Multiple sequence alignment - TraesCS5B01G317300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G317300 chr5B 100.000 4185 0 0 1 4185 501236516 501240700 0.000000e+00 7729.0
1 TraesCS5B01G317300 chr5D 92.969 1465 64 16 1841 3278 415262351 415263803 0.000000e+00 2098.0
2 TraesCS5B01G317300 chr5D 95.368 950 39 3 891 1838 415261332 415262278 0.000000e+00 1506.0
3 TraesCS5B01G317300 chr5D 95.761 519 21 1 3319 3837 415263949 415264466 0.000000e+00 835.0
4 TraesCS5B01G317300 chr5D 90.323 496 45 3 155 648 495121016 495120522 0.000000e+00 647.0
5 TraesCS5B01G317300 chr5D 94.037 218 12 1 3968 4185 415264673 415264889 3.120000e-86 329.0
6 TraesCS5B01G317300 chr5D 92.903 155 6 3 3822 3973 415264486 415264638 1.960000e-53 220.0
7 TraesCS5B01G317300 chr5A 96.087 920 32 4 925 1841 527844504 527845422 0.000000e+00 1496.0
8 TraesCS5B01G317300 chr5A 89.949 1184 76 20 1845 3005 527845504 527846667 0.000000e+00 1487.0
9 TraesCS5B01G317300 chr5A 94.981 797 31 4 3028 3820 527846718 527847509 0.000000e+00 1242.0
10 TraesCS5B01G317300 chr5A 86.506 415 31 16 3789 4185 527847506 527847913 2.310000e-117 433.0
11 TraesCS5B01G317300 chr5A 92.683 41 2 1 1472 1511 527846678 527846718 1.630000e-04 58.4
12 TraesCS5B01G317300 chr3D 85.832 847 77 25 974 1801 519393225 519392403 0.000000e+00 859.0
13 TraesCS5B01G317300 chr3D 90.741 486 42 3 155 637 156610962 156610477 0.000000e+00 645.0
14 TraesCS5B01G317300 chr3D 76.224 143 26 8 12 150 350781726 350781864 7.510000e-08 69.4
15 TraesCS5B01G317300 chr3B 89.420 690 45 14 974 1650 684112215 684111541 0.000000e+00 845.0
16 TraesCS5B01G317300 chr3B 85.294 850 77 29 974 1801 683790286 683789463 0.000000e+00 833.0
17 TraesCS5B01G317300 chr3B 90.763 498 41 4 155 648 585674680 585675176 0.000000e+00 660.0
18 TraesCS5B01G317300 chr3B 90.524 496 45 2 155 648 585719501 585719996 0.000000e+00 654.0
19 TraesCS5B01G317300 chr3B 89.780 499 48 3 155 650 698212504 698213002 1.640000e-178 636.0
20 TraesCS5B01G317300 chr3B 89.147 129 12 2 19 146 751954540 751954413 4.330000e-35 159.0
21 TraesCS5B01G317300 chr3A 87.336 687 54 14 974 1650 654404978 654404315 0.000000e+00 756.0
22 TraesCS5B01G317300 chr3A 90.299 134 12 1 19 151 698763570 698763437 1.550000e-39 174.0
23 TraesCS5B01G317300 chr3A 85.926 135 17 2 18 150 638893934 638894068 4.360000e-30 143.0
24 TraesCS5B01G317300 chr3A 92.857 42 3 0 3379 3420 654396458 654396417 1.260000e-05 62.1
25 TraesCS5B01G317300 chr4D 91.129 496 42 2 155 648 469762719 469762224 0.000000e+00 671.0
26 TraesCS5B01G317300 chr1B 90.637 502 42 5 155 652 108476407 108476907 0.000000e+00 662.0
27 TraesCS5B01G317300 chr1B 90.600 500 41 3 155 648 631815031 631815530 0.000000e+00 658.0
28 TraesCS5B01G317300 chr2D 90.121 496 41 7 155 648 433478544 433478055 4.560000e-179 638.0
29 TraesCS5B01G317300 chr2A 87.943 141 13 4 19 157 738337001 738336863 3.350000e-36 163.0
30 TraesCS5B01G317300 chr4B 87.591 137 13 2 19 152 584121737 584121602 5.600000e-34 156.0
31 TraesCS5B01G317300 chr4B 87.970 133 15 1 19 151 639958947 639959078 5.600000e-34 156.0
32 TraesCS5B01G317300 chr6B 86.466 133 13 4 19 151 40138130 40138003 1.570000e-29 141.0
33 TraesCS5B01G317300 chr4A 94.118 85 5 0 66 150 716934325 716934241 3.400000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G317300 chr5B 501236516 501240700 4184 False 7729.00 7729 100.0000 1 4185 1 chr5B.!!$F1 4184
1 TraesCS5B01G317300 chr5D 415261332 415264889 3557 False 997.60 2098 94.2076 891 4185 5 chr5D.!!$F1 3294
2 TraesCS5B01G317300 chr5A 527844504 527847913 3409 False 943.28 1496 92.0412 925 4185 5 chr5A.!!$F1 3260
3 TraesCS5B01G317300 chr3D 519392403 519393225 822 True 859.00 859 85.8320 974 1801 1 chr3D.!!$R2 827
4 TraesCS5B01G317300 chr3B 684111541 684112215 674 True 845.00 845 89.4200 974 1650 1 chr3B.!!$R2 676
5 TraesCS5B01G317300 chr3B 683789463 683790286 823 True 833.00 833 85.2940 974 1801 1 chr3B.!!$R1 827
6 TraesCS5B01G317300 chr3A 654404315 654404978 663 True 756.00 756 87.3360 974 1650 1 chr3A.!!$R2 676
7 TraesCS5B01G317300 chr1B 108476407 108476907 500 False 662.00 662 90.6370 155 652 1 chr1B.!!$F1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 331 0.037232 GTGCTTAGGCGAAGTCCTGT 60.037 55.0 9.14 0.0 42.25 4.00 F
535 538 0.306533 TGTCAAACGCTTCCGCTTTC 59.693 50.0 0.00 0.0 38.22 2.62 F
2397 2536 0.179004 TGTGGGGCCTGTGTTTGTAG 60.179 55.0 0.84 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1444 1483 0.466124 GGGCAAGAGGCGAGACTAAT 59.534 55.0 0.00 0.0 46.16 1.73 R
2486 2641 0.838122 AGATTAGGGCCGGCAGCTAT 60.838 55.0 30.85 15.8 43.05 2.97 R
3920 4279 0.109458 GCGCCTTTCCCCGTTAAAAG 60.109 55.0 0.00 0.0 33.26 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.739401 GGATTCCTCCTTCTTTTGGGA 57.261 47.619 0.00 0.00 38.65 4.37
29 30 4.256983 GGATTCCTCCTTCTTTTGGGAT 57.743 45.455 0.00 0.00 38.65 3.85
30 31 4.614475 GGATTCCTCCTTCTTTTGGGATT 58.386 43.478 0.00 0.00 38.65 3.01
31 32 5.026121 GGATTCCTCCTTCTTTTGGGATTT 58.974 41.667 0.00 0.00 38.65 2.17
32 33 6.194967 GGATTCCTCCTTCTTTTGGGATTTA 58.805 40.000 0.00 0.00 38.65 1.40
33 34 6.841229 GGATTCCTCCTTCTTTTGGGATTTAT 59.159 38.462 0.00 0.00 38.65 1.40
34 35 7.345653 GGATTCCTCCTTCTTTTGGGATTTATT 59.654 37.037 0.00 0.00 38.65 1.40
35 36 7.480760 TTCCTCCTTCTTTTGGGATTTATTG 57.519 36.000 0.00 0.00 0.00 1.90
36 37 6.561294 TCCTCCTTCTTTTGGGATTTATTGT 58.439 36.000 0.00 0.00 0.00 2.71
37 38 6.437162 TCCTCCTTCTTTTGGGATTTATTGTG 59.563 38.462 0.00 0.00 0.00 3.33
38 39 6.036577 TCCTTCTTTTGGGATTTATTGTGC 57.963 37.500 0.00 0.00 0.00 4.57
39 40 5.779771 TCCTTCTTTTGGGATTTATTGTGCT 59.220 36.000 0.00 0.00 0.00 4.40
40 41 6.269769 TCCTTCTTTTGGGATTTATTGTGCTT 59.730 34.615 0.00 0.00 0.00 3.91
41 42 6.936335 CCTTCTTTTGGGATTTATTGTGCTTT 59.064 34.615 0.00 0.00 0.00 3.51
42 43 7.095102 CCTTCTTTTGGGATTTATTGTGCTTTG 60.095 37.037 0.00 0.00 0.00 2.77
43 44 5.700373 TCTTTTGGGATTTATTGTGCTTTGC 59.300 36.000 0.00 0.00 0.00 3.68
44 45 3.608316 TGGGATTTATTGTGCTTTGCC 57.392 42.857 0.00 0.00 0.00 4.52
45 46 2.235898 TGGGATTTATTGTGCTTTGCCC 59.764 45.455 0.00 0.00 0.00 5.36
46 47 2.419990 GGGATTTATTGTGCTTTGCCCC 60.420 50.000 0.00 0.00 0.00 5.80
47 48 2.419990 GGATTTATTGTGCTTTGCCCCC 60.420 50.000 0.00 0.00 0.00 5.40
48 49 1.722034 TTTATTGTGCTTTGCCCCCA 58.278 45.000 0.00 0.00 0.00 4.96
49 50 1.722034 TTATTGTGCTTTGCCCCCAA 58.278 45.000 0.00 0.00 0.00 4.12
50 51 0.972883 TATTGTGCTTTGCCCCCAAC 59.027 50.000 0.00 0.00 0.00 3.77
51 52 1.767654 ATTGTGCTTTGCCCCCAACC 61.768 55.000 0.00 0.00 0.00 3.77
52 53 2.841988 GTGCTTTGCCCCCAACCA 60.842 61.111 0.00 0.00 0.00 3.67
53 54 2.041508 TGCTTTGCCCCCAACCAA 60.042 55.556 0.00 0.00 0.00 3.67
54 55 1.690633 TGCTTTGCCCCCAACCAAA 60.691 52.632 0.00 0.00 0.00 3.28
55 56 1.227823 GCTTTGCCCCCAACCAAAC 60.228 57.895 0.00 0.00 0.00 2.93
56 57 1.449782 CTTTGCCCCCAACCAAACC 59.550 57.895 0.00 0.00 0.00 3.27
57 58 1.003573 TTTGCCCCCAACCAAACCT 59.996 52.632 0.00 0.00 0.00 3.50
58 59 0.264955 TTTGCCCCCAACCAAACCTA 59.735 50.000 0.00 0.00 0.00 3.08
59 60 0.489567 TTGCCCCCAACCAAACCTAT 59.510 50.000 0.00 0.00 0.00 2.57
60 61 0.489567 TGCCCCCAACCAAACCTATT 59.510 50.000 0.00 0.00 0.00 1.73
61 62 1.132689 TGCCCCCAACCAAACCTATTT 60.133 47.619 0.00 0.00 0.00 1.40
62 63 1.982226 GCCCCCAACCAAACCTATTTT 59.018 47.619 0.00 0.00 0.00 1.82
63 64 3.174779 GCCCCCAACCAAACCTATTTTA 58.825 45.455 0.00 0.00 0.00 1.52
64 65 3.778075 GCCCCCAACCAAACCTATTTTAT 59.222 43.478 0.00 0.00 0.00 1.40
65 66 4.226394 GCCCCCAACCAAACCTATTTTATT 59.774 41.667 0.00 0.00 0.00 1.40
66 67 5.280779 GCCCCCAACCAAACCTATTTTATTT 60.281 40.000 0.00 0.00 0.00 1.40
67 68 6.748620 GCCCCCAACCAAACCTATTTTATTTT 60.749 38.462 0.00 0.00 0.00 1.82
68 69 7.235079 CCCCCAACCAAACCTATTTTATTTTT 58.765 34.615 0.00 0.00 0.00 1.94
84 85 2.457366 TTTTTGTTGTTGTTGCCCGT 57.543 40.000 0.00 0.00 0.00 5.28
85 86 1.714794 TTTTGTTGTTGTTGCCCGTG 58.285 45.000 0.00 0.00 0.00 4.94
86 87 0.888619 TTTGTTGTTGTTGCCCGTGA 59.111 45.000 0.00 0.00 0.00 4.35
87 88 0.888619 TTGTTGTTGTTGCCCGTGAA 59.111 45.000 0.00 0.00 0.00 3.18
88 89 0.171455 TGTTGTTGTTGCCCGTGAAC 59.829 50.000 0.00 0.00 0.00 3.18
89 90 0.171455 GTTGTTGTTGCCCGTGAACA 59.829 50.000 0.00 0.00 0.00 3.18
90 91 1.107114 TTGTTGTTGCCCGTGAACAT 58.893 45.000 0.00 0.00 33.41 2.71
91 92 1.107114 TGTTGTTGCCCGTGAACATT 58.893 45.000 0.00 0.00 33.41 2.71
92 93 1.202348 TGTTGTTGCCCGTGAACATTG 60.202 47.619 0.00 0.00 33.41 2.82
93 94 1.066303 GTTGTTGCCCGTGAACATTGA 59.934 47.619 0.00 0.00 33.41 2.57
94 95 0.950836 TGTTGCCCGTGAACATTGAG 59.049 50.000 0.00 0.00 0.00 3.02
95 96 0.387239 GTTGCCCGTGAACATTGAGC 60.387 55.000 0.00 0.00 0.00 4.26
96 97 0.537143 TTGCCCGTGAACATTGAGCT 60.537 50.000 0.00 0.00 0.00 4.09
97 98 0.537143 TGCCCGTGAACATTGAGCTT 60.537 50.000 0.00 0.00 0.00 3.74
98 99 0.109597 GCCCGTGAACATTGAGCTTG 60.110 55.000 0.00 0.00 0.00 4.01
99 100 1.522668 CCCGTGAACATTGAGCTTGA 58.477 50.000 0.00 0.00 0.00 3.02
100 101 1.466167 CCCGTGAACATTGAGCTTGAG 59.534 52.381 0.00 0.00 0.00 3.02
101 102 1.466167 CCGTGAACATTGAGCTTGAGG 59.534 52.381 0.00 0.00 0.00 3.86
102 103 2.416747 CGTGAACATTGAGCTTGAGGA 58.583 47.619 0.00 0.00 0.00 3.71
103 104 3.005554 CGTGAACATTGAGCTTGAGGAT 58.994 45.455 0.00 0.00 0.00 3.24
104 105 3.438087 CGTGAACATTGAGCTTGAGGATT 59.562 43.478 0.00 0.00 0.00 3.01
105 106 4.670992 CGTGAACATTGAGCTTGAGGATTG 60.671 45.833 0.00 0.00 0.00 2.67
106 107 3.760151 TGAACATTGAGCTTGAGGATTGG 59.240 43.478 0.00 0.00 0.00 3.16
107 108 3.446442 ACATTGAGCTTGAGGATTGGT 57.554 42.857 0.00 0.00 0.00 3.67
108 109 3.087031 ACATTGAGCTTGAGGATTGGTG 58.913 45.455 0.00 0.00 0.00 4.17
109 110 2.205022 TTGAGCTTGAGGATTGGTGG 57.795 50.000 0.00 0.00 0.00 4.61
110 111 1.067295 TGAGCTTGAGGATTGGTGGT 58.933 50.000 0.00 0.00 0.00 4.16
111 112 2.265367 TGAGCTTGAGGATTGGTGGTA 58.735 47.619 0.00 0.00 0.00 3.25
112 113 2.846206 TGAGCTTGAGGATTGGTGGTAT 59.154 45.455 0.00 0.00 0.00 2.73
113 114 3.209410 GAGCTTGAGGATTGGTGGTATG 58.791 50.000 0.00 0.00 0.00 2.39
114 115 1.678101 GCTTGAGGATTGGTGGTATGC 59.322 52.381 0.00 0.00 0.00 3.14
115 116 2.684927 GCTTGAGGATTGGTGGTATGCT 60.685 50.000 0.00 0.00 0.00 3.79
116 117 3.624777 CTTGAGGATTGGTGGTATGCTT 58.375 45.455 0.00 0.00 0.00 3.91
117 118 3.737559 TGAGGATTGGTGGTATGCTTT 57.262 42.857 0.00 0.00 0.00 3.51
118 119 4.853468 TGAGGATTGGTGGTATGCTTTA 57.147 40.909 0.00 0.00 0.00 1.85
119 120 5.387113 TGAGGATTGGTGGTATGCTTTAT 57.613 39.130 0.00 0.00 0.00 1.40
120 121 6.508030 TGAGGATTGGTGGTATGCTTTATA 57.492 37.500 0.00 0.00 0.00 0.98
121 122 6.905736 TGAGGATTGGTGGTATGCTTTATAA 58.094 36.000 0.00 0.00 0.00 0.98
122 123 7.526041 TGAGGATTGGTGGTATGCTTTATAAT 58.474 34.615 0.00 0.00 0.00 1.28
123 124 8.664992 TGAGGATTGGTGGTATGCTTTATAATA 58.335 33.333 0.00 0.00 0.00 0.98
124 125 9.686683 GAGGATTGGTGGTATGCTTTATAATAT 57.313 33.333 0.00 0.00 0.00 1.28
139 140 9.608617 GCTTTATAATATAAAGCGGGAGAAAAC 57.391 33.333 30.20 10.98 46.31 2.43
141 142 8.625786 TTATAATATAAAGCGGGAGAAAACCC 57.374 34.615 0.00 0.00 45.92 4.11
151 152 4.476628 GGGAGAAAACCCTATTACGTGA 57.523 45.455 0.00 0.00 45.90 4.35
152 153 5.032327 GGGAGAAAACCCTATTACGTGAT 57.968 43.478 0.00 0.00 45.90 3.06
153 154 4.814771 GGGAGAAAACCCTATTACGTGATG 59.185 45.833 2.58 0.00 45.90 3.07
163 164 6.553852 ACCCTATTACGTGATGAAGTAGGATT 59.446 38.462 2.58 0.00 31.12 3.01
169 170 3.384789 CGTGATGAAGTAGGATTCCTCCA 59.615 47.826 8.94 4.16 44.79 3.86
176 177 2.846827 AGTAGGATTCCTCCAACTTGGG 59.153 50.000 8.94 0.00 44.79 4.12
192 193 2.520968 GGGTGCCCCAAGACTGTT 59.479 61.111 5.45 0.00 44.65 3.16
193 194 1.603739 GGGTGCCCCAAGACTGTTC 60.604 63.158 5.45 0.00 44.65 3.18
194 195 1.603739 GGTGCCCCAAGACTGTTCC 60.604 63.158 0.00 0.00 0.00 3.62
196 197 2.035783 GCCCCAAGACTGTTCCCC 59.964 66.667 0.00 0.00 0.00 4.81
197 198 2.539081 GCCCCAAGACTGTTCCCCT 61.539 63.158 0.00 0.00 0.00 4.79
230 233 1.470197 TATATACGTGGGGAGGGGGA 58.530 55.000 0.00 0.00 0.00 4.81
239 242 1.240428 GGGAGGGGGAGCCTAGAAT 59.760 63.158 0.00 0.00 0.00 2.40
254 257 8.585881 GGAGCCTAGAATACACATCAACTATTA 58.414 37.037 0.00 0.00 0.00 0.98
292 295 1.613255 CCCATCCACAGTTTACGCCTT 60.613 52.381 0.00 0.00 0.00 4.35
312 315 3.620929 TCGGTCATATTCTCGTAGTGC 57.379 47.619 0.00 0.00 0.00 4.40
319 322 2.493713 ATTCTCGTAGTGCTTAGGCG 57.506 50.000 0.00 0.00 42.25 5.52
328 331 0.037232 GTGCTTAGGCGAAGTCCTGT 60.037 55.000 9.14 0.00 42.25 4.00
342 345 0.904649 TCCTGTGCGGATCACTTCAT 59.095 50.000 0.00 0.00 45.81 2.57
350 353 2.742856 GCGGATCACTTCATCATCACCA 60.743 50.000 0.00 0.00 0.00 4.17
353 356 3.744942 GGATCACTTCATCATCACCATCG 59.255 47.826 0.00 0.00 0.00 3.84
390 393 3.695060 TGACGGAACTCATCTACTTCCTC 59.305 47.826 0.00 0.00 32.63 3.71
394 397 3.242804 GGAACTCATCTACTTCCTCGACG 60.243 52.174 0.00 0.00 32.16 5.12
414 417 2.709213 GCTCTGCTGGATCAAGAGTTT 58.291 47.619 0.00 0.00 0.00 2.66
431 434 1.067776 GTTTGAGGGACGTCATCGAGT 60.068 52.381 18.91 0.00 40.62 4.18
437 440 0.982673 GGACGTCATCGAGTTGAACG 59.017 55.000 18.91 3.52 40.62 3.95
467 470 1.510623 CGGAGGTGTCGTACGTTCG 60.511 63.158 16.05 8.41 39.50 3.95
483 486 0.527600 TTCGGTGCTTGATCGATCGG 60.528 55.000 20.03 15.65 36.96 4.18
528 531 0.375803 ACCGTGTTGTCAAACGCTTC 59.624 50.000 12.10 0.00 43.30 3.86
530 533 0.653323 CGTGTTGTCAAACGCTTCCG 60.653 55.000 7.15 0.00 43.30 4.30
535 538 0.306533 TGTCAAACGCTTCCGCTTTC 59.693 50.000 0.00 0.00 38.22 2.62
606 609 3.004839 TCTCCTAGATAGATGTTGCGTGC 59.995 47.826 0.00 0.00 0.00 5.34
607 610 2.054363 CCTAGATAGATGTTGCGTGCG 58.946 52.381 0.00 0.00 0.00 5.34
641 645 6.840488 TTTTTAAATTGCATGCTACGTACG 57.160 33.333 20.33 15.01 0.00 3.67
648 652 0.368907 CATGCTACGTACGCCAACAC 59.631 55.000 16.72 0.00 0.00 3.32
652 656 1.135575 GCTACGTACGCCAACACTAGT 60.136 52.381 16.72 0.00 0.00 2.57
653 657 2.778659 CTACGTACGCCAACACTAGTC 58.221 52.381 16.72 0.00 0.00 2.59
654 658 1.242076 ACGTACGCCAACACTAGTCT 58.758 50.000 16.72 0.00 0.00 3.24
655 659 1.068748 ACGTACGCCAACACTAGTCTG 60.069 52.381 16.72 0.00 0.00 3.51
656 660 1.068748 CGTACGCCAACACTAGTCTGT 60.069 52.381 0.52 0.00 0.00 3.41
657 661 2.606308 CGTACGCCAACACTAGTCTGTT 60.606 50.000 0.52 0.00 34.56 3.16
658 662 3.365264 CGTACGCCAACACTAGTCTGTTA 60.365 47.826 0.52 0.00 32.90 2.41
659 663 3.022607 ACGCCAACACTAGTCTGTTAC 57.977 47.619 0.00 0.00 32.90 2.50
660 664 2.626743 ACGCCAACACTAGTCTGTTACT 59.373 45.455 0.00 0.00 42.62 2.24
661 665 3.822735 ACGCCAACACTAGTCTGTTACTA 59.177 43.478 0.00 0.00 39.80 1.82
676 680 9.490379 AGTCTGTTACTAGTGGAAAAATGTAAG 57.510 33.333 5.39 0.00 36.36 2.34
677 681 9.485206 GTCTGTTACTAGTGGAAAAATGTAAGA 57.515 33.333 5.39 0.00 0.00 2.10
715 719 9.708092 AAATTTACCGGACTATTATCTCTAAGC 57.292 33.333 9.46 0.00 0.00 3.09
716 720 7.828508 TTTACCGGACTATTATCTCTAAGCA 57.171 36.000 9.46 0.00 0.00 3.91
717 721 8.418597 TTTACCGGACTATTATCTCTAAGCAT 57.581 34.615 9.46 0.00 0.00 3.79
718 722 9.524496 TTTACCGGACTATTATCTCTAAGCATA 57.476 33.333 9.46 0.00 0.00 3.14
719 723 7.633193 ACCGGACTATTATCTCTAAGCATAG 57.367 40.000 9.46 0.00 0.00 2.23
720 724 7.403671 ACCGGACTATTATCTCTAAGCATAGA 58.596 38.462 9.46 0.00 36.70 1.98
732 736 7.658179 CTCTAAGCATAGAGTTGTGTGAAAA 57.342 36.000 16.21 0.00 46.77 2.29
733 737 8.261492 CTCTAAGCATAGAGTTGTGTGAAAAT 57.739 34.615 16.21 0.00 46.77 1.82
734 738 8.032952 TCTAAGCATAGAGTTGTGTGAAAATG 57.967 34.615 0.00 0.00 33.17 2.32
735 739 6.639632 AAGCATAGAGTTGTGTGAAAATGT 57.360 33.333 0.00 0.00 0.00 2.71
736 740 6.639632 AGCATAGAGTTGTGTGAAAATGTT 57.360 33.333 0.00 0.00 0.00 2.71
737 741 6.672147 AGCATAGAGTTGTGTGAAAATGTTC 58.328 36.000 0.00 0.00 0.00 3.18
738 742 6.262944 AGCATAGAGTTGTGTGAAAATGTTCA 59.737 34.615 0.00 0.00 41.57 3.18
749 753 5.447478 TGAAAATGTTCACTTTTTGTGCG 57.553 34.783 7.96 0.00 45.81 5.34
750 754 3.923827 AAATGTTCACTTTTTGTGCGC 57.076 38.095 0.00 0.00 45.81 6.09
751 755 2.575694 ATGTTCACTTTTTGTGCGCA 57.424 40.000 5.66 5.66 45.81 6.09
752 756 2.354109 TGTTCACTTTTTGTGCGCAA 57.646 40.000 14.00 9.01 45.81 4.85
753 757 2.886081 TGTTCACTTTTTGTGCGCAAT 58.114 38.095 14.00 0.00 45.81 3.56
754 758 2.857152 TGTTCACTTTTTGTGCGCAATC 59.143 40.909 14.00 0.00 45.81 2.67
755 759 3.115554 GTTCACTTTTTGTGCGCAATCT 58.884 40.909 14.00 0.00 45.81 2.40
756 760 3.435105 TCACTTTTTGTGCGCAATCTT 57.565 38.095 14.00 0.00 45.81 2.40
757 761 3.779759 TCACTTTTTGTGCGCAATCTTT 58.220 36.364 14.00 0.00 45.81 2.52
758 762 4.180057 TCACTTTTTGTGCGCAATCTTTT 58.820 34.783 14.00 0.00 45.81 2.27
759 763 4.629200 TCACTTTTTGTGCGCAATCTTTTT 59.371 33.333 14.00 0.00 45.81 1.94
785 789 7.715265 TTTTTGAGTAACTTTTGTGTGCAAA 57.285 28.000 0.00 0.00 42.25 3.68
786 790 7.897575 TTTTGAGTAACTTTTGTGTGCAAAT 57.102 28.000 0.00 0.00 43.26 2.32
787 791 6.884096 TTGAGTAACTTTTGTGTGCAAATG 57.116 33.333 0.00 0.00 43.26 2.32
789 793 7.089770 TGAGTAACTTTTGTGTGCAAATGTA 57.910 32.000 10.51 0.97 45.87 2.29
790 794 7.192913 TGAGTAACTTTTGTGTGCAAATGTAG 58.807 34.615 10.51 1.91 45.87 2.74
791 795 5.977129 AGTAACTTTTGTGTGCAAATGTAGC 59.023 36.000 10.51 7.72 45.87 3.58
792 796 4.383850 ACTTTTGTGTGCAAATGTAGCA 57.616 36.364 9.00 0.00 45.24 3.49
793 797 4.362279 ACTTTTGTGTGCAAATGTAGCAG 58.638 39.130 9.00 0.00 45.24 4.24
794 798 4.142182 ACTTTTGTGTGCAAATGTAGCAGT 60.142 37.500 9.00 0.34 45.24 4.40
795 799 3.352554 TTGTGTGCAAATGTAGCAGTG 57.647 42.857 0.00 0.00 43.63 3.66
796 800 1.001487 TGTGTGCAAATGTAGCAGTGC 60.001 47.619 7.13 7.13 43.63 4.40
797 801 1.267806 GTGTGCAAATGTAGCAGTGCT 59.732 47.619 23.44 23.44 43.63 4.40
798 802 1.955778 TGTGCAAATGTAGCAGTGCTT 59.044 42.857 25.23 1.57 43.63 3.91
799 803 2.361757 TGTGCAAATGTAGCAGTGCTTT 59.638 40.909 25.23 9.02 43.63 3.51
800 804 2.982470 GTGCAAATGTAGCAGTGCTTTC 59.018 45.455 25.23 16.94 43.63 2.62
801 805 2.622470 TGCAAATGTAGCAGTGCTTTCA 59.378 40.909 25.23 21.83 40.44 2.69
802 806 3.067883 TGCAAATGTAGCAGTGCTTTCAA 59.932 39.130 25.23 1.12 40.44 2.69
803 807 4.240096 GCAAATGTAGCAGTGCTTTCAAT 58.760 39.130 25.23 13.17 40.44 2.57
804 808 4.090930 GCAAATGTAGCAGTGCTTTCAATG 59.909 41.667 25.23 22.30 40.44 2.82
805 809 4.445452 AATGTAGCAGTGCTTTCAATGG 57.555 40.909 25.23 0.00 40.44 3.16
807 811 2.813754 TGTAGCAGTGCTTTCAATGGTC 59.186 45.455 25.23 3.90 44.36 4.02
808 812 0.877071 AGCAGTGCTTTCAATGGTCG 59.123 50.000 13.14 0.00 44.36 4.79
809 813 0.874390 GCAGTGCTTTCAATGGTCGA 59.126 50.000 8.18 0.00 38.60 4.20
810 814 1.266718 GCAGTGCTTTCAATGGTCGAA 59.733 47.619 8.18 0.00 38.60 3.71
811 815 2.287547 GCAGTGCTTTCAATGGTCGAAA 60.288 45.455 8.18 0.00 38.60 3.46
812 816 3.612479 GCAGTGCTTTCAATGGTCGAAAT 60.612 43.478 8.18 0.00 38.60 2.17
813 817 3.916172 CAGTGCTTTCAATGGTCGAAATG 59.084 43.478 0.00 0.00 34.89 2.32
814 818 2.663119 GTGCTTTCAATGGTCGAAATGC 59.337 45.455 0.00 0.00 32.21 3.56
815 819 2.557924 TGCTTTCAATGGTCGAAATGCT 59.442 40.909 0.00 0.00 32.21 3.79
816 820 3.005684 TGCTTTCAATGGTCGAAATGCTT 59.994 39.130 0.00 0.00 32.21 3.91
817 821 3.365820 GCTTTCAATGGTCGAAATGCTTG 59.634 43.478 0.00 0.00 32.21 4.01
818 822 4.797471 CTTTCAATGGTCGAAATGCTTGA 58.203 39.130 0.00 0.00 32.21 3.02
819 823 4.844998 TTCAATGGTCGAAATGCTTGAA 57.155 36.364 0.00 0.00 32.04 2.69
820 824 4.424061 TCAATGGTCGAAATGCTTGAAG 57.576 40.909 0.00 0.00 0.00 3.02
821 825 4.071423 TCAATGGTCGAAATGCTTGAAGA 58.929 39.130 0.00 0.00 0.00 2.87
822 826 4.518590 TCAATGGTCGAAATGCTTGAAGAA 59.481 37.500 0.00 0.00 0.00 2.52
823 827 5.009510 TCAATGGTCGAAATGCTTGAAGAAA 59.990 36.000 0.00 0.00 0.00 2.52
824 828 4.909696 TGGTCGAAATGCTTGAAGAAAA 57.090 36.364 0.00 0.00 0.00 2.29
825 829 5.255710 TGGTCGAAATGCTTGAAGAAAAA 57.744 34.783 0.00 0.00 0.00 1.94
842 846 1.751437 AAAAGACGGCCCAATAGAGC 58.249 50.000 0.00 0.00 0.00 4.09
843 847 0.462047 AAAGACGGCCCAATAGAGCG 60.462 55.000 0.00 0.00 0.00 5.03
844 848 1.327690 AAGACGGCCCAATAGAGCGA 61.328 55.000 0.00 0.00 0.00 4.93
845 849 1.115930 AGACGGCCCAATAGAGCGAT 61.116 55.000 0.00 0.00 0.00 4.58
846 850 0.946221 GACGGCCCAATAGAGCGATG 60.946 60.000 0.00 0.00 0.00 3.84
847 851 1.669115 CGGCCCAATAGAGCGATGG 60.669 63.158 0.00 0.00 0.00 3.51
848 852 1.451936 GGCCCAATAGAGCGATGGT 59.548 57.895 0.00 0.00 32.13 3.55
849 853 0.886490 GGCCCAATAGAGCGATGGTG 60.886 60.000 0.00 0.00 32.13 4.17
850 854 1.510480 GCCCAATAGAGCGATGGTGC 61.510 60.000 0.00 0.00 32.13 5.01
851 855 1.224069 CCCAATAGAGCGATGGTGCG 61.224 60.000 0.00 0.00 40.67 5.34
859 863 2.433145 CGATGGTGCGCAGTGAGT 60.433 61.111 12.22 0.00 0.00 3.41
860 864 2.733671 CGATGGTGCGCAGTGAGTG 61.734 63.158 12.22 0.00 0.00 3.51
861 865 2.359107 ATGGTGCGCAGTGAGTGG 60.359 61.111 12.22 0.00 0.00 4.00
862 866 3.907260 ATGGTGCGCAGTGAGTGGG 62.907 63.158 12.22 0.00 42.10 4.61
867 871 2.125512 CGCAGTGAGTGGGCTACC 60.126 66.667 0.00 0.00 31.39 3.18
868 872 2.942796 CGCAGTGAGTGGGCTACCA 61.943 63.158 0.00 0.00 46.94 3.25
878 882 1.909700 TGGGCTACCAGCAAAAGAAG 58.090 50.000 0.00 0.00 44.75 2.85
879 883 1.423541 TGGGCTACCAGCAAAAGAAGA 59.576 47.619 0.00 0.00 44.75 2.87
880 884 2.158534 TGGGCTACCAGCAAAAGAAGAA 60.159 45.455 0.00 0.00 44.75 2.52
881 885 3.092301 GGGCTACCAGCAAAAGAAGAAT 58.908 45.455 0.00 0.00 44.75 2.40
882 886 3.511540 GGGCTACCAGCAAAAGAAGAATT 59.488 43.478 0.00 0.00 44.75 2.17
883 887 4.488879 GGCTACCAGCAAAAGAAGAATTG 58.511 43.478 0.00 0.00 44.75 2.32
990 994 1.990614 GCCCGTCTTCTTCCCCTCT 60.991 63.158 0.00 0.00 0.00 3.69
1270 1297 4.540735 CCCGTACCCCCGCATCAC 62.541 72.222 0.00 0.00 0.00 3.06
1401 1440 4.135153 GCAGAAGCTCGCCGAGGA 62.135 66.667 16.95 0.00 37.91 3.71
1444 1483 1.738350 GAGGTCGTCAAGTGAGATCGA 59.262 52.381 0.00 0.00 0.00 3.59
1454 1494 3.889196 AGTGAGATCGATTAGTCTCGC 57.111 47.619 16.08 16.08 46.93 5.03
1570 1611 1.348064 AGAACCCCGATGAGTTCACA 58.652 50.000 5.76 0.00 43.89 3.58
1838 1895 4.151798 GCTGTTCGTGTAGAAAAGAATGC 58.848 43.478 2.50 0.00 45.12 3.56
1840 1897 5.342806 TGTTCGTGTAGAAAAGAATGCTG 57.657 39.130 0.00 0.00 41.10 4.41
1841 1898 5.053811 TGTTCGTGTAGAAAAGAATGCTGA 58.946 37.500 0.00 0.00 41.10 4.26
1842 1899 5.177511 TGTTCGTGTAGAAAAGAATGCTGAG 59.822 40.000 0.00 0.00 41.10 3.35
1843 1900 3.679980 TCGTGTAGAAAAGAATGCTGAGC 59.320 43.478 0.00 0.00 0.00 4.26
1852 1981 7.889469 AGAAAAGAATGCTGAGCTTTTTATCA 58.111 30.769 5.83 0.00 40.70 2.15
1888 2017 4.222124 CCATATAGTGGCATCCTAACCC 57.778 50.000 0.00 0.00 42.12 4.11
1913 2042 6.091169 CCAAATCAAGCAAATACATGTTGTCC 59.909 38.462 2.30 0.00 0.00 4.02
1919 2048 6.594788 AGCAAATACATGTTGTCCTTCATT 57.405 33.333 2.30 0.00 0.00 2.57
1946 2082 9.603921 AATTTGGCCTTCATTTATGTGATTTAG 57.396 29.630 3.32 0.00 0.00 1.85
2081 2220 3.462205 AGTTTTCCCTGTTGTTACTCCCT 59.538 43.478 0.00 0.00 0.00 4.20
2090 2229 5.454187 CCTGTTGTTACTCCCTTTGACTGTA 60.454 44.000 0.00 0.00 0.00 2.74
2127 2266 0.314935 GGTGAAATGTGGTGCCAGTG 59.685 55.000 0.00 0.00 0.00 3.66
2141 2280 1.676006 GCCAGTGTTTGTTGTACTGCT 59.324 47.619 0.00 0.00 40.26 4.24
2150 2289 6.147821 GTGTTTGTTGTACTGCTCATGTAGAT 59.852 38.462 0.00 0.00 0.00 1.98
2209 2348 6.491403 GGATAGATGGCAATTTTGTATCCAGT 59.509 38.462 14.05 0.00 34.22 4.00
2242 2381 9.140286 GTATCTGTATAGCATTTATTGAAGCGA 57.860 33.333 0.00 0.00 0.00 4.93
2245 2384 7.118245 TCTGTATAGCATTTATTGAAGCGATGG 59.882 37.037 0.00 0.00 0.00 3.51
2247 2386 2.035066 AGCATTTATTGAAGCGATGGCC 59.965 45.455 0.00 0.00 41.24 5.36
2273 2412 2.831685 CCCACCTTTTTGTTTAGGGC 57.168 50.000 0.00 0.00 35.79 5.19
2280 2419 5.048294 CACCTTTTTGTTTAGGGCTCGTTAT 60.048 40.000 0.00 0.00 35.79 1.89
2295 2434 4.210120 GCTCGTTATGATCAATCAGTGTCC 59.790 45.833 0.00 0.00 40.64 4.02
2303 2442 6.312141 TGATCAATCAGTGTCCCAAATAGA 57.688 37.500 0.00 0.00 32.11 1.98
2338 2477 3.135994 TCGAAGCTTTTCCTGGTGTTAC 58.864 45.455 0.00 0.00 0.00 2.50
2347 2486 3.433306 TCCTGGTGTTACTCCCAATTG 57.567 47.619 0.00 0.00 0.00 2.32
2351 2490 3.750371 TGGTGTTACTCCCAATTGACTG 58.250 45.455 7.12 0.00 0.00 3.51
2352 2491 3.137544 TGGTGTTACTCCCAATTGACTGT 59.862 43.478 7.12 4.84 0.00 3.55
2356 2495 0.324943 ACTCCCAATTGACTGTCGGG 59.675 55.000 7.12 11.09 38.34 5.14
2360 2499 0.251916 CCAATTGACTGTCGGGCCTA 59.748 55.000 7.12 0.00 0.00 3.93
2364 2503 4.196193 CAATTGACTGTCGGGCCTAATTA 58.804 43.478 0.84 0.00 0.00 1.40
2379 2518 7.651704 CGGGCCTAATTAAATTTAGGTGAAATG 59.348 37.037 13.85 0.10 46.71 2.32
2396 2535 0.480690 ATGTGGGGCCTGTGTTTGTA 59.519 50.000 0.84 0.00 0.00 2.41
2397 2536 0.179004 TGTGGGGCCTGTGTTTGTAG 60.179 55.000 0.84 0.00 0.00 2.74
2405 2544 2.423577 CCTGTGTTTGTAGGTACTGCC 58.576 52.381 0.00 0.00 41.53 4.85
2459 2599 6.071108 AGCTGTATAAGAATGGATAGATGCGT 60.071 38.462 0.00 0.00 0.00 5.24
2473 2628 7.068103 TGGATAGATGCGTTTTTGTATCCATTT 59.932 33.333 5.03 0.00 40.52 2.32
2505 2660 0.838122 ATAGCTGCCGGCCCTAATCT 60.838 55.000 26.77 13.55 43.05 2.40
2742 2899 5.297776 GGGACAGGAACAATGTGAATCATAG 59.702 44.000 0.00 0.00 35.48 2.23
2763 2920 9.916360 TCATAGTTGACTACATTAGTAAGGAGA 57.084 33.333 0.75 0.00 39.59 3.71
2897 3054 7.558444 TGTGTTTGGTAACTTGGTTAGAATCTT 59.442 33.333 0.00 0.00 35.24 2.40
2989 3147 9.410556 GTAATGCATTGTTTGTAAATCTTGACT 57.589 29.630 22.27 0.00 0.00 3.41
3026 3213 5.915196 GTGCCACTATTTTTGACTTCAAGAC 59.085 40.000 0.00 0.00 37.15 3.01
3199 3387 2.027192 GCACTGACATAAGGACCCAAGA 60.027 50.000 0.00 0.00 0.00 3.02
3278 3466 7.335627 CCTGGGAACAAACAACTGATACTATA 58.664 38.462 0.00 0.00 42.06 1.31
3280 3468 8.958119 TGGGAACAAACAACTGATACTATATC 57.042 34.615 0.00 0.00 37.44 1.63
3281 3469 7.990886 TGGGAACAAACAACTGATACTATATCC 59.009 37.037 0.00 0.00 37.44 2.59
3409 3702 4.556699 GCTAGATTTGCCGTGTTTTTGTCT 60.557 41.667 0.00 0.00 0.00 3.41
3534 3827 4.572389 AGCTCATCATCGTGTATTGGTTTC 59.428 41.667 0.00 0.00 0.00 2.78
3580 3876 2.341257 CTACTGGCAAGTGCTGTGTAG 58.659 52.381 3.21 9.15 41.70 2.74
3659 3955 4.020662 GGATAGGTTGCCTCTTGGAGATAG 60.021 50.000 0.00 0.00 34.61 2.08
3789 4085 2.964174 CATGTGTGCATGCCGGTT 59.036 55.556 16.68 0.00 44.87 4.44
3791 4087 3.285523 ATGTGTGCATGCCGGTTGC 62.286 57.895 16.68 20.54 40.55 4.17
3880 4239 1.266718 CAGTGACAACCATGAAACGGG 59.733 52.381 0.00 0.00 0.00 5.28
3887 4246 2.453983 ACCATGAAACGGGCAATTTG 57.546 45.000 0.00 0.00 0.00 2.32
3889 4248 2.029110 ACCATGAAACGGGCAATTTGAG 60.029 45.455 0.00 0.00 0.00 3.02
3912 4271 8.623903 TGAGCAAAATTTCTGGACATCATATAC 58.376 33.333 0.00 0.00 0.00 1.47
3913 4272 7.945134 AGCAAAATTTCTGGACATCATATACC 58.055 34.615 0.00 0.00 0.00 2.73
3916 4275 6.529084 AATTTCTGGACATCATATACCCCA 57.471 37.500 0.00 0.00 0.00 4.96
3920 4279 6.126863 TCTGGACATCATATACCCCATTTC 57.873 41.667 0.00 0.00 0.00 2.17
3989 4391 9.015367 TCATAGATAGAAAGAAGAGGGATTACG 57.985 37.037 0.00 0.00 0.00 3.18
3997 4399 0.400093 AGAGGGATTACGGGGGAAGG 60.400 60.000 0.00 0.00 0.00 3.46
4050 4452 9.036980 AGCTAAAGACAGGTTCTAAAGATCTAA 57.963 33.333 0.00 0.00 32.51 2.10
4071 4473 7.265673 TCTAATTACAACCTCATGAGCTACAC 58.734 38.462 17.76 0.00 0.00 2.90
4075 4477 3.832490 ACAACCTCATGAGCTACACTGTA 59.168 43.478 17.76 0.00 0.00 2.74
4142 4544 2.993899 AGTAATCCGCAAGAGTTGTTCG 59.006 45.455 0.00 0.00 43.02 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.227527 TCCCAAAAGAAGGAGGAATCCTAC 59.772 45.833 2.48 2.48 39.65 3.18
6 7 4.444611 TCCCAAAAGAAGGAGGAATCCTA 58.555 43.478 0.00 0.00 39.65 2.94
7 8 3.269034 TCCCAAAAGAAGGAGGAATCCT 58.731 45.455 0.00 0.00 43.04 3.24
8 9 3.739401 TCCCAAAAGAAGGAGGAATCC 57.261 47.619 0.00 0.00 0.00 3.01
9 10 7.904558 ATAAATCCCAAAAGAAGGAGGAATC 57.095 36.000 0.00 0.00 35.08 2.52
10 11 7.679881 ACAATAAATCCCAAAAGAAGGAGGAAT 59.320 33.333 0.00 0.00 35.08 3.01
11 12 7.016296 ACAATAAATCCCAAAAGAAGGAGGAA 58.984 34.615 0.00 0.00 35.08 3.36
12 13 6.437162 CACAATAAATCCCAAAAGAAGGAGGA 59.563 38.462 0.00 0.00 35.08 3.71
13 14 6.633856 CACAATAAATCCCAAAAGAAGGAGG 58.366 40.000 0.00 0.00 35.08 4.30
14 15 6.071165 AGCACAATAAATCCCAAAAGAAGGAG 60.071 38.462 0.00 0.00 35.08 3.69
15 16 5.779771 AGCACAATAAATCCCAAAAGAAGGA 59.220 36.000 0.00 0.00 36.36 3.36
16 17 6.041423 AGCACAATAAATCCCAAAAGAAGG 57.959 37.500 0.00 0.00 0.00 3.46
17 18 7.571798 GCAAAGCACAATAAATCCCAAAAGAAG 60.572 37.037 0.00 0.00 0.00 2.85
18 19 6.204495 GCAAAGCACAATAAATCCCAAAAGAA 59.796 34.615 0.00 0.00 0.00 2.52
19 20 5.700373 GCAAAGCACAATAAATCCCAAAAGA 59.300 36.000 0.00 0.00 0.00 2.52
20 21 5.106594 GGCAAAGCACAATAAATCCCAAAAG 60.107 40.000 0.00 0.00 0.00 2.27
21 22 4.759183 GGCAAAGCACAATAAATCCCAAAA 59.241 37.500 0.00 0.00 0.00 2.44
22 23 4.322567 GGCAAAGCACAATAAATCCCAAA 58.677 39.130 0.00 0.00 0.00 3.28
23 24 3.307339 GGGCAAAGCACAATAAATCCCAA 60.307 43.478 0.00 0.00 0.00 4.12
24 25 2.235898 GGGCAAAGCACAATAAATCCCA 59.764 45.455 0.00 0.00 0.00 4.37
25 26 2.419990 GGGGCAAAGCACAATAAATCCC 60.420 50.000 0.00 0.00 30.93 3.85
26 27 2.419990 GGGGGCAAAGCACAATAAATCC 60.420 50.000 0.00 0.00 30.93 3.01
27 28 2.235898 TGGGGGCAAAGCACAATAAATC 59.764 45.455 0.00 0.00 30.93 2.17
28 29 2.264455 TGGGGGCAAAGCACAATAAAT 58.736 42.857 0.00 0.00 30.93 1.40
29 30 1.722034 TGGGGGCAAAGCACAATAAA 58.278 45.000 0.00 0.00 30.93 1.40
30 31 1.346068 GTTGGGGGCAAAGCACAATAA 59.654 47.619 0.00 0.00 30.93 1.40
31 32 0.972883 GTTGGGGGCAAAGCACAATA 59.027 50.000 0.00 0.00 30.93 1.90
32 33 1.754107 GTTGGGGGCAAAGCACAAT 59.246 52.632 0.00 0.00 30.93 2.71
33 34 2.439104 GGTTGGGGGCAAAGCACAA 61.439 57.895 0.00 0.00 30.93 3.33
34 35 2.841988 GGTTGGGGGCAAAGCACA 60.842 61.111 0.00 0.00 30.93 4.57
35 36 1.977293 TTTGGTTGGGGGCAAAGCAC 61.977 55.000 0.00 0.00 34.95 4.40
36 37 1.690633 TTTGGTTGGGGGCAAAGCA 60.691 52.632 0.00 0.00 33.46 3.91
37 38 1.227823 GTTTGGTTGGGGGCAAAGC 60.228 57.895 0.00 0.00 0.00 3.51
38 39 1.053835 AGGTTTGGTTGGGGGCAAAG 61.054 55.000 0.00 0.00 0.00 2.77
39 40 0.264955 TAGGTTTGGTTGGGGGCAAA 59.735 50.000 0.00 0.00 0.00 3.68
40 41 0.489567 ATAGGTTTGGTTGGGGGCAA 59.510 50.000 0.00 0.00 0.00 4.52
41 42 0.489567 AATAGGTTTGGTTGGGGGCA 59.510 50.000 0.00 0.00 0.00 5.36
42 43 1.651737 AAATAGGTTTGGTTGGGGGC 58.348 50.000 0.00 0.00 0.00 5.80
43 44 6.381498 AAATAAAATAGGTTTGGTTGGGGG 57.619 37.500 0.00 0.00 0.00 5.40
65 66 2.069273 CACGGGCAACAACAACAAAAA 58.931 42.857 0.00 0.00 39.74 1.94
66 67 1.272490 TCACGGGCAACAACAACAAAA 59.728 42.857 0.00 0.00 39.74 2.44
67 68 0.888619 TCACGGGCAACAACAACAAA 59.111 45.000 0.00 0.00 39.74 2.83
68 69 0.888619 TTCACGGGCAACAACAACAA 59.111 45.000 0.00 0.00 39.74 2.83
69 70 0.171455 GTTCACGGGCAACAACAACA 59.829 50.000 0.00 0.00 39.74 3.33
70 71 0.171455 TGTTCACGGGCAACAACAAC 59.829 50.000 0.97 0.00 39.74 3.32
71 72 1.107114 ATGTTCACGGGCAACAACAA 58.893 45.000 6.74 0.00 37.30 2.83
72 73 1.107114 AATGTTCACGGGCAACAACA 58.893 45.000 6.74 0.00 37.30 3.33
73 74 1.066303 TCAATGTTCACGGGCAACAAC 59.934 47.619 6.74 0.00 37.30 3.32
74 75 1.336440 CTCAATGTTCACGGGCAACAA 59.664 47.619 6.74 0.00 37.30 2.83
75 76 0.950836 CTCAATGTTCACGGGCAACA 59.049 50.000 5.38 5.38 38.12 3.33
76 77 0.387239 GCTCAATGTTCACGGGCAAC 60.387 55.000 0.00 0.00 0.00 4.17
77 78 0.537143 AGCTCAATGTTCACGGGCAA 60.537 50.000 0.00 0.00 0.00 4.52
78 79 0.537143 AAGCTCAATGTTCACGGGCA 60.537 50.000 0.00 0.00 0.00 5.36
79 80 0.109597 CAAGCTCAATGTTCACGGGC 60.110 55.000 0.00 0.00 0.00 6.13
80 81 1.466167 CTCAAGCTCAATGTTCACGGG 59.534 52.381 0.00 0.00 0.00 5.28
81 82 1.466167 CCTCAAGCTCAATGTTCACGG 59.534 52.381 0.00 0.00 0.00 4.94
82 83 2.416747 TCCTCAAGCTCAATGTTCACG 58.583 47.619 0.00 0.00 0.00 4.35
83 84 4.380233 CCAATCCTCAAGCTCAATGTTCAC 60.380 45.833 0.00 0.00 0.00 3.18
84 85 3.760151 CCAATCCTCAAGCTCAATGTTCA 59.240 43.478 0.00 0.00 0.00 3.18
85 86 3.760684 ACCAATCCTCAAGCTCAATGTTC 59.239 43.478 0.00 0.00 0.00 3.18
86 87 3.508793 CACCAATCCTCAAGCTCAATGTT 59.491 43.478 0.00 0.00 0.00 2.71
87 88 3.087031 CACCAATCCTCAAGCTCAATGT 58.913 45.455 0.00 0.00 0.00 2.71
88 89 2.426024 CCACCAATCCTCAAGCTCAATG 59.574 50.000 0.00 0.00 0.00 2.82
89 90 2.042162 ACCACCAATCCTCAAGCTCAAT 59.958 45.455 0.00 0.00 0.00 2.57
90 91 1.425066 ACCACCAATCCTCAAGCTCAA 59.575 47.619 0.00 0.00 0.00 3.02
91 92 1.067295 ACCACCAATCCTCAAGCTCA 58.933 50.000 0.00 0.00 0.00 4.26
92 93 3.209410 CATACCACCAATCCTCAAGCTC 58.791 50.000 0.00 0.00 0.00 4.09
93 94 2.684927 GCATACCACCAATCCTCAAGCT 60.685 50.000 0.00 0.00 0.00 3.74
94 95 1.678101 GCATACCACCAATCCTCAAGC 59.322 52.381 0.00 0.00 0.00 4.01
95 96 3.287867 AGCATACCACCAATCCTCAAG 57.712 47.619 0.00 0.00 0.00 3.02
96 97 3.737559 AAGCATACCACCAATCCTCAA 57.262 42.857 0.00 0.00 0.00 3.02
97 98 3.737559 AAAGCATACCACCAATCCTCA 57.262 42.857 0.00 0.00 0.00 3.86
98 99 9.686683 ATATTATAAAGCATACCACCAATCCTC 57.313 33.333 0.00 0.00 0.00 3.71
115 116 9.070179 GGGTTTTCTCCCGCTTTATATTATAAA 57.930 33.333 8.26 8.26 37.93 1.40
116 117 8.625786 GGGTTTTCTCCCGCTTTATATTATAA 57.374 34.615 0.00 0.00 37.93 0.98
131 132 5.667466 TCATCACGTAATAGGGTTTTCTCC 58.333 41.667 0.00 0.00 0.00 3.71
132 133 6.817140 ACTTCATCACGTAATAGGGTTTTCTC 59.183 38.462 0.00 0.00 0.00 2.87
133 134 6.708285 ACTTCATCACGTAATAGGGTTTTCT 58.292 36.000 0.00 0.00 0.00 2.52
134 135 6.980051 ACTTCATCACGTAATAGGGTTTTC 57.020 37.500 0.00 0.00 0.00 2.29
135 136 7.046033 CCTACTTCATCACGTAATAGGGTTTT 58.954 38.462 0.00 0.00 0.00 2.43
136 137 6.381994 TCCTACTTCATCACGTAATAGGGTTT 59.618 38.462 0.00 0.00 0.00 3.27
137 138 5.895534 TCCTACTTCATCACGTAATAGGGTT 59.104 40.000 0.00 0.00 0.00 4.11
138 139 5.452255 TCCTACTTCATCACGTAATAGGGT 58.548 41.667 0.00 0.00 0.00 4.34
139 140 6.591750 ATCCTACTTCATCACGTAATAGGG 57.408 41.667 0.00 0.00 0.00 3.53
140 141 7.039644 AGGAATCCTACTTCATCACGTAATAGG 60.040 40.741 0.00 0.00 28.47 2.57
141 142 7.887381 AGGAATCCTACTTCATCACGTAATAG 58.113 38.462 0.00 0.00 28.47 1.73
142 143 7.039923 GGAGGAATCCTACTTCATCACGTAATA 60.040 40.741 3.74 0.00 37.61 0.98
143 144 6.239345 GGAGGAATCCTACTTCATCACGTAAT 60.239 42.308 3.74 0.00 37.61 1.89
144 145 5.068723 GGAGGAATCCTACTTCATCACGTAA 59.931 44.000 3.74 0.00 37.61 3.18
145 146 4.583489 GGAGGAATCCTACTTCATCACGTA 59.417 45.833 3.74 0.00 37.61 3.57
146 147 3.385111 GGAGGAATCCTACTTCATCACGT 59.615 47.826 3.74 0.00 37.61 4.49
147 148 3.384789 TGGAGGAATCCTACTTCATCACG 59.615 47.826 13.53 0.00 37.61 4.35
148 149 5.104735 AGTTGGAGGAATCCTACTTCATCAC 60.105 44.000 13.53 0.46 41.74 3.06
149 150 5.032846 AGTTGGAGGAATCCTACTTCATCA 58.967 41.667 13.53 0.00 41.74 3.07
150 151 5.622346 AGTTGGAGGAATCCTACTTCATC 57.378 43.478 13.53 4.22 41.74 2.92
163 164 2.840753 GGCACCCCAAGTTGGAGGA 61.841 63.158 27.00 0.00 40.96 3.71
184 185 0.547954 GAGGGGAGGGGAACAGTCTT 60.548 60.000 0.00 0.00 0.00 3.01
187 188 2.125225 GGAGGGGAGGGGAACAGT 59.875 66.667 0.00 0.00 0.00 3.55
188 189 2.692741 GGGAGGGGAGGGGAACAG 60.693 72.222 0.00 0.00 0.00 3.16
189 190 3.547737 TGGGAGGGGAGGGGAACA 61.548 66.667 0.00 0.00 0.00 3.18
190 191 3.015753 GTGGGAGGGGAGGGGAAC 61.016 72.222 0.00 0.00 0.00 3.62
191 192 4.364686 GGTGGGAGGGGAGGGGAA 62.365 72.222 0.00 0.00 0.00 3.97
192 193 3.823632 TATAGGTGGGAGGGGAGGGGA 62.824 61.905 0.00 0.00 0.00 4.81
193 194 1.385153 TATAGGTGGGAGGGGAGGGG 61.385 65.000 0.00 0.00 0.00 4.79
194 195 0.800239 ATATAGGTGGGAGGGGAGGG 59.200 60.000 0.00 0.00 0.00 4.30
196 197 4.079327 ACGTATATATAGGTGGGAGGGGAG 60.079 50.000 15.50 0.00 30.94 4.30
197 198 3.860470 ACGTATATATAGGTGGGAGGGGA 59.140 47.826 15.50 0.00 30.94 4.81
225 228 1.802553 TGTGTATTCTAGGCTCCCCC 58.197 55.000 0.00 0.00 0.00 5.40
239 242 7.436970 CACACGGCTAATAATAGTTGATGTGTA 59.563 37.037 0.00 0.00 0.00 2.90
270 273 1.029947 GCGTAAACTGTGGATGGGGG 61.030 60.000 0.00 0.00 0.00 5.40
275 278 1.674817 CCGAAGGCGTAAACTGTGGAT 60.675 52.381 0.00 0.00 46.14 3.41
292 295 3.211865 AGCACTACGAGAATATGACCGA 58.788 45.455 0.00 0.00 0.00 4.69
312 315 1.078759 CGCACAGGACTTCGCCTAAG 61.079 60.000 0.00 0.00 41.33 2.18
328 331 2.554142 GTGATGATGAAGTGATCCGCA 58.446 47.619 0.00 0.00 0.00 5.69
342 345 2.511373 GCGTGGCGATGGTGATGA 60.511 61.111 0.00 0.00 0.00 2.92
390 393 1.144565 CTTGATCCAGCAGAGCGTCG 61.145 60.000 0.00 0.00 31.78 5.12
394 397 2.399916 AACTCTTGATCCAGCAGAGC 57.600 50.000 7.78 0.00 0.00 4.09
414 417 0.526211 CAACTCGATGACGTCCCTCA 59.474 55.000 14.12 0.00 40.69 3.86
431 434 0.927537 CGAGTTCTGCACACGTTCAA 59.072 50.000 0.00 0.00 35.01 2.69
437 440 0.946221 CACCTCCGAGTTCTGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
467 470 0.931005 GTTCCGATCGATCAAGCACC 59.069 55.000 24.40 3.94 0.00 5.01
483 486 8.912787 TGATATAGTCAAACTTCTTCTCGTTC 57.087 34.615 0.00 0.00 32.78 3.95
498 501 5.394224 TGACAACACGGTTGATATAGTCA 57.606 39.130 19.38 10.75 34.25 3.41
504 507 2.032722 GCGTTTGACAACACGGTTGATA 60.033 45.455 19.38 8.08 36.88 2.15
511 514 0.653323 CGGAAGCGTTTGACAACACG 60.653 55.000 14.52 14.52 39.49 4.49
530 533 0.539986 TACCCTCATGGACCGAAAGC 59.460 55.000 0.00 0.00 38.00 3.51
535 538 0.666913 CTACGTACCCTCATGGACCG 59.333 60.000 0.00 0.00 38.00 4.79
540 543 2.753452 AGTGTGTCTACGTACCCTCATG 59.247 50.000 0.00 0.00 0.00 3.07
639 643 2.626743 AGTAACAGACTAGTGTTGGCGT 59.373 45.455 0.00 0.00 40.89 5.68
640 644 3.299340 AGTAACAGACTAGTGTTGGCG 57.701 47.619 0.00 0.00 40.89 5.69
689 693 9.708092 GCTTAGAGATAATAGTCCGGTAAATTT 57.292 33.333 0.00 0.00 0.00 1.82
690 694 8.867097 TGCTTAGAGATAATAGTCCGGTAAATT 58.133 33.333 0.00 2.21 0.00 1.82
691 695 8.418597 TGCTTAGAGATAATAGTCCGGTAAAT 57.581 34.615 0.00 0.00 0.00 1.40
692 696 7.828508 TGCTTAGAGATAATAGTCCGGTAAA 57.171 36.000 0.00 0.00 0.00 2.01
693 697 9.175312 CTATGCTTAGAGATAATAGTCCGGTAA 57.825 37.037 0.00 0.00 0.00 2.85
694 698 8.546322 TCTATGCTTAGAGATAATAGTCCGGTA 58.454 37.037 0.00 0.00 30.79 4.02
695 699 7.403671 TCTATGCTTAGAGATAATAGTCCGGT 58.596 38.462 0.00 0.00 30.79 5.28
696 700 7.867305 TCTATGCTTAGAGATAATAGTCCGG 57.133 40.000 5.26 0.00 30.79 5.14
709 713 7.661437 ACATTTTCACACAACTCTATGCTTAGA 59.339 33.333 8.86 8.86 33.39 2.10
710 714 7.810658 ACATTTTCACACAACTCTATGCTTAG 58.189 34.615 0.14 0.14 0.00 2.18
711 715 7.744087 ACATTTTCACACAACTCTATGCTTA 57.256 32.000 0.00 0.00 0.00 3.09
712 716 6.639632 ACATTTTCACACAACTCTATGCTT 57.360 33.333 0.00 0.00 0.00 3.91
713 717 6.262944 TGAACATTTTCACACAACTCTATGCT 59.737 34.615 0.00 0.00 36.79 3.79
714 718 6.437928 TGAACATTTTCACACAACTCTATGC 58.562 36.000 0.00 0.00 36.79 3.14
761 765 7.715265 TTTGCACACAAAAGTTACTCAAAAA 57.285 28.000 0.00 0.00 42.73 1.94
773 777 7.629262 AGCACTGCTACATTTGCACACAAAA 62.629 40.000 0.21 0.00 42.56 2.44
774 778 6.231412 AGCACTGCTACATTTGCACACAAA 62.231 41.667 0.21 0.00 43.08 2.83
775 779 2.543445 GCACTGCTACATTTGCACACAA 60.543 45.455 0.00 0.00 36.37 3.33
776 780 1.001487 GCACTGCTACATTTGCACACA 60.001 47.619 0.00 0.00 36.37 3.72
777 781 1.267806 AGCACTGCTACATTTGCACAC 59.732 47.619 0.21 0.00 36.99 3.82
778 782 1.608055 AGCACTGCTACATTTGCACA 58.392 45.000 0.21 0.00 36.99 4.57
779 783 2.712057 AAGCACTGCTACATTTGCAC 57.288 45.000 3.33 0.00 38.25 4.57
780 784 2.622470 TGAAAGCACTGCTACATTTGCA 59.378 40.909 3.33 0.00 38.25 4.08
781 785 3.287312 TGAAAGCACTGCTACATTTGC 57.713 42.857 3.33 0.00 38.25 3.68
782 786 4.624024 CCATTGAAAGCACTGCTACATTTG 59.376 41.667 3.33 8.61 38.25 2.32
783 787 4.281688 ACCATTGAAAGCACTGCTACATTT 59.718 37.500 3.33 0.00 38.25 2.32
784 788 3.828451 ACCATTGAAAGCACTGCTACATT 59.172 39.130 3.33 0.00 38.25 2.71
785 789 3.424703 ACCATTGAAAGCACTGCTACAT 58.575 40.909 3.33 0.00 38.25 2.29
786 790 2.813754 GACCATTGAAAGCACTGCTACA 59.186 45.455 3.33 5.41 38.25 2.74
787 791 2.159653 CGACCATTGAAAGCACTGCTAC 60.160 50.000 3.33 2.73 38.25 3.58
788 792 2.076100 CGACCATTGAAAGCACTGCTA 58.924 47.619 3.33 0.00 38.25 3.49
789 793 0.877071 CGACCATTGAAAGCACTGCT 59.123 50.000 0.00 0.00 42.56 4.24
790 794 0.874390 TCGACCATTGAAAGCACTGC 59.126 50.000 0.00 0.00 0.00 4.40
791 795 3.624326 TTTCGACCATTGAAAGCACTG 57.376 42.857 0.00 0.00 31.98 3.66
792 796 3.612479 GCATTTCGACCATTGAAAGCACT 60.612 43.478 0.00 0.00 38.60 4.40
793 797 2.663119 GCATTTCGACCATTGAAAGCAC 59.337 45.455 0.00 0.00 38.60 4.40
794 798 2.557924 AGCATTTCGACCATTGAAAGCA 59.442 40.909 11.88 0.00 38.60 3.91
795 799 3.221964 AGCATTTCGACCATTGAAAGC 57.778 42.857 0.00 2.57 38.60 3.51
796 800 4.797471 TCAAGCATTTCGACCATTGAAAG 58.203 39.130 0.00 0.00 38.60 2.62
797 801 4.844998 TCAAGCATTTCGACCATTGAAA 57.155 36.364 0.00 0.00 39.45 2.69
798 802 4.518590 TCTTCAAGCATTTCGACCATTGAA 59.481 37.500 9.00 9.00 35.85 2.69
799 803 4.071423 TCTTCAAGCATTTCGACCATTGA 58.929 39.130 0.00 0.00 0.00 2.57
800 804 4.424061 TCTTCAAGCATTTCGACCATTG 57.576 40.909 0.00 0.00 0.00 2.82
801 805 5.452078 TTTCTTCAAGCATTTCGACCATT 57.548 34.783 0.00 0.00 0.00 3.16
802 806 5.452078 TTTTCTTCAAGCATTTCGACCAT 57.548 34.783 0.00 0.00 0.00 3.55
803 807 4.909696 TTTTCTTCAAGCATTTCGACCA 57.090 36.364 0.00 0.00 0.00 4.02
822 826 2.092323 GCTCTATTGGGCCGTCTTTTT 58.908 47.619 0.00 0.00 0.00 1.94
823 827 1.751437 GCTCTATTGGGCCGTCTTTT 58.249 50.000 0.00 0.00 0.00 2.27
824 828 0.462047 CGCTCTATTGGGCCGTCTTT 60.462 55.000 0.00 0.00 0.00 2.52
825 829 1.144057 CGCTCTATTGGGCCGTCTT 59.856 57.895 0.00 0.00 0.00 3.01
826 830 1.115930 ATCGCTCTATTGGGCCGTCT 61.116 55.000 0.00 0.00 0.00 4.18
827 831 0.946221 CATCGCTCTATTGGGCCGTC 60.946 60.000 0.00 0.00 0.00 4.79
828 832 1.069765 CATCGCTCTATTGGGCCGT 59.930 57.895 0.00 0.00 0.00 5.68
829 833 1.669115 CCATCGCTCTATTGGGCCG 60.669 63.158 0.00 0.00 0.00 6.13
830 834 0.886490 CACCATCGCTCTATTGGGCC 60.886 60.000 0.00 0.00 34.72 5.80
831 835 1.510480 GCACCATCGCTCTATTGGGC 61.510 60.000 0.00 0.00 34.72 5.36
832 836 1.224069 CGCACCATCGCTCTATTGGG 61.224 60.000 0.00 0.00 34.72 4.12
833 837 2.229039 CGCACCATCGCTCTATTGG 58.771 57.895 0.00 0.00 36.56 3.16
842 846 2.433145 ACTCACTGCGCACCATCG 60.433 61.111 5.66 0.00 0.00 3.84
843 847 2.393768 CCACTCACTGCGCACCATC 61.394 63.158 5.66 0.00 0.00 3.51
844 848 2.359107 CCACTCACTGCGCACCAT 60.359 61.111 5.66 0.00 0.00 3.55
845 849 4.624364 CCCACTCACTGCGCACCA 62.624 66.667 5.66 0.00 0.00 4.17
847 851 3.589654 TAGCCCACTCACTGCGCAC 62.590 63.158 5.66 0.00 0.00 5.34
848 852 3.310307 TAGCCCACTCACTGCGCA 61.310 61.111 10.98 10.98 0.00 6.09
849 853 2.815647 GTAGCCCACTCACTGCGC 60.816 66.667 0.00 0.00 0.00 6.09
850 854 2.125512 GGTAGCCCACTCACTGCG 60.126 66.667 0.00 0.00 0.00 5.18
851 855 1.078848 CTGGTAGCCCACTCACTGC 60.079 63.158 0.00 0.00 35.17 4.40
852 856 1.078848 GCTGGTAGCCCACTCACTG 60.079 63.158 0.00 0.00 35.17 3.66
853 857 1.127567 TTGCTGGTAGCCCACTCACT 61.128 55.000 0.00 0.00 41.51 3.41
854 858 0.250727 TTTGCTGGTAGCCCACTCAC 60.251 55.000 0.00 0.00 41.51 3.51
855 859 0.476338 TTTTGCTGGTAGCCCACTCA 59.524 50.000 0.00 0.00 41.51 3.41
856 860 1.168714 CTTTTGCTGGTAGCCCACTC 58.831 55.000 0.00 0.00 41.51 3.51
857 861 0.771127 TCTTTTGCTGGTAGCCCACT 59.229 50.000 0.00 0.00 41.51 4.00
858 862 1.541588 CTTCTTTTGCTGGTAGCCCAC 59.458 52.381 0.00 0.00 41.51 4.61
859 863 1.423541 TCTTCTTTTGCTGGTAGCCCA 59.576 47.619 0.00 0.00 41.51 5.36
860 864 2.200373 TCTTCTTTTGCTGGTAGCCC 57.800 50.000 0.00 0.00 41.51 5.19
861 865 4.488879 CAATTCTTCTTTTGCTGGTAGCC 58.511 43.478 0.00 0.00 41.51 3.93
862 866 3.922850 GCAATTCTTCTTTTGCTGGTAGC 59.077 43.478 0.64 0.00 43.75 3.58
863 867 5.125100 TGCAATTCTTCTTTTGCTGGTAG 57.875 39.130 8.84 0.00 46.50 3.18
864 868 5.726980 ATGCAATTCTTCTTTTGCTGGTA 57.273 34.783 8.84 0.00 46.50 3.25
865 869 4.612264 ATGCAATTCTTCTTTTGCTGGT 57.388 36.364 8.84 0.00 46.50 4.00
990 994 0.322366 TGCTGTCCATGGCGAAATCA 60.322 50.000 6.96 0.00 0.00 2.57
1401 1440 1.604593 GGCACCTGGATGTTGCACT 60.605 57.895 0.00 0.00 0.00 4.40
1444 1483 0.466124 GGGCAAGAGGCGAGACTAAT 59.534 55.000 0.00 0.00 46.16 1.73
1478 1518 2.027625 GGCGAGAGGGTCAACAACG 61.028 63.158 0.00 0.00 0.00 4.10
1570 1611 1.598130 GCTGTTGAGCACGTCCCTT 60.598 57.895 0.00 0.00 45.46 3.95
1760 1807 6.151480 CCCTAAAAATAGACCGGCAAACTTTA 59.849 38.462 0.00 0.00 0.00 1.85
1883 2012 6.212388 ACATGTATTTGCTTGATTTGGGGTTA 59.788 34.615 0.00 0.00 0.00 2.85
1888 2017 6.091169 GGACAACATGTATTTGCTTGATTTGG 59.909 38.462 0.00 0.00 0.00 3.28
1913 2042 9.603921 ACATAAATGAAGGCCAAATTAATGAAG 57.396 29.630 5.01 0.00 0.00 3.02
1946 2082 2.215196 TGAAAGTTCCTGCGGTGTAAC 58.785 47.619 0.00 0.00 0.00 2.50
2061 2200 4.529716 AAGGGAGTAACAACAGGGAAAA 57.470 40.909 0.00 0.00 0.00 2.29
2127 2266 6.727824 ATCTACATGAGCAGTACAACAAAC 57.272 37.500 0.00 0.00 0.00 2.93
2141 2280 7.904558 AATACAGAGACAGGAATCTACATGA 57.095 36.000 0.00 0.00 0.00 3.07
2150 2289 7.344612 TCCAGCTAAATAATACAGAGACAGGAA 59.655 37.037 0.00 0.00 0.00 3.36
2256 2395 2.621526 ACGAGCCCTAAACAAAAAGGTG 59.378 45.455 0.00 0.00 0.00 4.00
2259 2398 6.249035 TCATAACGAGCCCTAAACAAAAAG 57.751 37.500 0.00 0.00 0.00 2.27
2260 2399 6.431543 TGATCATAACGAGCCCTAAACAAAAA 59.568 34.615 0.00 0.00 0.00 1.94
2273 2412 4.747108 GGGACACTGATTGATCATAACGAG 59.253 45.833 0.00 0.00 36.02 4.18
2280 2419 6.312141 TCTATTTGGGACACTGATTGATCA 57.688 37.500 0.00 0.00 39.29 2.92
2295 2434 7.715657 TCGAAAATGAATTCCCATCTATTTGG 58.284 34.615 2.27 0.00 36.46 3.28
2303 2442 5.665916 AAGCTTCGAAAATGAATTCCCAT 57.334 34.783 2.27 0.00 0.00 4.00
2338 2477 1.026718 GCCCGACAGTCAATTGGGAG 61.027 60.000 13.97 0.00 42.95 4.30
2347 2486 5.830000 AAATTTAATTAGGCCCGACAGTC 57.170 39.130 0.00 0.00 0.00 3.51
2360 2499 7.109501 GCCCCACATTTCACCTAAATTTAATT 58.890 34.615 0.00 0.00 35.54 1.40
2364 2503 3.263170 GGCCCCACATTTCACCTAAATTT 59.737 43.478 0.00 0.00 35.54 1.82
2379 2518 0.893727 CCTACAAACACAGGCCCCAC 60.894 60.000 0.00 0.00 0.00 4.61
2405 2544 2.093075 ACAGAGACAGGAATCTGCATGG 60.093 50.000 2.23 0.00 45.56 3.66
2473 2628 3.814842 CGGCAGCTATATGTCCATTCAAA 59.185 43.478 0.00 0.00 0.00 2.69
2481 2636 1.376037 GGGCCGGCAGCTATATGTC 60.376 63.158 30.85 6.06 43.05 3.06
2484 2639 1.486726 GATTAGGGCCGGCAGCTATAT 59.513 52.381 30.85 13.10 43.05 0.86
2486 2641 0.838122 AGATTAGGGCCGGCAGCTAT 60.838 55.000 30.85 15.80 43.05 2.97
2742 2899 9.871238 TTCAATCTCCTTACTAATGTAGTCAAC 57.129 33.333 0.00 0.00 40.14 3.18
2763 2920 7.225145 CAGAAACATGAAACCACATTGTTCAAT 59.775 33.333 0.00 0.00 0.00 2.57
2881 3038 8.847196 GTTTAAGTGGAAGATTCTAACCAAGTT 58.153 33.333 12.17 11.27 34.11 2.66
2882 3039 7.996644 TGTTTAAGTGGAAGATTCTAACCAAGT 59.003 33.333 12.17 7.48 34.11 3.16
2883 3040 8.290325 GTGTTTAAGTGGAAGATTCTAACCAAG 58.710 37.037 12.17 0.00 34.11 3.61
2884 3041 7.229907 GGTGTTTAAGTGGAAGATTCTAACCAA 59.770 37.037 12.17 0.00 34.11 3.67
2885 3042 6.713450 GGTGTTTAAGTGGAAGATTCTAACCA 59.287 38.462 7.99 7.99 0.00 3.67
2886 3043 6.128363 CGGTGTTTAAGTGGAAGATTCTAACC 60.128 42.308 3.71 3.71 0.00 2.85
2887 3044 6.647895 TCGGTGTTTAAGTGGAAGATTCTAAC 59.352 38.462 0.00 0.00 0.00 2.34
2888 3045 6.761312 TCGGTGTTTAAGTGGAAGATTCTAA 58.239 36.000 0.00 0.00 0.00 2.10
2897 3054 3.071892 ACCAAGATCGGTGTTTAAGTGGA 59.928 43.478 0.00 0.00 38.07 4.02
3006 3164 6.672147 CCCAGTCTTGAAGTCAAAAATAGTG 58.328 40.000 0.00 0.00 35.15 2.74
3165 3353 1.262683 GTCAGTGCTCAGCTTTCACAC 59.737 52.381 0.00 5.45 33.44 3.82
3199 3387 3.555428 GCTTCTTGCTCTTCGCGT 58.445 55.556 5.77 0.00 43.27 6.01
3220 3408 4.582656 ACACTGTAAGCATAGGAGAGCTAG 59.417 45.833 0.00 0.00 40.90 3.42
3278 3466 1.602237 CCAGTGCGTACAAGGGGAT 59.398 57.895 6.38 0.00 0.00 3.85
3280 3468 2.746277 GCCAGTGCGTACAAGGGG 60.746 66.667 14.91 7.95 0.00 4.79
3281 3469 2.746277 GGCCAGTGCGTACAAGGG 60.746 66.667 14.91 10.11 38.85 3.95
3336 3629 7.717436 TGGGAAGTTGAATATATTATTGCGACA 59.283 33.333 0.00 0.00 0.00 4.35
3409 3702 5.025453 TGGCTGATGATGGCTACATAGATA 58.975 41.667 0.00 0.00 37.47 1.98
3534 3827 7.201884 GGCCCATGATGAGGAATGATTATTATG 60.202 40.741 0.00 0.00 0.00 1.90
3580 3876 7.173390 GCCCACAGGATTAGTATTTGAATAGAC 59.827 40.741 0.00 0.00 33.47 2.59
3620 3916 4.339814 ACCTATCCAATCTTCTCGAGTCAC 59.660 45.833 13.13 0.00 0.00 3.67
3659 3955 7.646526 AGTTAAACTATTCGAAACAAAGCCAAC 59.353 33.333 0.00 0.77 0.00 3.77
3789 4085 3.193691 GCTCTCTGTTCTTAGTACTGGCA 59.806 47.826 5.39 0.00 0.00 4.92
3791 4087 4.218635 TGTGCTCTCTGTTCTTAGTACTGG 59.781 45.833 5.39 0.00 0.00 4.00
3880 4239 5.236911 TGTCCAGAAATTTTGCTCAAATTGC 59.763 36.000 7.64 6.33 43.20 3.56
3887 4246 8.078596 GGTATATGATGTCCAGAAATTTTGCTC 58.921 37.037 0.00 0.00 0.00 4.26
3889 4248 7.147976 GGGTATATGATGTCCAGAAATTTTGC 58.852 38.462 0.00 0.00 0.00 3.68
3916 4275 3.057104 CGCCTTTCCCCGTTAAAAGAAAT 60.057 43.478 0.00 0.00 35.02 2.17
3920 4279 0.109458 GCGCCTTTCCCCGTTAAAAG 60.109 55.000 0.00 0.00 33.26 2.27
3982 4384 0.537371 CATGCCTTCCCCCGTAATCC 60.537 60.000 0.00 0.00 0.00 3.01
3989 4391 1.380380 CAGGAACATGCCTTCCCCC 60.380 63.158 10.66 0.00 40.78 5.40
3997 4399 1.198637 GTTCAGCTCACAGGAACATGC 59.801 52.381 8.56 0.00 40.39 4.06
4050 4452 5.046304 ACAGTGTAGCTCATGAGGTTGTAAT 60.046 40.000 30.69 14.62 40.09 1.89
4071 4473 7.862873 TCGTAGATGTTTCATATCTGCTTACAG 59.137 37.037 0.00 0.00 45.95 2.74
4075 4477 6.699204 CAGTCGTAGATGTTTCATATCTGCTT 59.301 38.462 0.00 0.00 40.67 3.91
4111 4513 1.479323 TGCGGATTACTACAGGTCCAC 59.521 52.381 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.