCGTCCAAA 60.460 50.000 18.64 0.00 0.00 3.28
2054 2160 0.315869 CGTGCACAAGTCGTCCAAAC 60.316 55.000 18.64 0.00 0.00 2.93
2055 2161 1.014352 GTGCACAAGTCGTCCAAACT 58.986 50.000 13.17 0.00 0.00 2.66
2056 2162 1.400494 GTGCACAAGTCGTCCAAACTT 59.600 47.619 13.17 0.00 37.44 2.66
2057 2163 2.088423 TGCACAAGTCGTCCAAACTTT 58.912 42.857 0.00 0.00 34.79 2.66
2058 2164 3.064271 GTGCACAAGTCGTCCAAACTTTA 59.936 43.478 13.17 0.00 34.79 1.85
2059 2165 3.880490 TGCACAAGTCGTCCAAACTTTAT 59.120 39.130 0.00 0.00 34.79 1.40
2060 2166 4.024387 TGCACAAGTCGTCCAAACTTTATC 60.024 41.667 0.00 0.00 34.79 1.75
2061 2167 4.698276 CACAAGTCGTCCAAACTTTATCG 58.302 43.478 0.00 0.00 34.79 2.92
2062 2168 4.210537 CACAAGTCGTCCAAACTTTATCGT 59.789 41.667 0.00 0.00 34.79 3.73
2063 2169 4.446719 ACAAGTCGTCCAAACTTTATCGTC 59.553 41.667 0.00 0.00 34.79 4.20
2064 2170 3.582780 AGTCGTCCAAACTTTATCGTCC 58.417 45.455 0.00 0.00 0.00 4.79
2065 2171 2.669924 GTCGTCCAAACTTTATCGTCCC 59.330 50.000 0.00 0.00 0.00 4.46
2066 2172 2.004733 CGTCCAAACTTTATCGTCCCC 58.995 52.381 0.00 0.00 0.00 4.81
2067 2173 2.613474 CGTCCAAACTTTATCGTCCCCA 60.613 50.000 0.00 0.00 0.00 4.96
2068 2174 3.617284 GTCCAAACTTTATCGTCCCCAT 58.383 45.455 0.00 0.00 0.00 4.00
2069 2175 4.681244 CGTCCAAACTTTATCGTCCCCATA 60.681 45.833 0.00 0.00 0.00 2.74
2070 2176 4.814771 GTCCAAACTTTATCGTCCCCATAG 59.185 45.833 0.00 0.00 0.00 2.23
2071 2177 3.564225 CCAAACTTTATCGTCCCCATAGC 59.436 47.826 0.00 0.00 0.00 2.97
2072 2178 4.196193 CAAACTTTATCGTCCCCATAGCA 58.804 43.478 0.00 0.00 0.00 3.49
2073 2179 3.470645 ACTTTATCGTCCCCATAGCAC 57.529 47.619 0.00 0.00 0.00 4.40
2074 2180 3.039011 ACTTTATCGTCCCCATAGCACT 58.961 45.455 0.00 0.00 0.00 4.40
2075 2181 3.181465 ACTTTATCGTCCCCATAGCACTG 60.181 47.826 0.00 0.00 0.00 3.66
2076 2182 0.679505 TATCGTCCCCATAGCACTGC 59.320 55.000 0.00 0.00 0.00 4.40
2077 2183 1.050988 ATCGTCCCCATAGCACTGCT 61.051 55.000 8.95 8.95 43.41 4.24
2078 2184 1.227380 CGTCCCCATAGCACTGCTC 60.227 63.158 6.86 0.00 40.44 4.26
2079 2185 1.680522 CGTCCCCATAGCACTGCTCT 61.681 60.000 6.86 0.00 40.44 4.09
2080 2186 0.543749 GTCCCCATAGCACTGCTCTT 59.456 55.000 6.86 0.00 40.44 2.85
2081 2187 0.833287 TCCCCATAGCACTGCTCTTC 59.167 55.000 6.86 0.00 40.44 2.87
2082 2188 0.835941 CCCCATAGCACTGCTCTTCT 59.164 55.000 6.86 0.00 40.44 2.85
2083 2189 2.042464 CCCCATAGCACTGCTCTTCTA 58.958 52.381 6.86 0.00 40.44 2.10
2084 2190 2.036992 CCCCATAGCACTGCTCTTCTAG 59.963 54.545 6.86 0.00 40.44 2.43
2114 2220 3.674753 GCAACAAAATGCTACATGGTGTC 59.325 43.478 0.00 0.00 43.06 3.67
2225 2331 8.976986 AAGAAACAGTAGCATTCAATCAAATC 57.023 30.769 0.00 0.00 0.00 2.17
2375 2497 6.173339 TCAAATTGATTAAGCCGTCTCTCTT 58.827 36.000 0.00 0.00 0.00 2.85
2539 2661 1.399791 CTCTCGCCATTGCTTCCTTTC 59.600 52.381 0.00 0.00 34.43 2.62
2597 2719 5.241403 TCCTGTTCTGCCAAATTTCTCTA 57.759 39.130 0.00 0.00 0.00 2.43
2667 2789 9.855021 AAATTATAAATAATGGGCAGCGATAAC 57.145 29.630 0.00 0.00 33.51 1.89
2692 2814 5.044846 AGCTATCCACAACCAGGATTAACTT 60.045 40.000 0.00 0.00 43.21 2.66
2697 2819 4.218417 CCACAACCAGGATTAACTTTCCAG 59.782 45.833 0.00 0.00 35.59 3.86
2786 2916 7.339466 TCCTTTACATGAGATTCCCTTTTTAGC 59.661 37.037 0.00 0.00 0.00 3.09
2837 2967 5.988310 TTCCTCTTGAATTGCATCACATT 57.012 34.783 0.00 0.00 0.00 2.71
2838 2968 5.319140 TCCTCTTGAATTGCATCACATTG 57.681 39.130 0.00 0.00 0.00 2.82
2841 2971 5.575606 CCTCTTGAATTGCATCACATTGTTC 59.424 40.000 0.00 0.00 0.00 3.18
2925 3055 9.807921 TTCTCCTGGATCATAATAAAATAACCC 57.192 33.333 0.00 0.00 0.00 4.11
3135 3265 3.897505 AGAAACCTGGGACCAAAAATCAG 59.102 43.478 0.00 0.00 0.00 2.90
3270 3400 2.009051 TGCTGTGCTTACATTCATCGG 58.991 47.619 0.00 0.00 0.00 4.18
3818 3999 3.200605 TGCTGATGGATCTTAGGAAGCAA 59.799 43.478 0.00 0.00 36.54 3.91
3853 4034 0.755079 TCAGCTGATATTGAGGCGCT 59.245 50.000 13.74 0.00 0.00 5.92
3912 4093 1.694048 CCAACAGGGAGATCCTAGCCT 60.694 57.143 0.00 0.00 46.12 4.58
4124 4305 4.399483 TGTACTAAGGAAGGAGACTGGT 57.601 45.455 0.00 0.00 42.68 4.00
4242 4423 0.833409 TGAGTTCCTGCTCCTGCTCA 60.833 55.000 0.00 0.00 40.48 4.26
4469 4650 2.600867 GGAGCTTTCGTCGAAGAGAATG 59.399 50.000 7.86 4.94 36.95 2.67
4623 4807 9.344309 GTCTTACACTGTCTTTCTGTATAGTTC 57.656 37.037 0.00 0.00 0.00 3.01
4729 4915 4.103311 AGAGGAACTTGTTCTTACAGCCTT 59.897 41.667 12.44 0.00 41.55 4.35
4772 4959 5.675684 TCTGTGCATCCTACAGATAAACA 57.324 39.130 3.89 0.00 46.92 2.83
4790 4977 9.499479 AGATAAACAAATCATCTAGCTACCATG 57.501 33.333 0.00 0.00 0.00 3.66
4825 5012 9.779951 TTTAATTCTTTCCCTAGTAGTACCTCT 57.220 33.333 0.00 0.00 0.00 3.69
4826 5013 7.663043 AATTCTTTCCCTAGTAGTACCTCTG 57.337 40.000 0.00 0.00 0.00 3.35
4827 5014 5.793034 TCTTTCCCTAGTAGTACCTCTGT 57.207 43.478 0.00 0.00 0.00 3.41
4828 5015 6.150034 TCTTTCCCTAGTAGTACCTCTGTT 57.850 41.667 0.00 0.00 0.00 3.16
4829 5016 6.186234 TCTTTCCCTAGTAGTACCTCTGTTC 58.814 44.000 0.00 0.00 0.00 3.18
4830 5017 4.516652 TCCCTAGTAGTACCTCTGTTCC 57.483 50.000 0.00 0.00 0.00 3.62
4831 5018 4.117632 TCCCTAGTAGTACCTCTGTTCCT 58.882 47.826 0.00 0.00 0.00 3.36
4832 5019 5.291987 TCCCTAGTAGTACCTCTGTTCCTA 58.708 45.833 0.00 0.00 0.00 2.94
4833 5020 5.733154 TCCCTAGTAGTACCTCTGTTCCTAA 59.267 44.000 0.00 0.00 0.00 2.69
4834 5021 6.218315 TCCCTAGTAGTACCTCTGTTCCTAAA 59.782 42.308 0.00 0.00 0.00 1.85
4835 5022 7.068061 CCCTAGTAGTACCTCTGTTCCTAAAT 58.932 42.308 0.00 0.00 0.00 1.40
4836 5023 8.223330 CCCTAGTAGTACCTCTGTTCCTAAATA 58.777 40.741 0.00 0.00 0.00 1.40
4837 5024 9.810870 CCTAGTAGTACCTCTGTTCCTAAATAT 57.189 37.037 0.00 0.00 0.00 1.28
4840 5027 9.282569 AGTAGTACCTCTGTTCCTAAATATACG 57.717 37.037 0.00 0.00 0.00 3.06
4841 5028 9.061435 GTAGTACCTCTGTTCCTAAATATACGT 57.939 37.037 0.00 0.00 0.00 3.57
4842 5029 8.164058 AGTACCTCTGTTCCTAAATATACGTC 57.836 38.462 0.00 0.00 0.00 4.34
4843 5030 7.997803 AGTACCTCTGTTCCTAAATATACGTCT 59.002 37.037 0.00 0.00 0.00 4.18
4844 5031 7.657023 ACCTCTGTTCCTAAATATACGTCTT 57.343 36.000 0.00 0.00 0.00 3.01
4845 5032 8.075761 ACCTCTGTTCCTAAATATACGTCTTT 57.924 34.615 0.00 0.00 0.00 2.52
4846 5033 8.537858 ACCTCTGTTCCTAAATATACGTCTTTT 58.462 33.333 0.00 0.00 0.00 2.27
4847 5034 9.379791 CCTCTGTTCCTAAATATACGTCTTTTT 57.620 33.333 0.00 0.00 0.00 1.94
4864 5051 9.667107 ACGTCTTTTTAGAGATTCCATTATGAA 57.333 29.630 0.00 0.00 0.00 2.57
4865 5052 9.922305 CGTCTTTTTAGAGATTCCATTATGAAC 57.078 33.333 0.00 0.00 0.00 3.18
4874 5061 8.307483 AGAGATTCCATTATGAACTACATACGG 58.693 37.037 0.00 0.00 40.62 4.02
4875 5062 8.190326 AGATTCCATTATGAACTACATACGGA 57.810 34.615 0.00 0.00 40.62 4.69
4876 5063 8.307483 AGATTCCATTATGAACTACATACGGAG 58.693 37.037 0.00 0.00 40.89 4.63
4877 5064 5.779922 TCCATTATGAACTACATACGGAGC 58.220 41.667 0.00 0.00 40.62 4.70
4878 5065 5.303333 TCCATTATGAACTACATACGGAGCA 59.697 40.000 0.00 0.00 40.62 4.26
4879 5066 5.989168 CCATTATGAACTACATACGGAGCAA 59.011 40.000 0.00 0.00 40.62 3.91
4880 5067 6.481976 CCATTATGAACTACATACGGAGCAAA 59.518 38.462 0.00 0.00 40.62 3.68
4881 5068 7.011950 CCATTATGAACTACATACGGAGCAAAA 59.988 37.037 0.00 0.00 40.62 2.44
4882 5069 8.559536 CATTATGAACTACATACGGAGCAAAAT 58.440 33.333 0.00 0.00 40.62 1.82
4883 5070 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
4884 5071 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
4885 5072 5.580691 TGAACTACATACGGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
4886 5073 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4887 5074 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4888 5075 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4889 5076 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4890 5077 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4891 5078 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4892 5079 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4893 5080 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4894 5081 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4895 5082 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4896 5083 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4972 5159 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
4973 5160 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4974 5161 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4975 5162 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4976 5163 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4977 5164 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5120 5307 2.968574 GCCCAAGATCTACTCCATCTCA 59.031 50.000 0.00 0.00 29.82 3.27
5215 5402 5.059833 CAGGCTACATTTAGATCCCAGTTC 58.940 45.833 0.00 0.00 0.00 3.01
5397 5587 3.502211 TGATGAAACTTCTTCCGAAAGCC 59.498 43.478 3.64 0.00 32.21 4.35
5426 5616 9.679661 TGGCATTATTCAGAAACTGTAAGATTA 57.320 29.630 0.00 0.00 37.43 1.75
5456 5646 6.151817 AGCCTCTTGTCATTTCTTGAAATACC 59.848 38.462 8.09 3.63 35.70 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.610624 CCTAAACCTTGCTCTTGCGGA 60.611 52.381 0.00 0.00 43.34 5.54
34 35 1.360820 GCTCGACCTAAACCTTGCTC 58.639 55.000 0.00 0.00 0.00 4.26
121 128 0.947244 GACACCACTGCACAAGGAAG 59.053 55.000 1.59 0.00 0.00 3.46
182 189 0.111253 CAGAACTGCCCCTTCCTTGT 59.889 55.000 0.00 0.00 0.00 3.16
203 210 3.130160 GAGCCAGCGCCCAGAAAG 61.130 66.667 2.29 0.00 34.57 2.62
204 211 3.640407 AGAGCCAGCGCCCAGAAA 61.640 61.111 2.29 0.00 34.57 2.52
205 212 4.399395 CAGAGCCAGCGCCCAGAA 62.399 66.667 2.29 0.00 34.57 3.02
207 214 4.711949 AACAGAGCCAGCGCCCAG 62.712 66.667 2.29 0.00 34.57 4.45
208 215 4.704833 GAACAGAGCCAGCGCCCA 62.705 66.667 2.29 0.00 34.57 5.36
210 217 2.629050 TATCGAACAGAGCCAGCGCC 62.629 60.000 2.29 0.00 34.57 6.53
229 236 0.700564 TCTCCTCTGCTGGGCATTTT 59.299 50.000 0.00 0.00 38.13 1.82
230 237 0.700564 TTCTCCTCTGCTGGGCATTT 59.299 50.000 0.00 0.00 38.13 2.32
233 240 2.964310 GCTTCTCCTCTGCTGGGCA 61.964 63.158 0.00 0.00 36.92 5.36
282 289 1.074775 AACTCGCCAATGCCAGGAA 59.925 52.632 0.00 0.00 28.84 3.36
283 290 1.675310 CAACTCGCCAATGCCAGGA 60.675 57.895 0.00 0.00 28.84 3.86
288 295 1.377202 TCTCCCAACTCGCCAATGC 60.377 57.895 0.00 0.00 0.00 3.56
293 300 1.648467 GCATTGTCTCCCAACTCGCC 61.648 60.000 0.00 0.00 35.44 5.54
441 496 1.002033 GAAGCTGCTTGTGTCAACCAG 60.002 52.381 21.25 1.78 0.00 4.00
497 552 2.109128 TCCCAACTCACTAATGGCCAAA 59.891 45.455 10.96 0.00 32.71 3.28
536 591 2.693069 CGTCTTCTGTCAAGCATTCCT 58.307 47.619 0.00 0.00 0.00 3.36
614 669 1.002315 ACCATCTTGGCCAAATGCAAC 59.998 47.619 20.91 0.00 42.67 4.17
713 769 5.396772 GGGAATGTCATTGTAGGTCTGATGA 60.397 44.000 1.88 0.00 0.00 2.92
714 770 4.818546 GGGAATGTCATTGTAGGTCTGATG 59.181 45.833 1.88 0.00 0.00 3.07
715 771 4.474651 TGGGAATGTCATTGTAGGTCTGAT 59.525 41.667 1.88 0.00 0.00 2.90
716 772 3.843619 TGGGAATGTCATTGTAGGTCTGA 59.156 43.478 1.88 0.00 0.00 3.27
825 894 4.755411 CTGGCCTTTTTATAGTCTCGACA 58.245 43.478 3.32 0.00 0.00 4.35
957 1033 2.361610 CGGTGGATTGCCTGGCTT 60.362 61.111 21.03 7.36 34.31 4.35
1040 1116 2.598394 GCCCAGGAGCAAGTGCAA 60.598 61.111 6.00 0.00 45.16 4.08
1122 1201 1.598130 GACACTGGAAAGCAGCCGT 60.598 57.895 0.00 0.00 0.00 5.68
1130 1209 2.111999 CTCCCGCTGGACACTGGAAA 62.112 60.000 0.00 0.00 35.03 3.13
1141 1220 1.280142 CGTCGTCTATCTCCCGCTG 59.720 63.158 0.00 0.00 0.00 5.18
1205 1284 2.037367 CGGAGGTGGAGTGGGAGA 59.963 66.667 0.00 0.00 0.00 3.71
1448 1527 3.470567 CGAACTCAGACCGCGTGC 61.471 66.667 4.92 0.00 0.00 5.34
1528 1607 3.741476 GAACGCTGCCTGCCCTTG 61.741 66.667 0.00 0.00 38.78 3.61
1543 1622 1.960689 TGCCATATCCATCTCGTCGAA 59.039 47.619 0.00 0.00 0.00 3.71
1547 1626 2.877300 GCCATTGCCATATCCATCTCGT 60.877 50.000 0.00 0.00 0.00 4.18
1567 1646 2.401195 GATCTTCGCCAACGCAGC 59.599 61.111 0.00 0.00 39.84 5.25
1604 1710 2.342648 GCCCTTGGTCTTCGTCGT 59.657 61.111 0.00 0.00 0.00 4.34
1813 1919 2.224548 ACAAAGAAGAAACGAGAGGGGG 60.225 50.000 0.00 0.00 0.00 5.40
1831 1937 1.065401 CCGAGCAACAGCAAGAAACAA 59.935 47.619 0.00 0.00 0.00 2.83
1835 1941 1.806542 GAATCCGAGCAACAGCAAGAA 59.193 47.619 0.00 0.00 0.00 2.52
1869 1975 8.691661 AGAGCCACAAAAACTAGAAATTCTTA 57.308 30.769 0.00 0.00 0.00 2.10
1928 2034 2.033236 GTCGTGTGTGAAGCATTTTCGA 60.033 45.455 0.00 0.00 0.00 3.71
1929 2035 2.286125 TGTCGTGTGTGAAGCATTTTCG 60.286 45.455 0.00 0.00 0.00 3.46
1930 2036 3.242739 ACTGTCGTGTGTGAAGCATTTTC 60.243 43.478 0.00 0.00 0.00 2.29
1931 2037 2.682856 ACTGTCGTGTGTGAAGCATTTT 59.317 40.909 0.00 0.00 0.00 1.82
1932 2038 2.032054 CACTGTCGTGTGTGAAGCATTT 59.968 45.455 0.00 0.00 36.38 2.32
1933 2039 1.599071 CACTGTCGTGTGTGAAGCATT 59.401 47.619 0.00 0.00 36.38 3.56
1934 2040 1.220529 CACTGTCGTGTGTGAAGCAT 58.779 50.000 0.00 0.00 36.38 3.79
1935 2041 2.676744 CACTGTCGTGTGTGAAGCA 58.323 52.632 0.00 0.00 36.38 3.91
1944 2050 1.497991 ATCGTCCAAACACTGTCGTG 58.502 50.000 0.00 0.00 46.63 4.35
1945 2051 3.054878 GTTATCGTCCAAACACTGTCGT 58.945 45.455 0.00 0.00 0.00 4.34
1946 2052 3.121279 CAGTTATCGTCCAAACACTGTCG 59.879 47.826 0.00 0.00 0.00 4.35
1947 2053 3.120649 GCAGTTATCGTCCAAACACTGTC 60.121 47.826 0.00 0.00 35.17 3.51
1948 2054 2.806244 GCAGTTATCGTCCAAACACTGT 59.194 45.455 0.00 0.00 35.17 3.55
1949 2055 2.805671 TGCAGTTATCGTCCAAACACTG 59.194 45.455 0.00 0.00 35.71 3.66
1950 2056 2.806244 GTGCAGTTATCGTCCAAACACT 59.194 45.455 0.00 0.00 0.00 3.55
1951 2057 2.411031 CGTGCAGTTATCGTCCAAACAC 60.411 50.000 0.00 0.00 0.00 3.32
1952 2058 1.795872 CGTGCAGTTATCGTCCAAACA 59.204 47.619 0.00 0.00 0.00 2.83
1953 2059 2.063266 TCGTGCAGTTATCGTCCAAAC 58.937 47.619 0.00 0.00 0.00 2.93
1954 2060 2.442212 TCGTGCAGTTATCGTCCAAA 57.558 45.000 0.00 0.00 0.00 3.28
1955 2061 2.536365 GATCGTGCAGTTATCGTCCAA 58.464 47.619 0.00 0.00 0.00 3.53
1956 2062 1.533129 CGATCGTGCAGTTATCGTCCA 60.533 52.381 7.03 0.00 38.12 4.02
1957 2063 1.121240 CGATCGTGCAGTTATCGTCC 58.879 55.000 7.03 0.00 38.12 4.79
1958 2064 2.037649 CTCGATCGTGCAGTTATCGTC 58.962 52.381 15.94 5.94 42.32 4.20
1959 2065 1.268589 CCTCGATCGTGCAGTTATCGT 60.269 52.381 15.94 0.00 42.32 3.73
1960 2066 1.399572 CCTCGATCGTGCAGTTATCG 58.600 55.000 15.94 15.56 42.90 2.92
1961 2067 1.337071 TCCCTCGATCGTGCAGTTATC 59.663 52.381 15.94 0.00 0.00 1.75
1962 2068 1.399714 TCCCTCGATCGTGCAGTTAT 58.600 50.000 15.94 0.00 0.00 1.89
1963 2069 1.337071 GATCCCTCGATCGTGCAGTTA 59.663 52.381 15.94 0.00 35.83 2.24
1964 2070 0.103208 GATCCCTCGATCGTGCAGTT 59.897 55.000 15.94 2.24 35.83 3.16
1965 2071 1.736586 GATCCCTCGATCGTGCAGT 59.263 57.895 15.94 0.00 35.83 4.40
1966 2072 1.006805 GGATCCCTCGATCGTGCAG 60.007 63.158 15.94 5.10 45.16 4.41
1967 2073 1.738346 CTGGATCCCTCGATCGTGCA 61.738 60.000 15.94 5.85 45.16 4.57
1968 2074 1.006805 CTGGATCCCTCGATCGTGC 60.007 63.158 15.94 0.70 45.16 5.34
1969 2075 1.006805 GCTGGATCCCTCGATCGTG 60.007 63.158 15.94 12.87 45.16 4.35
1970 2076 2.556459 CGCTGGATCCCTCGATCGT 61.556 63.158 15.94 0.00 45.16 3.73
1971 2077 2.256764 CGCTGGATCCCTCGATCG 59.743 66.667 9.36 9.36 45.16 3.69
1972 2078 2.653702 CCGCTGGATCCCTCGATC 59.346 66.667 20.26 0.00 43.73 3.69
1973 2079 3.620785 GCCGCTGGATCCCTCGAT 61.621 66.667 20.26 0.00 0.00 3.59
1993 2099 4.383861 TCGAGCACAGCCCAGCAG 62.384 66.667 0.00 0.00 0.00 4.24
1994 2100 4.687215 GTCGAGCACAGCCCAGCA 62.687 66.667 0.00 0.00 0.00 4.41
1995 2101 3.965539 ATGTCGAGCACAGCCCAGC 62.966 63.158 0.00 0.00 38.85 4.85
1996 2102 1.364626 GAATGTCGAGCACAGCCCAG 61.365 60.000 0.00 0.00 38.85 4.45
1997 2103 1.375908 GAATGTCGAGCACAGCCCA 60.376 57.895 0.00 0.00 38.85 5.36
1998 2104 0.674895 AAGAATGTCGAGCACAGCCC 60.675 55.000 0.00 0.00 38.85 5.19
1999 2105 0.723981 GAAGAATGTCGAGCACAGCC 59.276 55.000 0.00 0.00 38.85 4.85
2000 2106 0.368227 CGAAGAATGTCGAGCACAGC 59.632 55.000 0.00 0.00 43.86 4.40
2001 2107 0.994995 CCGAAGAATGTCGAGCACAG 59.005 55.000 0.00 0.00 43.86 3.66
2002 2108 1.014044 GCCGAAGAATGTCGAGCACA 61.014 55.000 0.00 0.00 43.86 4.57
2003 2109 0.737715 AGCCGAAGAATGTCGAGCAC 60.738 55.000 9.54 0.00 43.86 4.40
2004 2110 0.737367 CAGCCGAAGAATGTCGAGCA 60.737 55.000 9.54 0.00 43.86 4.26
2005 2111 1.424493 CCAGCCGAAGAATGTCGAGC 61.424 60.000 0.00 0.00 43.86 5.03
2006 2112 0.173481 TCCAGCCGAAGAATGTCGAG 59.827 55.000 0.00 0.00 43.86 4.04
2007 2113 0.824109 ATCCAGCCGAAGAATGTCGA 59.176 50.000 0.00 0.00 43.86 4.20
2008 2114 1.656652 AATCCAGCCGAAGAATGTCG 58.343 50.000 0.00 0.00 40.77 4.35
2009 2115 4.201920 GGTTAAATCCAGCCGAAGAATGTC 60.202 45.833 0.00 0.00 0.00 3.06
2010 2116 3.694566 GGTTAAATCCAGCCGAAGAATGT 59.305 43.478 0.00 0.00 0.00 2.71
2011 2117 3.242739 CGGTTAAATCCAGCCGAAGAATG 60.243 47.826 0.00 0.00 44.21 2.67
2012 2118 2.943033 CGGTTAAATCCAGCCGAAGAAT 59.057 45.455 0.00 0.00 44.21 2.40
2013 2119 2.289819 ACGGTTAAATCCAGCCGAAGAA 60.290 45.455 8.87 0.00 44.21 2.52
2014 2120 1.276989 ACGGTTAAATCCAGCCGAAGA 59.723 47.619 8.87 0.00 44.21 2.87
2015 2121 1.664151 GACGGTTAAATCCAGCCGAAG 59.336 52.381 8.87 0.00 44.21 3.79
2016 2122 1.729284 GACGGTTAAATCCAGCCGAA 58.271 50.000 8.87 0.00 44.21 4.30
2017 2123 0.458889 CGACGGTTAAATCCAGCCGA 60.459 55.000 8.87 0.00 44.21 5.54
2018 2124 0.738412 ACGACGGTTAAATCCAGCCG 60.738 55.000 0.00 0.00 46.53 5.52
2019 2125 0.725117 CACGACGGTTAAATCCAGCC 59.275 55.000 0.00 0.00 0.00 4.85
2020 2126 0.096454 GCACGACGGTTAAATCCAGC 59.904 55.000 0.00 0.00 0.00 4.85
2021 2127 1.127951 GTGCACGACGGTTAAATCCAG 59.872 52.381 0.00 0.00 0.00 3.86
2022 2128 1.149987 GTGCACGACGGTTAAATCCA 58.850 50.000 0.00 0.00 0.00 3.41
2023 2129 1.149987 TGTGCACGACGGTTAAATCC 58.850 50.000 13.13 0.00 0.00 3.01
2024 2130 2.222445 ACTTGTGCACGACGGTTAAATC 59.778 45.455 13.13 0.00 0.00 2.17
2025 2131 2.215196 ACTTGTGCACGACGGTTAAAT 58.785 42.857 13.13 0.00 0.00 1.40
2026 2132 1.593933 GACTTGTGCACGACGGTTAAA 59.406 47.619 13.13 0.00 0.00 1.52
2027 2133 1.210870 GACTTGTGCACGACGGTTAA 58.789 50.000 13.13 0.00 0.00 2.01
2028 2134 0.935831 CGACTTGTGCACGACGGTTA 60.936 55.000 13.13 0.00 0.00 2.85
2029 2135 2.235016 CGACTTGTGCACGACGGTT 61.235 57.895 13.13 0.00 0.00 4.44
2030 2136 2.657296 CGACTTGTGCACGACGGT 60.657 61.111 13.13 5.45 0.00 4.83
2031 2137 2.645510 GACGACTTGTGCACGACGG 61.646 63.158 18.23 6.87 0.00 4.79
2032 2138 2.645510 GGACGACTTGTGCACGACG 61.646 63.158 13.13 13.55 39.04 5.12
2033 2139 1.590525 TGGACGACTTGTGCACGAC 60.591 57.895 13.13 0.00 44.74 4.34
2034 2140 2.809010 TGGACGACTTGTGCACGA 59.191 55.556 13.13 9.87 44.74 4.35
2038 2144 2.844122 AAAGTTTGGACGACTTGTGC 57.156 45.000 0.00 0.00 37.41 4.57
2039 2145 4.210537 ACGATAAAGTTTGGACGACTTGTG 59.789 41.667 14.33 0.00 37.41 3.33
2040 2146 4.374399 ACGATAAAGTTTGGACGACTTGT 58.626 39.130 14.33 0.00 37.41 3.16
2041 2147 4.143179 GGACGATAAAGTTTGGACGACTTG 60.143 45.833 14.33 0.00 37.41 3.16
2042 2148 3.992427 GGACGATAAAGTTTGGACGACTT 59.008 43.478 14.33 0.00 38.92 3.01
2043 2149 3.582780 GGACGATAAAGTTTGGACGACT 58.417 45.455 14.33 0.00 0.00 4.18
2044 2150 2.669924 GGGACGATAAAGTTTGGACGAC 59.330 50.000 14.33 9.77 0.00 4.34
2045 2151 2.354003 GGGGACGATAAAGTTTGGACGA 60.354 50.000 14.33 0.00 0.00 4.20
2046 2152 2.004733 GGGGACGATAAAGTTTGGACG 58.995 52.381 0.00 4.14 0.00 4.79
2047 2153 3.062122 TGGGGACGATAAAGTTTGGAC 57.938 47.619 0.00 0.00 0.00 4.02
2048 2154 4.685030 GCTATGGGGACGATAAAGTTTGGA 60.685 45.833 0.00 0.00 0.00 3.53
2049 2155 3.564225 GCTATGGGGACGATAAAGTTTGG 59.436 47.826 0.00 0.00 0.00 3.28
2050 2156 4.035208 GTGCTATGGGGACGATAAAGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
2051 2157 4.080526 AGTGCTATGGGGACGATAAAGTTT 60.081 41.667 0.00 0.00 41.32 2.66
2052 2158 3.454812 AGTGCTATGGGGACGATAAAGTT 59.545 43.478 0.00 0.00 41.32 2.66
2053 2159 3.039011 AGTGCTATGGGGACGATAAAGT 58.961 45.455 0.00 0.00 41.32 2.66
2054 2160 3.393800 CAGTGCTATGGGGACGATAAAG 58.606 50.000 0.00 0.00 41.32 1.85
2055 2161 2.484770 GCAGTGCTATGGGGACGATAAA 60.485 50.000 8.18 0.00 41.32 1.40
2056 2162 1.070134 GCAGTGCTATGGGGACGATAA 59.930 52.381 8.18 0.00 41.32 1.75
2057 2163 0.679505 GCAGTGCTATGGGGACGATA 59.320 55.000 8.18 0.00 41.32 2.92
2058 2164 1.050988 AGCAGTGCTATGGGGACGAT 61.051 55.000 18.11 0.00 41.32 3.73
2059 2165 1.676678 GAGCAGTGCTATGGGGACGA 61.677 60.000 19.77 0.00 39.88 4.20
2060 2166 1.227380 GAGCAGTGCTATGGGGACG 60.227 63.158 19.77 0.00 39.88 4.79
2061 2167 0.543749 AAGAGCAGTGCTATGGGGAC 59.456 55.000 19.77 3.33 39.88 4.46
2062 2168 0.833287 GAAGAGCAGTGCTATGGGGA 59.167 55.000 19.77 0.00 39.88 4.81
2063 2169 0.835941 AGAAGAGCAGTGCTATGGGG 59.164 55.000 19.77 0.00 39.88 4.96
2064 2170 3.383620 CTAGAAGAGCAGTGCTATGGG 57.616 52.381 19.77 2.49 39.88 4.00
2075 2181 6.895213 TTGTTGCGCAAATGCTAGAAGAGC 62.895 45.833 26.87 8.02 42.14 4.09
2076 2182 2.160219 TGTTGCGCAAATGCTAGAAGAG 59.840 45.455 26.87 0.00 39.32 2.85
2077 2183 2.150390 TGTTGCGCAAATGCTAGAAGA 58.850 42.857 26.87 0.00 39.32 2.87
2078 2184 2.617250 TGTTGCGCAAATGCTAGAAG 57.383 45.000 26.87 0.00 39.32 2.85
2079 2185 3.361794 TTTGTTGCGCAAATGCTAGAA 57.638 38.095 26.87 3.30 41.68 2.10
2080 2186 3.361794 TTTTGTTGCGCAAATGCTAGA 57.638 38.095 26.87 1.98 45.38 2.43
2081 2187 3.722665 GCATTTTGTTGCGCAAATGCTAG 60.723 43.478 34.04 21.69 45.38 3.42
2082 2188 2.157279 GCATTTTGTTGCGCAAATGCTA 59.843 40.909 34.04 18.48 45.38 3.49
2083 2189 1.069771 GCATTTTGTTGCGCAAATGCT 60.070 42.857 34.04 15.86 45.38 3.79
2084 2190 1.320093 GCATTTTGTTGCGCAAATGC 58.680 45.000 30.61 30.61 45.38 3.56
2092 2198 3.652274 ACACCATGTAGCATTTTGTTGC 58.348 40.909 0.00 0.00 43.09 4.17
2162 2268 7.385205 CGAGAGATTTTCCACTGAGACTTTTTA 59.615 37.037 0.00 0.00 0.00 1.52
2225 2331 3.434641 CCATGATGCTACTGGCTTAATCG 59.565 47.826 0.00 0.00 42.39 3.34
2295 2416 2.317040 ACTGGACTTGAACCGAGAAGA 58.683 47.619 0.00 0.00 0.00 2.87
2298 2419 1.544691 GCTACTGGACTTGAACCGAGA 59.455 52.381 0.00 0.00 0.00 4.04
2302 2423 3.334583 TGATGCTACTGGACTTGAACC 57.665 47.619 0.00 0.00 0.00 3.62
2349 2470 6.481644 AGAGAGACGGCTTAATCAATTTGATC 59.518 38.462 12.15 0.42 35.76 2.92
2430 2552 4.672409 GCCCTAACAACACAGCATAATTC 58.328 43.478 0.00 0.00 0.00 2.17
2554 2676 4.518970 GGAAACATCCAGCAGAAAACAGTA 59.481 41.667 0.00 0.00 0.00 2.74
2597 2719 2.840038 TCATTGGCTAGTGATGGTGAGT 59.160 45.455 0.00 0.00 0.00 3.41
2648 2770 3.004734 GCTGTTATCGCTGCCCATTATTT 59.995 43.478 0.00 0.00 0.00 1.40
2667 2789 3.287867 AATCCTGGTTGTGGATAGCTG 57.712 47.619 0.00 0.00 42.93 4.24
2692 2814 8.700973 TGCATGATACTGTTAATAGTACTGGAA 58.299 33.333 13.58 0.00 36.09 3.53
2697 2819 9.751542 AGAACTGCATGATACTGTTAATAGTAC 57.248 33.333 13.58 8.90 36.09 2.73
2786 2916 5.419760 TCGATAATCGAACTACTCAGTGG 57.580 43.478 0.00 0.00 46.90 4.00
3135 3265 3.797039 AGGAAAACAAGAAAAAGCCTGC 58.203 40.909 0.00 0.00 0.00 4.85
3270 3400 0.532862 CCTACACCCATGCGACCATC 60.533 60.000 0.00 0.00 0.00 3.51
3408 3589 3.053619 GGGTCAATCTAAACCATGGGAGT 60.054 47.826 18.09 2.79 37.28 3.85
3818 3999 4.103627 TCAGCTGACCATACATTCATCCAT 59.896 41.667 13.74 0.00 0.00 3.41
3912 4093 3.324846 ACAGCTGGTACTTCATTCTGACA 59.675 43.478 19.93 0.00 0.00 3.58
4242 4423 3.581332 TCTGGAGATTTTGGTAGACGGTT 59.419 43.478 0.00 0.00 0.00 4.44
4379 4560 3.452264 CCACATCCCTCTCAGTAATGACA 59.548 47.826 0.00 0.00 0.00 3.58
4469 4650 0.026803 GAAACATCGTCTGCATCGGC 59.973 55.000 10.63 0.00 41.68 5.54
4509 4690 2.229784 CTGGAAACATTTCTGACAGGGC 59.770 50.000 1.81 0.00 41.51 5.19
4546 4727 2.618053 CACTGGATTACTGGTTCGGTC 58.382 52.381 0.00 0.00 0.00 4.79
4549 4730 3.262420 CTTCCACTGGATTACTGGTTCG 58.738 50.000 0.00 0.00 0.00 3.95
4623 4807 3.649073 TGTCTGGAACACATACACGAAG 58.351 45.455 0.00 0.00 32.00 3.79
4729 4915 7.275560 CACAGAATGACACGTATATTTCTCACA 59.724 37.037 0.00 0.00 39.69 3.58
4790 4977 9.668497 ACTAGGGAAAGAATTAAATGTCTACAC 57.332 33.333 0.00 0.00 0.00 2.90
4818 5005 8.164058 AGACGTATATTTAGGAACAGAGGTAC 57.836 38.462 0.00 0.00 0.00 3.34
4819 5006 8.757982 AAGACGTATATTTAGGAACAGAGGTA 57.242 34.615 0.00 0.00 0.00 3.08
4820 5007 7.657023 AAGACGTATATTTAGGAACAGAGGT 57.343 36.000 0.00 0.00 0.00 3.85
4821 5008 8.943909 AAAAGACGTATATTTAGGAACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
4838 5025 9.667107 TTCATAATGGAATCTCTAAAAAGACGT 57.333 29.630 0.00 0.00 0.00 4.34
4839 5026 9.922305 GTTCATAATGGAATCTCTAAAAAGACG 57.078 33.333 0.00 0.00 0.00 4.18
4848 5035 8.307483 CCGTATGTAGTTCATAATGGAATCTCT 58.693 37.037 4.25 0.00 40.21 3.10
4849 5036 8.304596 TCCGTATGTAGTTCATAATGGAATCTC 58.695 37.037 8.63 0.00 40.10 2.75
4850 5037 8.190326 TCCGTATGTAGTTCATAATGGAATCT 57.810 34.615 8.63 0.00 40.10 2.40
4851 5038 7.063544 GCTCCGTATGTAGTTCATAATGGAATC 59.936 40.741 11.01 5.31 41.27 2.52
4852 5039 6.874134 GCTCCGTATGTAGTTCATAATGGAAT 59.126 38.462 11.01 0.00 41.27 3.01
4853 5040 6.183360 TGCTCCGTATGTAGTTCATAATGGAA 60.183 38.462 11.01 0.00 41.27 3.53
4854 5041 5.303333 TGCTCCGTATGTAGTTCATAATGGA 59.697 40.000 9.98 9.98 40.44 3.41
4855 5042 5.538118 TGCTCCGTATGTAGTTCATAATGG 58.462 41.667 3.99 3.99 40.21 3.16
4856 5043 7.477144 TTTGCTCCGTATGTAGTTCATAATG 57.523 36.000 0.00 0.00 40.21 1.90
4857 5044 8.559536 CATTTTGCTCCGTATGTAGTTCATAAT 58.440 33.333 0.00 0.00 40.21 1.28
4858 5045 7.766738 TCATTTTGCTCCGTATGTAGTTCATAA 59.233 33.333 0.00 0.00 40.21 1.90
4859 5046 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
4860 5047 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
4861 5048 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
4862 5049 5.581085 ACTCATTTTGCTCCGTATGTAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
4863 5050 5.351465 CACTCATTTTGCTCCGTATGTAGTT 59.649 40.000 0.00 0.00 0.00 2.24
4864 5051 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4865 5052 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4866 5053 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4867 5054 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4868 5055 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4869 5056 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4870 5057 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4871 5058 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4872 5059 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4873 5060 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4874 5061 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4946 5133 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
4947 5134 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
4948 5135 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4949 5136 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4950 5137 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4951 5138 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4952 5139 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4953 5140 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4954 5141 8.591072 CATTACTCCCTCCGTTCCTAAATATAA 58.409 37.037 0.00 0.00 0.00 0.98
4955 5142 7.951806 TCATTACTCCCTCCGTTCCTAAATATA 59.048 37.037 0.00 0.00 0.00 0.86
4956 5143 6.785963 TCATTACTCCCTCCGTTCCTAAATAT 59.214 38.462 0.00 0.00 0.00 1.28
4957 5144 6.138263 TCATTACTCCCTCCGTTCCTAAATA 58.862 40.000 0.00 0.00 0.00 1.40
4958 5145 4.966805 TCATTACTCCCTCCGTTCCTAAAT 59.033 41.667 0.00 0.00 0.00 1.40
4959 5146 4.355549 TCATTACTCCCTCCGTTCCTAAA 58.644 43.478 0.00 0.00 0.00 1.85
4960 5147 3.958798 CTCATTACTCCCTCCGTTCCTAA 59.041 47.826 0.00 0.00 0.00 2.69
4961 5148 3.563223 CTCATTACTCCCTCCGTTCCTA 58.437 50.000 0.00 0.00 0.00 2.94
4962 5149 2.389715 CTCATTACTCCCTCCGTTCCT 58.610 52.381 0.00 0.00 0.00 3.36
4963 5150 1.202545 GCTCATTACTCCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
4964 5151 1.480954 TGCTCATTACTCCCTCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
4965 5152 1.568504 TGCTCATTACTCCCTCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
4966 5153 1.414181 CATGCTCATTACTCCCTCCGT 59.586 52.381 0.00 0.00 0.00 4.69
4967 5154 1.270518 CCATGCTCATTACTCCCTCCG 60.271 57.143 0.00 0.00 0.00 4.63
4968 5155 2.050144 TCCATGCTCATTACTCCCTCC 58.950 52.381 0.00 0.00 0.00 4.30
4969 5156 3.845781 TTCCATGCTCATTACTCCCTC 57.154 47.619 0.00 0.00 0.00 4.30
4970 5157 4.803329 ATTTCCATGCTCATTACTCCCT 57.197 40.909 0.00 0.00 0.00 4.20
4971 5158 5.859205 AAATTTCCATGCTCATTACTCCC 57.141 39.130 0.00 0.00 0.00 4.30
4972 5159 6.044682 CCAAAATTTCCATGCTCATTACTCC 58.955 40.000 0.00 0.00 0.00 3.85
4973 5160 6.044682 CCCAAAATTTCCATGCTCATTACTC 58.955 40.000 0.00 0.00 0.00 2.59
4974 5161 5.721000 TCCCAAAATTTCCATGCTCATTACT 59.279 36.000 0.00 0.00 0.00 2.24
4975 5162 5.812127 GTCCCAAAATTTCCATGCTCATTAC 59.188 40.000 0.00 0.00 0.00 1.89
4976 5163 5.104982 GGTCCCAAAATTTCCATGCTCATTA 60.105 40.000 0.00 0.00 0.00 1.90
4977 5164 4.323715 GGTCCCAAAATTTCCATGCTCATT 60.324 41.667 0.00 0.00 0.00 2.57
5134 5321 5.592054 TCACAACTTTCAACAACAACAACA 58.408 33.333 0.00 0.00 0.00 3.33
5135 5322 6.704512 ATCACAACTTTCAACAACAACAAC 57.295 33.333 0.00 0.00 0.00 3.32
5289 5476 9.595823 TTGCACTAGTTGATATACTACCTTTTC 57.404 33.333 0.00 0.00 0.00 2.29
5397 5587 5.490139 ACAGTTTCTGAATAATGCCATCG 57.510 39.130 3.70 0.00 35.18 3.84
5426 5616 5.771666 TCAAGAAATGACAAGAGGCTTTCAT 59.228 36.000 0.00 0.00 31.50 2.57
5456 5646 7.124347 AGCAACTTTCATAATTTTGTGCATG 57.876 32.000 9.79 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.