Multiple sequence alignment - TraesCS5B01G316400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G316400 chr5B 100.000 5505 0 0 1 5505 498888040 498882536 0.000000e+00 10166.0
1 TraesCS5B01G316400 chr5B 92.398 171 12 1 1895 2065 341533895 341533726 5.510000e-60 243.0
2 TraesCS5B01G316400 chr5B 93.827 162 8 2 3854 4014 696151682 696151842 5.510000e-60 243.0
3 TraesCS5B01G316400 chr5B 92.857 84 4 2 2630 2712 498885329 498885411 2.690000e-23 121.0
4 TraesCS5B01G316400 chr5B 92.857 42 3 0 4040 4081 691153426 691153467 1.660000e-05 62.1
5 TraesCS5B01G316400 chr5A 95.168 1904 69 8 1 1896 526401418 526399530 0.000000e+00 2985.0
6 TraesCS5B01G316400 chr5A 93.562 1227 47 11 2652 3860 526398854 526397642 0.000000e+00 1799.0
7 TraesCS5B01G316400 chr5A 88.791 910 55 18 4082 4988 526397552 526396687 0.000000e+00 1072.0
8 TraesCS5B01G316400 chr5A 96.683 603 11 5 2056 2656 526399529 526398934 0.000000e+00 994.0
9 TraesCS5B01G316400 chr5A 95.923 466 12 6 5042 5505 526396672 526396212 0.000000e+00 749.0
10 TraesCS5B01G316400 chr5D 94.460 1787 62 12 1 1767 413761505 413759736 0.000000e+00 2717.0
11 TraesCS5B01G316400 chr5D 93.162 585 27 8 2056 2634 413759645 413759068 0.000000e+00 846.0
12 TraesCS5B01G316400 chr5D 94.336 512 20 5 4997 5505 413701181 413700676 0.000000e+00 776.0
13 TraesCS5B01G316400 chr5D 85.984 635 50 20 4083 4713 413757893 413757294 1.290000e-180 643.0
14 TraesCS5B01G316400 chr5D 84.356 652 70 18 3236 3860 413758568 413757922 1.310000e-170 610.0
15 TraesCS5B01G316400 chr5D 89.815 216 16 3 2710 2919 413759069 413758854 7.030000e-69 272.0
16 TraesCS5B01G316400 chr5D 95.210 167 7 1 1892 2058 53583074 53583239 4.230000e-66 263.0
17 TraesCS5B01G316400 chr5D 91.573 178 12 3 1892 2069 542693292 542693466 5.510000e-60 243.0
18 TraesCS5B01G316400 chr5D 89.583 48 5 0 4034 4081 324411835 324411882 1.660000e-05 62.1
19 TraesCS5B01G316400 chrUn 95.718 397 14 3 785 1179 479193544 479193149 2.160000e-178 636.0
20 TraesCS5B01G316400 chr2D 96.407 167 5 1 1891 2057 362930973 362930808 1.950000e-69 274.0
21 TraesCS5B01G316400 chr2D 95.783 166 6 1 1892 2057 352947999 352947835 3.270000e-67 267.0
22 TraesCS5B01G316400 chr2D 93.789 161 9 1 3854 4014 446347857 446347698 1.980000e-59 241.0
23 TraesCS5B01G316400 chr3D 96.319 163 5 1 1895 2057 537154702 537154863 3.270000e-67 267.0
24 TraesCS5B01G316400 chr3D 93.827 162 8 2 3853 4014 603056851 603057010 5.510000e-60 243.0
25 TraesCS5B01G316400 chr3D 93.789 161 8 2 3854 4014 333504755 333504597 1.980000e-59 241.0
26 TraesCS5B01G316400 chr1D 96.319 163 5 1 1895 2057 338937212 338937373 3.270000e-67 267.0
27 TraesCS5B01G316400 chr1D 95.783 166 6 1 1895 2060 463382066 463381902 3.270000e-67 267.0
28 TraesCS5B01G316400 chr4D 95.758 165 6 1 1895 2059 3590635 3590472 1.180000e-66 265.0
29 TraesCS5B01G316400 chr4A 95.238 168 7 1 1895 2062 517406632 517406466 1.180000e-66 265.0
30 TraesCS5B01G316400 chr4A 90.270 185 14 4 1895 2078 232572870 232573051 7.130000e-59 239.0
31 TraesCS5B01G316400 chr4A 89.362 47 5 0 4035 4081 29155328 29155374 5.960000e-05 60.2
32 TraesCS5B01G316400 chr4A 88.462 52 2 3 4034 4081 101932001 101932052 5.960000e-05 60.2
33 TraesCS5B01G316400 chr2B 92.265 181 13 1 1883 2063 66994632 66994811 7.080000e-64 255.0
34 TraesCS5B01G316400 chr2B 93.491 169 10 1 1896 2064 258157725 258157892 3.290000e-62 250.0
35 TraesCS5B01G316400 chr2B 92.353 170 12 1 1895 2064 442788210 442788042 1.980000e-59 241.0
36 TraesCS5B01G316400 chr2B 95.455 44 2 0 4038 4081 674302647 674302604 2.750000e-08 71.3
37 TraesCS5B01G316400 chr4B 92.045 176 13 1 1895 2070 344463459 344463285 4.260000e-61 246.0
38 TraesCS5B01G316400 chr4B 93.827 162 8 2 3853 4014 483761690 483761849 5.510000e-60 243.0
39 TraesCS5B01G316400 chr4B 89.474 76 6 1 2633 2708 198280724 198280797 1.630000e-15 95.3
40 TraesCS5B01G316400 chr3B 94.410 161 8 1 3854 4014 335843015 335842856 4.260000e-61 246.0
41 TraesCS5B01G316400 chr3B 91.429 175 13 2 1895 2068 780937506 780937333 7.130000e-59 239.0
42 TraesCS5B01G316400 chr3B 93.182 44 3 0 4038 4081 424740486 424740529 1.280000e-06 65.8
43 TraesCS5B01G316400 chr7D 93.865 163 8 2 3852 4014 452445688 452445848 1.530000e-60 244.0
44 TraesCS5B01G316400 chr7D 80.126 317 54 3 5198 5505 495704010 495704326 1.540000e-55 228.0
45 TraesCS5B01G316400 chr7D 84.783 92 6 6 2633 2718 632805377 632805288 9.830000e-13 86.1
46 TraesCS5B01G316400 chr7D 93.023 43 3 0 4039 4081 119897080 119897038 4.600000e-06 63.9
47 TraesCS5B01G316400 chr1B 93.789 161 8 2 3854 4014 66377924 66377766 1.980000e-59 241.0
48 TraesCS5B01G316400 chr1B 88.482 191 15 5 1895 2083 334894505 334894690 2.000000e-54 224.0
49 TraesCS5B01G316400 chr6A 91.813 171 12 2 3845 4014 150923063 150923232 2.560000e-58 237.0
50 TraesCS5B01G316400 chr2A 91.716 169 11 3 1892 2058 608605386 608605553 1.190000e-56 231.0
51 TraesCS5B01G316400 chr2A 90.698 86 2 2 2629 2708 614703706 614703621 5.830000e-20 110.0
52 TraesCS5B01G316400 chr7A 80.201 298 53 3 5198 5489 561583434 561583731 9.280000e-53 219.0
53 TraesCS5B01G316400 chr7A 90.698 86 2 2 2629 2708 260341065 260340980 5.830000e-20 110.0
54 TraesCS5B01G316400 chr7A 85.393 89 7 4 2630 2716 106201704 106201788 2.730000e-13 87.9
55 TraesCS5B01G316400 chr7A 85.057 87 7 5 2633 2718 106201780 106201699 3.530000e-12 84.2
56 TraesCS5B01G316400 chr7B 88.158 76 7 1 2636 2711 27056754 27056681 7.600000e-14 89.8
57 TraesCS5B01G316400 chr6D 93.182 44 3 0 4038 4081 461318094 461318137 1.280000e-06 65.8
58 TraesCS5B01G316400 chr6D 94.737 38 2 0 4044 4081 9346280 9346243 5.960000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G316400 chr5B 498882536 498888040 5504 True 10166.0 10166 100.0000 1 5505 1 chr5B.!!$R2 5504
1 TraesCS5B01G316400 chr5A 526396212 526401418 5206 True 1519.8 2985 94.0254 1 5505 5 chr5A.!!$R1 5504
2 TraesCS5B01G316400 chr5D 413757294 413761505 4211 True 1017.6 2717 89.5554 1 4713 5 chr5D.!!$R2 4712
3 TraesCS5B01G316400 chr5D 413700676 413701181 505 True 776.0 776 94.3360 4997 5505 1 chr5D.!!$R1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 462 0.692476 CACTGGGGAACTGGTGATGA 59.308 55.000 0.00 0.0 35.79 2.92 F
910 917 1.270550 CTTTGGACACTTGCACATCCC 59.729 52.381 0.00 0.0 0.00 3.85 F
989 998 1.412343 TCTTCCCCAAGTTTTTGCTGC 59.588 47.619 0.00 0.0 32.79 5.25 F
1113 1122 1.452108 GTGGCGCCCATTAGAAGCT 60.452 57.895 26.77 0.0 35.28 3.74 F
2643 2829 0.190069 TGCCCATATACTCCCTCCGT 59.810 55.000 0.00 0.0 0.00 4.69 F
4003 4273 0.318120 AAATTGCAGCCCACTTTCGG 59.682 50.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1298 1308 2.091541 TGCCGTTTGATCTTCCATTCC 58.908 47.619 0.00 0.0 0.00 3.01 R
2500 2531 1.317613 TCTTCAACGCCTGCACAAAT 58.682 45.000 0.00 0.0 0.00 2.32 R
2636 2822 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.0 0.00 4.30 R
2762 2948 2.880890 AGTTCAGCACCTTCATGACAAC 59.119 45.455 0.00 0.0 0.00 3.32 R
4303 4608 0.107752 TCCACGCAGAGCAATGCATA 60.108 50.000 8.35 0.0 46.87 3.14 R
4953 5262 0.035534 ACACCAGATTACGCCATGCA 60.036 50.000 0.00 0.0 0.00 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
145 146 2.765250 GAACAGGAAGGTGCGAGCGA 62.765 60.000 0.00 0.00 0.00 4.93
147 148 4.070552 AGGAAGGTGCGAGCGACC 62.071 66.667 8.09 8.09 0.00 4.79
207 208 1.807573 GAAGGACGCTGCTCCGAAG 60.808 63.158 10.93 0.00 35.20 3.79
406 407 3.379452 GAGGAGGAGGATGAGAAGGAAA 58.621 50.000 0.00 0.00 0.00 3.13
431 432 5.364014 TGGATACTGGAGTGAATGAGCACT 61.364 45.833 0.00 0.00 44.97 4.40
432 433 7.364325 TGGATACTGGAGTGAATGAGCACTG 62.364 48.000 1.26 0.00 43.30 3.66
461 462 0.692476 CACTGGGGAACTGGTGATGA 59.308 55.000 0.00 0.00 35.79 2.92
462 463 1.283029 CACTGGGGAACTGGTGATGAT 59.717 52.381 0.00 0.00 35.79 2.45
484 485 6.306837 TGATTTCGTTTGTTTGTGTTCTGAAC 59.693 34.615 13.49 13.49 0.00 3.18
500 501 7.281549 GTGTTCTGAACTGAAACTTTTAGGGTA 59.718 37.037 20.18 0.00 0.00 3.69
631 632 9.099454 GTGAGTACCTAATAAAGAGTTGGATTG 57.901 37.037 0.00 0.00 0.00 2.67
720 727 6.516527 GCCAAACACCAGAAATTACTTCATGA 60.517 38.462 0.00 0.00 36.40 3.07
725 732 6.998074 ACACCAGAAATTACTTCATGACAAGA 59.002 34.615 0.00 0.00 36.40 3.02
910 917 1.270550 CTTTGGACACTTGCACATCCC 59.729 52.381 0.00 0.00 0.00 3.85
934 942 4.851639 AATATCTCCTTCCAGCAACAGT 57.148 40.909 0.00 0.00 0.00 3.55
955 964 4.164221 AGTTGCAGCCTTAGGATTAGCTAA 59.836 41.667 8.99 8.99 33.33 3.09
960 969 3.580895 AGCCTTAGGATTAGCTAAGCTCC 59.419 47.826 20.32 17.79 40.44 4.70
965 974 2.976185 AGGATTAGCTAAGCTCCCTTCC 59.024 50.000 20.32 15.14 40.44 3.46
972 981 2.158885 GCTAAGCTCCCTTCCGATTCTT 60.159 50.000 0.00 0.00 32.47 2.52
984 993 3.839778 TCCGATTCTTCCCCAAGTTTTT 58.160 40.909 0.00 0.00 0.00 1.94
985 994 3.572255 TCCGATTCTTCCCCAAGTTTTTG 59.428 43.478 0.00 0.00 0.00 2.44
986 995 3.317150 CGATTCTTCCCCAAGTTTTTGC 58.683 45.455 0.00 0.00 32.79 3.68
987 996 3.005791 CGATTCTTCCCCAAGTTTTTGCT 59.994 43.478 0.00 0.00 32.79 3.91
988 997 3.817709 TTCTTCCCCAAGTTTTTGCTG 57.182 42.857 0.00 0.00 32.79 4.41
989 998 1.412343 TCTTCCCCAAGTTTTTGCTGC 59.588 47.619 0.00 0.00 32.79 5.25
1094 1103 5.732633 CTCAGACTTCTCATCTGGTCATTT 58.267 41.667 2.37 0.00 43.25 2.32
1095 1104 5.485620 TCAGACTTCTCATCTGGTCATTTG 58.514 41.667 2.37 0.00 43.25 2.32
1110 1119 1.476085 CATTTGTGGCGCCCATTAGAA 59.524 47.619 26.77 12.51 35.28 2.10
1113 1122 1.452108 GTGGCGCCCATTAGAAGCT 60.452 57.895 26.77 0.00 35.28 3.74
1128 1137 3.146066 AGAAGCTGCAAAACATTACCGA 58.854 40.909 1.02 0.00 0.00 4.69
1216 1225 3.444742 TGTGAATATGCTTGCCTCCTTTG 59.555 43.478 0.00 0.00 0.00 2.77
1231 1240 4.884164 CCTCCTTTGACTTGATATGGAACC 59.116 45.833 0.00 0.00 0.00 3.62
1235 1244 5.183140 CCTTTGACTTGATATGGAACCGTTT 59.817 40.000 0.00 0.00 0.00 3.60
1236 1245 5.873179 TTGACTTGATATGGAACCGTTTC 57.127 39.130 0.00 0.00 0.00 2.78
1240 1249 7.335627 TGACTTGATATGGAACCGTTTCTTAT 58.664 34.615 0.00 0.00 31.71 1.73
1298 1308 3.129988 CCCCTTATTTTGCAGCTGAAGAG 59.870 47.826 20.43 1.24 0.00 2.85
1320 1330 3.131046 GGAATGGAAGATCAAACGGCAAT 59.869 43.478 0.00 0.00 0.00 3.56
1326 1336 4.580580 GGAAGATCAAACGGCAATTCCTAT 59.419 41.667 0.00 0.00 33.51 2.57
1377 1391 8.459521 TCTGACCAATATTTTTGCATTAAACG 57.540 30.769 0.00 0.00 0.00 3.60
1396 1411 1.526887 CGTATATGAAGGTTGCTGCGG 59.473 52.381 0.00 0.00 0.00 5.69
1533 1554 9.212641 CTACCTATTCCTGTTGATTCATATGTG 57.787 37.037 1.90 0.00 0.00 3.21
1543 1564 7.482474 TGTTGATTCATATGTGTATTGGCTTG 58.518 34.615 1.90 0.00 0.00 4.01
1556 1578 7.176515 TGTGTATTGGCTTGATTTACTGTTGAT 59.823 33.333 0.00 0.00 0.00 2.57
1784 1806 7.435192 GCAGAAACTTACTTTTACATTGTTGCT 59.565 33.333 0.00 0.00 0.00 3.91
1885 1911 5.102313 TCGACAACACTATGCTGAATACAG 58.898 41.667 0.00 0.00 45.91 2.74
1896 1922 8.883731 ACTATGCTGAATACAGTTCACAATTAC 58.116 33.333 0.00 0.00 45.04 1.89
1897 1923 7.928307 ATGCTGAATACAGTTCACAATTACT 57.072 32.000 0.00 0.00 45.04 2.24
1898 1924 7.364522 TGCTGAATACAGTTCACAATTACTC 57.635 36.000 0.00 0.00 45.04 2.59
1899 1925 6.371548 TGCTGAATACAGTTCACAATTACTCC 59.628 38.462 0.00 0.00 45.04 3.85
1900 1926 6.183360 GCTGAATACAGTTCACAATTACTCCC 60.183 42.308 0.00 0.00 45.04 4.30
1901 1927 7.016153 TGAATACAGTTCACAATTACTCCCT 57.984 36.000 0.00 0.00 0.00 4.20
1902 1928 7.458397 TGAATACAGTTCACAATTACTCCCTT 58.542 34.615 0.00 0.00 0.00 3.95
1903 1929 7.942341 TGAATACAGTTCACAATTACTCCCTTT 59.058 33.333 0.00 0.00 0.00 3.11
1904 1930 7.923414 ATACAGTTCACAATTACTCCCTTTC 57.077 36.000 0.00 0.00 0.00 2.62
1905 1931 4.755123 ACAGTTCACAATTACTCCCTTTCG 59.245 41.667 0.00 0.00 0.00 3.46
1906 1932 4.755123 CAGTTCACAATTACTCCCTTTCGT 59.245 41.667 0.00 0.00 0.00 3.85
1907 1933 5.238650 CAGTTCACAATTACTCCCTTTCGTT 59.761 40.000 0.00 0.00 0.00 3.85
1908 1934 5.469084 AGTTCACAATTACTCCCTTTCGTTC 59.531 40.000 0.00 0.00 0.00 3.95
1909 1935 4.320870 TCACAATTACTCCCTTTCGTTCC 58.679 43.478 0.00 0.00 0.00 3.62
1910 1936 4.041198 TCACAATTACTCCCTTTCGTTCCT 59.959 41.667 0.00 0.00 0.00 3.36
1911 1937 5.246656 TCACAATTACTCCCTTTCGTTCCTA 59.753 40.000 0.00 0.00 0.00 2.94
1912 1938 5.935789 CACAATTACTCCCTTTCGTTCCTAA 59.064 40.000 0.00 0.00 0.00 2.69
1913 1939 6.428771 CACAATTACTCCCTTTCGTTCCTAAA 59.571 38.462 0.00 0.00 0.00 1.85
1914 1940 7.120726 CACAATTACTCCCTTTCGTTCCTAAAT 59.879 37.037 0.00 0.00 0.00 1.40
1915 1941 8.323567 ACAATTACTCCCTTTCGTTCCTAAATA 58.676 33.333 0.00 0.00 0.00 1.40
1916 1942 9.338622 CAATTACTCCCTTTCGTTCCTAAATAT 57.661 33.333 0.00 0.00 0.00 1.28
1920 1946 8.087303 ACTCCCTTTCGTTCCTAAATATAAGT 57.913 34.615 0.00 0.00 0.00 2.24
1921 1947 8.202811 ACTCCCTTTCGTTCCTAAATATAAGTC 58.797 37.037 0.00 0.00 0.00 3.01
1922 1948 8.315220 TCCCTTTCGTTCCTAAATATAAGTCT 57.685 34.615 0.00 0.00 0.00 3.24
1923 1949 8.765517 TCCCTTTCGTTCCTAAATATAAGTCTT 58.234 33.333 0.00 0.00 0.00 3.01
1924 1950 9.392259 CCCTTTCGTTCCTAAATATAAGTCTTT 57.608 33.333 0.00 0.00 0.00 2.52
1941 1967 9.944376 ATAAGTCTTTTTAGAGATTGCACTACA 57.056 29.630 0.00 0.00 0.00 2.74
1942 1968 8.677148 AAGTCTTTTTAGAGATTGCACTACAA 57.323 30.769 0.00 0.00 44.01 2.41
1943 1969 8.677148 AGTCTTTTTAGAGATTGCACTACAAA 57.323 30.769 0.00 0.00 42.86 2.83
1944 1970 8.560374 AGTCTTTTTAGAGATTGCACTACAAAC 58.440 33.333 0.00 0.00 42.86 2.93
1945 1971 8.560374 GTCTTTTTAGAGATTGCACTACAAACT 58.440 33.333 0.00 0.00 43.46 2.66
1946 1972 9.772973 TCTTTTTAGAGATTGCACTACAAACTA 57.227 29.630 0.00 0.00 41.09 2.24
1947 1973 9.813080 CTTTTTAGAGATTGCACTACAAACTAC 57.187 33.333 0.00 0.00 41.09 2.73
1948 1974 8.896320 TTTTAGAGATTGCACTACAAACTACA 57.104 30.769 0.00 0.00 41.09 2.74
1949 1975 9.502091 TTTTAGAGATTGCACTACAAACTACAT 57.498 29.630 0.00 0.00 41.09 2.29
1951 1977 9.582431 TTAGAGATTGCACTACAAACTACATAC 57.418 33.333 0.00 0.00 41.09 2.39
1952 1978 6.752351 AGAGATTGCACTACAAACTACATACG 59.248 38.462 0.00 0.00 41.09 3.06
1953 1979 5.810587 AGATTGCACTACAAACTACATACGG 59.189 40.000 0.00 0.00 42.86 4.02
1954 1980 4.787260 TGCACTACAAACTACATACGGA 57.213 40.909 0.00 0.00 0.00 4.69
1955 1981 5.333299 TGCACTACAAACTACATACGGAT 57.667 39.130 0.00 0.00 0.00 4.18
1956 1982 5.106442 TGCACTACAAACTACATACGGATG 58.894 41.667 5.94 5.94 39.16 3.51
1957 1983 6.794981 TTGCACTACAAACTACATACGGATGT 60.795 38.462 19.12 19.12 41.55 3.06
1958 1984 6.127675 TGCACTACAAACTACATACGGATGTA 60.128 38.462 19.32 19.32 44.77 2.29
1959 1985 6.921857 GCACTACAAACTACATACGGATGTAT 59.078 38.462 20.64 8.38 45.42 2.29
1960 1986 8.077991 GCACTACAAACTACATACGGATGTATA 58.922 37.037 20.64 9.08 45.42 1.47
1998 2024 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1999 2025 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2000 2026 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2001 2027 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2002 2028 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2003 2029 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2004 2030 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2005 2031 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2006 2032 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2007 2033 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2008 2034 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2009 2035 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2010 2036 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2011 2037 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
2012 2038 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
2013 2039 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
2014 2040 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
2015 2041 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
2016 2042 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
2017 2043 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
2018 2044 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
2033 2059 8.324191 TCCATATTGGAATCTCTACAAAGACT 57.676 34.615 0.00 0.00 45.00 3.24
2034 2060 8.772250 TCCATATTGGAATCTCTACAAAGACTT 58.228 33.333 0.00 0.00 45.00 3.01
2051 2077 9.853177 ACAAAGACTTATATTTAGGAATGGAGG 57.147 33.333 0.00 0.00 0.00 4.30
2052 2078 9.289782 CAAAGACTTATATTTAGGAATGGAGGG 57.710 37.037 0.00 0.00 0.00 4.30
2053 2079 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
2054 2080 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
2055 2081 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
2056 2082 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
2057 2083 9.860393 ACTTATATTTAGGAATGGAGGGAGTAT 57.140 33.333 0.00 0.00 0.00 2.12
2132 2158 9.956640 TTTAGAAGTCTGCTTAGTAGTAGTAGT 57.043 33.333 0.00 0.00 35.77 2.73
2160 2186 2.930040 ACGGCTAACAGTGATCAAATCG 59.070 45.455 0.00 0.00 0.00 3.34
2413 2444 5.309282 AGGAACAGAAGAGAATCCTGAGTTT 59.691 40.000 0.00 0.00 39.03 2.66
2488 2519 4.623932 ATACATGTACCGGCAATCAGAT 57.376 40.909 7.96 0.00 0.00 2.90
2500 2531 4.976224 GCAATCAGATGCATATGCCATA 57.024 40.909 24.54 6.97 45.70 2.74
2637 2823 8.714906 AGGTATATTATGTTGCCCATATACTCC 58.285 37.037 0.00 0.00 36.18 3.85
2638 2824 7.937394 GGTATATTATGTTGCCCATATACTCCC 59.063 40.741 0.00 0.00 36.18 4.30
2639 2825 7.771506 ATATTATGTTGCCCATATACTCCCT 57.228 36.000 0.00 0.00 35.96 4.20
2640 2826 5.499004 TTATGTTGCCCATATACTCCCTC 57.501 43.478 0.00 0.00 35.96 4.30
2641 2827 2.054799 TGTTGCCCATATACTCCCTCC 58.945 52.381 0.00 0.00 0.00 4.30
2642 2828 1.002087 GTTGCCCATATACTCCCTCCG 59.998 57.143 0.00 0.00 0.00 4.63
2643 2829 0.190069 TGCCCATATACTCCCTCCGT 59.810 55.000 0.00 0.00 0.00 4.69
2644 2830 1.349067 GCCCATATACTCCCTCCGTT 58.651 55.000 0.00 0.00 0.00 4.44
2645 2831 1.275573 GCCCATATACTCCCTCCGTTC 59.724 57.143 0.00 0.00 0.00 3.95
2646 2832 1.900486 CCCATATACTCCCTCCGTTCC 59.100 57.143 0.00 0.00 0.00 3.62
2647 2833 2.605257 CCATATACTCCCTCCGTTCCA 58.395 52.381 0.00 0.00 0.00 3.53
2648 2834 3.173965 CCATATACTCCCTCCGTTCCAT 58.826 50.000 0.00 0.00 0.00 3.41
2649 2835 4.350245 CCATATACTCCCTCCGTTCCATA 58.650 47.826 0.00 0.00 0.00 2.74
2650 2836 4.962995 CCATATACTCCCTCCGTTCCATAT 59.037 45.833 0.00 0.00 0.00 1.78
2651 2837 5.425539 CCATATACTCCCTCCGTTCCATATT 59.574 44.000 0.00 0.00 0.00 1.28
2652 2838 6.610020 CCATATACTCCCTCCGTTCCATATTA 59.390 42.308 0.00 0.00 0.00 0.98
2653 2839 5.997384 ATACTCCCTCCGTTCCATATTAC 57.003 43.478 0.00 0.00 0.00 1.89
2654 2840 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
2655 2841 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
2656 2842 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
2657 2843 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
2658 2844 3.305199 CCCTCCGTTCCATATTACTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
2659 2845 3.552541 CTCCGTTCCATATTACTCGTCG 58.447 50.000 0.00 0.00 0.00 5.12
2660 2846 2.945008 TCCGTTCCATATTACTCGTCGT 59.055 45.455 0.00 0.00 0.00 4.34
2661 2847 3.040795 CCGTTCCATATTACTCGTCGTG 58.959 50.000 0.00 0.00 0.00 4.35
2662 2848 3.040795 CGTTCCATATTACTCGTCGTGG 58.959 50.000 0.00 0.00 0.00 4.94
2663 2849 3.488047 CGTTCCATATTACTCGTCGTGGT 60.488 47.826 0.00 0.00 0.00 4.16
2664 2850 4.427312 GTTCCATATTACTCGTCGTGGTT 58.573 43.478 0.00 0.00 0.00 3.67
2665 2851 4.724074 TCCATATTACTCGTCGTGGTTT 57.276 40.909 0.00 0.00 0.00 3.27
2666 2852 5.075858 TCCATATTACTCGTCGTGGTTTT 57.924 39.130 0.00 0.00 0.00 2.43
2667 2853 6.206395 TCCATATTACTCGTCGTGGTTTTA 57.794 37.500 0.00 0.00 0.00 1.52
2668 2854 6.267817 TCCATATTACTCGTCGTGGTTTTAG 58.732 40.000 0.00 0.00 0.00 1.85
2669 2855 6.095300 TCCATATTACTCGTCGTGGTTTTAGA 59.905 38.462 0.00 0.00 0.00 2.10
2670 2856 6.921857 CCATATTACTCGTCGTGGTTTTAGAT 59.078 38.462 0.00 0.00 0.00 1.98
2671 2857 7.114529 CCATATTACTCGTCGTGGTTTTAGATC 59.885 40.741 0.00 0.00 0.00 2.75
2672 2858 5.633830 TTACTCGTCGTGGTTTTAGATCT 57.366 39.130 0.00 0.00 0.00 2.75
2673 2859 6.741992 TTACTCGTCGTGGTTTTAGATCTA 57.258 37.500 0.00 0.00 0.00 1.98
2674 2860 5.633830 ACTCGTCGTGGTTTTAGATCTAA 57.366 39.130 11.24 11.24 0.00 2.10
2675 2861 6.017400 ACTCGTCGTGGTTTTAGATCTAAA 57.983 37.500 21.46 21.46 33.63 1.85
2676 2862 6.449698 ACTCGTCGTGGTTTTAGATCTAAAA 58.550 36.000 28.75 28.75 41.23 1.52
2689 2875 9.545105 TTTTAGATCTAAAACCACGACAAGTAA 57.455 29.630 28.75 8.87 39.34 2.24
2690 2876 9.715121 TTTAGATCTAAAACCACGACAAGTAAT 57.285 29.630 22.73 0.00 32.64 1.89
2693 2879 9.314321 AGATCTAAAACCACGACAAGTAATATG 57.686 33.333 0.00 0.00 0.00 1.78
2694 2880 7.837202 TCTAAAACCACGACAAGTAATATGG 57.163 36.000 0.00 0.00 0.00 2.74
2695 2881 7.613585 TCTAAAACCACGACAAGTAATATGGA 58.386 34.615 0.00 0.00 0.00 3.41
2696 2882 8.095792 TCTAAAACCACGACAAGTAATATGGAA 58.904 33.333 0.00 0.00 0.00 3.53
2697 2883 6.490566 AAACCACGACAAGTAATATGGAAC 57.509 37.500 0.00 0.00 0.00 3.62
2718 2904 8.921205 TGGAACAGAGGGAGTAGTATTATTTAC 58.079 37.037 0.00 0.00 0.00 2.01
2762 2948 2.084546 GGATTGTCGGTCCTTTTCCAG 58.915 52.381 0.00 0.00 32.85 3.86
2819 3005 9.586435 GTTTATTAATGTGATTTGGCTTAAGCT 57.414 29.630 25.88 7.05 41.70 3.74
2917 3107 2.951229 ATTCTCTGTTGTCGGGGTTT 57.049 45.000 0.00 0.00 0.00 3.27
2928 3118 2.148768 GTCGGGGTTTTCTGTTAGTGG 58.851 52.381 0.00 0.00 0.00 4.00
2939 3129 8.600625 GGTTTTCTGTTAGTGGAAATTTGTTTC 58.399 33.333 0.00 0.00 32.54 2.78
2960 3150 7.918033 TGTTTCGCAATTTGAACATTCTCTTTA 59.082 29.630 0.00 0.00 0.00 1.85
3170 3366 3.700538 ACCATGCTATTTGTGGATGTGT 58.299 40.909 0.00 0.00 36.82 3.72
3224 3420 3.473923 TGTCATCTTCAAGCTGACACA 57.526 42.857 18.16 0.00 43.78 3.72
3363 3600 4.929781 AGATACGTTCAATCGGTTAGGAC 58.070 43.478 0.00 0.00 34.94 3.85
3427 3664 5.181690 TGTTATCAGGCAGTTGTGTTTTC 57.818 39.130 0.00 0.00 0.00 2.29
3440 3677 4.231718 TGTGTTTTCGCCTTGTTTATCC 57.768 40.909 0.00 0.00 0.00 2.59
3442 3679 4.023536 TGTGTTTTCGCCTTGTTTATCCTC 60.024 41.667 0.00 0.00 0.00 3.71
3462 3699 3.057019 TCTGTGTACTGTTGCGATTGTC 58.943 45.455 0.00 0.00 0.00 3.18
3537 3775 2.375014 GGGGTTGAACCTCCTTTTCA 57.625 50.000 14.87 0.00 38.64 2.69
3654 3921 6.402011 GCAAAGTGTTTTGTGTAAAATGCACT 60.402 34.615 0.00 0.00 44.41 4.40
3722 3991 3.184581 GCTAAGACCAGACACAGTTTTCG 59.815 47.826 0.00 0.00 0.00 3.46
3797 4066 5.239963 ACTTGTTAAGTGGTTGTTAATCCCG 59.760 40.000 0.00 0.00 41.01 5.14
3819 4089 6.281405 CCGGTAGATAGTTTATGCTTGTTCT 58.719 40.000 0.00 0.00 0.00 3.01
3826 4096 8.494433 AGATAGTTTATGCTTGTTCTCCCATTA 58.506 33.333 0.00 0.00 0.00 1.90
3844 4114 5.361857 CCCATTACTGGATTGCTCTCATTTT 59.638 40.000 0.00 0.00 46.37 1.82
3873 4143 7.855296 CGTGTGTTGACGTATAAATGTATTG 57.145 36.000 0.00 0.00 34.56 1.90
3874 4144 6.406896 CGTGTGTTGACGTATAAATGTATTGC 59.593 38.462 0.00 0.00 34.56 3.56
3875 4145 6.685403 GTGTGTTGACGTATAAATGTATTGCC 59.315 38.462 0.00 0.00 0.00 4.52
3876 4146 6.596106 TGTGTTGACGTATAAATGTATTGCCT 59.404 34.615 0.00 0.00 0.00 4.75
3877 4147 7.764901 TGTGTTGACGTATAAATGTATTGCCTA 59.235 33.333 0.00 0.00 0.00 3.93
3878 4148 8.273557 GTGTTGACGTATAAATGTATTGCCTAG 58.726 37.037 0.00 0.00 0.00 3.02
3879 4149 7.982919 TGTTGACGTATAAATGTATTGCCTAGT 59.017 33.333 0.00 0.00 0.00 2.57
3880 4150 8.485591 GTTGACGTATAAATGTATTGCCTAGTC 58.514 37.037 0.00 0.00 0.00 2.59
3881 4151 7.948357 TGACGTATAAATGTATTGCCTAGTCT 58.052 34.615 0.00 0.00 0.00 3.24
3882 4152 8.080417 TGACGTATAAATGTATTGCCTAGTCTC 58.920 37.037 0.00 0.00 0.00 3.36
3883 4153 8.179509 ACGTATAAATGTATTGCCTAGTCTCT 57.820 34.615 0.00 0.00 0.00 3.10
3884 4154 8.639761 ACGTATAAATGTATTGCCTAGTCTCTT 58.360 33.333 0.00 0.00 0.00 2.85
3885 4155 9.130312 CGTATAAATGTATTGCCTAGTCTCTTC 57.870 37.037 0.00 0.00 0.00 2.87
3886 4156 9.425577 GTATAAATGTATTGCCTAGTCTCTTCC 57.574 37.037 0.00 0.00 0.00 3.46
3887 4157 5.957771 AATGTATTGCCTAGTCTCTTCCA 57.042 39.130 0.00 0.00 0.00 3.53
3888 4158 6.506538 AATGTATTGCCTAGTCTCTTCCAT 57.493 37.500 0.00 0.00 0.00 3.41
3889 4159 5.537300 TGTATTGCCTAGTCTCTTCCATC 57.463 43.478 0.00 0.00 0.00 3.51
3890 4160 4.962362 TGTATTGCCTAGTCTCTTCCATCA 59.038 41.667 0.00 0.00 0.00 3.07
3891 4161 4.686191 ATTGCCTAGTCTCTTCCATCAG 57.314 45.455 0.00 0.00 0.00 2.90
3892 4162 3.388552 TGCCTAGTCTCTTCCATCAGA 57.611 47.619 0.00 0.00 0.00 3.27
3893 4163 3.921104 TGCCTAGTCTCTTCCATCAGAT 58.079 45.455 0.00 0.00 0.00 2.90
3894 4164 3.894427 TGCCTAGTCTCTTCCATCAGATC 59.106 47.826 0.00 0.00 0.00 2.75
3895 4165 3.057596 GCCTAGTCTCTTCCATCAGATCG 60.058 52.174 0.00 0.00 0.00 3.69
3896 4166 3.505680 CCTAGTCTCTTCCATCAGATCGG 59.494 52.174 0.00 0.00 0.00 4.18
3897 4167 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
3898 4168 2.955660 AGTCTCTTCCATCAGATCGGTC 59.044 50.000 0.00 0.00 0.00 4.79
3899 4169 2.955660 GTCTCTTCCATCAGATCGGTCT 59.044 50.000 0.00 0.00 34.14 3.85
3900 4170 3.383185 GTCTCTTCCATCAGATCGGTCTT 59.617 47.826 0.00 0.00 30.42 3.01
3901 4171 4.026744 TCTCTTCCATCAGATCGGTCTTT 58.973 43.478 0.00 0.00 30.42 2.52
3902 4172 4.467795 TCTCTTCCATCAGATCGGTCTTTT 59.532 41.667 0.00 0.00 30.42 2.27
3903 4173 4.507710 TCTTCCATCAGATCGGTCTTTTG 58.492 43.478 0.00 0.00 30.42 2.44
3904 4174 3.266510 TCCATCAGATCGGTCTTTTGG 57.733 47.619 14.89 14.89 36.16 3.28
3905 4175 2.092968 TCCATCAGATCGGTCTTTTGGG 60.093 50.000 19.00 9.24 35.80 4.12
3906 4176 2.356125 CCATCAGATCGGTCTTTTGGGT 60.356 50.000 13.67 0.00 33.32 4.51
3907 4177 3.347216 CATCAGATCGGTCTTTTGGGTT 58.653 45.455 0.00 0.00 30.42 4.11
3908 4178 3.053831 TCAGATCGGTCTTTTGGGTTC 57.946 47.619 0.00 0.00 30.42 3.62
3909 4179 2.370519 TCAGATCGGTCTTTTGGGTTCA 59.629 45.455 0.00 0.00 30.42 3.18
3910 4180 3.009033 TCAGATCGGTCTTTTGGGTTCAT 59.991 43.478 0.00 0.00 30.42 2.57
3911 4181 3.758554 CAGATCGGTCTTTTGGGTTCATT 59.241 43.478 0.00 0.00 30.42 2.57
3912 4182 3.758554 AGATCGGTCTTTTGGGTTCATTG 59.241 43.478 0.00 0.00 0.00 2.82
3913 4183 2.235016 TCGGTCTTTTGGGTTCATTGG 58.765 47.619 0.00 0.00 0.00 3.16
3914 4184 1.336795 CGGTCTTTTGGGTTCATTGGC 60.337 52.381 0.00 0.00 0.00 4.52
3915 4185 1.970640 GGTCTTTTGGGTTCATTGGCT 59.029 47.619 0.00 0.00 0.00 4.75
3916 4186 3.161866 GGTCTTTTGGGTTCATTGGCTA 58.838 45.455 0.00 0.00 0.00 3.93
3917 4187 3.193479 GGTCTTTTGGGTTCATTGGCTAG 59.807 47.826 0.00 0.00 0.00 3.42
3918 4188 4.079253 GTCTTTTGGGTTCATTGGCTAGA 58.921 43.478 0.00 0.00 0.00 2.43
3919 4189 4.156739 GTCTTTTGGGTTCATTGGCTAGAG 59.843 45.833 0.00 0.00 0.00 2.43
3920 4190 2.128771 TTGGGTTCATTGGCTAGAGC 57.871 50.000 0.00 0.00 41.14 4.09
3921 4191 0.991146 TGGGTTCATTGGCTAGAGCA 59.009 50.000 3.54 0.00 44.36 4.26
3922 4192 1.565759 TGGGTTCATTGGCTAGAGCAT 59.434 47.619 3.54 0.00 44.36 3.79
3923 4193 1.952296 GGGTTCATTGGCTAGAGCATG 59.048 52.381 3.54 0.00 44.36 4.06
3924 4194 1.336125 GGTTCATTGGCTAGAGCATGC 59.664 52.381 10.51 10.51 44.36 4.06
3925 4195 2.019249 GTTCATTGGCTAGAGCATGCA 58.981 47.619 21.98 0.00 44.36 3.96
3926 4196 1.671979 TCATTGGCTAGAGCATGCAC 58.328 50.000 21.98 14.59 44.36 4.57
3927 4197 1.065272 TCATTGGCTAGAGCATGCACA 60.065 47.619 21.98 5.82 44.36 4.57
3928 4198 1.954382 CATTGGCTAGAGCATGCACAT 59.046 47.619 21.98 7.53 44.36 3.21
3929 4199 1.671979 TTGGCTAGAGCATGCACATC 58.328 50.000 21.98 9.02 44.36 3.06
3930 4200 0.835276 TGGCTAGAGCATGCACATCT 59.165 50.000 21.98 16.34 44.36 2.90
3931 4201 2.041701 TGGCTAGAGCATGCACATCTA 58.958 47.619 21.98 16.60 44.36 1.98
3932 4202 2.224137 TGGCTAGAGCATGCACATCTAC 60.224 50.000 21.98 11.95 44.36 2.59
3933 4203 2.224137 GGCTAGAGCATGCACATCTACA 60.224 50.000 21.98 0.00 44.36 2.74
3934 4204 3.556633 GGCTAGAGCATGCACATCTACAT 60.557 47.826 21.98 0.00 44.36 2.29
3935 4205 3.432592 GCTAGAGCATGCACATCTACATG 59.567 47.826 21.98 7.93 45.19 3.21
3936 4206 2.847441 AGAGCATGCACATCTACATGG 58.153 47.619 21.98 0.00 43.13 3.66
3937 4207 2.723322 AGCATGCACATCTACATGGT 57.277 45.000 21.98 2.10 46.94 3.55
3940 4210 4.675190 GCATGCACATCTACATGGTATC 57.325 45.455 14.21 0.00 43.13 2.24
3941 4211 4.321718 GCATGCACATCTACATGGTATCT 58.678 43.478 14.21 0.00 43.13 1.98
3942 4212 4.758674 GCATGCACATCTACATGGTATCTT 59.241 41.667 14.21 0.00 43.13 2.40
3943 4213 5.334646 GCATGCACATCTACATGGTATCTTG 60.335 44.000 14.21 0.00 43.13 3.02
3944 4214 5.612725 TGCACATCTACATGGTATCTTGA 57.387 39.130 0.00 0.00 33.82 3.02
3945 4215 5.604565 TGCACATCTACATGGTATCTTGAG 58.395 41.667 0.00 0.00 33.82 3.02
3946 4216 4.450419 GCACATCTACATGGTATCTTGAGC 59.550 45.833 0.00 0.00 33.82 4.26
3947 4217 4.993584 CACATCTACATGGTATCTTGAGCC 59.006 45.833 0.00 0.00 33.82 4.70
3948 4218 4.655649 ACATCTACATGGTATCTTGAGCCA 59.344 41.667 0.00 0.00 33.82 4.75
3949 4219 5.130975 ACATCTACATGGTATCTTGAGCCAA 59.869 40.000 0.00 0.00 35.74 4.52
3950 4220 5.282055 TCTACATGGTATCTTGAGCCAAG 57.718 43.478 8.22 8.22 42.25 3.61
3951 4221 8.783767 ACATCTACATGGTATCTTGAGCCAAGA 61.784 40.741 16.66 16.66 42.94 3.02
3973 4243 2.347490 TTGAGCTCAAGACCCGGC 59.653 61.111 25.16 0.00 0.00 6.13
3974 4244 2.217038 TTGAGCTCAAGACCCGGCT 61.217 57.895 25.16 0.00 37.77 5.52
3975 4245 2.125350 GAGCTCAAGACCCGGCTG 60.125 66.667 9.40 0.00 35.01 4.85
3976 4246 3.672295 GAGCTCAAGACCCGGCTGG 62.672 68.421 9.40 3.88 41.37 4.85
3985 4255 4.010575 CCCGGCTGGTGCAATTAA 57.989 55.556 11.58 0.00 41.91 1.40
3986 4256 2.271940 CCCGGCTGGTGCAATTAAA 58.728 52.632 11.58 0.00 41.91 1.52
3987 4257 0.823460 CCCGGCTGGTGCAATTAAAT 59.177 50.000 11.58 0.00 41.91 1.40
3988 4258 1.206849 CCCGGCTGGTGCAATTAAATT 59.793 47.619 11.58 0.00 41.91 1.82
3989 4259 2.270047 CCGGCTGGTGCAATTAAATTG 58.730 47.619 2.29 0.00 43.06 2.32
4001 4271 5.535043 CAATTAAATTGCAGCCCACTTTC 57.465 39.130 0.00 0.00 32.92 2.62
4002 4272 3.296322 TTAAATTGCAGCCCACTTTCG 57.704 42.857 0.00 0.00 30.20 3.46
4003 4273 0.318120 AAATTGCAGCCCACTTTCGG 59.682 50.000 0.00 0.00 0.00 4.30
4004 4274 0.827507 AATTGCAGCCCACTTTCGGT 60.828 50.000 0.00 0.00 0.00 4.69
4005 4275 1.244019 ATTGCAGCCCACTTTCGGTC 61.244 55.000 0.00 0.00 0.00 4.79
4006 4276 3.056328 GCAGCCCACTTTCGGTCC 61.056 66.667 0.00 0.00 0.00 4.46
4007 4277 2.429930 CAGCCCACTTTCGGTCCA 59.570 61.111 0.00 0.00 0.00 4.02
4008 4278 1.966451 CAGCCCACTTTCGGTCCAC 60.966 63.158 0.00 0.00 0.00 4.02
4009 4279 3.047877 GCCCACTTTCGGTCCACG 61.048 66.667 0.00 0.00 46.11 4.94
4010 4280 2.424302 CCCACTTTCGGTCCACGT 59.576 61.111 0.00 0.00 44.69 4.49
4011 4281 1.227734 CCCACTTTCGGTCCACGTT 60.228 57.895 0.00 0.00 44.69 3.99
4012 4282 0.816421 CCCACTTTCGGTCCACGTTT 60.816 55.000 0.00 0.00 44.69 3.60
4013 4283 1.540797 CCCACTTTCGGTCCACGTTTA 60.541 52.381 0.00 0.00 44.69 2.01
4021 4291 3.204526 TCGGTCCACGTTTATGTGTTTT 58.795 40.909 0.00 0.00 44.69 2.43
4026 4296 5.207033 GTCCACGTTTATGTGTTTTACCAC 58.793 41.667 0.00 0.00 38.20 4.16
4047 4317 6.100279 ACCACTGAGATTTAGATATTGCTCCA 59.900 38.462 0.00 0.00 0.00 3.86
4058 4328 2.214376 ATTGCTCCATCCGTTCCAAA 57.786 45.000 0.00 0.00 0.00 3.28
4059 4329 1.988293 TTGCTCCATCCGTTCCAAAA 58.012 45.000 0.00 0.00 0.00 2.44
4060 4330 2.214376 TGCTCCATCCGTTCCAAAAT 57.786 45.000 0.00 0.00 0.00 1.82
4063 4333 3.694072 TGCTCCATCCGTTCCAAAATAAG 59.306 43.478 0.00 0.00 0.00 1.73
4065 4335 4.438744 GCTCCATCCGTTCCAAAATAAGTG 60.439 45.833 0.00 0.00 0.00 3.16
4066 4336 4.658063 TCCATCCGTTCCAAAATAAGTGT 58.342 39.130 0.00 0.00 0.00 3.55
4067 4337 4.698304 TCCATCCGTTCCAAAATAAGTGTC 59.302 41.667 0.00 0.00 0.00 3.67
4068 4338 4.436852 CCATCCGTTCCAAAATAAGTGTCG 60.437 45.833 0.00 0.00 0.00 4.35
4069 4339 3.731089 TCCGTTCCAAAATAAGTGTCGT 58.269 40.909 0.00 0.00 0.00 4.34
4070 4340 3.495377 TCCGTTCCAAAATAAGTGTCGTG 59.505 43.478 0.00 0.00 0.00 4.35
4071 4341 3.364565 CCGTTCCAAAATAAGTGTCGTGG 60.365 47.826 0.00 0.00 0.00 4.94
4073 4343 4.260866 CGTTCCAAAATAAGTGTCGTGGTT 60.261 41.667 0.00 0.00 0.00 3.67
4074 4344 5.584442 GTTCCAAAATAAGTGTCGTGGTTT 58.416 37.500 0.00 0.00 0.00 3.27
4075 4345 5.838531 TCCAAAATAAGTGTCGTGGTTTT 57.161 34.783 0.00 0.00 0.00 2.43
4077 4347 6.961576 TCCAAAATAAGTGTCGTGGTTTTAG 58.038 36.000 0.00 0.00 0.00 1.85
4080 4350 7.377662 CCAAAATAAGTGTCGTGGTTTTAGTTC 59.622 37.037 0.00 0.00 0.00 3.01
4114 4416 1.881973 TCACATTTGAGAACCAGCAGC 59.118 47.619 0.00 0.00 0.00 5.25
4123 4425 5.063180 TGAGAACCAGCAGCATTAATTTG 57.937 39.130 0.00 0.00 0.00 2.32
4269 4571 8.856490 TTTTCTAGTTCTTGAATTGCAACTTC 57.144 30.769 0.00 7.90 31.52 3.01
4285 4590 4.111916 CAACTTCAAGAACAAAACGGCAT 58.888 39.130 0.00 0.00 0.00 4.40
4332 4637 0.817654 TCTGCGTGGACACTCATAGG 59.182 55.000 0.56 0.00 0.00 2.57
4363 4668 2.076863 AGCACCGATGTTTAACTCAGC 58.923 47.619 0.00 0.00 0.00 4.26
4405 4711 0.882474 GGTCTCTGATAGCGGCGTAT 59.118 55.000 9.37 5.20 0.00 3.06
4453 4759 1.264749 TGTTCCATCTGGACGGAGGG 61.265 60.000 5.50 5.50 45.39 4.30
4477 4783 5.738909 CTCTACACATGGTTCAAGGAAGAT 58.261 41.667 0.00 0.00 0.00 2.40
4483 4789 4.785376 ACATGGTTCAAGGAAGATCTACCT 59.215 41.667 9.44 0.00 38.23 3.08
4540 4846 5.515626 CCTGTCAGTTATTAGTTGCTACGAC 59.484 44.000 0.00 0.00 0.00 4.34
4558 4864 5.743026 ACGACATTGTTGTTGTTCATACA 57.257 34.783 3.72 0.00 46.33 2.29
4570 4876 5.574891 TTGTTCATACAACTGCAGTTTGT 57.425 34.783 29.23 27.57 39.29 2.83
4571 4877 5.574891 TGTTCATACAACTGCAGTTTGTT 57.425 34.783 29.23 18.05 35.83 2.83
4572 4878 5.960113 TGTTCATACAACTGCAGTTTGTTT 58.040 33.333 29.23 20.17 35.83 2.83
4573 4879 5.804473 TGTTCATACAACTGCAGTTTGTTTG 59.196 36.000 29.23 27.67 35.83 2.93
4574 4880 5.574891 TCATACAACTGCAGTTTGTTTGT 57.425 34.783 29.23 24.70 35.83 2.83
4685 4991 3.259064 GTGTGAAGGTGCGCTAGATTTA 58.741 45.455 9.73 0.00 0.00 1.40
4689 4995 4.811557 GTGAAGGTGCGCTAGATTTATCTT 59.188 41.667 9.73 0.00 38.32 2.40
4697 5003 4.991056 GCGCTAGATTTATCTTGGATGTCA 59.009 41.667 0.00 0.00 38.32 3.58
4713 5019 5.008613 TGGATGTCAAACACTTGAACTTAGC 59.991 40.000 0.00 0.00 43.18 3.09
4718 5024 4.574828 TCAAACACTTGAACTTAGCCTCAC 59.425 41.667 0.00 0.00 38.65 3.51
4780 5086 2.154462 GAATCCCATGCATCCCTAACG 58.846 52.381 0.00 0.00 0.00 3.18
4785 5091 0.179048 CATGCATCCCTAACGAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
4789 5095 1.871080 CATCCCTAACGAGCCATGTC 58.129 55.000 0.00 0.00 0.00 3.06
4795 5101 2.868583 CCTAACGAGCCATGTCAATGAG 59.131 50.000 0.00 0.00 35.67 2.90
4796 5102 1.089920 AACGAGCCATGTCAATGAGC 58.910 50.000 0.00 0.00 35.67 4.26
4797 5103 0.251354 ACGAGCCATGTCAATGAGCT 59.749 50.000 0.00 0.00 40.70 4.09
4798 5104 1.339438 ACGAGCCATGTCAATGAGCTT 60.339 47.619 0.00 0.00 39.17 3.74
4799 5105 1.741706 CGAGCCATGTCAATGAGCTTT 59.258 47.619 0.00 0.00 39.17 3.51
4800 5106 2.477357 CGAGCCATGTCAATGAGCTTTG 60.477 50.000 0.00 0.00 39.17 2.77
4801 5107 1.822990 AGCCATGTCAATGAGCTTTGG 59.177 47.619 0.00 0.00 37.14 3.28
4802 5108 1.134907 GCCATGTCAATGAGCTTTGGG 60.135 52.381 0.00 0.00 35.67 4.12
4803 5109 2.449464 CCATGTCAATGAGCTTTGGGA 58.551 47.619 0.00 0.00 35.67 4.37
4804 5110 2.426024 CCATGTCAATGAGCTTTGGGAG 59.574 50.000 0.00 0.00 35.67 4.30
4805 5111 2.205022 TGTCAATGAGCTTTGGGAGG 57.795 50.000 0.00 0.00 0.00 4.30
4806 5112 1.425066 TGTCAATGAGCTTTGGGAGGT 59.575 47.619 0.00 0.00 39.22 3.85
4863 5169 4.629251 TCTGATCAATCTCACAGTCTCG 57.371 45.455 0.00 0.00 0.00 4.04
4884 5190 3.730061 CGCAGATGAAGAGGCAAATGAAC 60.730 47.826 0.00 0.00 0.00 3.18
4949 5258 9.478768 TTTACATGTCTAAACTTATGTGTTCGA 57.521 29.630 0.00 0.00 35.55 3.71
4953 5262 8.873830 CATGTCTAAACTTATGTGTTCGAGAAT 58.126 33.333 0.00 0.00 0.00 2.40
4960 5269 0.804364 TGTGTTCGAGAATGCATGGC 59.196 50.000 0.00 0.00 0.00 4.40
4966 5275 2.135139 TCGAGAATGCATGGCGTAATC 58.865 47.619 0.00 0.00 0.00 1.75
4967 5276 2.138320 CGAGAATGCATGGCGTAATCT 58.862 47.619 0.00 0.00 0.00 2.40
4971 5280 1.311859 ATGCATGGCGTAATCTGGTG 58.688 50.000 0.00 0.00 0.00 4.17
4978 5287 1.940613 GGCGTAATCTGGTGTGAATCC 59.059 52.381 0.00 0.00 0.00 3.01
4985 5294 1.142667 TCTGGTGTGAATCCTTGCACA 59.857 47.619 0.00 0.00 42.25 4.57
4988 5297 2.161855 GGTGTGAATCCTTGCACATCA 58.838 47.619 0.00 0.00 45.59 3.07
4989 5298 2.095059 GGTGTGAATCCTTGCACATCAC 60.095 50.000 0.00 8.69 45.59 3.06
4990 5299 1.805943 TGTGAATCCTTGCACATCACG 59.194 47.619 0.00 0.00 42.47 4.35
4991 5300 1.131126 GTGAATCCTTGCACATCACGG 59.869 52.381 0.00 0.00 35.55 4.94
4992 5301 1.271325 TGAATCCTTGCACATCACGGT 60.271 47.619 0.00 0.00 35.71 4.83
4993 5302 1.131126 GAATCCTTGCACATCACGGTG 59.869 52.381 0.56 0.56 41.72 4.94
5012 5321 1.730902 CGGCGTGTCTCTGTCACAG 60.731 63.158 0.00 0.00 35.79 3.66
5023 5332 4.626081 GTCACAGCACCACCGGCT 62.626 66.667 0.00 0.00 43.77 5.52
5031 5340 4.643387 ACCACCGGCTGAGGTTGC 62.643 66.667 0.00 0.00 43.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 109 2.140792 CCCGGGATCCCACAGGTAG 61.141 68.421 30.42 11.91 35.37 3.18
147 148 1.761667 CCTCTCAGCCTCCCTCAGG 60.762 68.421 0.00 0.00 46.82 3.86
207 208 0.451783 CCAAGTAAGCCGCATTGGTC 59.548 55.000 7.96 0.00 41.21 4.02
406 407 4.164796 TGCTCATTCACTCCAGTATCCATT 59.835 41.667 0.00 0.00 0.00 3.16
433 434 0.615850 GTTCCCCAGTGAGCTAAGCT 59.384 55.000 0.00 0.00 43.88 3.74
434 435 0.615850 AGTTCCCCAGTGAGCTAAGC 59.384 55.000 0.00 0.00 0.00 3.09
435 436 1.065854 CCAGTTCCCCAGTGAGCTAAG 60.066 57.143 0.00 0.00 0.00 2.18
436 437 0.984230 CCAGTTCCCCAGTGAGCTAA 59.016 55.000 0.00 0.00 0.00 3.09
437 438 0.178903 ACCAGTTCCCCAGTGAGCTA 60.179 55.000 0.00 0.00 0.00 3.32
438 439 1.462238 ACCAGTTCCCCAGTGAGCT 60.462 57.895 0.00 0.00 0.00 4.09
439 440 1.302832 CACCAGTTCCCCAGTGAGC 60.303 63.158 0.00 0.00 31.79 4.26
440 441 0.987294 ATCACCAGTTCCCCAGTGAG 59.013 55.000 0.00 0.00 42.13 3.51
441 442 0.692476 CATCACCAGTTCCCCAGTGA 59.308 55.000 0.00 0.00 42.95 3.41
442 443 0.692476 TCATCACCAGTTCCCCAGTG 59.308 55.000 0.00 0.00 0.00 3.66
443 444 1.673767 ATCATCACCAGTTCCCCAGT 58.326 50.000 0.00 0.00 0.00 4.00
444 445 2.814805 AATCATCACCAGTTCCCCAG 57.185 50.000 0.00 0.00 0.00 4.45
461 462 6.307800 CAGTTCAGAACACAAACAAACGAAAT 59.692 34.615 15.85 0.00 0.00 2.17
462 463 5.627367 CAGTTCAGAACACAAACAAACGAAA 59.373 36.000 15.85 0.00 0.00 3.46
484 485 9.025041 AGAAAATGGATACCCTAAAAGTTTCAG 57.975 33.333 0.00 0.00 0.00 3.02
631 632 2.160417 GGACACAGCAGCATTTCACTAC 59.840 50.000 0.00 0.00 0.00 2.73
720 727 4.781934 ACTTACCACTGCTTTTCTCTTGT 58.218 39.130 0.00 0.00 0.00 3.16
725 732 5.420739 TGGAAAAACTTACCACTGCTTTTCT 59.579 36.000 0.00 0.00 34.64 2.52
910 917 5.416952 ACTGTTGCTGGAAGGAGATATTTTG 59.583 40.000 0.00 0.00 33.89 2.44
934 942 4.708177 CTTAGCTAATCCTAAGGCTGCAA 58.292 43.478 6.64 0.00 40.23 4.08
955 964 0.833949 GGAAGAATCGGAAGGGAGCT 59.166 55.000 0.00 0.00 0.00 4.09
960 969 1.282157 ACTTGGGGAAGAATCGGAAGG 59.718 52.381 0.00 0.00 0.00 3.46
965 974 3.005791 AGCAAAAACTTGGGGAAGAATCG 59.994 43.478 0.00 0.00 0.00 3.34
972 981 1.039856 GAGCAGCAAAAACTTGGGGA 58.960 50.000 0.00 0.00 0.00 4.81
984 993 3.198417 TGGTCATGAGATAAAGAGCAGCA 59.802 43.478 0.00 0.00 34.03 4.41
985 994 3.559242 GTGGTCATGAGATAAAGAGCAGC 59.441 47.826 0.00 0.00 38.92 5.25
986 995 3.801050 CGTGGTCATGAGATAAAGAGCAG 59.199 47.826 0.00 0.00 38.92 4.24
987 996 3.447229 TCGTGGTCATGAGATAAAGAGCA 59.553 43.478 0.00 0.00 36.30 4.26
988 997 4.046938 TCGTGGTCATGAGATAAAGAGC 57.953 45.455 0.00 0.00 0.00 4.09
989 998 5.836347 TCATCGTGGTCATGAGATAAAGAG 58.164 41.667 0.00 0.00 0.00 2.85
1069 1078 2.495270 GACCAGATGAGAAGTCTGAGCA 59.505 50.000 4.79 0.00 44.57 4.26
1094 1103 1.748879 GCTTCTAATGGGCGCCACA 60.749 57.895 30.85 23.70 35.80 4.17
1095 1104 1.452108 AGCTTCTAATGGGCGCCAC 60.452 57.895 30.85 18.39 35.80 5.01
1110 1119 1.200020 GCTCGGTAATGTTTTGCAGCT 59.800 47.619 0.00 0.00 0.00 4.24
1113 1122 0.109964 GCGCTCGGTAATGTTTTGCA 60.110 50.000 0.00 0.00 0.00 4.08
1153 1162 3.125316 GTCTTAGTGGCAGCACATGTTAC 59.875 47.826 0.00 0.00 0.00 2.50
1208 1217 4.884164 GGTTCCATATCAAGTCAAAGGAGG 59.116 45.833 0.00 0.00 0.00 4.30
1216 1225 7.787725 ATAAGAAACGGTTCCATATCAAGTC 57.212 36.000 10.19 0.00 33.92 3.01
1231 1240 7.112565 GCATCATGCATAACAGAATAAGAAACG 59.887 37.037 4.20 0.00 44.26 3.60
1279 1289 5.633830 TTCCTCTTCAGCTGCAAAATAAG 57.366 39.130 9.47 6.54 0.00 1.73
1282 1292 3.194968 CCATTCCTCTTCAGCTGCAAAAT 59.805 43.478 9.47 0.11 0.00 1.82
1298 1308 2.091541 TGCCGTTTGATCTTCCATTCC 58.908 47.619 0.00 0.00 0.00 3.01
1320 1330 7.256083 GGTTATTACCCGCTTCTCTAATAGGAA 60.256 40.741 0.00 0.00 38.60 3.36
1326 1336 5.364446 TGATGGTTATTACCCGCTTCTCTAA 59.636 40.000 0.00 0.00 44.35 2.10
1377 1391 2.544267 GTCCGCAGCAACCTTCATATAC 59.456 50.000 0.00 0.00 0.00 1.47
1533 1554 8.243426 TCAATCAACAGTAAATCAAGCCAATAC 58.757 33.333 0.00 0.00 0.00 1.89
1538 1559 6.913170 TCTTCAATCAACAGTAAATCAAGCC 58.087 36.000 0.00 0.00 0.00 4.35
1543 1564 7.755591 TGCTCATCTTCAATCAACAGTAAATC 58.244 34.615 0.00 0.00 0.00 2.17
1885 1911 5.334646 GGAACGAAAGGGAGTAATTGTGAAC 60.335 44.000 0.00 0.00 0.00 3.18
1896 1922 8.422566 AGACTTATATTTAGGAACGAAAGGGAG 58.577 37.037 0.00 0.00 36.20 4.30
1897 1923 8.315220 AGACTTATATTTAGGAACGAAAGGGA 57.685 34.615 0.00 0.00 36.20 4.20
1898 1924 8.959705 AAGACTTATATTTAGGAACGAAAGGG 57.040 34.615 0.00 0.00 36.20 3.95
1915 1941 9.944376 TGTAGTGCAATCTCTAAAAAGACTTAT 57.056 29.630 0.00 0.00 0.00 1.73
1916 1942 9.772973 TTGTAGTGCAATCTCTAAAAAGACTTA 57.227 29.630 0.00 0.00 31.07 2.24
1917 1943 8.677148 TTGTAGTGCAATCTCTAAAAAGACTT 57.323 30.769 0.00 0.00 31.07 3.01
1918 1944 8.560374 GTTTGTAGTGCAATCTCTAAAAAGACT 58.440 33.333 0.00 0.00 36.89 3.24
1919 1945 8.560374 AGTTTGTAGTGCAATCTCTAAAAAGAC 58.440 33.333 0.00 0.00 36.89 3.01
1920 1946 8.677148 AGTTTGTAGTGCAATCTCTAAAAAGA 57.323 30.769 0.00 0.00 36.89 2.52
1921 1947 9.813080 GTAGTTTGTAGTGCAATCTCTAAAAAG 57.187 33.333 7.69 0.00 37.97 2.27
1922 1948 9.332502 TGTAGTTTGTAGTGCAATCTCTAAAAA 57.667 29.630 7.69 0.00 37.97 1.94
1923 1949 8.896320 TGTAGTTTGTAGTGCAATCTCTAAAA 57.104 30.769 7.69 0.00 37.97 1.52
1925 1951 9.582431 GTATGTAGTTTGTAGTGCAATCTCTAA 57.418 33.333 7.69 0.00 37.97 2.10
1926 1952 7.913821 CGTATGTAGTTTGTAGTGCAATCTCTA 59.086 37.037 7.69 3.30 37.97 2.43
1927 1953 6.752351 CGTATGTAGTTTGTAGTGCAATCTCT 59.248 38.462 7.69 4.11 37.97 3.10
1928 1954 6.019801 CCGTATGTAGTTTGTAGTGCAATCTC 60.020 42.308 7.69 2.52 37.97 2.75
1929 1955 5.810587 CCGTATGTAGTTTGTAGTGCAATCT 59.189 40.000 9.16 9.16 39.60 2.40
1930 1956 5.808540 TCCGTATGTAGTTTGTAGTGCAATC 59.191 40.000 0.00 0.00 36.89 2.67
1931 1957 5.726397 TCCGTATGTAGTTTGTAGTGCAAT 58.274 37.500 0.00 0.00 36.89 3.56
1932 1958 5.136816 TCCGTATGTAGTTTGTAGTGCAA 57.863 39.130 0.00 0.00 34.87 4.08
1933 1959 4.787260 TCCGTATGTAGTTTGTAGTGCA 57.213 40.909 0.00 0.00 0.00 4.57
1934 1960 5.107133 ACATCCGTATGTAGTTTGTAGTGC 58.893 41.667 0.00 0.00 44.66 4.40
1976 2002 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1977 2003 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1978 2004 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1979 2005 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1980 2006 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1981 2007 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1982 2008 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1983 2009 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1984 2010 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1985 2011 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1986 2012 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1987 2013 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1988 2014 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1989 2015 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
1990 2016 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1991 2017 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1992 2018 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
1993 2019 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
1994 2020 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
1995 2021 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
1996 2022 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
2008 2034 8.324191 AGTCTTTGTAGAGATTCCAATATGGA 57.676 34.615 0.00 0.00 46.61 3.41
2009 2035 8.970859 AAGTCTTTGTAGAGATTCCAATATGG 57.029 34.615 0.00 0.00 39.43 2.74
2025 2051 9.853177 CCTCCATTCCTAAATATAAGTCTTTGT 57.147 33.333 0.00 0.00 0.00 2.83
2026 2052 9.289782 CCCTCCATTCCTAAATATAAGTCTTTG 57.710 37.037 0.00 0.00 0.00 2.77
2027 2053 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
2028 2054 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
2029 2055 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
2030 2056 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
2031 2057 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
2037 2063 9.860393 AGTTATATACTCCCTCCATTCCTAAAT 57.140 33.333 0.00 0.00 28.23 1.40
2038 2064 9.101325 CAGTTATATACTCCCTCCATTCCTAAA 57.899 37.037 0.00 0.00 33.85 1.85
2039 2065 7.678598 CCAGTTATATACTCCCTCCATTCCTAA 59.321 40.741 0.00 0.00 33.85 2.69
2040 2066 7.020270 TCCAGTTATATACTCCCTCCATTCCTA 59.980 40.741 0.00 0.00 33.85 2.94
2041 2067 6.026186 CCAGTTATATACTCCCTCCATTCCT 58.974 44.000 0.00 0.00 33.85 3.36
2042 2068 6.023603 TCCAGTTATATACTCCCTCCATTCC 58.976 44.000 0.00 0.00 33.85 3.01
2043 2069 6.954684 TCTCCAGTTATATACTCCCTCCATTC 59.045 42.308 0.00 0.00 33.85 2.67
2044 2070 6.875469 TCTCCAGTTATATACTCCCTCCATT 58.125 40.000 0.00 0.00 33.85 3.16
2045 2071 6.485388 TCTCCAGTTATATACTCCCTCCAT 57.515 41.667 0.00 0.00 33.85 3.41
2046 2072 5.942977 TCTCCAGTTATATACTCCCTCCA 57.057 43.478 0.00 0.00 33.85 3.86
2127 2153 5.012893 ACTGTTAGCCGTTTAGGTACTACT 58.987 41.667 0.00 0.00 42.67 2.57
2128 2154 5.098211 CACTGTTAGCCGTTTAGGTACTAC 58.902 45.833 0.00 0.00 42.67 2.73
2129 2155 5.009631 TCACTGTTAGCCGTTTAGGTACTA 58.990 41.667 0.00 0.00 43.70 1.82
2130 2156 3.828451 TCACTGTTAGCCGTTTAGGTACT 59.172 43.478 0.00 0.00 43.70 2.73
2131 2157 4.178545 TCACTGTTAGCCGTTTAGGTAC 57.821 45.455 0.00 0.00 43.70 3.34
2132 2158 4.463539 TGATCACTGTTAGCCGTTTAGGTA 59.536 41.667 0.00 0.00 43.70 3.08
2432 2463 6.019779 ACACAGCAAACAGAAGTACAAAAA 57.980 33.333 0.00 0.00 0.00 1.94
2488 2519 3.006003 CCTGCACAAATATGGCATATGCA 59.994 43.478 28.07 24.27 44.36 3.96
2500 2531 1.317613 TCTTCAACGCCTGCACAAAT 58.682 45.000 0.00 0.00 0.00 2.32
2634 2820 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
2635 2821 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
2636 2822 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
2637 2823 3.608707 CGACGAGTAATATGGAACGGAGG 60.609 52.174 0.00 0.00 0.00 4.30
2638 2824 3.003068 ACGACGAGTAATATGGAACGGAG 59.997 47.826 0.00 0.00 0.00 4.63
2639 2825 2.945008 ACGACGAGTAATATGGAACGGA 59.055 45.455 0.00 0.00 0.00 4.69
2640 2826 3.040795 CACGACGAGTAATATGGAACGG 58.959 50.000 0.00 0.00 0.00 4.44
2641 2827 3.040795 CCACGACGAGTAATATGGAACG 58.959 50.000 0.00 0.00 0.00 3.95
2642 2828 4.037858 ACCACGACGAGTAATATGGAAC 57.962 45.455 0.00 0.00 0.00 3.62
2643 2829 4.724074 AACCACGACGAGTAATATGGAA 57.276 40.909 0.00 0.00 0.00 3.53
2644 2830 4.724074 AAACCACGACGAGTAATATGGA 57.276 40.909 0.00 0.00 0.00 3.41
2645 2831 6.267817 TCTAAAACCACGACGAGTAATATGG 58.732 40.000 0.00 0.00 0.00 2.74
2646 2832 7.861372 AGATCTAAAACCACGACGAGTAATATG 59.139 37.037 0.00 0.00 0.00 1.78
2647 2833 7.938715 AGATCTAAAACCACGACGAGTAATAT 58.061 34.615 0.00 0.00 0.00 1.28
2648 2834 7.325660 AGATCTAAAACCACGACGAGTAATA 57.674 36.000 0.00 0.00 0.00 0.98
2649 2835 6.205101 AGATCTAAAACCACGACGAGTAAT 57.795 37.500 0.00 0.00 0.00 1.89
2650 2836 5.633830 AGATCTAAAACCACGACGAGTAA 57.366 39.130 0.00 0.00 0.00 2.24
2651 2837 6.741992 TTAGATCTAAAACCACGACGAGTA 57.258 37.500 12.87 0.00 0.00 2.59
2652 2838 5.633830 TTAGATCTAAAACCACGACGAGT 57.366 39.130 12.87 0.00 0.00 4.18
2653 2839 6.939551 TTTTAGATCTAAAACCACGACGAG 57.060 37.500 28.75 0.00 39.34 4.18
2663 2849 9.545105 TTACTTGTCGTGGTTTTAGATCTAAAA 57.455 29.630 28.75 28.75 41.23 1.52
2664 2850 9.715121 ATTACTTGTCGTGGTTTTAGATCTAAA 57.285 29.630 21.46 21.46 33.63 1.85
2667 2853 9.314321 CATATTACTTGTCGTGGTTTTAGATCT 57.686 33.333 0.00 0.00 0.00 2.75
2668 2854 8.548721 CCATATTACTTGTCGTGGTTTTAGATC 58.451 37.037 0.00 0.00 0.00 2.75
2669 2855 8.262227 TCCATATTACTTGTCGTGGTTTTAGAT 58.738 33.333 0.00 0.00 0.00 1.98
2670 2856 7.613585 TCCATATTACTTGTCGTGGTTTTAGA 58.386 34.615 0.00 0.00 0.00 2.10
2671 2857 7.837202 TCCATATTACTTGTCGTGGTTTTAG 57.163 36.000 0.00 0.00 0.00 1.85
2672 2858 7.660617 TGTTCCATATTACTTGTCGTGGTTTTA 59.339 33.333 0.00 0.00 0.00 1.52
2673 2859 6.487331 TGTTCCATATTACTTGTCGTGGTTTT 59.513 34.615 0.00 0.00 0.00 2.43
2674 2860 5.998981 TGTTCCATATTACTTGTCGTGGTTT 59.001 36.000 0.00 0.00 0.00 3.27
2675 2861 5.553123 TGTTCCATATTACTTGTCGTGGTT 58.447 37.500 0.00 0.00 0.00 3.67
2676 2862 5.046878 TCTGTTCCATATTACTTGTCGTGGT 60.047 40.000 0.00 0.00 0.00 4.16
2677 2863 5.416083 TCTGTTCCATATTACTTGTCGTGG 58.584 41.667 0.00 0.00 0.00 4.94
2678 2864 5.520288 CCTCTGTTCCATATTACTTGTCGTG 59.480 44.000 0.00 0.00 0.00 4.35
2679 2865 5.395324 CCCTCTGTTCCATATTACTTGTCGT 60.395 44.000 0.00 0.00 0.00 4.34
2680 2866 5.050490 CCCTCTGTTCCATATTACTTGTCG 58.950 45.833 0.00 0.00 0.00 4.35
2681 2867 6.127026 ACTCCCTCTGTTCCATATTACTTGTC 60.127 42.308 0.00 0.00 0.00 3.18
2682 2868 5.726793 ACTCCCTCTGTTCCATATTACTTGT 59.273 40.000 0.00 0.00 0.00 3.16
2683 2869 6.240549 ACTCCCTCTGTTCCATATTACTTG 57.759 41.667 0.00 0.00 0.00 3.16
2684 2870 7.133483 ACTACTCCCTCTGTTCCATATTACTT 58.867 38.462 0.00 0.00 0.00 2.24
2685 2871 6.684538 ACTACTCCCTCTGTTCCATATTACT 58.315 40.000 0.00 0.00 0.00 2.24
2686 2872 6.980416 ACTACTCCCTCTGTTCCATATTAC 57.020 41.667 0.00 0.00 0.00 1.89
2688 2874 9.845214 ATAATACTACTCCCTCTGTTCCATATT 57.155 33.333 0.00 0.00 0.00 1.28
2689 2875 9.845214 AATAATACTACTCCCTCTGTTCCATAT 57.155 33.333 0.00 0.00 0.00 1.78
2690 2876 9.670442 AAATAATACTACTCCCTCTGTTCCATA 57.330 33.333 0.00 0.00 0.00 2.74
2691 2877 8.568617 AAATAATACTACTCCCTCTGTTCCAT 57.431 34.615 0.00 0.00 0.00 3.41
2692 2878 7.989947 AAATAATACTACTCCCTCTGTTCCA 57.010 36.000 0.00 0.00 0.00 3.53
2693 2879 9.145442 AGTAAATAATACTACTCCCTCTGTTCC 57.855 37.037 0.00 0.00 0.00 3.62
2694 2880 9.968870 CAGTAAATAATACTACTCCCTCTGTTC 57.031 37.037 0.00 0.00 0.00 3.18
2695 2881 8.422566 GCAGTAAATAATACTACTCCCTCTGTT 58.577 37.037 0.00 0.00 0.00 3.16
2696 2882 7.785506 AGCAGTAAATAATACTACTCCCTCTGT 59.214 37.037 0.00 0.00 0.00 3.41
2697 2883 8.184304 AGCAGTAAATAATACTACTCCCTCTG 57.816 38.462 0.00 0.00 0.00 3.35
2698 2884 9.878737 TTAGCAGTAAATAATACTACTCCCTCT 57.121 33.333 0.00 0.00 0.00 3.69
2718 2904 8.087750 TCCATGGAAATTAAACAAGTTTAGCAG 58.912 33.333 13.46 0.00 36.52 4.24
2733 2919 3.023832 GGACCGACAATCCATGGAAATT 58.976 45.455 20.67 6.66 36.15 1.82
2762 2948 2.880890 AGTTCAGCACCTTCATGACAAC 59.119 45.455 0.00 0.00 0.00 3.32
2819 3005 6.567687 TTCACGGAAGATGCAAGAAATTTA 57.432 33.333 0.00 0.00 0.00 1.40
2917 3107 5.974751 GCGAAACAAATTTCCACTAACAGAA 59.025 36.000 0.00 0.00 41.12 3.02
2928 3118 8.545749 AATGTTCAAATTGCGAAACAAATTTC 57.454 26.923 3.43 0.00 42.86 2.17
2939 3129 9.132521 AGAAATAAAGAGAATGTTCAAATTGCG 57.867 29.630 0.00 0.00 0.00 4.85
2960 3150 6.496911 AGCTAAACAAAACCCATGGTAGAAAT 59.503 34.615 11.73 0.00 33.12 2.17
3069 3262 9.881649 TCTGCTTAATATATCACAGAATCATCC 57.118 33.333 0.00 0.00 31.60 3.51
3170 3366 1.351017 CTCCCACTACTTGGCCAAGAA 59.649 52.381 44.50 21.52 45.37 2.52
3224 3420 7.884877 TGAATTCTACCACTGAGATTTGAACAT 59.115 33.333 7.05 0.00 0.00 2.71
3363 3600 2.169832 AACCTATCATTGGATCGCCG 57.830 50.000 0.00 0.00 36.79 6.46
3414 3651 1.199624 CAAGGCGAAAACACAACTGC 58.800 50.000 0.00 0.00 0.00 4.40
3427 3664 2.699954 ACACAGAGGATAAACAAGGCG 58.300 47.619 0.00 0.00 0.00 5.52
3440 3677 3.059884 ACAATCGCAACAGTACACAGAG 58.940 45.455 0.00 0.00 0.00 3.35
3442 3679 2.799978 TGACAATCGCAACAGTACACAG 59.200 45.455 0.00 0.00 0.00 3.66
3654 3921 6.435430 AGCAAATGCACGATACTGAATTTA 57.565 33.333 8.28 0.00 45.16 1.40
3722 3991 0.461870 TGTGCAGTACGGCATGGATC 60.462 55.000 23.39 10.85 46.92 3.36
3767 4036 6.856135 AACAACCACTTAACAAGTACTAGC 57.144 37.500 0.00 0.00 40.46 3.42
3797 4066 6.706716 GGGAGAACAAGCATAAACTATCTACC 59.293 42.308 0.00 0.00 30.00 3.18
3819 4089 3.114606 TGAGAGCAATCCAGTAATGGGA 58.885 45.455 9.77 0.00 39.14 4.37
3849 4119 6.406896 GCAATACATTTATACGTCAACACACG 59.593 38.462 0.00 0.00 45.65 4.49
3850 4120 6.685403 GGCAATACATTTATACGTCAACACAC 59.315 38.462 0.00 0.00 0.00 3.82
3851 4121 6.596106 AGGCAATACATTTATACGTCAACACA 59.404 34.615 0.00 0.00 0.00 3.72
3852 4122 7.011828 AGGCAATACATTTATACGTCAACAC 57.988 36.000 0.00 0.00 0.00 3.32
3853 4123 7.982919 ACTAGGCAATACATTTATACGTCAACA 59.017 33.333 0.00 0.00 0.00 3.33
3854 4124 8.361592 ACTAGGCAATACATTTATACGTCAAC 57.638 34.615 0.00 0.00 0.00 3.18
3855 4125 8.418662 AGACTAGGCAATACATTTATACGTCAA 58.581 33.333 0.00 0.00 0.00 3.18
3856 4126 7.948357 AGACTAGGCAATACATTTATACGTCA 58.052 34.615 0.00 0.00 0.00 4.35
3857 4127 8.298140 AGAGACTAGGCAATACATTTATACGTC 58.702 37.037 0.00 0.00 0.00 4.34
3858 4128 8.179509 AGAGACTAGGCAATACATTTATACGT 57.820 34.615 0.00 0.00 0.00 3.57
3859 4129 9.130312 GAAGAGACTAGGCAATACATTTATACG 57.870 37.037 0.00 0.00 0.00 3.06
3860 4130 9.425577 GGAAGAGACTAGGCAATACATTTATAC 57.574 37.037 0.00 0.00 0.00 1.47
3861 4131 9.154632 TGGAAGAGACTAGGCAATACATTTATA 57.845 33.333 0.00 0.00 0.00 0.98
3862 4132 8.034313 TGGAAGAGACTAGGCAATACATTTAT 57.966 34.615 0.00 0.00 0.00 1.40
3863 4133 7.432148 TGGAAGAGACTAGGCAATACATTTA 57.568 36.000 0.00 0.00 0.00 1.40
3864 4134 6.313519 TGGAAGAGACTAGGCAATACATTT 57.686 37.500 0.00 0.00 0.00 2.32
3865 4135 5.957771 TGGAAGAGACTAGGCAATACATT 57.042 39.130 0.00 0.00 0.00 2.71
3866 4136 5.604231 TGATGGAAGAGACTAGGCAATACAT 59.396 40.000 0.00 0.00 0.00 2.29
3867 4137 4.962362 TGATGGAAGAGACTAGGCAATACA 59.038 41.667 0.00 0.00 0.00 2.29
3868 4138 5.303078 TCTGATGGAAGAGACTAGGCAATAC 59.697 44.000 0.00 0.00 0.00 1.89
3869 4139 5.458595 TCTGATGGAAGAGACTAGGCAATA 58.541 41.667 0.00 0.00 0.00 1.90
3870 4140 4.293494 TCTGATGGAAGAGACTAGGCAAT 58.707 43.478 0.00 0.00 0.00 3.56
3871 4141 3.713003 TCTGATGGAAGAGACTAGGCAA 58.287 45.455 0.00 0.00 0.00 4.52
3872 4142 3.388552 TCTGATGGAAGAGACTAGGCA 57.611 47.619 0.00 0.00 0.00 4.75
3873 4143 3.057596 CGATCTGATGGAAGAGACTAGGC 60.058 52.174 0.00 0.00 0.00 3.93
3874 4144 3.505680 CCGATCTGATGGAAGAGACTAGG 59.494 52.174 0.83 0.00 0.00 3.02
3875 4145 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
3876 4146 4.138290 GACCGATCTGATGGAAGAGACTA 58.862 47.826 11.46 0.00 0.00 2.59
3877 4147 2.955660 GACCGATCTGATGGAAGAGACT 59.044 50.000 11.46 0.00 0.00 3.24
3878 4148 2.955660 AGACCGATCTGATGGAAGAGAC 59.044 50.000 11.46 0.00 32.29 3.36
3879 4149 3.304911 AGACCGATCTGATGGAAGAGA 57.695 47.619 11.46 0.00 32.29 3.10
3880 4150 4.399004 AAAGACCGATCTGATGGAAGAG 57.601 45.455 11.46 0.00 34.48 2.85
3881 4151 4.507710 CAAAAGACCGATCTGATGGAAGA 58.492 43.478 11.46 0.00 34.48 2.87
3882 4152 3.624861 CCAAAAGACCGATCTGATGGAAG 59.375 47.826 5.34 0.00 34.48 3.46
3883 4153 3.609853 CCAAAAGACCGATCTGATGGAA 58.390 45.455 5.34 0.00 34.48 3.53
3884 4154 2.092968 CCCAAAAGACCGATCTGATGGA 60.093 50.000 11.82 0.00 34.48 3.41
3885 4155 2.292267 CCCAAAAGACCGATCTGATGG 58.708 52.381 4.42 4.42 34.48 3.51
3886 4156 2.991250 ACCCAAAAGACCGATCTGATG 58.009 47.619 0.00 0.00 34.48 3.07
3887 4157 3.009033 TGAACCCAAAAGACCGATCTGAT 59.991 43.478 0.00 0.00 34.48 2.90
3888 4158 2.370519 TGAACCCAAAAGACCGATCTGA 59.629 45.455 0.00 0.00 34.48 3.27
3889 4159 2.778299 TGAACCCAAAAGACCGATCTG 58.222 47.619 0.00 0.00 34.48 2.90
3890 4160 3.721087 ATGAACCCAAAAGACCGATCT 57.279 42.857 0.00 0.00 36.42 2.75
3891 4161 3.119495 CCAATGAACCCAAAAGACCGATC 60.119 47.826 0.00 0.00 0.00 3.69
3892 4162 2.825532 CCAATGAACCCAAAAGACCGAT 59.174 45.455 0.00 0.00 0.00 4.18
3893 4163 2.235016 CCAATGAACCCAAAAGACCGA 58.765 47.619 0.00 0.00 0.00 4.69
3894 4164 1.336795 GCCAATGAACCCAAAAGACCG 60.337 52.381 0.00 0.00 0.00 4.79
3895 4165 1.970640 AGCCAATGAACCCAAAAGACC 59.029 47.619 0.00 0.00 0.00 3.85
3896 4166 4.079253 TCTAGCCAATGAACCCAAAAGAC 58.921 43.478 0.00 0.00 0.00 3.01
3897 4167 4.335416 CTCTAGCCAATGAACCCAAAAGA 58.665 43.478 0.00 0.00 0.00 2.52
3898 4168 3.119352 GCTCTAGCCAATGAACCCAAAAG 60.119 47.826 0.00 0.00 34.31 2.27
3899 4169 2.825532 GCTCTAGCCAATGAACCCAAAA 59.174 45.455 0.00 0.00 34.31 2.44
3900 4170 2.224992 TGCTCTAGCCAATGAACCCAAA 60.225 45.455 0.00 0.00 41.18 3.28
3901 4171 1.354031 TGCTCTAGCCAATGAACCCAA 59.646 47.619 0.00 0.00 41.18 4.12
3902 4172 0.991146 TGCTCTAGCCAATGAACCCA 59.009 50.000 0.00 0.00 41.18 4.51
3903 4173 1.952296 CATGCTCTAGCCAATGAACCC 59.048 52.381 0.00 0.00 41.18 4.11
3904 4174 1.336125 GCATGCTCTAGCCAATGAACC 59.664 52.381 11.37 0.00 41.18 3.62
3905 4175 2.019249 TGCATGCTCTAGCCAATGAAC 58.981 47.619 20.33 0.00 41.18 3.18
3906 4176 2.019249 GTGCATGCTCTAGCCAATGAA 58.981 47.619 20.33 0.00 41.18 2.57
3907 4177 1.065272 TGTGCATGCTCTAGCCAATGA 60.065 47.619 20.33 0.00 41.18 2.57
3908 4178 1.385528 TGTGCATGCTCTAGCCAATG 58.614 50.000 20.33 0.00 41.18 2.82
3909 4179 2.158652 AGATGTGCATGCTCTAGCCAAT 60.159 45.455 20.33 3.46 41.18 3.16
3910 4180 1.211212 AGATGTGCATGCTCTAGCCAA 59.789 47.619 20.33 0.00 41.18 4.52
3911 4181 0.835276 AGATGTGCATGCTCTAGCCA 59.165 50.000 20.33 6.26 41.18 4.75
3912 4182 2.224137 TGTAGATGTGCATGCTCTAGCC 60.224 50.000 20.33 7.53 41.18 3.93
3913 4183 3.103447 TGTAGATGTGCATGCTCTAGC 57.897 47.619 20.33 12.01 42.50 3.42
3914 4184 3.995048 CCATGTAGATGTGCATGCTCTAG 59.005 47.826 20.33 6.28 43.45 2.43
3915 4185 3.389002 ACCATGTAGATGTGCATGCTCTA 59.611 43.478 20.33 14.61 43.45 2.43
3916 4186 2.172082 ACCATGTAGATGTGCATGCTCT 59.828 45.455 20.33 15.68 43.45 4.09
3917 4187 2.569059 ACCATGTAGATGTGCATGCTC 58.431 47.619 20.33 16.39 43.45 4.26
3918 4188 2.723322 ACCATGTAGATGTGCATGCT 57.277 45.000 20.33 0.00 43.45 3.79
3919 4189 4.321718 AGATACCATGTAGATGTGCATGC 58.678 43.478 11.82 11.82 43.45 4.06
3920 4190 5.993441 TCAAGATACCATGTAGATGTGCATG 59.007 40.000 13.12 13.12 44.17 4.06
3921 4191 6.178607 TCAAGATACCATGTAGATGTGCAT 57.821 37.500 0.00 0.00 0.00 3.96
3922 4192 5.604565 CTCAAGATACCATGTAGATGTGCA 58.395 41.667 0.00 0.00 0.00 4.57
3923 4193 4.450419 GCTCAAGATACCATGTAGATGTGC 59.550 45.833 0.00 0.00 0.00 4.57
3924 4194 4.993584 GGCTCAAGATACCATGTAGATGTG 59.006 45.833 0.00 0.00 0.00 3.21
3925 4195 4.655649 TGGCTCAAGATACCATGTAGATGT 59.344 41.667 0.00 0.00 0.00 3.06
3926 4196 5.219343 TGGCTCAAGATACCATGTAGATG 57.781 43.478 0.00 0.00 0.00 2.90
3927 4197 5.604231 TCTTGGCTCAAGATACCATGTAGAT 59.396 40.000 12.03 0.00 44.27 1.98
3928 4198 4.962362 TCTTGGCTCAAGATACCATGTAGA 59.038 41.667 12.03 0.00 44.27 2.59
3929 4199 5.282055 TCTTGGCTCAAGATACCATGTAG 57.718 43.478 12.03 0.00 44.27 2.74
3939 4209 2.847327 CAAGACCTCTTGGCTCAAGA 57.153 50.000 14.43 14.43 46.50 3.02
3956 4226 2.217038 AGCCGGGTCTTGAGCTCAA 61.217 57.895 26.87 26.87 0.00 3.02
3957 4227 2.604686 AGCCGGGTCTTGAGCTCA 60.605 61.111 13.74 13.74 0.00 4.26
3958 4228 2.125350 CAGCCGGGTCTTGAGCTC 60.125 66.667 1.27 6.82 31.93 4.09
3959 4229 3.710722 CCAGCCGGGTCTTGAGCT 61.711 66.667 1.27 0.00 35.52 4.09
3968 4238 0.823460 ATTTAATTGCACCAGCCGGG 59.177 50.000 2.18 0.00 41.13 5.73
3969 4239 2.270047 CAATTTAATTGCACCAGCCGG 58.730 47.619 4.66 0.00 41.13 6.13
3979 4249 4.091800 CGAAAGTGGGCTGCAATTTAATTG 59.908 41.667 12.84 12.84 43.06 2.32
3980 4250 4.244862 CGAAAGTGGGCTGCAATTTAATT 58.755 39.130 0.50 0.00 0.00 1.40
3981 4251 3.368323 CCGAAAGTGGGCTGCAATTTAAT 60.368 43.478 0.50 0.00 0.00 1.40
3982 4252 2.029470 CCGAAAGTGGGCTGCAATTTAA 60.029 45.455 0.50 0.00 0.00 1.52
3983 4253 1.543802 CCGAAAGTGGGCTGCAATTTA 59.456 47.619 0.50 0.00 0.00 1.40
3984 4254 0.318120 CCGAAAGTGGGCTGCAATTT 59.682 50.000 0.50 0.00 0.00 1.82
3985 4255 0.827507 ACCGAAAGTGGGCTGCAATT 60.828 50.000 0.50 0.00 0.00 2.32
3986 4256 1.228552 ACCGAAAGTGGGCTGCAAT 60.229 52.632 0.50 0.00 0.00 3.56
3987 4257 1.896660 GACCGAAAGTGGGCTGCAA 60.897 57.895 0.50 0.00 32.64 4.08
3988 4258 2.281484 GACCGAAAGTGGGCTGCA 60.281 61.111 0.50 0.00 32.64 4.41
3989 4259 3.056328 GGACCGAAAGTGGGCTGC 61.056 66.667 0.00 0.00 37.14 5.25
3990 4260 1.966451 GTGGACCGAAAGTGGGCTG 60.966 63.158 0.00 0.00 37.14 4.85
3991 4261 2.430367 GTGGACCGAAAGTGGGCT 59.570 61.111 0.00 0.00 37.14 5.19
3992 4262 3.047877 CGTGGACCGAAAGTGGGC 61.048 66.667 0.00 0.00 39.56 5.36
3993 4263 0.816421 AAACGTGGACCGAAAGTGGG 60.816 55.000 0.00 0.00 40.70 4.61
3994 4264 1.868469 TAAACGTGGACCGAAAGTGG 58.132 50.000 0.00 0.00 40.70 4.00
3995 4265 2.803956 ACATAAACGTGGACCGAAAGTG 59.196 45.455 0.00 0.00 40.70 3.16
3996 4266 2.803956 CACATAAACGTGGACCGAAAGT 59.196 45.455 0.00 0.00 40.70 2.66
3997 4267 2.803956 ACACATAAACGTGGACCGAAAG 59.196 45.455 0.00 0.00 41.38 2.62
3998 4268 2.836262 ACACATAAACGTGGACCGAAA 58.164 42.857 0.00 0.00 41.38 3.46
3999 4269 2.529780 ACACATAAACGTGGACCGAA 57.470 45.000 0.00 0.00 41.38 4.30
4000 4270 2.529780 AACACATAAACGTGGACCGA 57.470 45.000 0.00 0.00 41.38 4.69
4001 4271 3.612472 AAAACACATAAACGTGGACCG 57.388 42.857 0.00 0.00 41.38 4.79
4002 4272 4.275443 TGGTAAAACACATAAACGTGGACC 59.725 41.667 0.00 0.00 41.38 4.46
4003 4273 5.007921 AGTGGTAAAACACATAAACGTGGAC 59.992 40.000 0.28 0.00 43.72 4.02
4004 4274 5.007823 CAGTGGTAAAACACATAAACGTGGA 59.992 40.000 0.28 0.00 43.72 4.02
4005 4275 5.007823 TCAGTGGTAAAACACATAAACGTGG 59.992 40.000 0.28 0.00 43.72 4.94
4006 4276 6.018588 TCTCAGTGGTAAAACACATAAACGTG 60.019 38.462 0.28 0.00 43.72 4.49
4007 4277 6.050432 TCTCAGTGGTAAAACACATAAACGT 58.950 36.000 0.28 0.00 43.72 3.99
4008 4278 6.533819 TCTCAGTGGTAAAACACATAAACG 57.466 37.500 0.28 0.00 43.72 3.60
4021 4291 7.290014 TGGAGCAATATCTAAATCTCAGTGGTA 59.710 37.037 0.00 0.00 0.00 3.25
4026 4296 6.534436 CGGATGGAGCAATATCTAAATCTCAG 59.466 42.308 0.00 0.00 0.00 3.35
4042 4312 3.694566 ACTTATTTTGGAACGGATGGAGC 59.305 43.478 0.00 0.00 0.00 4.70
4047 4317 4.153475 CACGACACTTATTTTGGAACGGAT 59.847 41.667 0.00 0.00 0.00 4.18
4058 4328 5.471116 GGGAACTAAAACCACGACACTTATT 59.529 40.000 0.00 0.00 0.00 1.40
4059 4329 4.999311 GGGAACTAAAACCACGACACTTAT 59.001 41.667 0.00 0.00 0.00 1.73
4060 4330 4.141756 TGGGAACTAAAACCACGACACTTA 60.142 41.667 0.00 0.00 0.00 2.24
4063 4333 2.546789 CTGGGAACTAAAACCACGACAC 59.453 50.000 0.00 0.00 0.00 3.67
4065 4335 2.148768 CCTGGGAACTAAAACCACGAC 58.851 52.381 0.00 0.00 0.00 4.34
4066 4336 1.770061 ACCTGGGAACTAAAACCACGA 59.230 47.619 0.00 0.00 0.00 4.35
4067 4337 2.265589 ACCTGGGAACTAAAACCACG 57.734 50.000 0.00 0.00 0.00 4.94
4068 4338 2.626266 CCAACCTGGGAACTAAAACCAC 59.374 50.000 0.00 0.00 32.67 4.16
4069 4339 2.245287 ACCAACCTGGGAACTAAAACCA 59.755 45.455 0.00 0.00 43.37 3.67
4070 4340 2.953453 ACCAACCTGGGAACTAAAACC 58.047 47.619 0.00 0.00 43.37 3.27
4071 4341 6.265876 TGATTTACCAACCTGGGAACTAAAAC 59.734 38.462 0.00 0.00 40.83 2.43
4073 4343 5.771165 GTGATTTACCAACCTGGGAACTAAA 59.229 40.000 0.00 0.00 40.83 1.85
4074 4344 5.163077 TGTGATTTACCAACCTGGGAACTAA 60.163 40.000 0.00 0.00 40.83 2.24
4075 4345 4.351407 TGTGATTTACCAACCTGGGAACTA 59.649 41.667 0.00 0.00 40.83 2.24
4077 4347 3.492337 TGTGATTTACCAACCTGGGAAC 58.508 45.455 0.00 0.00 40.83 3.62
4080 4350 4.526262 TCAAATGTGATTTACCAACCTGGG 59.474 41.667 0.00 0.00 43.37 4.45
4269 4571 5.717038 AGAAAAATGCCGTTTTGTTCTTG 57.283 34.783 0.00 0.00 39.86 3.02
4275 4580 7.463469 ACTTCTAAAGAAAAATGCCGTTTTG 57.537 32.000 0.00 0.00 39.86 2.44
4302 4607 0.949397 CCACGCAGAGCAATGCATAT 59.051 50.000 8.35 0.00 46.87 1.78
4303 4608 0.107752 TCCACGCAGAGCAATGCATA 60.108 50.000 8.35 0.00 46.87 3.14
4304 4609 1.377594 TCCACGCAGAGCAATGCAT 60.378 52.632 8.35 0.00 46.87 3.96
4305 4610 2.032376 TCCACGCAGAGCAATGCA 59.968 55.556 8.35 0.00 46.87 3.96
4332 4637 2.806244 ACATCGGTGCTCACAAGTTTAC 59.194 45.455 0.00 0.00 0.00 2.01
4363 4668 2.398498 CCAGAGTCGAAGCATAATCGG 58.602 52.381 0.00 0.00 40.59 4.18
4405 4711 1.192146 AGCCGTTTAGGACCAGCAGA 61.192 55.000 0.00 0.00 45.00 4.26
4453 4759 3.334583 TCCTTGAACCATGTGTAGAGC 57.665 47.619 0.00 0.00 0.00 4.09
4483 4789 5.012458 TGCTCAATCTTCTTCTCCTTCAGAA 59.988 40.000 0.00 0.00 38.95 3.02
4558 4864 4.158394 ACTCATCACAAACAAACTGCAGTT 59.842 37.500 26.36 26.36 40.50 3.16
4561 4867 4.082300 ACAACTCATCACAAACAAACTGCA 60.082 37.500 0.00 0.00 0.00 4.41
4570 4876 5.630061 CGCATCATTACAACTCATCACAAA 58.370 37.500 0.00 0.00 0.00 2.83
4571 4877 4.437255 GCGCATCATTACAACTCATCACAA 60.437 41.667 0.30 0.00 0.00 3.33
4572 4878 3.063861 GCGCATCATTACAACTCATCACA 59.936 43.478 0.30 0.00 0.00 3.58
4573 4879 3.611517 GCGCATCATTACAACTCATCAC 58.388 45.455 0.30 0.00 0.00 3.06
4574 4880 2.284952 CGCGCATCATTACAACTCATCA 59.715 45.455 8.75 0.00 0.00 3.07
4685 4991 5.829924 AGTTCAAGTGTTTGACATCCAAGAT 59.170 36.000 0.00 0.00 42.79 2.40
4689 4995 5.008613 GCTAAGTTCAAGTGTTTGACATCCA 59.991 40.000 0.00 0.00 42.79 3.41
4697 5003 4.576463 CAGTGAGGCTAAGTTCAAGTGTTT 59.424 41.667 0.00 0.00 0.00 2.83
4713 5019 4.037208 AGCTCAATTCAAACAACAGTGAGG 59.963 41.667 0.00 0.00 33.28 3.86
4718 5024 3.734231 CAGCAGCTCAATTCAAACAACAG 59.266 43.478 0.00 0.00 0.00 3.16
4780 5086 2.159282 CCAAAGCTCATTGACATGGCTC 60.159 50.000 0.00 0.00 36.47 4.70
4785 5091 2.042162 ACCTCCCAAAGCTCATTGACAT 59.958 45.455 0.00 0.00 31.84 3.06
4789 5095 1.467920 GGACCTCCCAAAGCTCATTG 58.532 55.000 0.00 0.00 34.14 2.82
4815 5121 4.962362 TCTTTTCCTCCCAAAGCTCTTTTT 59.038 37.500 0.00 0.00 32.17 1.94
4816 5122 4.546674 TCTTTTCCTCCCAAAGCTCTTTT 58.453 39.130 0.00 0.00 32.17 2.27
4817 5123 4.184649 TCTTTTCCTCCCAAAGCTCTTT 57.815 40.909 0.00 0.00 32.17 2.52
4818 5124 3.884037 TCTTTTCCTCCCAAAGCTCTT 57.116 42.857 0.00 0.00 32.17 2.85
4819 5125 3.139211 ACTTCTTTTCCTCCCAAAGCTCT 59.861 43.478 0.00 0.00 32.17 4.09
4820 5126 3.491342 ACTTCTTTTCCTCCCAAAGCTC 58.509 45.455 0.00 0.00 32.17 4.09
4821 5127 3.602205 ACTTCTTTTCCTCCCAAAGCT 57.398 42.857 0.00 0.00 32.17 3.74
4822 5128 3.891977 AGAACTTCTTTTCCTCCCAAAGC 59.108 43.478 0.00 0.00 32.17 3.51
4863 5169 3.428589 GGTTCATTTGCCTCTTCATCTGC 60.429 47.826 0.00 0.00 0.00 4.26
4884 5190 6.284891 ACATTGTGATAAGAAATGGTTGGG 57.715 37.500 0.00 0.00 35.95 4.12
4940 5246 1.402968 GCCATGCATTCTCGAACACAT 59.597 47.619 0.00 0.00 0.00 3.21
4942 5248 0.247814 CGCCATGCATTCTCGAACAC 60.248 55.000 0.00 0.00 0.00 3.32
4943 5249 0.673333 ACGCCATGCATTCTCGAACA 60.673 50.000 15.98 0.00 0.00 3.18
4944 5250 1.286501 TACGCCATGCATTCTCGAAC 58.713 50.000 15.98 0.00 0.00 3.95
4949 5258 2.224606 CCAGATTACGCCATGCATTCT 58.775 47.619 0.00 0.00 0.00 2.40
4953 5262 0.035534 ACACCAGATTACGCCATGCA 60.036 50.000 0.00 0.00 0.00 3.96
4960 5269 3.063997 GCAAGGATTCACACCAGATTACG 59.936 47.826 0.00 0.00 0.00 3.18
4966 5275 1.608055 TGTGCAAGGATTCACACCAG 58.392 50.000 0.00 0.00 38.18 4.00
4967 5276 2.161855 GATGTGCAAGGATTCACACCA 58.838 47.619 0.00 0.00 44.74 4.17
4971 5280 2.532531 CGTGATGTGCAAGGATTCAC 57.467 50.000 0.00 0.00 34.70 3.18
4990 5299 4.664677 ACAGAGACACGCCGCACC 62.665 66.667 0.00 0.00 0.00 5.01
4991 5300 3.106407 GACAGAGACACGCCGCAC 61.106 66.667 0.00 0.00 0.00 5.34
4992 5301 3.601685 TGACAGAGACACGCCGCA 61.602 61.111 0.00 0.00 0.00 5.69
4993 5302 3.106407 GTGACAGAGACACGCCGC 61.106 66.667 0.00 0.00 0.00 6.53
4994 5303 1.730902 CTGTGACAGAGACACGCCG 60.731 63.158 6.79 0.00 40.61 6.46
4995 5304 2.024319 GCTGTGACAGAGACACGCC 61.024 63.158 18.18 0.00 40.61 5.68
5005 5314 4.927782 GCCGGTGGTGCTGTGACA 62.928 66.667 1.90 0.00 0.00 3.58
5012 5321 4.643387 AACCTCAGCCGGTGGTGC 62.643 66.667 1.90 0.00 42.43 5.01
5439 5751 2.732016 CCACCTTCGACCACGTGA 59.268 61.111 19.30 0.00 40.69 4.35
5461 5773 2.802414 GTGTACGACGTGACCCGC 60.802 66.667 11.56 0.00 41.42 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.