Multiple sequence alignment - TraesCS5B01G317400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G317400 chr5B 100.000 2891 0 0 1 2891 501466028 501463138 0.000000e+00 5339.0
1 TraesCS5B01G317400 chr5B 94.966 298 14 1 77 374 382259080 382259376 1.570000e-127 466.0
2 TraesCS5B01G317400 chr5B 94.706 170 9 0 373 542 374453780 374453949 6.140000e-67 265.0
3 TraesCS5B01G317400 chr5B 97.468 79 2 0 1 79 695987446 695987368 5.020000e-28 135.0
4 TraesCS5B01G317400 chr5B 97.468 79 2 0 1 79 704220300 704220378 5.020000e-28 135.0
5 TraesCS5B01G317400 chr5D 93.975 2141 65 20 541 2634 415273766 415271643 0.000000e+00 3181.0
6 TraesCS5B01G317400 chr5D 86.973 261 26 5 2636 2891 415271584 415271327 1.310000e-73 287.0
7 TraesCS5B01G317400 chr5A 88.378 2478 99 76 541 2891 527906286 527903871 0.000000e+00 2806.0
8 TraesCS5B01G317400 chr5A 81.607 473 78 6 78 547 441181280 441180814 1.630000e-102 383.0
9 TraesCS5B01G317400 chr2D 95.623 297 12 1 78 374 518263576 518263871 2.610000e-130 475.0
10 TraesCS5B01G317400 chr2D 81.323 257 43 3 1073 1325 492676515 492676770 1.360000e-48 204.0
11 TraesCS5B01G317400 chr2D 97.468 79 2 0 1 79 68935050 68934972 5.020000e-28 135.0
12 TraesCS5B01G317400 chr4D 94.949 297 14 1 78 374 27567420 27567125 5.640000e-127 464.0
13 TraesCS5B01G317400 chr3B 94.667 300 15 1 78 377 783126776 783126478 5.640000e-127 464.0
14 TraesCS5B01G317400 chr7B 90.698 344 25 6 41 378 395605342 395605000 4.390000e-123 451.0
15 TraesCS5B01G317400 chr7B 82.218 478 76 9 69 542 426524048 426524520 1.250000e-108 403.0
16 TraesCS5B01G317400 chr3A 82.692 468 74 4 78 544 545329506 545329967 2.680000e-110 409.0
17 TraesCS5B01G317400 chr3A 82.039 206 30 5 340 543 9488769 9488569 4.950000e-38 169.0
18 TraesCS5B01G317400 chr7D 82.857 455 70 7 78 529 336279287 336279736 4.490000e-108 401.0
19 TraesCS5B01G317400 chr4B 94.706 170 9 0 373 542 622480765 622480596 6.140000e-67 265.0
20 TraesCS5B01G317400 chr4B 93.678 174 11 0 373 546 149387359 149387186 7.950000e-66 261.0
21 TraesCS5B01G317400 chr4A 94.186 172 10 0 373 544 453679817 453679988 2.210000e-66 263.0
22 TraesCS5B01G317400 chr1A 94.186 172 10 0 373 544 425903905 425904076 2.210000e-66 263.0
23 TraesCS5B01G317400 chr3D 87.143 210 19 3 340 544 584344714 584344508 6.230000e-57 231.0
24 TraesCS5B01G317400 chr3D 98.734 79 1 0 1 79 109257694 109257772 1.080000e-29 141.0
25 TraesCS5B01G317400 chr2B 81.323 257 43 3 1073 1325 578605290 578605545 1.360000e-48 204.0
26 TraesCS5B01G317400 chr2B 75.587 213 39 11 340 546 47141180 47140975 3.070000e-15 93.5
27 TraesCS5B01G317400 chr2A 83.043 230 32 5 1073 1297 637984702 637984929 4.880000e-48 202.0
28 TraesCS5B01G317400 chrUn 83.523 176 21 5 362 534 76770119 76770289 1.070000e-34 158.0
29 TraesCS5B01G317400 chr1B 98.734 79 1 0 1 79 566362465 566362543 1.080000e-29 141.0
30 TraesCS5B01G317400 chr7A 97.468 79 2 0 1 79 125710520 125710442 5.020000e-28 135.0
31 TraesCS5B01G317400 chr7A 97.468 79 2 0 1 79 224311111 224311189 5.020000e-28 135.0
32 TraesCS5B01G317400 chr7A 97.468 79 2 0 1 79 465378390 465378312 5.020000e-28 135.0
33 TraesCS5B01G317400 chr6D 97.468 79 2 0 1 79 321125741 321125819 5.020000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G317400 chr5B 501463138 501466028 2890 True 5339 5339 100.000 1 2891 1 chr5B.!!$R1 2890
1 TraesCS5B01G317400 chr5D 415271327 415273766 2439 True 1734 3181 90.474 541 2891 2 chr5D.!!$R1 2350
2 TraesCS5B01G317400 chr5A 527903871 527906286 2415 True 2806 2806 88.378 541 2891 1 chr5A.!!$R2 2350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.036294 CTCTCGTTTTCCCCTCCACC 60.036 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2274 0.321298 GATTACACGGTGTGCCAGGT 60.321 55.0 23.36 3.21 36.98 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.859629 AACTTAGCAAGTAACATAGCGC 57.140 40.909 0.00 0.00 41.91 5.92
25 26 3.857052 ACTTAGCAAGTAACATAGCGCA 58.143 40.909 11.47 0.00 40.69 6.09
26 27 3.617263 ACTTAGCAAGTAACATAGCGCAC 59.383 43.478 11.47 0.00 40.69 5.34
27 28 2.386661 AGCAAGTAACATAGCGCACT 57.613 45.000 11.47 0.00 0.00 4.40
28 29 2.699954 AGCAAGTAACATAGCGCACTT 58.300 42.857 11.47 6.43 0.00 3.16
29 30 2.673368 AGCAAGTAACATAGCGCACTTC 59.327 45.455 11.47 4.08 0.00 3.01
30 31 2.415168 GCAAGTAACATAGCGCACTTCA 59.585 45.455 11.47 0.00 0.00 3.02
31 32 3.120338 GCAAGTAACATAGCGCACTTCAA 60.120 43.478 11.47 0.00 0.00 2.69
32 33 4.641954 CAAGTAACATAGCGCACTTCAAG 58.358 43.478 11.47 0.00 0.00 3.02
33 34 4.188247 AGTAACATAGCGCACTTCAAGA 57.812 40.909 11.47 0.00 0.00 3.02
34 35 4.566004 AGTAACATAGCGCACTTCAAGAA 58.434 39.130 11.47 0.00 0.00 2.52
35 36 5.178797 AGTAACATAGCGCACTTCAAGAAT 58.821 37.500 11.47 0.00 0.00 2.40
36 37 5.643777 AGTAACATAGCGCACTTCAAGAATT 59.356 36.000 11.47 0.00 0.00 2.17
37 38 5.376854 AACATAGCGCACTTCAAGAATTT 57.623 34.783 11.47 0.00 0.00 1.82
38 39 5.376854 ACATAGCGCACTTCAAGAATTTT 57.623 34.783 11.47 0.00 0.00 1.82
39 40 5.772521 ACATAGCGCACTTCAAGAATTTTT 58.227 33.333 11.47 0.00 0.00 1.94
58 59 5.720371 TTTTTGCTTATGTGGCATGTAGT 57.280 34.783 0.00 0.00 39.54 2.73
59 60 5.720371 TTTTGCTTATGTGGCATGTAGTT 57.280 34.783 0.00 0.00 39.54 2.24
60 61 6.825944 TTTTGCTTATGTGGCATGTAGTTA 57.174 33.333 0.00 0.00 39.54 2.24
61 62 6.825944 TTTGCTTATGTGGCATGTAGTTAA 57.174 33.333 0.00 0.00 39.54 2.01
62 63 7.403312 TTTGCTTATGTGGCATGTAGTTAAT 57.597 32.000 0.00 0.00 39.54 1.40
63 64 6.375945 TGCTTATGTGGCATGTAGTTAATG 57.624 37.500 0.00 0.00 34.56 1.90
64 65 6.118852 TGCTTATGTGGCATGTAGTTAATGA 58.881 36.000 0.00 0.00 34.56 2.57
65 66 6.260714 TGCTTATGTGGCATGTAGTTAATGAG 59.739 38.462 0.00 0.00 34.56 2.90
66 67 6.483307 GCTTATGTGGCATGTAGTTAATGAGA 59.517 38.462 0.00 0.00 0.00 3.27
67 68 7.012327 GCTTATGTGGCATGTAGTTAATGAGAA 59.988 37.037 0.00 0.00 0.00 2.87
68 69 6.932356 ATGTGGCATGTAGTTAATGAGAAG 57.068 37.500 0.00 0.00 0.00 2.85
69 70 5.804639 TGTGGCATGTAGTTAATGAGAAGT 58.195 37.500 0.00 0.00 0.00 3.01
70 71 5.643348 TGTGGCATGTAGTTAATGAGAAGTG 59.357 40.000 0.00 0.00 0.00 3.16
71 72 5.065218 GTGGCATGTAGTTAATGAGAAGTGG 59.935 44.000 0.00 0.00 0.00 4.00
72 73 5.186198 GGCATGTAGTTAATGAGAAGTGGT 58.814 41.667 0.00 0.00 0.00 4.16
73 74 6.070481 TGGCATGTAGTTAATGAGAAGTGGTA 60.070 38.462 0.00 0.00 0.00 3.25
74 75 6.821665 GGCATGTAGTTAATGAGAAGTGGTAA 59.178 38.462 0.00 0.00 0.00 2.85
75 76 7.201617 GGCATGTAGTTAATGAGAAGTGGTAAC 60.202 40.741 0.00 0.00 0.00 2.50
93 94 5.892119 TGGTAACATACTCCTTCTGTCTAGG 59.108 44.000 0.00 0.00 46.17 3.02
94 95 5.892686 GGTAACATACTCCTTCTGTCTAGGT 59.107 44.000 0.00 0.00 34.29 3.08
95 96 5.923733 AACATACTCCTTCTGTCTAGGTG 57.076 43.478 0.00 0.00 34.29 4.00
96 97 4.936802 ACATACTCCTTCTGTCTAGGTGT 58.063 43.478 0.00 0.00 41.16 4.16
97 98 4.707448 ACATACTCCTTCTGTCTAGGTGTG 59.293 45.833 0.00 0.00 39.24 3.82
98 99 3.246416 ACTCCTTCTGTCTAGGTGTGT 57.754 47.619 0.00 0.00 37.91 3.72
99 100 4.383931 ACTCCTTCTGTCTAGGTGTGTA 57.616 45.455 0.00 0.00 37.91 2.90
100 101 4.737578 ACTCCTTCTGTCTAGGTGTGTAA 58.262 43.478 0.00 0.00 37.91 2.41
101 102 5.145564 ACTCCTTCTGTCTAGGTGTGTAAA 58.854 41.667 0.00 0.00 37.91 2.01
102 103 5.780793 ACTCCTTCTGTCTAGGTGTGTAAAT 59.219 40.000 0.00 0.00 37.91 1.40
103 104 6.071278 ACTCCTTCTGTCTAGGTGTGTAAATC 60.071 42.308 0.00 0.00 37.91 2.17
104 105 5.778241 TCCTTCTGTCTAGGTGTGTAAATCA 59.222 40.000 0.00 0.00 34.29 2.57
105 106 6.440647 TCCTTCTGTCTAGGTGTGTAAATCAT 59.559 38.462 0.00 0.00 34.29 2.45
106 107 6.758886 CCTTCTGTCTAGGTGTGTAAATCATC 59.241 42.308 0.00 0.00 0.00 2.92
107 108 7.364232 CCTTCTGTCTAGGTGTGTAAATCATCT 60.364 40.741 0.00 0.00 0.00 2.90
108 109 7.482169 TCTGTCTAGGTGTGTAAATCATCTT 57.518 36.000 0.00 0.00 0.00 2.40
109 110 8.589701 TCTGTCTAGGTGTGTAAATCATCTTA 57.410 34.615 0.00 0.00 0.00 2.10
110 111 8.467598 TCTGTCTAGGTGTGTAAATCATCTTAC 58.532 37.037 0.00 0.00 33.22 2.34
111 112 7.255569 TGTCTAGGTGTGTAAATCATCTTACG 58.744 38.462 0.00 0.00 35.00 3.18
112 113 7.121611 TGTCTAGGTGTGTAAATCATCTTACGA 59.878 37.037 0.00 0.00 35.00 3.43
113 114 7.972277 GTCTAGGTGTGTAAATCATCTTACGAA 59.028 37.037 0.00 0.00 35.00 3.85
114 115 8.525316 TCTAGGTGTGTAAATCATCTTACGAAA 58.475 33.333 0.00 0.00 35.00 3.46
115 116 7.972832 AGGTGTGTAAATCATCTTACGAAAA 57.027 32.000 0.00 0.00 35.00 2.29
116 117 8.561738 AGGTGTGTAAATCATCTTACGAAAAT 57.438 30.769 0.00 0.00 35.00 1.82
117 118 8.665685 AGGTGTGTAAATCATCTTACGAAAATC 58.334 33.333 0.00 0.00 35.00 2.17
118 119 8.447833 GGTGTGTAAATCATCTTACGAAAATCA 58.552 33.333 0.00 0.00 35.00 2.57
119 120 9.820229 GTGTGTAAATCATCTTACGAAAATCAA 57.180 29.630 0.00 0.00 35.00 2.57
128 129 9.402320 TCATCTTACGAAAATCAAATAATCCCA 57.598 29.630 0.00 0.00 0.00 4.37
141 142 7.936584 TCAAATAATCCCAAAATACTTAGGCG 58.063 34.615 0.00 0.00 0.00 5.52
142 143 5.959618 ATAATCCCAAAATACTTAGGCGC 57.040 39.130 0.00 0.00 0.00 6.53
143 144 1.658994 TCCCAAAATACTTAGGCGCG 58.341 50.000 0.00 0.00 0.00 6.86
144 145 0.661020 CCCAAAATACTTAGGCGCGG 59.339 55.000 8.83 0.00 0.00 6.46
145 146 1.375551 CCAAAATACTTAGGCGCGGT 58.624 50.000 8.83 0.00 0.00 5.68
146 147 2.553086 CCAAAATACTTAGGCGCGGTA 58.447 47.619 8.83 0.65 0.00 4.02
147 148 2.286025 CCAAAATACTTAGGCGCGGTAC 59.714 50.000 8.83 0.00 0.00 3.34
148 149 2.931325 CAAAATACTTAGGCGCGGTACA 59.069 45.455 8.83 0.00 0.00 2.90
149 150 3.464111 AAATACTTAGGCGCGGTACAT 57.536 42.857 8.83 0.00 0.00 2.29
150 151 3.464111 AATACTTAGGCGCGGTACATT 57.536 42.857 8.83 0.00 0.00 2.71
151 152 4.589216 AATACTTAGGCGCGGTACATTA 57.411 40.909 8.83 0.00 0.00 1.90
152 153 2.965572 ACTTAGGCGCGGTACATTAA 57.034 45.000 8.83 0.00 0.00 1.40
153 154 2.543641 ACTTAGGCGCGGTACATTAAC 58.456 47.619 8.83 0.00 0.00 2.01
154 155 2.167075 ACTTAGGCGCGGTACATTAACT 59.833 45.455 8.83 0.00 0.00 2.24
155 156 2.497107 TAGGCGCGGTACATTAACTC 57.503 50.000 8.83 0.00 0.00 3.01
156 157 0.822164 AGGCGCGGTACATTAACTCT 59.178 50.000 8.83 0.00 0.00 3.24
157 158 1.202382 AGGCGCGGTACATTAACTCTC 60.202 52.381 8.83 0.00 0.00 3.20
158 159 1.470285 GGCGCGGTACATTAACTCTCA 60.470 52.381 8.83 0.00 0.00 3.27
159 160 2.470821 GCGCGGTACATTAACTCTCAT 58.529 47.619 8.83 0.00 0.00 2.90
160 161 2.864343 GCGCGGTACATTAACTCTCATT 59.136 45.455 8.83 0.00 0.00 2.57
161 162 3.308866 GCGCGGTACATTAACTCTCATTT 59.691 43.478 8.83 0.00 0.00 2.32
162 163 4.550255 GCGCGGTACATTAACTCTCATTTC 60.550 45.833 8.83 0.00 0.00 2.17
163 164 4.317139 CGCGGTACATTAACTCTCATTTCG 60.317 45.833 0.00 0.00 0.00 3.46
164 165 4.565564 GCGGTACATTAACTCTCATTTCGT 59.434 41.667 0.00 0.00 0.00 3.85
165 166 5.063060 GCGGTACATTAACTCTCATTTCGTT 59.937 40.000 0.00 0.00 0.00 3.85
166 167 6.401796 GCGGTACATTAACTCTCATTTCGTTT 60.402 38.462 0.00 0.00 0.00 3.60
167 168 7.171434 CGGTACATTAACTCTCATTTCGTTTC 58.829 38.462 0.00 0.00 0.00 2.78
168 169 7.063074 CGGTACATTAACTCTCATTTCGTTTCT 59.937 37.037 0.00 0.00 0.00 2.52
169 170 8.718734 GGTACATTAACTCTCATTTCGTTTCTT 58.281 33.333 0.00 0.00 0.00 2.52
170 171 9.530129 GTACATTAACTCTCATTTCGTTTCTTG 57.470 33.333 0.00 0.00 0.00 3.02
171 172 8.154649 ACATTAACTCTCATTTCGTTTCTTGT 57.845 30.769 0.00 0.00 0.00 3.16
172 173 8.621286 ACATTAACTCTCATTTCGTTTCTTGTT 58.379 29.630 0.00 0.00 0.00 2.83
173 174 9.450807 CATTAACTCTCATTTCGTTTCTTGTTT 57.549 29.630 0.00 0.00 0.00 2.83
174 175 9.665264 ATTAACTCTCATTTCGTTTCTTGTTTC 57.335 29.630 0.00 0.00 0.00 2.78
175 176 5.738370 ACTCTCATTTCGTTTCTTGTTTCG 58.262 37.500 0.00 0.00 0.00 3.46
176 177 5.293569 ACTCTCATTTCGTTTCTTGTTTCGT 59.706 36.000 0.00 0.00 0.00 3.85
177 178 5.498159 TCTCATTTCGTTTCTTGTTTCGTG 58.502 37.500 0.00 0.00 0.00 4.35
178 179 5.292345 TCTCATTTCGTTTCTTGTTTCGTGA 59.708 36.000 0.00 0.00 0.00 4.35
179 180 5.260140 TCATTTCGTTTCTTGTTTCGTGAC 58.740 37.500 0.00 0.00 0.00 3.67
180 181 4.665281 TTTCGTTTCTTGTTTCGTGACA 57.335 36.364 0.00 0.00 0.00 3.58
181 182 4.868450 TTCGTTTCTTGTTTCGTGACAT 57.132 36.364 0.00 0.00 0.00 3.06
182 183 5.970140 TTCGTTTCTTGTTTCGTGACATA 57.030 34.783 0.00 0.00 0.00 2.29
183 184 6.533819 TTCGTTTCTTGTTTCGTGACATAT 57.466 33.333 0.00 0.00 0.00 1.78
184 185 6.148270 TCGTTTCTTGTTTCGTGACATATC 57.852 37.500 0.00 0.00 0.00 1.63
185 186 5.692654 TCGTTTCTTGTTTCGTGACATATCA 59.307 36.000 0.00 0.00 0.00 2.15
186 187 6.201234 TCGTTTCTTGTTTCGTGACATATCAA 59.799 34.615 0.00 0.00 36.31 2.57
187 188 6.299966 CGTTTCTTGTTTCGTGACATATCAAC 59.700 38.462 0.00 0.00 36.31 3.18
188 189 5.856126 TCTTGTTTCGTGACATATCAACC 57.144 39.130 0.00 0.00 36.31 3.77
189 190 5.301555 TCTTGTTTCGTGACATATCAACCA 58.698 37.500 0.00 0.00 36.31 3.67
190 191 5.760743 TCTTGTTTCGTGACATATCAACCAA 59.239 36.000 0.00 0.00 36.31 3.67
191 192 6.429692 TCTTGTTTCGTGACATATCAACCAAT 59.570 34.615 0.00 0.00 36.31 3.16
192 193 7.604545 TCTTGTTTCGTGACATATCAACCAATA 59.395 33.333 0.00 0.00 36.31 1.90
193 194 7.674471 TGTTTCGTGACATATCAACCAATAA 57.326 32.000 0.00 0.00 36.31 1.40
194 195 7.747888 TGTTTCGTGACATATCAACCAATAAG 58.252 34.615 0.00 0.00 36.31 1.73
195 196 7.604545 TGTTTCGTGACATATCAACCAATAAGA 59.395 33.333 0.00 0.00 36.31 2.10
196 197 7.770801 TTCGTGACATATCAACCAATAAGAG 57.229 36.000 0.00 0.00 36.31 2.85
197 198 7.107639 TCGTGACATATCAACCAATAAGAGA 57.892 36.000 0.00 0.00 36.31 3.10
198 199 7.726216 TCGTGACATATCAACCAATAAGAGAT 58.274 34.615 0.00 0.00 36.31 2.75
199 200 7.653311 TCGTGACATATCAACCAATAAGAGATG 59.347 37.037 0.00 0.00 36.31 2.90
200 201 7.439356 CGTGACATATCAACCAATAAGAGATGT 59.561 37.037 0.00 0.00 44.20 3.06
201 202 8.554528 GTGACATATCAACCAATAAGAGATGTG 58.445 37.037 6.64 0.00 42.33 3.21
202 203 7.716560 TGACATATCAACCAATAAGAGATGTGG 59.283 37.037 6.64 0.00 42.33 4.17
203 204 7.000472 ACATATCAACCAATAAGAGATGTGGG 59.000 38.462 0.00 0.00 41.18 4.61
204 205 3.620488 TCAACCAATAAGAGATGTGGGC 58.380 45.455 0.00 0.00 35.32 5.36
205 206 2.689983 CAACCAATAAGAGATGTGGGCC 59.310 50.000 0.00 0.00 35.32 5.80
206 207 1.922447 ACCAATAAGAGATGTGGGCCA 59.078 47.619 0.00 0.00 35.32 5.36
207 208 2.515429 ACCAATAAGAGATGTGGGCCAT 59.485 45.455 10.70 0.00 35.32 4.40
208 209 2.889045 CCAATAAGAGATGTGGGCCATG 59.111 50.000 10.70 0.00 32.56 3.66
209 210 2.283145 ATAAGAGATGTGGGCCATGC 57.717 50.000 10.70 1.77 32.56 4.06
210 211 0.918258 TAAGAGATGTGGGCCATGCA 59.082 50.000 10.70 3.89 32.56 3.96
211 212 0.260816 AAGAGATGTGGGCCATGCAT 59.739 50.000 10.70 9.82 32.56 3.96
212 213 0.467474 AGAGATGTGGGCCATGCATG 60.467 55.000 20.19 20.19 32.56 4.06
213 214 2.083835 GAGATGTGGGCCATGCATGC 62.084 60.000 21.69 11.82 32.56 4.06
214 215 2.042333 ATGTGGGCCATGCATGCT 60.042 55.556 21.69 1.07 30.69 3.79
215 216 1.682451 GATGTGGGCCATGCATGCTT 61.682 55.000 21.69 10.16 32.56 3.91
216 217 1.268992 ATGTGGGCCATGCATGCTTT 61.269 50.000 21.69 3.31 30.69 3.51
217 218 0.614134 TGTGGGCCATGCATGCTTTA 60.614 50.000 21.69 4.59 0.00 1.85
218 219 0.536260 GTGGGCCATGCATGCTTTAA 59.464 50.000 21.69 0.00 0.00 1.52
219 220 1.066286 GTGGGCCATGCATGCTTTAAA 60.066 47.619 21.69 0.00 0.00 1.52
220 221 1.838715 TGGGCCATGCATGCTTTAAAT 59.161 42.857 21.69 0.00 0.00 1.40
221 222 2.215196 GGGCCATGCATGCTTTAAATG 58.785 47.619 21.69 13.22 0.00 2.32
222 223 2.158928 GGGCCATGCATGCTTTAAATGA 60.159 45.455 21.69 0.00 0.00 2.57
223 224 3.495453 GGGCCATGCATGCTTTAAATGAT 60.495 43.478 21.69 0.00 0.00 2.45
224 225 4.131596 GGCCATGCATGCTTTAAATGATT 58.868 39.130 21.69 0.00 0.00 2.57
225 226 4.577283 GGCCATGCATGCTTTAAATGATTT 59.423 37.500 21.69 0.00 0.00 2.17
226 227 5.504994 GGCCATGCATGCTTTAAATGATTTG 60.505 40.000 21.69 3.43 0.00 2.32
227 228 5.294799 GCCATGCATGCTTTAAATGATTTGA 59.705 36.000 21.69 0.00 0.00 2.69
228 229 6.511121 GCCATGCATGCTTTAAATGATTTGAG 60.511 38.462 21.69 2.39 0.00 3.02
229 230 6.759356 CCATGCATGCTTTAAATGATTTGAGA 59.241 34.615 21.69 0.00 0.00 3.27
230 231 7.254319 CCATGCATGCTTTAAATGATTTGAGAC 60.254 37.037 21.69 0.00 0.00 3.36
231 232 6.927416 TGCATGCTTTAAATGATTTGAGACT 58.073 32.000 20.33 0.00 0.00 3.24
232 233 8.054152 TGCATGCTTTAAATGATTTGAGACTA 57.946 30.769 20.33 0.00 0.00 2.59
233 234 8.689061 TGCATGCTTTAAATGATTTGAGACTAT 58.311 29.630 20.33 0.00 0.00 2.12
234 235 9.178427 GCATGCTTTAAATGATTTGAGACTATC 57.822 33.333 11.37 0.00 0.00 2.08
245 246 4.594123 TTGAGACTATCAAACACGGACA 57.406 40.909 0.00 0.00 45.00 4.02
246 247 4.801330 TGAGACTATCAAACACGGACAT 57.199 40.909 0.00 0.00 34.02 3.06
247 248 4.494484 TGAGACTATCAAACACGGACATG 58.506 43.478 0.00 0.00 34.02 3.21
248 249 3.262420 AGACTATCAAACACGGACATGC 58.738 45.455 0.00 0.00 0.00 4.06
249 250 3.000041 GACTATCAAACACGGACATGCA 59.000 45.455 0.00 0.00 0.00 3.96
250 251 3.609853 ACTATCAAACACGGACATGCAT 58.390 40.909 0.00 0.00 0.00 3.96
251 252 4.009675 ACTATCAAACACGGACATGCATT 58.990 39.130 0.00 0.00 0.00 3.56
252 253 2.702898 TCAAACACGGACATGCATTG 57.297 45.000 0.00 0.00 0.00 2.82
253 254 1.269174 TCAAACACGGACATGCATTGG 59.731 47.619 0.00 0.00 0.00 3.16
254 255 1.000385 CAAACACGGACATGCATTGGT 60.000 47.619 0.00 0.00 0.00 3.67
255 256 1.327303 AACACGGACATGCATTGGTT 58.673 45.000 0.00 0.00 0.00 3.67
256 257 2.192664 ACACGGACATGCATTGGTTA 57.807 45.000 0.00 0.00 0.00 2.85
257 258 2.083774 ACACGGACATGCATTGGTTAG 58.916 47.619 0.00 0.00 0.00 2.34
258 259 2.083774 CACGGACATGCATTGGTTAGT 58.916 47.619 0.00 0.00 0.00 2.24
259 260 2.487762 CACGGACATGCATTGGTTAGTT 59.512 45.455 0.00 0.00 0.00 2.24
260 261 2.747446 ACGGACATGCATTGGTTAGTTC 59.253 45.455 0.00 0.00 0.00 3.01
261 262 2.746904 CGGACATGCATTGGTTAGTTCA 59.253 45.455 0.00 0.00 0.00 3.18
262 263 3.378112 CGGACATGCATTGGTTAGTTCAT 59.622 43.478 0.00 0.00 0.00 2.57
263 264 4.142403 CGGACATGCATTGGTTAGTTCATT 60.142 41.667 0.00 0.00 0.00 2.57
264 265 5.104374 GGACATGCATTGGTTAGTTCATTG 58.896 41.667 0.00 0.00 0.00 2.82
265 266 4.497300 ACATGCATTGGTTAGTTCATTGC 58.503 39.130 0.00 0.00 40.09 3.56
267 268 4.804868 TGCATTGGTTAGTTCATTGCAT 57.195 36.364 8.82 0.00 42.64 3.96
268 269 4.496360 TGCATTGGTTAGTTCATTGCATG 58.504 39.130 8.82 0.00 42.64 4.06
269 270 3.307782 GCATTGGTTAGTTCATTGCATGC 59.692 43.478 11.82 11.82 39.70 4.06
270 271 4.496360 CATTGGTTAGTTCATTGCATGCA 58.504 39.130 18.46 18.46 0.00 3.96
271 272 4.804868 TTGGTTAGTTCATTGCATGCAT 57.195 36.364 23.37 7.94 0.00 3.96
272 273 4.804868 TGGTTAGTTCATTGCATGCATT 57.195 36.364 23.37 15.81 0.00 3.56
273 274 4.496360 TGGTTAGTTCATTGCATGCATTG 58.504 39.130 28.49 28.49 0.00 2.82
274 275 4.021280 TGGTTAGTTCATTGCATGCATTGT 60.021 37.500 31.09 20.08 0.00 2.71
275 276 4.931002 GGTTAGTTCATTGCATGCATTGTT 59.069 37.500 31.09 22.64 0.00 2.83
276 277 6.098679 GGTTAGTTCATTGCATGCATTGTTA 58.901 36.000 31.09 21.59 0.00 2.41
277 278 6.757947 GGTTAGTTCATTGCATGCATTGTTAT 59.242 34.615 31.09 22.47 0.00 1.89
278 279 7.278424 GGTTAGTTCATTGCATGCATTGTTATT 59.722 33.333 31.09 21.92 0.00 1.40
279 280 9.299963 GTTAGTTCATTGCATGCATTGTTATTA 57.700 29.630 31.09 21.20 0.00 0.98
280 281 9.866798 TTAGTTCATTGCATGCATTGTTATTAA 57.133 25.926 31.09 24.05 0.00 1.40
281 282 8.951787 AGTTCATTGCATGCATTGTTATTAAT 57.048 26.923 31.09 14.39 0.00 1.40
282 283 9.386010 AGTTCATTGCATGCATTGTTATTAATT 57.614 25.926 31.09 17.52 0.00 1.40
285 286 8.980610 TCATTGCATGCATTGTTATTAATTAGC 58.019 29.630 31.09 0.00 0.00 3.09
286 287 8.766151 CATTGCATGCATTGTTATTAATTAGCA 58.234 29.630 26.86 6.79 35.03 3.49
287 288 8.713737 TTGCATGCATTGTTATTAATTAGCAA 57.286 26.923 23.37 2.04 35.77 3.91
288 289 8.713737 TGCATGCATTGTTATTAATTAGCAAA 57.286 26.923 18.46 0.00 35.08 3.68
289 290 9.159364 TGCATGCATTGTTATTAATTAGCAAAA 57.841 25.926 18.46 0.00 35.08 2.44
307 308 6.835914 AGCAAAATCACATTAAGTTCTCTCG 58.164 36.000 0.00 0.00 0.00 4.04
308 309 6.428159 AGCAAAATCACATTAAGTTCTCTCGT 59.572 34.615 0.00 0.00 0.00 4.18
309 310 7.041098 AGCAAAATCACATTAAGTTCTCTCGTT 60.041 33.333 0.00 0.00 0.00 3.85
310 311 7.591426 GCAAAATCACATTAAGTTCTCTCGTTT 59.409 33.333 0.00 0.00 0.00 3.60
311 312 9.450807 CAAAATCACATTAAGTTCTCTCGTTTT 57.549 29.630 0.00 0.00 0.00 2.43
312 313 9.665264 AAAATCACATTAAGTTCTCTCGTTTTC 57.335 29.630 0.00 0.00 0.00 2.29
313 314 6.780706 TCACATTAAGTTCTCTCGTTTTCC 57.219 37.500 0.00 0.00 0.00 3.13
314 315 5.699458 TCACATTAAGTTCTCTCGTTTTCCC 59.301 40.000 0.00 0.00 0.00 3.97
315 316 5.001874 ACATTAAGTTCTCTCGTTTTCCCC 58.998 41.667 0.00 0.00 0.00 4.81
316 317 4.968971 TTAAGTTCTCTCGTTTTCCCCT 57.031 40.909 0.00 0.00 0.00 4.79
317 318 3.404224 AAGTTCTCTCGTTTTCCCCTC 57.596 47.619 0.00 0.00 0.00 4.30
318 319 1.624312 AGTTCTCTCGTTTTCCCCTCC 59.376 52.381 0.00 0.00 0.00 4.30
319 320 1.346722 GTTCTCTCGTTTTCCCCTCCA 59.653 52.381 0.00 0.00 0.00 3.86
320 321 0.974383 TCTCTCGTTTTCCCCTCCAC 59.026 55.000 0.00 0.00 0.00 4.02
321 322 0.036294 CTCTCGTTTTCCCCTCCACC 60.036 60.000 0.00 0.00 0.00 4.61
322 323 0.473117 TCTCGTTTTCCCCTCCACCT 60.473 55.000 0.00 0.00 0.00 4.00
323 324 0.400594 CTCGTTTTCCCCTCCACCTT 59.599 55.000 0.00 0.00 0.00 3.50
324 325 0.109723 TCGTTTTCCCCTCCACCTTG 59.890 55.000 0.00 0.00 0.00 3.61
325 326 0.893727 CGTTTTCCCCTCCACCTTGG 60.894 60.000 0.00 0.00 39.43 3.61
326 327 0.187606 GTTTTCCCCTCCACCTTGGT 59.812 55.000 0.00 0.00 39.03 3.67
327 328 0.481128 TTTTCCCCTCCACCTTGGTC 59.519 55.000 0.00 0.00 39.03 4.02
328 329 0.699577 TTTCCCCTCCACCTTGGTCA 60.700 55.000 0.00 0.00 39.03 4.02
329 330 0.477597 TTCCCCTCCACCTTGGTCAT 60.478 55.000 0.00 0.00 39.03 3.06
330 331 1.207488 TCCCCTCCACCTTGGTCATG 61.207 60.000 0.00 0.00 39.03 3.07
331 332 1.304282 CCCTCCACCTTGGTCATGG 59.696 63.158 0.00 1.87 39.03 3.66
332 333 1.500783 CCCTCCACCTTGGTCATGGT 61.501 60.000 3.08 3.08 39.03 3.55
335 336 3.266964 CACCTTGGTCATGGTGCG 58.733 61.111 18.71 2.23 45.56 5.34
336 337 2.672996 ACCTTGGTCATGGTGCGC 60.673 61.111 0.00 0.00 37.45 6.09
337 338 2.672651 CCTTGGTCATGGTGCGCA 60.673 61.111 5.66 5.66 0.00 6.09
338 339 2.267351 CCTTGGTCATGGTGCGCAA 61.267 57.895 14.00 0.00 0.00 4.85
339 340 1.081242 CTTGGTCATGGTGCGCAAC 60.081 57.895 21.09 21.09 0.00 4.17
340 341 2.784957 CTTGGTCATGGTGCGCAACG 62.785 60.000 22.39 7.58 0.00 4.10
341 342 3.353836 GGTCATGGTGCGCAACGT 61.354 61.111 22.39 19.37 0.00 3.99
342 343 2.030401 GGTCATGGTGCGCAACGTA 61.030 57.895 21.81 3.22 0.00 3.57
343 344 1.570347 GGTCATGGTGCGCAACGTAA 61.570 55.000 21.81 1.82 0.00 3.18
344 345 0.236187 GTCATGGTGCGCAACGTAAA 59.764 50.000 21.81 8.94 0.00 2.01
345 346 0.945099 TCATGGTGCGCAACGTAAAA 59.055 45.000 21.81 6.13 0.00 1.52
346 347 1.537638 TCATGGTGCGCAACGTAAAAT 59.462 42.857 21.81 4.30 0.00 1.82
347 348 1.648191 CATGGTGCGCAACGTAAAATG 59.352 47.619 21.81 14.12 0.00 2.32
348 349 0.945099 TGGTGCGCAACGTAAAATGA 59.055 45.000 22.39 0.00 0.00 2.57
349 350 1.323791 GGTGCGCAACGTAAAATGAC 58.676 50.000 14.00 0.00 0.00 3.06
350 351 1.069500 GGTGCGCAACGTAAAATGACT 60.069 47.619 14.00 0.00 0.00 3.41
351 352 2.603652 GGTGCGCAACGTAAAATGACTT 60.604 45.455 14.00 0.00 0.00 3.01
352 353 3.364167 GGTGCGCAACGTAAAATGACTTA 60.364 43.478 14.00 0.00 0.00 2.24
353 354 3.596562 GTGCGCAACGTAAAATGACTTAC 59.403 43.478 14.00 0.00 0.00 2.34
354 355 3.247886 TGCGCAACGTAAAATGACTTACA 59.752 39.130 8.16 0.00 32.30 2.41
355 356 3.596562 GCGCAACGTAAAATGACTTACAC 59.403 43.478 0.30 0.00 32.30 2.90
356 357 4.763874 CGCAACGTAAAATGACTTACACA 58.236 39.130 0.00 0.00 32.30 3.72
357 358 4.605594 CGCAACGTAAAATGACTTACACAC 59.394 41.667 0.00 0.00 32.30 3.82
358 359 4.907582 GCAACGTAAAATGACTTACACACC 59.092 41.667 0.00 0.00 32.30 4.16
359 360 5.277634 GCAACGTAAAATGACTTACACACCT 60.278 40.000 0.00 0.00 32.30 4.00
360 361 6.073657 GCAACGTAAAATGACTTACACACCTA 60.074 38.462 0.00 0.00 32.30 3.08
361 362 7.507304 CAACGTAAAATGACTTACACACCTAG 58.493 38.462 0.00 0.00 32.30 3.02
362 363 6.985117 ACGTAAAATGACTTACACACCTAGA 58.015 36.000 0.00 0.00 32.30 2.43
363 364 6.865205 ACGTAAAATGACTTACACACCTAGAC 59.135 38.462 0.00 0.00 32.30 2.59
364 365 6.033196 CGTAAAATGACTTACACACCTAGACG 59.967 42.308 0.00 0.00 32.30 4.18
365 366 4.451629 AATGACTTACACACCTAGACGG 57.548 45.455 0.00 0.00 39.35 4.79
366 367 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
367 368 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
368 369 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
369 370 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
370 371 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
371 372 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
372 373 0.323542 CACACCTAGACGGAGGGAGT 60.324 60.000 5.42 1.31 41.36 3.85
373 374 1.064906 CACACCTAGACGGAGGGAGTA 60.065 57.143 5.42 0.00 41.36 2.59
374 375 1.637553 ACACCTAGACGGAGGGAGTAA 59.362 52.381 5.42 0.00 41.36 2.24
375 376 2.244252 ACACCTAGACGGAGGGAGTAAT 59.756 50.000 5.42 0.00 41.36 1.89
376 377 3.461085 ACACCTAGACGGAGGGAGTAATA 59.539 47.826 5.42 0.00 41.36 0.98
377 378 4.106019 ACACCTAGACGGAGGGAGTAATAT 59.894 45.833 5.42 0.00 41.36 1.28
378 379 4.459685 CACCTAGACGGAGGGAGTAATATG 59.540 50.000 5.42 0.00 41.36 1.78
379 380 4.106019 ACCTAGACGGAGGGAGTAATATGT 59.894 45.833 5.42 0.00 41.36 2.29
380 381 5.078256 CCTAGACGGAGGGAGTAATATGTT 58.922 45.833 0.00 0.00 32.39 2.71
381 382 6.183361 ACCTAGACGGAGGGAGTAATATGTTA 60.183 42.308 5.42 0.00 41.36 2.41
382 383 6.150809 CCTAGACGGAGGGAGTAATATGTTAC 59.849 46.154 4.29 4.29 35.82 2.50
383 384 7.962979 CCTAGACGGAGGGAGTAATATGTTACT 60.963 44.444 14.05 14.05 43.48 2.24
400 401 6.160664 TGTTACTGTAACATAGCGCTTTTC 57.839 37.500 25.14 2.12 43.23 2.29
401 402 5.697178 TGTTACTGTAACATAGCGCTTTTCA 59.303 36.000 25.14 7.38 43.23 2.69
402 403 6.203145 TGTTACTGTAACATAGCGCTTTTCAA 59.797 34.615 25.14 0.00 43.23 2.69
403 404 5.283060 ACTGTAACATAGCGCTTTTCAAG 57.717 39.130 18.68 7.94 0.00 3.02
404 405 4.994852 ACTGTAACATAGCGCTTTTCAAGA 59.005 37.500 18.68 0.00 0.00 3.02
405 406 5.107065 ACTGTAACATAGCGCTTTTCAAGAC 60.107 40.000 18.68 6.42 0.00 3.01
406 407 4.752604 TGTAACATAGCGCTTTTCAAGACA 59.247 37.500 18.68 9.17 0.00 3.41
407 408 4.829064 AACATAGCGCTTTTCAAGACAA 57.171 36.364 18.68 0.00 0.00 3.18
408 409 4.410492 ACATAGCGCTTTTCAAGACAAG 57.590 40.909 18.68 0.00 0.00 3.16
409 410 4.065088 ACATAGCGCTTTTCAAGACAAGA 58.935 39.130 18.68 0.00 0.00 3.02
410 411 4.697352 ACATAGCGCTTTTCAAGACAAGAT 59.303 37.500 18.68 0.00 0.00 2.40
411 412 3.549299 AGCGCTTTTCAAGACAAGATG 57.451 42.857 2.64 0.00 0.00 2.90
412 413 3.141398 AGCGCTTTTCAAGACAAGATGA 58.859 40.909 2.64 0.00 0.00 2.92
413 414 3.188048 AGCGCTTTTCAAGACAAGATGAG 59.812 43.478 2.64 0.00 0.00 2.90
414 415 3.058639 GCGCTTTTCAAGACAAGATGAGT 60.059 43.478 0.00 0.00 0.00 3.41
415 416 4.706527 CGCTTTTCAAGACAAGATGAGTC 58.293 43.478 0.41 0.00 36.26 3.36
417 418 5.635280 CGCTTTTCAAGACAAGATGAGTCTA 59.365 40.000 0.41 0.00 45.11 2.59
418 419 6.146184 CGCTTTTCAAGACAAGATGAGTCTAA 59.854 38.462 0.41 0.00 45.11 2.10
419 420 7.307396 CGCTTTTCAAGACAAGATGAGTCTAAA 60.307 37.037 0.41 0.00 45.11 1.85
420 421 8.345565 GCTTTTCAAGACAAGATGAGTCTAAAA 58.654 33.333 0.41 0.00 45.11 1.52
421 422 9.875675 CTTTTCAAGACAAGATGAGTCTAAAAG 57.124 33.333 12.87 12.87 45.11 2.27
422 423 7.426929 TTCAAGACAAGATGAGTCTAAAAGC 57.573 36.000 0.00 0.00 45.11 3.51
423 424 6.763355 TCAAGACAAGATGAGTCTAAAAGCT 58.237 36.000 0.00 0.00 45.11 3.74
424 425 7.896811 TCAAGACAAGATGAGTCTAAAAGCTA 58.103 34.615 0.00 0.00 45.11 3.32
425 426 8.367911 TCAAGACAAGATGAGTCTAAAAGCTAA 58.632 33.333 0.00 0.00 45.11 3.09
426 427 9.160496 CAAGACAAGATGAGTCTAAAAGCTAAT 57.840 33.333 0.00 0.00 45.11 1.73
427 428 9.732130 AAGACAAGATGAGTCTAAAAGCTAATT 57.268 29.630 0.00 0.00 45.11 1.40
446 447 9.905713 AGCTAATTAATGAAGTCCTTTATGACA 57.094 29.630 0.00 0.00 37.73 3.58
447 448 9.937175 GCTAATTAATGAAGTCCTTTATGACAC 57.063 33.333 0.00 0.00 37.73 3.67
454 455 8.596781 ATGAAGTCCTTTATGACACTACTACT 57.403 34.615 0.00 0.00 37.73 2.57
455 456 9.696572 ATGAAGTCCTTTATGACACTACTACTA 57.303 33.333 0.00 0.00 37.73 1.82
456 457 9.696572 TGAAGTCCTTTATGACACTACTACTAT 57.303 33.333 0.00 0.00 37.73 2.12
490 491 9.409918 TGCACTATGAAGATAGTAACTTAGACT 57.590 33.333 0.00 0.00 42.55 3.24
497 498 9.955102 TGAAGATAGTAACTTAGACTAGTGACA 57.045 33.333 0.00 0.00 32.71 3.58
508 509 9.628500 ACTTAGACTAGTGACATATGTATGACA 57.372 33.333 8.71 0.00 36.35 3.58
519 520 9.628500 TGACATATGTATGACACTAGTCTAAGT 57.372 33.333 8.71 0.00 45.20 2.24
525 526 8.503458 TGTATGACACTAGTCTAAGTTACTCC 57.497 38.462 0.00 0.00 45.20 3.85
526 527 7.555554 TGTATGACACTAGTCTAAGTTACTCCC 59.444 40.741 0.00 0.00 45.20 4.30
527 528 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
528 529 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
529 530 5.262804 ACACTAGTCTAAGTTACTCCCCAG 58.737 45.833 0.00 0.00 0.00 4.45
530 531 5.222296 ACACTAGTCTAAGTTACTCCCCAGT 60.222 44.000 0.00 0.00 36.55 4.00
531 532 6.012157 ACACTAGTCTAAGTTACTCCCCAGTA 60.012 42.308 0.00 0.00 33.62 2.74
532 533 7.061688 CACTAGTCTAAGTTACTCCCCAGTAT 58.938 42.308 0.00 0.00 34.92 2.12
533 534 7.013464 CACTAGTCTAAGTTACTCCCCAGTATG 59.987 44.444 0.00 0.00 34.92 2.39
534 535 6.088541 AGTCTAAGTTACTCCCCAGTATGA 57.911 41.667 0.00 0.00 39.69 2.15
535 536 5.892686 AGTCTAAGTTACTCCCCAGTATGAC 59.107 44.000 0.00 0.00 39.69 3.06
536 537 5.068855 GTCTAAGTTACTCCCCAGTATGACC 59.931 48.000 0.00 0.00 39.69 4.02
537 538 3.484953 AGTTACTCCCCAGTATGACCA 57.515 47.619 0.00 0.00 39.69 4.02
538 539 3.375699 AGTTACTCCCCAGTATGACCAG 58.624 50.000 0.00 0.00 39.69 4.00
539 540 1.789523 TACTCCCCAGTATGACCAGC 58.210 55.000 0.00 0.00 39.69 4.85
546 547 2.158900 CCCAGTATGACCAGCCTAACAG 60.159 54.545 0.00 0.00 39.69 3.16
565 566 0.832135 GACGCCAGGGAGGGATCATA 60.832 60.000 0.00 0.00 38.09 2.15
622 635 1.576421 GTGCGCTCCCAAGTCTTTG 59.424 57.895 9.73 0.00 0.00 2.77
879 917 2.699809 GATCACAGCAAGCTCGCG 59.300 61.111 0.00 0.00 36.85 5.87
1346 1403 1.421410 GCGCTCGTCAACCAGGTATG 61.421 60.000 0.00 0.00 0.00 2.39
1350 1407 2.165845 GCTCGTCAACCAGGTATGTACT 59.834 50.000 0.00 0.00 0.00 2.73
1362 1419 6.999272 ACCAGGTATGTACTACTATGTCTCTG 59.001 42.308 0.00 0.00 0.00 3.35
1385 1442 5.415389 TGCTCTACTACGTACCATGTGTTAA 59.585 40.000 0.00 0.00 0.00 2.01
1464 1524 3.110178 GCGGTCGACGGGTTCTTG 61.110 66.667 22.64 1.16 44.51 3.02
1465 1525 3.110178 CGGTCGACGGGTTCTTGC 61.110 66.667 14.86 0.00 39.42 4.01
1466 1526 2.342648 GGTCGACGGGTTCTTGCT 59.657 61.111 9.92 0.00 0.00 3.91
1467 1527 1.301479 GGTCGACGGGTTCTTGCTT 60.301 57.895 9.92 0.00 0.00 3.91
1468 1528 0.883370 GGTCGACGGGTTCTTGCTTT 60.883 55.000 9.92 0.00 0.00 3.51
1469 1529 0.234884 GTCGACGGGTTCTTGCTTTG 59.765 55.000 0.00 0.00 0.00 2.77
1470 1530 1.082104 CGACGGGTTCTTGCTTTGC 60.082 57.895 0.00 0.00 0.00 3.68
1471 1531 1.285950 GACGGGTTCTTGCTTTGCC 59.714 57.895 0.00 0.00 0.00 4.52
1890 1950 2.110967 CGAGTCCCCGAGCGAGTAA 61.111 63.158 0.00 0.00 0.00 2.24
1942 2010 0.923403 ACGTGATCGATCATGCAACG 59.077 50.000 36.26 30.45 45.43 4.10
1951 2020 2.283298 GATCATGCAACGGATCAGTGT 58.717 47.619 16.85 0.00 39.71 3.55
1959 2032 1.973138 ACGGATCAGTGTTCGTAACG 58.027 50.000 0.00 2.41 33.89 3.18
1994 2072 1.532090 CGTCGAATCCGTGGAGAAGAG 60.532 57.143 0.00 0.00 37.05 2.85
2100 2194 3.791586 GCCAGGCAGTCTCCTCCC 61.792 72.222 6.55 0.00 33.25 4.30
2177 2278 7.907214 ACTTGCTCTTGTTAATTACTACCTG 57.093 36.000 0.00 0.00 0.00 4.00
2178 2279 6.879458 ACTTGCTCTTGTTAATTACTACCTGG 59.121 38.462 0.00 0.00 0.00 4.45
2201 2302 2.264813 CACCGTGTAATCCGTCGAAAT 58.735 47.619 0.00 0.00 0.00 2.17
2206 2307 4.563976 CCGTGTAATCCGTCGAAATTAGTT 59.436 41.667 0.00 0.00 0.00 2.24
2220 2321 8.950961 GTCGAAATTAGTTACAAAACCAAACTC 58.049 33.333 0.00 0.00 36.15 3.01
2230 2331 8.999431 GTTACAAAACCAAACTCATAGAGATCA 58.001 33.333 0.31 0.00 33.32 2.92
2330 2448 4.710865 TCTCTCTTCTCTTGCTGTGATCAT 59.289 41.667 0.00 0.00 0.00 2.45
2630 2770 1.544246 GCCGTTTAGGTCAGCCAAAAT 59.456 47.619 0.00 0.00 43.70 1.82
2634 2774 5.505159 GCCGTTTAGGTCAGCCAAAATATAC 60.505 44.000 0.00 0.00 43.70 1.47
2635 2775 5.820947 CCGTTTAGGTCAGCCAAAATATACT 59.179 40.000 0.00 0.00 37.19 2.12
2636 2776 6.018180 CCGTTTAGGTCAGCCAAAATATACTC 60.018 42.308 0.00 0.00 37.19 2.59
2638 2778 7.226720 CGTTTAGGTCAGCCAAAATATACTCAT 59.773 37.037 0.00 0.00 37.19 2.90
2639 2779 8.345565 GTTTAGGTCAGCCAAAATATACTCATG 58.654 37.037 0.00 0.00 37.19 3.07
2640 2780 4.823989 AGGTCAGCCAAAATATACTCATGC 59.176 41.667 0.00 0.00 37.19 4.06
2641 2781 4.022849 GGTCAGCCAAAATATACTCATGCC 60.023 45.833 0.00 0.00 34.09 4.40
2642 2782 4.823989 GTCAGCCAAAATATACTCATGCCT 59.176 41.667 0.00 0.00 0.00 4.75
2643 2783 5.300286 GTCAGCCAAAATATACTCATGCCTT 59.700 40.000 0.00 0.00 0.00 4.35
2644 2784 5.893255 TCAGCCAAAATATACTCATGCCTTT 59.107 36.000 0.00 0.00 0.00 3.11
2645 2785 6.380846 TCAGCCAAAATATACTCATGCCTTTT 59.619 34.615 0.00 0.00 0.00 2.27
2646 2786 7.043565 CAGCCAAAATATACTCATGCCTTTTT 58.956 34.615 0.00 0.00 0.00 1.94
2767 2970 4.382254 GCAAGCATGAAAAATCCATGGAGA 60.382 41.667 21.33 0.00 41.13 3.71
2774 2977 7.201848 GCATGAAAAATCCATGGAGATCAGTTA 60.202 37.037 21.33 2.89 41.13 2.24
2809 3012 5.336690 GGATTGATGTGCTTGCTAAAGGAAA 60.337 40.000 0.00 0.00 35.28 3.13
2812 3015 6.100404 TGATGTGCTTGCTAAAGGAAATTT 57.900 33.333 0.00 0.00 32.18 1.82
2819 3022 6.650390 TGCTTGCTAAAGGAAATTTTCATTCC 59.350 34.615 9.26 0.00 45.50 3.01
2823 3026 4.615588 AAAGGAAATTTTCATTCCCGCA 57.384 36.364 9.26 0.00 46.17 5.69
2841 3044 5.186021 TCCCGCAACAACATAAATTACCATT 59.814 36.000 0.00 0.00 0.00 3.16
2862 3067 6.392354 CATTAAAAAGTCTGATGTGCCATGT 58.608 36.000 0.00 0.00 0.00 3.21
2868 3073 2.821969 GTCTGATGTGCCATGTTTTCCT 59.178 45.455 0.00 0.00 0.00 3.36
2871 3076 4.012374 CTGATGTGCCATGTTTTCCTAGT 58.988 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.519206 GCGCTATGTTACTTGCTAAGTTACT 59.481 40.000 0.00 0.00 40.62 2.24
1 2 5.290158 TGCGCTATGTTACTTGCTAAGTTAC 59.710 40.000 9.73 8.42 42.81 2.50
2 3 5.290158 GTGCGCTATGTTACTTGCTAAGTTA 59.710 40.000 9.73 0.00 42.81 2.24
3 4 4.092968 GTGCGCTATGTTACTTGCTAAGTT 59.907 41.667 9.73 0.00 42.81 2.66
4 5 3.617263 GTGCGCTATGTTACTTGCTAAGT 59.383 43.478 9.73 6.74 45.40 2.24
5 6 3.865745 AGTGCGCTATGTTACTTGCTAAG 59.134 43.478 9.73 0.00 0.00 2.18
6 7 3.857052 AGTGCGCTATGTTACTTGCTAA 58.143 40.909 9.73 0.00 0.00 3.09
7 8 3.520290 AGTGCGCTATGTTACTTGCTA 57.480 42.857 9.73 0.00 0.00 3.49
8 9 2.386661 AGTGCGCTATGTTACTTGCT 57.613 45.000 9.73 0.00 0.00 3.91
9 10 2.415168 TGAAGTGCGCTATGTTACTTGC 59.585 45.455 12.62 6.08 33.83 4.01
10 11 4.388773 TCTTGAAGTGCGCTATGTTACTTG 59.611 41.667 12.62 0.49 33.83 3.16
11 12 4.566004 TCTTGAAGTGCGCTATGTTACTT 58.434 39.130 9.73 8.79 36.18 2.24
12 13 4.188247 TCTTGAAGTGCGCTATGTTACT 57.812 40.909 9.73 0.00 0.00 2.24
13 14 4.921470 TTCTTGAAGTGCGCTATGTTAC 57.079 40.909 9.73 0.00 0.00 2.50
14 15 6.494893 AAATTCTTGAAGTGCGCTATGTTA 57.505 33.333 9.73 0.00 0.00 2.41
15 16 5.376854 AAATTCTTGAAGTGCGCTATGTT 57.623 34.783 9.73 0.00 0.00 2.71
16 17 5.376854 AAAATTCTTGAAGTGCGCTATGT 57.623 34.783 9.73 0.00 0.00 2.29
36 37 5.720371 ACTACATGCCACATAAGCAAAAA 57.280 34.783 0.00 0.00 44.83 1.94
37 38 5.720371 AACTACATGCCACATAAGCAAAA 57.280 34.783 0.00 0.00 44.83 2.44
38 39 6.825944 TTAACTACATGCCACATAAGCAAA 57.174 33.333 0.00 0.00 44.83 3.68
39 40 6.601217 TCATTAACTACATGCCACATAAGCAA 59.399 34.615 0.00 0.00 44.83 3.91
40 41 6.118852 TCATTAACTACATGCCACATAAGCA 58.881 36.000 0.00 0.00 45.94 3.91
41 42 6.483307 TCTCATTAACTACATGCCACATAAGC 59.517 38.462 0.00 0.00 0.00 3.09
42 43 8.437360 TTCTCATTAACTACATGCCACATAAG 57.563 34.615 0.00 0.00 0.00 1.73
43 44 8.046708 ACTTCTCATTAACTACATGCCACATAA 58.953 33.333 0.00 0.00 0.00 1.90
44 45 7.495606 CACTTCTCATTAACTACATGCCACATA 59.504 37.037 0.00 0.00 0.00 2.29
45 46 6.317140 CACTTCTCATTAACTACATGCCACAT 59.683 38.462 0.00 0.00 0.00 3.21
46 47 5.643348 CACTTCTCATTAACTACATGCCACA 59.357 40.000 0.00 0.00 0.00 4.17
47 48 5.065218 CCACTTCTCATTAACTACATGCCAC 59.935 44.000 0.00 0.00 0.00 5.01
48 49 5.185454 CCACTTCTCATTAACTACATGCCA 58.815 41.667 0.00 0.00 0.00 4.92
49 50 5.186198 ACCACTTCTCATTAACTACATGCC 58.814 41.667 0.00 0.00 0.00 4.40
50 51 7.333423 TGTTACCACTTCTCATTAACTACATGC 59.667 37.037 0.00 0.00 0.00 4.06
51 52 8.771920 TGTTACCACTTCTCATTAACTACATG 57.228 34.615 0.00 0.00 0.00 3.21
53 54 9.865321 GTATGTTACCACTTCTCATTAACTACA 57.135 33.333 0.00 0.00 0.00 2.74
56 57 8.258708 GGAGTATGTTACCACTTCTCATTAACT 58.741 37.037 0.00 0.00 0.00 2.24
57 58 8.258708 AGGAGTATGTTACCACTTCTCATTAAC 58.741 37.037 0.00 0.00 0.00 2.01
58 59 8.375493 AGGAGTATGTTACCACTTCTCATTAA 57.625 34.615 0.00 0.00 0.00 1.40
59 60 7.973048 AGGAGTATGTTACCACTTCTCATTA 57.027 36.000 0.00 0.00 0.00 1.90
60 61 6.875972 AGGAGTATGTTACCACTTCTCATT 57.124 37.500 0.00 0.00 0.00 2.57
61 62 6.670027 AGAAGGAGTATGTTACCACTTCTCAT 59.330 38.462 12.17 0.00 43.07 2.90
62 63 6.017192 AGAAGGAGTATGTTACCACTTCTCA 58.983 40.000 12.17 0.00 43.07 3.27
63 64 6.071278 ACAGAAGGAGTATGTTACCACTTCTC 60.071 42.308 13.88 0.00 43.92 2.87
64 65 5.780793 ACAGAAGGAGTATGTTACCACTTCT 59.219 40.000 12.17 12.17 45.27 2.85
65 66 6.038997 ACAGAAGGAGTATGTTACCACTTC 57.961 41.667 0.00 0.00 39.87 3.01
66 67 5.780793 AGACAGAAGGAGTATGTTACCACTT 59.219 40.000 0.00 0.00 0.00 3.16
67 68 5.334421 AGACAGAAGGAGTATGTTACCACT 58.666 41.667 0.00 0.00 0.00 4.00
68 69 5.662674 AGACAGAAGGAGTATGTTACCAC 57.337 43.478 0.00 0.00 0.00 4.16
69 70 5.892119 CCTAGACAGAAGGAGTATGTTACCA 59.108 44.000 0.00 0.00 36.08 3.25
70 71 5.892686 ACCTAGACAGAAGGAGTATGTTACC 59.107 44.000 0.00 0.00 37.57 2.85
71 72 6.377712 ACACCTAGACAGAAGGAGTATGTTAC 59.622 42.308 0.00 0.00 36.34 2.50
72 73 6.377429 CACACCTAGACAGAAGGAGTATGTTA 59.623 42.308 0.00 0.00 35.99 2.41
73 74 5.186021 CACACCTAGACAGAAGGAGTATGTT 59.814 44.000 0.00 0.00 35.99 2.71
74 75 4.707448 CACACCTAGACAGAAGGAGTATGT 59.293 45.833 0.00 0.00 35.99 2.29
75 76 4.707448 ACACACCTAGACAGAAGGAGTATG 59.293 45.833 0.00 0.00 35.99 2.39
76 77 4.936802 ACACACCTAGACAGAAGGAGTAT 58.063 43.478 0.00 0.00 35.99 2.12
77 78 4.383931 ACACACCTAGACAGAAGGAGTA 57.616 45.455 0.00 0.00 35.99 2.59
78 79 3.246416 ACACACCTAGACAGAAGGAGT 57.754 47.619 0.00 0.00 38.31 3.85
79 80 5.723672 TTTACACACCTAGACAGAAGGAG 57.276 43.478 0.00 0.00 37.57 3.69
80 81 5.778241 TGATTTACACACCTAGACAGAAGGA 59.222 40.000 0.00 0.00 37.57 3.36
81 82 6.037786 TGATTTACACACCTAGACAGAAGG 57.962 41.667 0.00 0.00 40.20 3.46
82 83 7.551585 AGATGATTTACACACCTAGACAGAAG 58.448 38.462 0.00 0.00 0.00 2.85
83 84 7.482169 AGATGATTTACACACCTAGACAGAA 57.518 36.000 0.00 0.00 0.00 3.02
84 85 7.482169 AAGATGATTTACACACCTAGACAGA 57.518 36.000 0.00 0.00 0.00 3.41
85 86 7.432545 CGTAAGATGATTTACACACCTAGACAG 59.567 40.741 0.00 0.00 43.02 3.51
86 87 7.121611 TCGTAAGATGATTTACACACCTAGACA 59.878 37.037 0.00 0.00 45.01 3.41
87 88 7.478322 TCGTAAGATGATTTACACACCTAGAC 58.522 38.462 0.00 0.00 45.01 2.59
88 89 7.634671 TCGTAAGATGATTTACACACCTAGA 57.365 36.000 0.00 0.00 45.01 2.43
115 116 8.576442 CGCCTAAGTATTTTGGGATTATTTGAT 58.424 33.333 0.99 0.00 30.91 2.57
116 117 7.469456 GCGCCTAAGTATTTTGGGATTATTTGA 60.469 37.037 0.00 0.00 30.91 2.69
117 118 6.640907 GCGCCTAAGTATTTTGGGATTATTTG 59.359 38.462 0.00 0.00 30.91 2.32
118 119 6.514376 CGCGCCTAAGTATTTTGGGATTATTT 60.514 38.462 0.00 0.00 30.91 1.40
119 120 5.048991 CGCGCCTAAGTATTTTGGGATTATT 60.049 40.000 0.00 0.00 30.91 1.40
120 121 4.454504 CGCGCCTAAGTATTTTGGGATTAT 59.545 41.667 0.00 0.00 30.91 1.28
121 122 3.810941 CGCGCCTAAGTATTTTGGGATTA 59.189 43.478 0.00 0.00 30.91 1.75
122 123 2.616842 CGCGCCTAAGTATTTTGGGATT 59.383 45.455 0.00 0.00 30.91 3.01
123 124 2.218603 CGCGCCTAAGTATTTTGGGAT 58.781 47.619 0.00 0.00 30.91 3.85
124 125 1.658994 CGCGCCTAAGTATTTTGGGA 58.341 50.000 0.00 0.00 30.91 4.37
125 126 0.661020 CCGCGCCTAAGTATTTTGGG 59.339 55.000 0.00 0.00 30.91 4.12
126 127 1.375551 ACCGCGCCTAAGTATTTTGG 58.624 50.000 0.00 0.00 33.04 3.28
127 128 2.931325 TGTACCGCGCCTAAGTATTTTG 59.069 45.455 0.00 0.00 0.00 2.44
128 129 3.249986 TGTACCGCGCCTAAGTATTTT 57.750 42.857 0.00 0.00 0.00 1.82
129 130 2.965572 TGTACCGCGCCTAAGTATTT 57.034 45.000 0.00 0.00 0.00 1.40
130 131 3.464111 AATGTACCGCGCCTAAGTATT 57.536 42.857 0.00 0.00 0.00 1.89
131 132 4.038402 AGTTAATGTACCGCGCCTAAGTAT 59.962 41.667 0.00 0.00 0.00 2.12
132 133 3.381272 AGTTAATGTACCGCGCCTAAGTA 59.619 43.478 0.00 0.00 0.00 2.24
133 134 2.167075 AGTTAATGTACCGCGCCTAAGT 59.833 45.455 0.00 0.00 0.00 2.24
134 135 2.793232 GAGTTAATGTACCGCGCCTAAG 59.207 50.000 0.00 0.00 0.00 2.18
135 136 2.428171 AGAGTTAATGTACCGCGCCTAA 59.572 45.455 0.00 0.00 0.00 2.69
136 137 2.026641 AGAGTTAATGTACCGCGCCTA 58.973 47.619 0.00 0.00 0.00 3.93
137 138 0.822164 AGAGTTAATGTACCGCGCCT 59.178 50.000 0.00 0.00 0.00 5.52
138 139 1.206523 GAGAGTTAATGTACCGCGCC 58.793 55.000 0.00 0.00 0.00 6.53
139 140 1.917273 TGAGAGTTAATGTACCGCGC 58.083 50.000 0.00 0.00 0.00 6.86
140 141 4.317139 CGAAATGAGAGTTAATGTACCGCG 60.317 45.833 0.00 0.00 0.00 6.46
141 142 4.565564 ACGAAATGAGAGTTAATGTACCGC 59.434 41.667 0.00 0.00 0.00 5.68
142 143 6.642683 AACGAAATGAGAGTTAATGTACCG 57.357 37.500 0.00 0.00 0.00 4.02
143 144 8.252964 AGAAACGAAATGAGAGTTAATGTACC 57.747 34.615 0.00 0.00 0.00 3.34
144 145 9.530129 CAAGAAACGAAATGAGAGTTAATGTAC 57.470 33.333 0.00 0.00 0.00 2.90
145 146 9.268268 ACAAGAAACGAAATGAGAGTTAATGTA 57.732 29.630 0.00 0.00 0.00 2.29
146 147 8.154649 ACAAGAAACGAAATGAGAGTTAATGT 57.845 30.769 0.00 0.00 0.00 2.71
147 148 9.450807 AAACAAGAAACGAAATGAGAGTTAATG 57.549 29.630 0.00 0.00 0.00 1.90
148 149 9.665264 GAAACAAGAAACGAAATGAGAGTTAAT 57.335 29.630 0.00 0.00 0.00 1.40
149 150 7.849026 CGAAACAAGAAACGAAATGAGAGTTAA 59.151 33.333 0.00 0.00 0.00 2.01
150 151 7.010738 ACGAAACAAGAAACGAAATGAGAGTTA 59.989 33.333 0.00 0.00 0.00 2.24
151 152 6.183360 ACGAAACAAGAAACGAAATGAGAGTT 60.183 34.615 0.00 0.00 0.00 3.01
152 153 5.293569 ACGAAACAAGAAACGAAATGAGAGT 59.706 36.000 0.00 0.00 0.00 3.24
153 154 5.617187 CACGAAACAAGAAACGAAATGAGAG 59.383 40.000 0.00 0.00 0.00 3.20
154 155 5.292345 TCACGAAACAAGAAACGAAATGAGA 59.708 36.000 0.00 0.00 0.00 3.27
155 156 5.392585 GTCACGAAACAAGAAACGAAATGAG 59.607 40.000 0.00 0.00 0.00 2.90
156 157 5.163844 TGTCACGAAACAAGAAACGAAATGA 60.164 36.000 0.00 0.00 0.00 2.57
157 158 5.025190 TGTCACGAAACAAGAAACGAAATG 58.975 37.500 0.00 0.00 0.00 2.32
158 159 5.224562 TGTCACGAAACAAGAAACGAAAT 57.775 34.783 0.00 0.00 0.00 2.17
159 160 4.665281 TGTCACGAAACAAGAAACGAAA 57.335 36.364 0.00 0.00 0.00 3.46
160 161 4.868450 ATGTCACGAAACAAGAAACGAA 57.132 36.364 0.00 0.00 31.81 3.85
161 162 5.692654 TGATATGTCACGAAACAAGAAACGA 59.307 36.000 0.00 0.00 31.81 3.85
162 163 5.911421 TGATATGTCACGAAACAAGAAACG 58.089 37.500 0.00 0.00 31.81 3.60
163 164 6.577427 GGTTGATATGTCACGAAACAAGAAAC 59.423 38.462 0.00 0.00 33.11 2.78
164 165 6.261158 TGGTTGATATGTCACGAAACAAGAAA 59.739 34.615 0.00 0.00 33.11 2.52
165 166 5.760743 TGGTTGATATGTCACGAAACAAGAA 59.239 36.000 0.00 0.00 33.11 2.52
166 167 5.301555 TGGTTGATATGTCACGAAACAAGA 58.698 37.500 0.00 0.00 33.11 3.02
167 168 5.605564 TGGTTGATATGTCACGAAACAAG 57.394 39.130 0.00 0.00 33.11 3.16
168 169 6.567687 ATTGGTTGATATGTCACGAAACAA 57.432 33.333 0.00 0.00 33.11 2.83
169 170 7.604545 TCTTATTGGTTGATATGTCACGAAACA 59.395 33.333 0.00 0.00 33.11 2.83
170 171 7.970384 TCTTATTGGTTGATATGTCACGAAAC 58.030 34.615 0.00 0.00 33.11 2.78
171 172 8.038351 TCTCTTATTGGTTGATATGTCACGAAA 58.962 33.333 0.00 0.00 33.11 3.46
172 173 7.552459 TCTCTTATTGGTTGATATGTCACGAA 58.448 34.615 0.00 0.00 33.11 3.85
173 174 7.107639 TCTCTTATTGGTTGATATGTCACGA 57.892 36.000 0.00 0.00 33.11 4.35
174 175 7.439356 ACATCTCTTATTGGTTGATATGTCACG 59.561 37.037 0.00 0.00 33.11 4.35
175 176 8.554528 CACATCTCTTATTGGTTGATATGTCAC 58.445 37.037 0.00 0.00 33.11 3.67
176 177 7.716560 CCACATCTCTTATTGGTTGATATGTCA 59.283 37.037 0.00 0.00 29.24 3.58
177 178 7.173907 CCCACATCTCTTATTGGTTGATATGTC 59.826 40.741 0.00 0.00 29.24 3.06
178 179 7.000472 CCCACATCTCTTATTGGTTGATATGT 59.000 38.462 0.00 0.00 30.96 2.29
179 180 6.072286 GCCCACATCTCTTATTGGTTGATATG 60.072 42.308 0.00 0.00 0.00 1.78
180 181 6.006449 GCCCACATCTCTTATTGGTTGATAT 58.994 40.000 0.00 0.00 0.00 1.63
181 182 5.376625 GCCCACATCTCTTATTGGTTGATA 58.623 41.667 0.00 0.00 0.00 2.15
182 183 4.210331 GCCCACATCTCTTATTGGTTGAT 58.790 43.478 0.00 0.00 0.00 2.57
183 184 3.620488 GCCCACATCTCTTATTGGTTGA 58.380 45.455 0.00 0.00 0.00 3.18
184 185 2.689983 GGCCCACATCTCTTATTGGTTG 59.310 50.000 0.00 0.00 0.00 3.77
185 186 2.311542 TGGCCCACATCTCTTATTGGTT 59.688 45.455 0.00 0.00 0.00 3.67
186 187 1.922447 TGGCCCACATCTCTTATTGGT 59.078 47.619 0.00 0.00 0.00 3.67
187 188 2.734755 TGGCCCACATCTCTTATTGG 57.265 50.000 0.00 0.00 0.00 3.16
188 189 2.295349 GCATGGCCCACATCTCTTATTG 59.705 50.000 0.00 0.00 37.84 1.90
189 190 2.091720 TGCATGGCCCACATCTCTTATT 60.092 45.455 0.00 0.00 37.84 1.40
190 191 1.496001 TGCATGGCCCACATCTCTTAT 59.504 47.619 0.00 0.00 37.84 1.73
191 192 0.918258 TGCATGGCCCACATCTCTTA 59.082 50.000 0.00 0.00 37.84 2.10
192 193 0.260816 ATGCATGGCCCACATCTCTT 59.739 50.000 0.00 0.00 37.84 2.85
193 194 0.467474 CATGCATGGCCCACATCTCT 60.467 55.000 19.40 0.00 37.84 3.10
194 195 2.038690 CATGCATGGCCCACATCTC 58.961 57.895 19.40 0.00 37.84 2.75
195 196 2.131709 GCATGCATGGCCCACATCT 61.132 57.895 27.34 0.00 37.84 2.90
196 197 1.682451 AAGCATGCATGGCCCACATC 61.682 55.000 27.34 8.57 37.84 3.06
197 198 1.268992 AAAGCATGCATGGCCCACAT 61.269 50.000 27.34 0.98 41.57 3.21
198 199 0.614134 TAAAGCATGCATGGCCCACA 60.614 50.000 27.34 0.00 0.00 4.17
199 200 0.536260 TTAAAGCATGCATGGCCCAC 59.464 50.000 27.34 10.75 0.00 4.61
200 201 1.273759 TTTAAAGCATGCATGGCCCA 58.726 45.000 27.34 5.95 0.00 5.36
201 202 2.158928 TCATTTAAAGCATGCATGGCCC 60.159 45.455 27.34 11.50 0.00 5.80
202 203 3.182341 TCATTTAAAGCATGCATGGCC 57.818 42.857 27.34 12.23 0.00 5.36
203 204 5.294799 TCAAATCATTTAAAGCATGCATGGC 59.705 36.000 27.34 18.86 0.00 4.40
204 205 6.759356 TCTCAAATCATTTAAAGCATGCATGG 59.241 34.615 27.34 10.03 0.00 3.66
205 206 7.491372 AGTCTCAAATCATTTAAAGCATGCATG 59.509 33.333 22.70 22.70 0.00 4.06
206 207 7.553334 AGTCTCAAATCATTTAAAGCATGCAT 58.447 30.769 21.98 4.57 0.00 3.96
207 208 6.927416 AGTCTCAAATCATTTAAAGCATGCA 58.073 32.000 21.98 0.00 0.00 3.96
208 209 9.178427 GATAGTCTCAAATCATTTAAAGCATGC 57.822 33.333 10.51 10.51 0.00 4.06
224 225 4.594123 TGTCCGTGTTTGATAGTCTCAA 57.406 40.909 0.00 0.00 42.15 3.02
225 226 4.494484 CATGTCCGTGTTTGATAGTCTCA 58.506 43.478 0.00 0.00 0.00 3.27
226 227 3.307242 GCATGTCCGTGTTTGATAGTCTC 59.693 47.826 0.00 0.00 0.00 3.36
227 228 3.262420 GCATGTCCGTGTTTGATAGTCT 58.738 45.455 0.00 0.00 0.00 3.24
228 229 3.000041 TGCATGTCCGTGTTTGATAGTC 59.000 45.455 0.00 0.00 0.00 2.59
229 230 3.052455 TGCATGTCCGTGTTTGATAGT 57.948 42.857 0.00 0.00 0.00 2.12
230 231 4.345288 CAATGCATGTCCGTGTTTGATAG 58.655 43.478 0.00 0.00 0.00 2.08
231 232 3.128415 CCAATGCATGTCCGTGTTTGATA 59.872 43.478 0.00 0.00 0.00 2.15
232 233 2.094597 CCAATGCATGTCCGTGTTTGAT 60.095 45.455 0.00 0.00 0.00 2.57
233 234 1.269174 CCAATGCATGTCCGTGTTTGA 59.731 47.619 0.00 0.00 0.00 2.69
234 235 1.000385 ACCAATGCATGTCCGTGTTTG 60.000 47.619 0.00 0.00 0.00 2.93
235 236 1.327303 ACCAATGCATGTCCGTGTTT 58.673 45.000 0.00 0.00 0.00 2.83
236 237 1.327303 AACCAATGCATGTCCGTGTT 58.673 45.000 0.00 0.00 0.00 3.32
237 238 2.083774 CTAACCAATGCATGTCCGTGT 58.916 47.619 0.00 0.00 0.00 4.49
238 239 2.083774 ACTAACCAATGCATGTCCGTG 58.916 47.619 0.00 0.00 0.00 4.94
239 240 2.489938 ACTAACCAATGCATGTCCGT 57.510 45.000 0.00 0.00 0.00 4.69
240 241 2.746904 TGAACTAACCAATGCATGTCCG 59.253 45.455 0.00 0.00 0.00 4.79
241 242 4.989279 ATGAACTAACCAATGCATGTCC 57.011 40.909 0.00 0.00 0.00 4.02
242 243 4.563976 GCAATGAACTAACCAATGCATGTC 59.436 41.667 0.00 0.00 39.51 3.06
243 244 4.021280 TGCAATGAACTAACCAATGCATGT 60.021 37.500 0.00 0.00 43.15 3.21
244 245 4.496360 TGCAATGAACTAACCAATGCATG 58.504 39.130 0.00 0.00 43.15 4.06
245 246 4.804868 TGCAATGAACTAACCAATGCAT 57.195 36.364 0.00 0.00 43.15 3.96
261 262 8.890124 TGCTAATTAATAACAATGCATGCAAT 57.110 26.923 26.68 14.74 0.00 3.56
262 263 8.713737 TTGCTAATTAATAACAATGCATGCAA 57.286 26.923 26.68 8.17 32.86 4.08
263 264 8.713737 TTTGCTAATTAATAACAATGCATGCA 57.286 26.923 25.04 25.04 0.00 3.96
281 282 8.443160 CGAGAGAACTTAATGTGATTTTGCTAA 58.557 33.333 0.00 0.00 0.00 3.09
282 283 7.602644 ACGAGAGAACTTAATGTGATTTTGCTA 59.397 33.333 0.00 0.00 0.00 3.49
283 284 6.428159 ACGAGAGAACTTAATGTGATTTTGCT 59.572 34.615 0.00 0.00 0.00 3.91
284 285 6.603095 ACGAGAGAACTTAATGTGATTTTGC 58.397 36.000 0.00 0.00 0.00 3.68
285 286 9.450807 AAAACGAGAGAACTTAATGTGATTTTG 57.549 29.630 0.00 0.00 0.00 2.44
286 287 9.665264 GAAAACGAGAGAACTTAATGTGATTTT 57.335 29.630 0.00 0.00 0.00 1.82
287 288 8.290325 GGAAAACGAGAGAACTTAATGTGATTT 58.710 33.333 0.00 0.00 0.00 2.17
288 289 7.094762 GGGAAAACGAGAGAACTTAATGTGATT 60.095 37.037 0.00 0.00 0.00 2.57
289 290 6.371825 GGGAAAACGAGAGAACTTAATGTGAT 59.628 38.462 0.00 0.00 0.00 3.06
290 291 5.699458 GGGAAAACGAGAGAACTTAATGTGA 59.301 40.000 0.00 0.00 0.00 3.58
291 292 5.106673 GGGGAAAACGAGAGAACTTAATGTG 60.107 44.000 0.00 0.00 0.00 3.21
292 293 5.001874 GGGGAAAACGAGAGAACTTAATGT 58.998 41.667 0.00 0.00 0.00 2.71
293 294 5.246307 AGGGGAAAACGAGAGAACTTAATG 58.754 41.667 0.00 0.00 0.00 1.90
294 295 5.489249 GAGGGGAAAACGAGAGAACTTAAT 58.511 41.667 0.00 0.00 0.00 1.40
295 296 4.262765 GGAGGGGAAAACGAGAGAACTTAA 60.263 45.833 0.00 0.00 0.00 1.85
296 297 3.260128 GGAGGGGAAAACGAGAGAACTTA 59.740 47.826 0.00 0.00 0.00 2.24
297 298 2.038689 GGAGGGGAAAACGAGAGAACTT 59.961 50.000 0.00 0.00 0.00 2.66
298 299 1.624312 GGAGGGGAAAACGAGAGAACT 59.376 52.381 0.00 0.00 0.00 3.01
299 300 1.346722 TGGAGGGGAAAACGAGAGAAC 59.653 52.381 0.00 0.00 0.00 3.01
300 301 1.346722 GTGGAGGGGAAAACGAGAGAA 59.653 52.381 0.00 0.00 0.00 2.87
301 302 0.974383 GTGGAGGGGAAAACGAGAGA 59.026 55.000 0.00 0.00 0.00 3.10
302 303 0.036294 GGTGGAGGGGAAAACGAGAG 60.036 60.000 0.00 0.00 0.00 3.20
303 304 0.473117 AGGTGGAGGGGAAAACGAGA 60.473 55.000 0.00 0.00 0.00 4.04
304 305 0.400594 AAGGTGGAGGGGAAAACGAG 59.599 55.000 0.00 0.00 0.00 4.18
305 306 0.109723 CAAGGTGGAGGGGAAAACGA 59.890 55.000 0.00 0.00 0.00 3.85
306 307 0.893727 CCAAGGTGGAGGGGAAAACG 60.894 60.000 0.00 0.00 40.96 3.60
307 308 0.187606 ACCAAGGTGGAGGGGAAAAC 59.812 55.000 0.18 0.00 40.96 2.43
308 309 0.481128 GACCAAGGTGGAGGGGAAAA 59.519 55.000 0.18 0.00 40.96 2.29
309 310 0.699577 TGACCAAGGTGGAGGGGAAA 60.700 55.000 0.18 0.00 40.96 3.13
310 311 0.477597 ATGACCAAGGTGGAGGGGAA 60.478 55.000 0.18 0.00 40.96 3.97
311 312 1.163309 ATGACCAAGGTGGAGGGGA 59.837 57.895 0.18 0.00 40.96 4.81
312 313 1.304282 CATGACCAAGGTGGAGGGG 59.696 63.158 0.18 0.00 40.96 4.79
313 314 1.304282 CCATGACCAAGGTGGAGGG 59.696 63.158 0.18 0.00 40.96 4.30
314 315 2.078452 ACCATGACCAAGGTGGAGG 58.922 57.895 0.18 0.00 40.96 4.30
319 320 2.672996 GCGCACCATGACCAAGGT 60.673 61.111 0.30 0.00 39.10 3.50
320 321 2.267351 TTGCGCACCATGACCAAGG 61.267 57.895 11.12 0.00 0.00 3.61
321 322 1.081242 GTTGCGCACCATGACCAAG 60.081 57.895 11.12 0.00 0.00 3.61
322 323 2.902419 CGTTGCGCACCATGACCAA 61.902 57.895 11.12 0.00 0.00 3.67
323 324 2.717139 TACGTTGCGCACCATGACCA 62.717 55.000 11.12 0.00 0.00 4.02
324 325 1.570347 TTACGTTGCGCACCATGACC 61.570 55.000 11.12 0.00 0.00 4.02
325 326 0.236187 TTTACGTTGCGCACCATGAC 59.764 50.000 11.12 3.85 0.00 3.06
326 327 0.945099 TTTTACGTTGCGCACCATGA 59.055 45.000 11.12 0.00 0.00 3.07
327 328 1.648191 CATTTTACGTTGCGCACCATG 59.352 47.619 11.12 4.27 0.00 3.66
328 329 1.537638 TCATTTTACGTTGCGCACCAT 59.462 42.857 11.12 0.00 0.00 3.55
329 330 0.945099 TCATTTTACGTTGCGCACCA 59.055 45.000 11.12 0.00 0.00 4.17
330 331 1.069500 AGTCATTTTACGTTGCGCACC 60.069 47.619 11.12 0.16 0.00 5.01
331 332 2.309898 AGTCATTTTACGTTGCGCAC 57.690 45.000 11.12 4.51 0.00 5.34
332 333 3.247886 TGTAAGTCATTTTACGTTGCGCA 59.752 39.130 5.66 5.66 36.54 6.09
333 334 3.596562 GTGTAAGTCATTTTACGTTGCGC 59.403 43.478 0.00 0.00 36.54 6.09
334 335 4.605594 GTGTGTAAGTCATTTTACGTTGCG 59.394 41.667 0.00 0.00 36.54 4.85
335 336 4.907582 GGTGTGTAAGTCATTTTACGTTGC 59.092 41.667 0.00 0.00 36.54 4.17
336 337 6.295039 AGGTGTGTAAGTCATTTTACGTTG 57.705 37.500 0.00 0.00 36.54 4.10
337 338 7.383300 GTCTAGGTGTGTAAGTCATTTTACGTT 59.617 37.037 0.00 0.00 36.54 3.99
338 339 6.865205 GTCTAGGTGTGTAAGTCATTTTACGT 59.135 38.462 0.00 0.00 36.54 3.57
339 340 6.033196 CGTCTAGGTGTGTAAGTCATTTTACG 59.967 42.308 0.00 0.00 36.54 3.18
340 341 6.309737 CCGTCTAGGTGTGTAAGTCATTTTAC 59.690 42.308 0.00 0.00 33.42 2.01
341 342 6.209192 TCCGTCTAGGTGTGTAAGTCATTTTA 59.791 38.462 0.00 0.00 41.99 1.52
342 343 5.011329 TCCGTCTAGGTGTGTAAGTCATTTT 59.989 40.000 0.00 0.00 41.99 1.82
343 344 4.525487 TCCGTCTAGGTGTGTAAGTCATTT 59.475 41.667 0.00 0.00 41.99 2.32
344 345 4.084287 TCCGTCTAGGTGTGTAAGTCATT 58.916 43.478 0.00 0.00 41.99 2.57
345 346 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
346 347 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
347 348 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
348 349 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
349 350 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
350 351 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
351 352 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
352 353 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
353 354 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
354 355 1.293062 TACTCCCTCCGTCTAGGTGT 58.707 55.000 0.00 0.00 41.99 4.16
355 356 2.431954 TTACTCCCTCCGTCTAGGTG 57.568 55.000 0.00 0.00 41.99 4.00
356 357 4.106019 ACATATTACTCCCTCCGTCTAGGT 59.894 45.833 0.00 0.00 41.99 3.08
357 358 4.664392 ACATATTACTCCCTCCGTCTAGG 58.336 47.826 0.00 0.00 42.97 3.02
358 359 6.941436 AGTAACATATTACTCCCTCCGTCTAG 59.059 42.308 0.00 0.00 46.73 2.43
359 360 6.713903 CAGTAACATATTACTCCCTCCGTCTA 59.286 42.308 0.00 0.00 46.73 2.59
360 361 5.535406 CAGTAACATATTACTCCCTCCGTCT 59.465 44.000 0.00 0.00 46.73 4.18
361 362 5.301298 ACAGTAACATATTACTCCCTCCGTC 59.699 44.000 0.00 0.00 46.73 4.79
362 363 5.206587 ACAGTAACATATTACTCCCTCCGT 58.793 41.667 0.00 0.00 46.73 4.69
363 364 5.786264 ACAGTAACATATTACTCCCTCCG 57.214 43.478 0.00 0.00 46.73 4.63
364 365 8.015185 TGTTACAGTAACATATTACTCCCTCC 57.985 38.462 20.32 0.00 46.73 4.30
377 378 7.570507 CTTGAAAAGCGCTATGTTACAGTAACA 60.571 37.037 25.09 25.09 44.55 2.41
378 379 6.160664 TGAAAAGCGCTATGTTACAGTAAC 57.839 37.500 12.05 15.58 39.11 2.50
379 380 6.647481 TCTTGAAAAGCGCTATGTTACAGTAA 59.353 34.615 12.05 0.00 45.70 2.24
380 381 6.090358 GTCTTGAAAAGCGCTATGTTACAGTA 59.910 38.462 12.05 0.00 45.70 2.74
381 382 4.994852 TCTTGAAAAGCGCTATGTTACAGT 59.005 37.500 12.05 0.00 45.70 3.55
382 383 5.107104 TGTCTTGAAAAGCGCTATGTTACAG 60.107 40.000 12.05 5.30 45.70 2.74
383 384 4.752604 TGTCTTGAAAAGCGCTATGTTACA 59.247 37.500 12.05 7.09 45.70 2.41
384 385 5.277601 TGTCTTGAAAAGCGCTATGTTAC 57.722 39.130 12.05 4.27 45.70 2.50
385 386 5.699001 TCTTGTCTTGAAAAGCGCTATGTTA 59.301 36.000 12.05 0.00 45.70 2.41
386 387 4.515191 TCTTGTCTTGAAAAGCGCTATGTT 59.485 37.500 12.05 5.31 45.70 2.71
387 388 4.065088 TCTTGTCTTGAAAAGCGCTATGT 58.935 39.130 12.05 0.00 45.70 2.29
388 389 4.668576 TCTTGTCTTGAAAAGCGCTATG 57.331 40.909 12.05 0.00 45.70 2.23
389 390 4.937620 TCATCTTGTCTTGAAAAGCGCTAT 59.062 37.500 12.05 1.76 45.70 2.97
390 391 4.314961 TCATCTTGTCTTGAAAAGCGCTA 58.685 39.130 12.05 0.00 45.70 4.26
391 392 3.141398 TCATCTTGTCTTGAAAAGCGCT 58.859 40.909 2.64 2.64 45.70 5.92
392 393 3.058639 ACTCATCTTGTCTTGAAAAGCGC 60.059 43.478 0.00 0.00 45.70 5.92
393 394 4.450419 AGACTCATCTTGTCTTGAAAAGCG 59.550 41.667 0.00 0.00 45.70 4.68
394 395 5.938438 AGACTCATCTTGTCTTGAAAAGC 57.062 39.130 0.00 0.00 45.70 3.51
395 396 9.875675 CTTTTAGACTCATCTTGTCTTGAAAAG 57.124 33.333 13.00 13.00 41.45 2.27
396 397 8.345565 GCTTTTAGACTCATCTTGTCTTGAAAA 58.654 33.333 1.67 3.83 41.45 2.29
397 398 7.716998 AGCTTTTAGACTCATCTTGTCTTGAAA 59.283 33.333 1.67 4.14 41.45 2.69
398 399 7.220030 AGCTTTTAGACTCATCTTGTCTTGAA 58.780 34.615 1.67 0.00 41.45 2.69
399 400 6.763355 AGCTTTTAGACTCATCTTGTCTTGA 58.237 36.000 1.67 0.00 41.45 3.02
400 401 8.539770 TTAGCTTTTAGACTCATCTTGTCTTG 57.460 34.615 0.00 0.00 41.45 3.02
401 402 9.732130 AATTAGCTTTTAGACTCATCTTGTCTT 57.268 29.630 0.00 0.00 41.45 3.01
420 421 9.905713 TGTCATAAAGGACTTCATTAATTAGCT 57.094 29.630 0.00 0.00 38.61 3.32
421 422 9.937175 GTGTCATAAAGGACTTCATTAATTAGC 57.063 33.333 0.00 0.00 38.61 3.09
428 429 9.036980 AGTAGTAGTGTCATAAAGGACTTCATT 57.963 33.333 0.00 0.00 38.61 2.57
429 430 8.596781 AGTAGTAGTGTCATAAAGGACTTCAT 57.403 34.615 0.00 0.00 38.61 2.57
430 431 9.696572 ATAGTAGTAGTGTCATAAAGGACTTCA 57.303 33.333 0.00 0.00 38.61 3.02
464 465 9.409918 AGTCTAAGTTACTATCTTCATAGTGCA 57.590 33.333 5.12 0.00 44.33 4.57
471 472 9.955102 TGTCACTAGTCTAAGTTACTATCTTCA 57.045 33.333 0.00 0.00 0.00 3.02
482 483 9.628500 TGTCATACATATGTCACTAGTCTAAGT 57.372 33.333 12.68 0.00 35.26 2.24
483 484 9.885934 GTGTCATACATATGTCACTAGTCTAAG 57.114 37.037 12.68 0.00 44.04 2.18
492 493 9.885934 CTTAGACTAGTGTCATACATATGTCAC 57.114 37.037 12.68 13.81 46.11 3.67
493 494 9.628500 ACTTAGACTAGTGTCATACATATGTCA 57.372 33.333 12.68 0.79 45.20 3.58
499 500 9.122779 GGAGTAACTTAGACTAGTGTCATACAT 57.877 37.037 0.00 0.00 45.20 2.29
500 501 7.555554 GGGAGTAACTTAGACTAGTGTCATACA 59.444 40.741 0.00 0.00 45.20 2.29
501 502 7.013178 GGGGAGTAACTTAGACTAGTGTCATAC 59.987 44.444 0.00 0.00 45.20 2.39
502 503 7.059156 GGGGAGTAACTTAGACTAGTGTCATA 58.941 42.308 0.00 0.00 45.20 2.15
503 504 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
504 505 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
505 506 5.259632 TGGGGAGTAACTTAGACTAGTGTC 58.740 45.833 0.00 0.00 43.22 3.67
506 507 5.222296 ACTGGGGAGTAACTTAGACTAGTGT 60.222 44.000 0.00 0.00 0.00 3.55
507 508 5.262804 ACTGGGGAGTAACTTAGACTAGTG 58.737 45.833 0.00 0.00 0.00 2.74
508 509 5.533333 ACTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
509 510 7.229106 GTCATACTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 0.00 2.57
510 511 7.059156 GTCATACTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 0.00 2.59
511 512 5.892686 GTCATACTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 0.00 3.24
512 513 5.068855 GGTCATACTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 0.00 2.59
513 514 5.206587 GGTCATACTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
514 515 4.960469 TGGTCATACTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
515 516 4.950361 TGGTCATACTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
516 517 3.775316 CTGGTCATACTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
517 518 3.375699 CTGGTCATACTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
518 519 2.158943 GCTGGTCATACTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
519 520 2.116238 GCTGGTCATACTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
520 521 1.691482 GGCTGGTCATACTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
521 522 0.983378 GGCTGGTCATACTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
522 523 0.692419 AGGCTGGTCATACTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
523 524 0.639943 TAGGCTGGTCATACTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
524 525 1.141053 GTTAGGCTGGTCATACTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
525 526 1.837439 TGTTAGGCTGGTCATACTGGG 59.163 52.381 0.00 0.00 0.00 4.45
526 527 2.766263 TCTGTTAGGCTGGTCATACTGG 59.234 50.000 0.00 0.00 0.00 4.00
527 528 3.735208 CGTCTGTTAGGCTGGTCATACTG 60.735 52.174 0.00 0.00 0.00 2.74
528 529 2.427453 CGTCTGTTAGGCTGGTCATACT 59.573 50.000 0.00 0.00 0.00 2.12
529 530 2.810650 CGTCTGTTAGGCTGGTCATAC 58.189 52.381 0.00 0.00 0.00 2.39
530 531 1.136305 GCGTCTGTTAGGCTGGTCATA 59.864 52.381 0.00 0.00 36.05 2.15
531 532 0.108138 GCGTCTGTTAGGCTGGTCAT 60.108 55.000 0.00 0.00 36.05 3.06
532 533 1.292223 GCGTCTGTTAGGCTGGTCA 59.708 57.895 0.00 0.00 36.05 4.02
533 534 1.448013 GGCGTCTGTTAGGCTGGTC 60.448 63.158 0.00 0.00 39.02 4.02
534 535 2.172483 CTGGCGTCTGTTAGGCTGGT 62.172 60.000 0.00 0.00 39.02 4.00
535 536 1.448540 CTGGCGTCTGTTAGGCTGG 60.449 63.158 0.00 0.00 39.02 4.85
536 537 1.448540 CCTGGCGTCTGTTAGGCTG 60.449 63.158 0.00 0.00 39.02 4.85
537 538 2.660064 CCCTGGCGTCTGTTAGGCT 61.660 63.158 0.00 0.00 39.02 4.58
538 539 2.125106 CCCTGGCGTCTGTTAGGC 60.125 66.667 0.00 0.00 38.28 3.93
539 540 1.517832 CTCCCTGGCGTCTGTTAGG 59.482 63.158 0.00 0.00 0.00 2.69
546 547 0.832135 TATGATCCCTCCCTGGCGTC 60.832 60.000 0.00 0.00 0.00 5.19
565 566 1.140652 GGCTTAGCTGCTTCTCCTGAT 59.859 52.381 7.79 0.00 0.00 2.90
879 917 4.148825 AGGACGGATCGCAGGTGC 62.149 66.667 0.00 0.00 37.78 5.01
1064 1121 2.480244 CGCTTCTTCCTGTCGATCATCA 60.480 50.000 0.00 0.00 0.00 3.07
1333 1390 7.284944 AGACATAGTAGTACATACCTGGTTGAC 59.715 40.741 3.84 0.00 34.67 3.18
1346 1403 7.326789 CGTAGTAGAGCAGAGACATAGTAGTAC 59.673 44.444 0.00 0.00 0.00 2.73
1350 1407 6.159299 ACGTAGTAGAGCAGAGACATAGTA 57.841 41.667 0.00 0.00 41.94 1.82
1385 1442 2.509336 CGGAGAGCACGGCGAAAT 60.509 61.111 16.62 0.00 0.00 2.17
1435 1495 3.573491 GACCGCGCATTAGCCACC 61.573 66.667 8.75 0.00 37.52 4.61
1462 1522 2.844451 GCACGGACAGGCAAAGCAA 61.844 57.895 0.00 0.00 0.00 3.91
1463 1523 3.286751 GCACGGACAGGCAAAGCA 61.287 61.111 0.00 0.00 0.00 3.91
1464 1524 3.259425 CTGCACGGACAGGCAAAGC 62.259 63.158 0.00 0.00 39.93 3.51
1465 1525 2.949106 CTGCACGGACAGGCAAAG 59.051 61.111 0.00 0.00 39.93 2.77
1466 1526 3.286751 GCTGCACGGACAGGCAAA 61.287 61.111 8.76 0.00 39.93 3.68
1467 1527 4.254709 AGCTGCACGGACAGGCAA 62.255 61.111 1.02 0.00 39.93 4.52
1468 1528 4.994471 CAGCTGCACGGACAGGCA 62.994 66.667 0.00 0.00 38.16 4.75
1470 1530 3.947132 CTCCAGCTGCACGGACAGG 62.947 68.421 8.66 0.00 38.16 4.00
1471 1531 2.433838 CTCCAGCTGCACGGACAG 60.434 66.667 8.66 2.80 40.80 3.51
1910 1978 0.456312 ATCACGTCGGCGAGTTCTTC 60.456 55.000 20.03 0.00 42.00 2.87
1914 1982 2.202440 CGATCACGTCGGCGAGTT 60.202 61.111 20.03 2.26 46.47 3.01
1932 2000 2.408271 ACACTGATCCGTTGCATGAT 57.592 45.000 0.00 0.00 0.00 2.45
1933 2001 2.076100 GAACACTGATCCGTTGCATGA 58.924 47.619 0.00 0.00 0.00 3.07
1942 2010 1.654105 CTGCGTTACGAACACTGATCC 59.346 52.381 9.62 0.00 0.00 3.36
1951 2020 1.538512 AGTAGTGCTCTGCGTTACGAA 59.461 47.619 9.62 0.00 0.00 3.85
2016 2094 1.029408 TACCACCATCGGTTGCATGC 61.029 55.000 11.82 11.82 40.67 4.06
2017 2095 0.732571 GTACCACCATCGGTTGCATG 59.267 55.000 0.00 0.00 40.67 4.06
2018 2096 0.742990 CGTACCACCATCGGTTGCAT 60.743 55.000 0.00 0.00 40.67 3.96
2019 2097 1.374885 CGTACCACCATCGGTTGCA 60.375 57.895 0.00 0.00 40.67 4.08
2100 2194 2.001159 GTGCTGACTGCTGATTGAGAG 58.999 52.381 5.87 0.00 43.37 3.20
2172 2273 0.978151 ATTACACGGTGTGCCAGGTA 59.022 50.000 23.36 0.00 36.98 3.08
2173 2274 0.321298 GATTACACGGTGTGCCAGGT 60.321 55.000 23.36 3.21 36.98 4.00
2174 2275 1.024579 GGATTACACGGTGTGCCAGG 61.025 60.000 23.36 0.00 36.98 4.45
2176 2277 1.374885 CGGATTACACGGTGTGCCA 60.375 57.895 23.36 7.95 36.98 4.92
2177 2278 1.356527 GACGGATTACACGGTGTGCC 61.357 60.000 23.36 18.68 36.98 5.01
2178 2279 1.680105 CGACGGATTACACGGTGTGC 61.680 60.000 23.36 12.13 36.98 4.57
2206 2307 9.739276 ATTGATCTCTATGAGTTTGGTTTTGTA 57.261 29.630 0.00 0.00 0.00 2.41
2220 2321 7.658167 ACTTGCATCTGAAGATTGATCTCTATG 59.342 37.037 0.00 0.00 35.76 2.23
2268 2377 3.316868 CACATGATGAACAGCCATGCATA 59.683 43.478 0.00 0.00 40.81 3.14
2330 2448 0.395862 TTGCGTCCCAAGGAACCAAA 60.396 50.000 0.00 0.00 31.38 3.28
2515 2655 1.216175 TGGCCTGTACTATCCCGTACT 59.784 52.381 3.32 0.00 40.25 2.73
2643 2783 6.090483 TCGCTGGTTATCAAAATCCAAAAA 57.910 33.333 0.00 0.00 0.00 1.94
2644 2784 5.713792 TCGCTGGTTATCAAAATCCAAAA 57.286 34.783 0.00 0.00 0.00 2.44
2645 2785 5.465935 GTTCGCTGGTTATCAAAATCCAAA 58.534 37.500 0.00 0.00 0.00 3.28
2646 2786 4.378978 CGTTCGCTGGTTATCAAAATCCAA 60.379 41.667 0.00 0.00 0.00 3.53
2720 2923 5.376854 AAAGAAATTTGTCATCCTCACGG 57.623 39.130 0.00 0.00 0.00 4.94
2782 2985 2.502142 AGCAAGCACATCAATCCTGA 57.498 45.000 0.00 0.00 35.56 3.86
2809 3012 3.742433 TGTTGTTGCGGGAATGAAAAT 57.258 38.095 0.00 0.00 0.00 1.82
2812 3015 4.855715 TTTATGTTGTTGCGGGAATGAA 57.144 36.364 0.00 0.00 0.00 2.57
2819 3022 8.467402 TTTAATGGTAATTTATGTTGTTGCGG 57.533 30.769 0.00 0.00 0.00 5.69
2848 3051 9.801192 TTCACTAGGAAAACATGGCACATCAGA 62.801 40.741 0.00 0.00 36.10 3.27
2849 3052 7.739954 TTCACTAGGAAAACATGGCACATCAG 61.740 42.308 0.00 0.00 36.10 2.90
2854 3059 3.364964 CGTTCACTAGGAAAACATGGCAC 60.365 47.826 0.00 0.00 37.23 5.01
2862 3067 3.128349 GTGCTGACGTTCACTAGGAAAA 58.872 45.455 8.63 0.00 37.23 2.29
2868 3073 5.778161 CATTATTGTGCTGACGTTCACTA 57.222 39.130 14.55 9.47 34.49 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.