Multiple sequence alignment - TraesCS5B01G316100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G316100 chr5B 100.000 6899 0 0 1 6899 498264584 498271482 0.000000e+00 12741.0
1 TraesCS5B01G316100 chr5B 100.000 2519 0 0 7181 9699 498271764 498274282 0.000000e+00 4652.0
2 TraesCS5B01G316100 chr5B 92.771 2559 141 22 2712 5241 498531577 498534120 0.000000e+00 3661.0
3 TraesCS5B01G316100 chr5B 93.339 1276 65 9 3983 5241 498711061 498712333 0.000000e+00 1868.0
4 TraesCS5B01G316100 chr5B 93.065 1269 68 9 3989 5241 498788018 498789282 0.000000e+00 1838.0
5 TraesCS5B01G316100 chr5B 92.706 1275 84 7 2717 3983 498709636 498710909 0.000000e+00 1831.0
6 TraesCS5B01G316100 chr5B 92.790 1276 69 10 3983 5241 498791376 498792645 0.000000e+00 1825.0
7 TraesCS5B01G316100 chr5B 92.817 1253 70 9 3983 5219 498784647 498785895 0.000000e+00 1797.0
8 TraesCS5B01G316100 chr5B 94.714 1135 30 7 8574 9699 498795650 498796763 0.000000e+00 1736.0
9 TraesCS5B01G316100 chr5B 94.499 1127 23 6 8574 9699 498281936 498283024 0.000000e+00 1701.0
10 TraesCS5B01G316100 chr5B 94.867 974 32 7 8574 9543 498536098 498537057 0.000000e+00 1506.0
11 TraesCS5B01G316100 chr5B 83.153 1478 145 58 1237 2674 498707955 498709368 0.000000e+00 1254.0
12 TraesCS5B01G316100 chr5B 83.042 1486 147 56 1229 2674 498781473 498782893 0.000000e+00 1251.0
13 TraesCS5B01G316100 chr5B 93.349 842 47 4 5782 6622 498279951 498280784 0.000000e+00 1236.0
14 TraesCS5B01G316100 chr5B 83.427 1430 136 51 1585 2953 498526252 498527641 0.000000e+00 1234.0
15 TraesCS5B01G316100 chr5B 92.184 806 37 4 3179 3983 498783710 498784490 0.000000e+00 1116.0
16 TraesCS5B01G316100 chr5B 94.689 546 22 1 9154 9699 498715246 498715784 0.000000e+00 841.0
17 TraesCS5B01G316100 chr5B 85.573 811 77 23 2170 2953 498530545 498531342 0.000000e+00 813.0
18 TraesCS5B01G316100 chr5B 78.396 1347 183 60 3612 4914 498284969 498286251 0.000000e+00 776.0
19 TraesCS5B01G316100 chr5B 90.072 554 44 8 2717 3261 498783162 498783713 0.000000e+00 708.0
20 TraesCS5B01G316100 chr5B 91.731 387 24 3 5243 5622 498713760 498714145 1.850000e-146 531.0
21 TraesCS5B01G316100 chr5B 81.595 652 87 20 7582 8207 498526756 498527400 8.690000e-140 508.0
22 TraesCS5B01G316100 chr5B 80.523 688 103 16 7582 8245 498782307 498782987 5.230000e-137 499.0
23 TraesCS5B01G316100 chr5B 87.707 423 45 3 687 1109 498525380 498525795 4.070000e-133 486.0
24 TraesCS5B01G316100 chr5B 88.372 387 38 2 724 1109 498707441 498707821 8.880000e-125 459.0
25 TraesCS5B01G316100 chr5B 81.932 559 73 17 7675 8207 498530545 498531101 1.920000e-121 448.0
26 TraesCS5B01G316100 chr5B 91.883 308 20 3 7181 7485 498794888 498795193 9.000000e-115 425.0
27 TraesCS5B01G316100 chr5B 92.045 264 14 4 7181 7440 498281027 498281287 1.990000e-96 364.0
28 TraesCS5B01G316100 chr5B 84.776 335 32 9 3652 3983 498802840 498803158 1.570000e-82 318.0
29 TraesCS5B01G316100 chr5B 94.211 190 10 1 8364 8553 498281595 498281783 1.230000e-73 289.0
30 TraesCS5B01G316100 chr5B 93.000 200 8 3 7290 7485 498281281 498281478 4.430000e-73 287.0
31 TraesCS5B01G316100 chr5B 94.595 185 9 1 8369 8553 498714232 498714415 1.590000e-72 285.0
32 TraesCS5B01G316100 chr5B 93.158 190 12 1 8364 8553 498535758 498535946 2.670000e-70 278.0
33 TraesCS5B01G316100 chr5B 92.063 189 13 2 8365 8553 498795311 498795497 2.080000e-66 265.0
34 TraesCS5B01G316100 chr5B 78.059 474 65 32 3520 3980 498540740 498541187 7.470000e-66 263.0
35 TraesCS5B01G316100 chr5B 80.345 290 43 5 7927 8204 456375683 456375396 3.550000e-49 207.0
36 TraesCS5B01G316100 chr5B 91.837 147 11 1 2807 2953 498709492 498709637 4.590000e-48 204.0
37 TraesCS5B01G316100 chr5B 91.216 148 11 2 2807 2953 498783017 498783163 5.940000e-47 200.0
38 TraesCS5B01G316100 chr5B 83.043 230 24 7 8247 8462 498545576 498545804 2.760000e-45 195.0
39 TraesCS5B01G316100 chr5B 79.276 304 41 6 3983 4273 498541271 498541565 9.940000e-45 193.0
40 TraesCS5B01G316100 chr5B 87.050 139 16 2 1789 1925 498708438 498708576 1.300000e-33 156.0
41 TraesCS5B01G316100 chr5B 87.050 139 16 2 1789 1925 498781963 498782101 1.300000e-33 156.0
42 TraesCS5B01G316100 chr5B 97.468 79 2 0 9621 9699 498537069 498537147 1.700000e-27 135.0
43 TraesCS5B01G316100 chr5B 90.000 100 10 0 2 101 592297543 592297444 7.910000e-26 130.0
44 TraesCS5B01G316100 chr5B 97.260 73 2 0 7616 7688 498795237 498795309 3.680000e-24 124.0
45 TraesCS5B01G316100 chr5B 94.737 57 2 1 7430 7485 498535581 498535637 4.830000e-13 87.9
46 TraesCS5B01G316100 chr5B 94.643 56 2 1 6655 6710 498794801 498794855 1.740000e-12 86.1
47 TraesCS5B01G316100 chr5D 95.115 4012 124 32 2231 6213 413436517 413440485 0.000000e+00 6257.0
48 TraesCS5B01G316100 chr5D 92.631 2049 105 22 3059 5088 413600455 413602476 0.000000e+00 2905.0
49 TraesCS5B01G316100 chr5D 96.560 1599 38 7 604 2199 413434932 413436516 0.000000e+00 2632.0
50 TraesCS5B01G316100 chr5D 96.400 1500 36 6 7582 9066 413448609 413450105 0.000000e+00 2455.0
51 TraesCS5B01G316100 chr5D 94.236 1388 66 8 5243 6622 413574195 413575576 0.000000e+00 2108.0
52 TraesCS5B01G316100 chr5D 93.300 1388 81 6 5243 6622 413468233 413469616 0.000000e+00 2037.0
53 TraesCS5B01G316100 chr5D 93.151 1387 68 6 5243 6622 413604026 413605392 0.000000e+00 2010.0
54 TraesCS5B01G316100 chr5D 94.275 1275 56 8 3983 5241 413571709 413572982 0.000000e+00 1934.0
55 TraesCS5B01G316100 chr5D 92.863 1275 79 9 2717 3983 413570279 413571549 0.000000e+00 1840.0
56 TraesCS5B01G316100 chr5D 95.475 1127 30 7 8574 9699 413576561 413577667 0.000000e+00 1779.0
57 TraesCS5B01G316100 chr5D 94.754 915 27 5 8574 9487 413606394 413607288 0.000000e+00 1404.0
58 TraesCS5B01G316100 chr5D 94.032 888 31 8 8574 9460 413470631 413471497 0.000000e+00 1327.0
59 TraesCS5B01G316100 chr5D 83.086 1484 145 60 1235 2679 413598235 413599651 0.000000e+00 1253.0
60 TraesCS5B01G316100 chr5D 83.762 1361 136 49 1352 2674 413568431 413569744 0.000000e+00 1210.0
61 TraesCS5B01G316100 chr5D 96.291 647 17 1 9053 9699 413453953 413454592 0.000000e+00 1055.0
62 TraesCS5B01G316100 chr5D 79.691 970 140 31 3520 4465 413612657 413613593 0.000000e+00 647.0
63 TraesCS5B01G316100 chr5D 89.726 438 39 1 672 1109 413567820 413568251 1.100000e-153 555.0
64 TraesCS5B01G316100 chr5D 94.648 355 19 0 6300 6654 413447337 413447691 1.420000e-152 551.0
65 TraesCS5B01G316100 chr5D 89.066 439 40 3 672 1109 413597672 413598103 1.110000e-148 538.0
66 TraesCS5B01G316100 chr5D 87.917 480 28 9 9222 9699 431913857 431913406 1.110000e-148 538.0
67 TraesCS5B01G316100 chr5D 80.344 697 105 16 7582 8254 413599061 413599749 5.230000e-137 499.0
68 TraesCS5B01G316100 chr5D 80.201 697 106 17 7582 8254 413569159 413569847 2.430000e-135 494.0
69 TraesCS5B01G316100 chr5D 94.805 308 12 3 7186 7491 413448256 413448561 2.450000e-130 477.0
70 TraesCS5B01G316100 chr5D 92.157 306 19 3 7183 7485 413469861 413470164 2.500000e-115 427.0
71 TraesCS5B01G316100 chr5D 91.883 308 20 3 7181 7485 413605635 413605940 9.000000e-115 425.0
72 TraesCS5B01G316100 chr5D 91.234 308 16 7 7181 7485 413575803 413576102 9.070000e-110 409.0
73 TraesCS5B01G316100 chr5D 80.916 524 85 6 1 512 220674050 220674570 5.460000e-107 399.0
74 TraesCS5B01G316100 chr5D 91.379 290 19 4 2717 3000 413600153 413600442 9.130000e-105 392.0
75 TraesCS5B01G316100 chr5D 94.821 251 6 1 9449 9699 413476791 413477034 1.530000e-102 385.0
76 TraesCS5B01G316100 chr5D 94.686 207 11 0 6655 6861 413447837 413448043 1.220000e-83 322.0
77 TraesCS5B01G316100 chr5D 95.238 189 8 1 8364 8552 413606057 413606244 2.050000e-76 298.0
78 TraesCS5B01G316100 chr5D 94.737 190 9 1 8364 8553 413576219 413576407 2.650000e-75 294.0
79 TraesCS5B01G316100 chr5D 76.145 524 84 27 3 490 517455654 517456172 4.530000e-58 237.0
80 TraesCS5B01G316100 chr5D 79.330 358 39 17 3534 3875 413671177 413671515 1.640000e-52 219.0
81 TraesCS5B01G316100 chr5D 84.071 226 20 8 8251 8462 413619226 413619449 4.590000e-48 204.0
82 TraesCS5B01G316100 chr5D 87.857 140 14 3 1789 1925 413598719 413598858 2.800000e-35 161.0
83 TraesCS5B01G316100 chr5D 87.143 140 15 3 1789 1925 413568817 413568956 1.300000e-33 156.0
84 TraesCS5B01G316100 chr5D 89.815 108 6 1 6208 6315 413445703 413445805 6.110000e-27 134.0
85 TraesCS5B01G316100 chr5D 97.297 74 2 0 7616 7689 413576146 413576219 1.020000e-24 126.0
86 TraesCS5B01G316100 chr5D 97.260 73 2 0 7617 7689 413605985 413606057 3.680000e-24 124.0
87 TraesCS5B01G316100 chr5D 89.412 85 9 0 5897 5981 413620469 413620553 3.700000e-19 108.0
88 TraesCS5B01G316100 chr5D 85.437 103 14 1 4484 4586 413613711 413613812 1.330000e-18 106.0
89 TraesCS5B01G316100 chr5D 94.915 59 3 0 6841 6899 413448091 413448149 1.040000e-14 93.5
90 TraesCS5B01G316100 chr5A 92.857 2548 149 19 2717 5241 525838124 525840661 0.000000e+00 3666.0
91 TraesCS5B01G316100 chr5A 92.244 2553 164 18 2717 5241 525740280 525742826 0.000000e+00 3587.0
92 TraesCS5B01G316100 chr5A 92.064 2558 163 16 2712 5241 525926778 525929323 0.000000e+00 3563.0
93 TraesCS5B01G316100 chr5A 95.751 1977 56 7 4001 5960 525710150 525712115 0.000000e+00 3160.0
94 TraesCS5B01G316100 chr5A 95.767 1441 53 5 8085 9520 525714096 525715533 0.000000e+00 2316.0
95 TraesCS5B01G316100 chr5A 93.305 1389 82 6 5243 6622 526284559 526285945 0.000000e+00 2039.0
96 TraesCS5B01G316100 chr5A 95.031 1127 32 9 8574 9699 526286950 526288053 0.000000e+00 1749.0
97 TraesCS5B01G316100 chr5A 93.322 1183 59 10 4075 5241 525744513 525745691 0.000000e+00 1729.0
98 TraesCS5B01G316100 chr5A 92.640 1182 67 9 4075 5241 525747380 525748556 0.000000e+00 1683.0
99 TraesCS5B01G316100 chr5A 96.882 930 28 1 2270 3198 525708263 525709192 0.000000e+00 1555.0
100 TraesCS5B01G316100 chr5A 98.313 889 12 2 3095 3983 525709142 525710027 0.000000e+00 1555.0
101 TraesCS5B01G316100 chr5A 92.110 1128 50 10 8574 9699 525751586 525752676 0.000000e+00 1554.0
102 TraesCS5B01G316100 chr5A 94.842 950 32 6 8574 9520 525932613 525933548 0.000000e+00 1467.0
103 TraesCS5B01G316100 chr5A 92.211 873 51 9 5476 6334 525930528 525931397 0.000000e+00 1219.0
104 TraesCS5B01G316100 chr5A 96.000 700 25 1 5958 6654 525712196 525712895 0.000000e+00 1134.0
105 TraesCS5B01G316100 chr5A 94.935 691 32 3 1238 1925 525705249 525705939 0.000000e+00 1079.0
106 TraesCS5B01G316100 chr5A 93.538 619 16 4 551 1159 525704636 525705240 0.000000e+00 900.0
107 TraesCS5B01G316100 chr5A 89.824 511 44 5 2164 2674 526279659 526280161 0.000000e+00 649.0
108 TraesCS5B01G316100 chr5A 87.732 538 59 7 1 534 525704116 525704650 1.070000e-173 621.0
109 TraesCS5B01G316100 chr5A 90.336 476 19 10 1818 2291 525705866 525706316 5.010000e-167 599.0
110 TraesCS5B01G316100 chr5A 95.918 343 11 1 7585 7927 525713757 525714096 3.960000e-153 553.0
111 TraesCS5B01G316100 chr5A 79.059 850 111 50 1336 2168 525925022 525925821 1.120000e-143 521.0
112 TraesCS5B01G316100 chr5A 77.508 947 127 59 1234 2168 525836284 525837156 3.150000e-134 490.0
113 TraesCS5B01G316100 chr5A 93.968 315 12 3 7181 7489 525713388 525713701 4.100000e-128 470.0
114 TraesCS5B01G316100 chr5A 93.645 299 12 1 9401 9699 525841261 525841552 3.220000e-119 440.0
115 TraesCS5B01G316100 chr5A 92.484 306 18 3 7181 7483 526286187 526286490 5.380000e-117 433.0
116 TraesCS5B01G316100 chr5A 97.143 245 7 0 6655 6899 525713040 525713284 1.950000e-111 414.0
117 TraesCS5B01G316100 chr5A 83.864 440 49 7 672 1109 525737839 525738258 5.460000e-107 399.0
118 TraesCS5B01G316100 chr5A 81.081 518 79 12 1 503 441137041 441137554 7.060000e-106 396.0
119 TraesCS5B01G316100 chr5A 83.295 437 51 5 675 1109 525835734 525836150 5.500000e-102 383.0
120 TraesCS5B01G316100 chr5A 94.048 252 14 1 5243 5494 525747129 525747379 1.980000e-101 381.0
121 TraesCS5B01G316100 chr5A 93.651 252 15 1 5243 5494 525744262 525744512 9.200000e-100 375.0
122 TraesCS5B01G316100 chr5A 79.473 531 67 23 1234 1764 525738394 525738882 1.210000e-88 339.0
123 TraesCS5B01G316100 chr5A 80.535 411 56 11 7768 8156 525708265 525708673 2.650000e-75 294.0
124 TraesCS5B01G316100 chr5A 93.158 190 11 2 8364 8553 526286609 526286796 2.670000e-70 278.0
125 TraesCS5B01G316100 chr5A 93.529 170 11 0 7181 7350 525931829 525931998 4.500000e-63 254.0
126 TraesCS5B01G316100 chr5A 90.608 181 10 1 9519 9699 525933850 525934023 5.860000e-57 233.0
127 TraesCS5B01G316100 chr5A 82.143 280 31 12 1894 2168 525739048 525739313 1.270000e-53 222.0
128 TraesCS5B01G316100 chr5A 95.192 104 5 0 6519 6622 525931495 525931598 2.170000e-36 165.0
129 TraesCS5B01G316100 chr5A 85.714 140 17 2 5555 5691 526378120 526378259 2.820000e-30 145.0
130 TraesCS5B01G316100 chr5A 96.341 82 3 0 7501 7582 537448236 537448155 1.700000e-27 135.0
131 TraesCS5B01G316100 chr2B 82.061 524 79 11 1 511 730178755 730179276 5.380000e-117 433.0
132 TraesCS5B01G316100 chr2B 80.497 523 89 8 1 511 162860311 162860832 1.180000e-103 388.0
133 TraesCS5B01G316100 chr3A 81.404 527 78 11 1 511 693124938 693124416 7.010000e-111 412.0
134 TraesCS5B01G316100 chr3A 95.122 82 4 0 7501 7582 566878086 566878167 7.910000e-26 130.0
135 TraesCS5B01G316100 chr3A 93.902 82 5 0 7501 7582 543724414 543724495 3.680000e-24 124.0
136 TraesCS5B01G316100 chr2D 81.298 524 83 6 1 511 19634652 19634131 2.520000e-110 411.0
137 TraesCS5B01G316100 chr4D 80.998 521 83 10 4 511 11872045 11871528 5.460000e-107 399.0
138 TraesCS5B01G316100 chr4B 80.614 521 86 9 3 510 16799905 16800423 1.180000e-103 388.0
139 TraesCS5B01G316100 chr4B 80.614 521 84 8 5 511 64686028 64685511 4.250000e-103 387.0
140 TraesCS5B01G316100 chr7A 80.577 520 86 6 5 511 17833383 17833900 4.250000e-103 387.0
141 TraesCS5B01G316100 chr6A 79.350 523 95 7 1 511 540151229 540151750 1.200000e-93 355.0
142 TraesCS5B01G316100 chr6D 84.133 271 32 6 1 261 55613568 55613837 1.620000e-62 252.0
143 TraesCS5B01G316100 chr7B 78.199 422 68 16 2 409 667095062 667094651 2.090000e-61 248.0
144 TraesCS5B01G316100 chr3D 97.674 86 2 0 7501 7586 552668588 552668503 2.180000e-31 148.0
145 TraesCS5B01G316100 chr7D 98.780 82 1 0 7501 7582 454086039 454086120 7.850000e-31 147.0
146 TraesCS5B01G316100 chr7D 76.838 272 38 14 2 261 174757169 174757427 7.910000e-26 130.0
147 TraesCS5B01G316100 chr3B 97.561 82 2 0 7501 7582 377118213 377118132 3.650000e-29 141.0
148 TraesCS5B01G316100 chr3B 95.122 82 4 0 7501 7582 791662251 791662332 7.910000e-26 130.0
149 TraesCS5B01G316100 chr1A 97.561 82 2 0 7501 7582 305339515 305339434 3.650000e-29 141.0
150 TraesCS5B01G316100 chr1D 96.386 83 2 1 7501 7582 136364482 136364564 1.700000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G316100 chr5B 498264584 498274282 9698 False 8696.500000 12741 100.000000 1 9699 2 chr5B.!!$F3 9698
1 TraesCS5B01G316100 chr5B 498781473 498796763 15290 False 859.007143 1838 90.951571 1229 9699 14 chr5B.!!$F7 8470
2 TraesCS5B01G316100 chr5B 498707441 498715784 8343 False 825.444444 1868 90.830222 724 9699 9 chr5B.!!$F6 8975
3 TraesCS5B01G316100 chr5B 498525380 498541565 16185 False 801.075000 3661 87.547500 687 9699 12 chr5B.!!$F5 9012
4 TraesCS5B01G316100 chr5B 498279951 498286251 6300 False 775.500000 1701 90.916667 3612 9699 6 chr5B.!!$F4 6087
5 TraesCS5B01G316100 chr5D 413434932 413440485 5553 False 4444.500000 6257 95.837500 604 6213 2 chr5D.!!$F5 5609
6 TraesCS5B01G316100 chr5D 413468233 413471497 3264 False 1263.666667 2037 93.163000 5243 9460 3 chr5D.!!$F7 4217
7 TraesCS5B01G316100 chr5D 413567820 413577667 9847 False 991.363636 2108 90.995364 672 9699 11 chr5D.!!$F8 9027
8 TraesCS5B01G316100 chr5D 413597672 413607288 9616 False 909.909091 2905 90.604455 672 9487 11 chr5D.!!$F9 8815
9 TraesCS5B01G316100 chr5D 413445703 413454592 8889 False 726.785714 2455 94.508571 6208 9699 7 chr5D.!!$F6 3491
10 TraesCS5B01G316100 chr5D 220674050 220674570 520 False 399.000000 399 80.916000 1 512 1 chr5D.!!$F1 511
11 TraesCS5B01G316100 chr5D 413612657 413613812 1155 False 376.500000 647 82.564000 3520 4586 2 chr5D.!!$F10 1066
12 TraesCS5B01G316100 chr5D 517455654 517456172 518 False 237.000000 237 76.145000 3 490 1 chr5D.!!$F4 487
13 TraesCS5B01G316100 chr5A 525835734 525841552 5818 False 1244.750000 3666 86.826250 675 9699 4 chr5A.!!$F6 9024
14 TraesCS5B01G316100 chr5A 525737839 525752676 14837 False 1141.000000 3587 89.277222 672 9699 9 chr5A.!!$F5 9027
15 TraesCS5B01G316100 chr5A 525704116 525715533 11417 False 1126.923077 3160 93.601385 1 9520 13 chr5A.!!$F4 9519
16 TraesCS5B01G316100 chr5A 526284559 526288053 3494 False 1124.750000 2039 93.494500 5243 9699 4 chr5A.!!$F8 4456
17 TraesCS5B01G316100 chr5A 525925022 525934023 9001 False 1060.285714 3563 91.072143 1336 9699 7 chr5A.!!$F7 8363
18 TraesCS5B01G316100 chr5A 526279659 526280161 502 False 649.000000 649 89.824000 2164 2674 1 chr5A.!!$F2 510
19 TraesCS5B01G316100 chr5A 441137041 441137554 513 False 396.000000 396 81.081000 1 503 1 chr5A.!!$F1 502
20 TraesCS5B01G316100 chr2B 730178755 730179276 521 False 433.000000 433 82.061000 1 511 1 chr2B.!!$F2 510
21 TraesCS5B01G316100 chr2B 162860311 162860832 521 False 388.000000 388 80.497000 1 511 1 chr2B.!!$F1 510
22 TraesCS5B01G316100 chr3A 693124416 693124938 522 True 412.000000 412 81.404000 1 511 1 chr3A.!!$R1 510
23 TraesCS5B01G316100 chr2D 19634131 19634652 521 True 411.000000 411 81.298000 1 511 1 chr2D.!!$R1 510
24 TraesCS5B01G316100 chr4D 11871528 11872045 517 True 399.000000 399 80.998000 4 511 1 chr4D.!!$R1 507
25 TraesCS5B01G316100 chr4B 16799905 16800423 518 False 388.000000 388 80.614000 3 510 1 chr4B.!!$F1 507
26 TraesCS5B01G316100 chr4B 64685511 64686028 517 True 387.000000 387 80.614000 5 511 1 chr4B.!!$R1 506
27 TraesCS5B01G316100 chr7A 17833383 17833900 517 False 387.000000 387 80.577000 5 511 1 chr7A.!!$F1 506
28 TraesCS5B01G316100 chr6A 540151229 540151750 521 False 355.000000 355 79.350000 1 511 1 chr6A.!!$F1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 157 0.968901 TCTAGCATCGTCGGTGGGTT 60.969 55.000 7.76 0.00 0.00 4.11 F
300 337 1.082019 TGCACTGGTCCTATGGGGA 59.918 57.895 0.00 0.00 42.77 4.81 F
658 698 1.642952 GCCGAAAGCAAGCCAGAGAG 61.643 60.000 0.00 0.00 42.97 3.20 F
2647 8646 1.487452 TTGTCGTCGTTGAGCTGCAC 61.487 55.000 1.02 0.00 0.00 4.57 F
3226 10023 0.106894 CAGTTAAGGGAGGGATCCGC 59.893 60.000 5.45 0.00 0.00 5.54 F
4976 14831 3.542969 AAGGTTTCTATTTGGTGGGCT 57.457 42.857 0.00 0.00 0.00 5.19 F
6171 17328 0.247814 GAATGCGATGTGCCTTGACG 60.248 55.000 0.00 0.00 45.60 4.35 F
6184 17341 0.376152 CTTGACGATGCACATGGAGC 59.624 55.000 0.00 0.96 0.00 4.70 F
7950 29757 0.324943 AGTGCTTACGCCAATCTGGT 59.675 50.000 0.00 0.00 40.46 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2341 0.663153 GAGAAACAACCACAGCGCTT 59.337 50.000 7.50 0.00 0.00 4.68 R
2422 4720 6.555315 AGCACTATTGACGAATTCCATTTTC 58.445 36.000 0.00 0.00 0.00 2.29 R
2741 8770 3.311091 AGGTTGAAATGGGCATATGCAT 58.689 40.909 28.07 12.10 44.36 3.96 R
3631 10433 0.981183 AGGATACGTGCAAGTTCCCA 59.019 50.000 21.17 3.56 46.39 4.37 R
5164 15020 0.251354 GGCCAGAAGAGCATGACAGA 59.749 55.000 0.00 0.00 0.00 3.41 R
6201 17358 0.035739 ACGACGGGCTGGTTATTTGT 59.964 50.000 0.00 0.00 0.00 2.83 R
7381 28954 1.084289 GCCTAAGGCGTACACAAAGG 58.916 55.000 0.00 0.00 39.62 3.11 R
7957 29764 1.180029 CAGCATGCAAACCCTAAGCT 58.820 50.000 21.98 0.00 0.00 3.74 R
8859 30819 0.177141 AACACCCATGACCGTATCCG 59.823 55.000 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 157 0.968901 TCTAGCATCGTCGGTGGGTT 60.969 55.000 7.76 0.00 0.00 4.11
300 337 1.082019 TGCACTGGTCCTATGGGGA 59.918 57.895 0.00 0.00 42.77 4.81
341 378 6.866010 TCGACTGTCTACTACAACAAGTTA 57.134 37.500 6.21 0.00 37.74 2.24
437 475 2.036089 GGTGGTCTACGGATCTGGATTC 59.964 54.545 6.47 0.00 0.00 2.52
512 550 7.832503 AGATAAAAAGATTTCCCGCAAAATG 57.167 32.000 0.00 0.00 0.00 2.32
516 554 7.509141 AAAAAGATTTCCCGCAAAATGAAAT 57.491 28.000 0.00 0.00 40.42 2.17
519 557 5.707411 GATTTCCCGCAAAATGAAATCTG 57.293 39.130 13.95 0.00 45.46 2.90
521 559 4.599047 TTCCCGCAAAATGAAATCTGTT 57.401 36.364 0.00 0.00 0.00 3.16
522 560 4.599047 TCCCGCAAAATGAAATCTGTTT 57.401 36.364 0.00 0.00 0.00 2.83
523 561 4.305769 TCCCGCAAAATGAAATCTGTTTG 58.694 39.130 0.00 0.00 0.00 2.93
526 564 4.025061 CCGCAAAATGAAATCTGTTTGCAA 60.025 37.500 22.37 0.00 0.00 4.08
527 565 5.334260 CCGCAAAATGAAATCTGTTTGCAAT 60.334 36.000 22.37 0.00 0.00 3.56
528 566 5.562248 CGCAAAATGAAATCTGTTTGCAATG 59.438 36.000 22.37 11.02 0.00 2.82
530 568 5.616488 AAATGAAATCTGTTTGCAATGGC 57.384 34.783 0.00 0.00 41.68 4.40
531 569 3.042871 TGAAATCTGTTTGCAATGGCC 57.957 42.857 0.00 0.00 40.13 5.36
532 570 2.633967 TGAAATCTGTTTGCAATGGCCT 59.366 40.909 3.32 0.00 40.13 5.19
533 571 3.071312 TGAAATCTGTTTGCAATGGCCTT 59.929 39.130 3.32 0.00 40.13 4.35
534 572 3.775261 AATCTGTTTGCAATGGCCTTT 57.225 38.095 3.32 0.00 40.13 3.11
535 573 3.775261 ATCTGTTTGCAATGGCCTTTT 57.225 38.095 3.32 0.00 40.13 2.27
536 574 3.557228 TCTGTTTGCAATGGCCTTTTT 57.443 38.095 3.32 0.00 40.13 1.94
585 623 4.893424 TGGAAACAAACTTGTAGAGCAC 57.107 40.909 0.00 0.00 41.31 4.40
658 698 1.642952 GCCGAAAGCAAGCCAGAGAG 61.643 60.000 0.00 0.00 42.97 3.20
1082 1237 2.571757 CAAGTCGCCCGTGCTAGA 59.428 61.111 0.00 0.00 34.43 2.43
1200 1368 3.570638 CAAGCAGCGCCGGAGATG 61.571 66.667 19.79 19.79 0.00 2.90
1211 1379 4.119363 GGAGATGGCCCTGCAGCA 62.119 66.667 8.66 0.81 0.00 4.41
1212 1380 2.516460 GAGATGGCCCTGCAGCAG 60.516 66.667 16.23 16.23 0.00 4.24
1213 1381 4.816984 AGATGGCCCTGCAGCAGC 62.817 66.667 17.81 16.35 42.57 5.25
1227 1395 2.581138 CAGCGCGCCACGTACATA 60.581 61.111 30.33 0.00 46.11 2.29
1581 1750 3.604667 TTGCGTGCCAGCCCTTTG 61.605 61.111 0.00 0.00 36.02 2.77
1611 1780 2.996395 CTGCATCTCCCACAGGCT 59.004 61.111 0.00 0.00 0.00 4.58
1803 1978 9.026074 GTAGATGTGATAGTTTAGCAAAGAGAC 57.974 37.037 0.00 0.00 0.00 3.36
1828 2040 6.236017 TGAAACCGTATCAGATTTGTTGAC 57.764 37.500 0.00 0.00 0.00 3.18
2127 2431 5.699097 TGTACCTGTTTTTAAGCATCACC 57.301 39.130 0.00 0.00 0.00 4.02
2257 2582 5.782845 AGTTATAGGATGGAGTTCTGGGATC 59.217 44.000 0.00 0.00 0.00 3.36
2571 4869 5.652324 AGTTCCTCTTTCCTCTTAGTACCA 58.348 41.667 0.00 0.00 0.00 3.25
2647 8646 1.487452 TTGTCGTCGTTGAGCTGCAC 61.487 55.000 1.02 0.00 0.00 4.57
2649 8648 3.030308 CGTCGTTGAGCTGCACGT 61.030 61.111 12.71 0.00 0.00 4.49
2650 8649 1.728074 CGTCGTTGAGCTGCACGTA 60.728 57.895 12.71 0.00 0.00 3.57
2741 8770 9.755804 TTTAATGTGTGTTATGAAAAATCAGCA 57.244 25.926 0.00 0.00 0.00 4.41
2767 9504 5.186409 GCATATGCCCATTTCAACCTCATAT 59.814 40.000 17.26 0.00 34.31 1.78
3052 9796 0.250513 CCCAGTGGTAGGAGTTCAGC 59.749 60.000 8.74 0.00 0.00 4.26
3226 10023 0.106894 CAGTTAAGGGAGGGATCCGC 59.893 60.000 5.45 0.00 0.00 5.54
3582 10384 8.992349 TCTTATGAACCATATCTTCCTTCAGAA 58.008 33.333 0.00 0.00 0.00 3.02
3631 10433 5.506708 GTTTCCCACCCAAATGTACTAGAT 58.493 41.667 0.00 0.00 0.00 1.98
3959 10761 9.466497 AAGGTGAATATAACATCATTGTCAGTT 57.534 29.630 0.00 0.00 34.06 3.16
4240 14085 4.497291 TGTTTCACTTCCAGTAGGTTGT 57.503 40.909 0.00 0.00 35.89 3.32
4355 14200 4.517285 TGAATATTGAGACAAGTGCCTCC 58.483 43.478 0.00 0.00 0.00 4.30
4458 14303 7.988028 ACTTTCTACAGTTAGCATAATCCCTTC 59.012 37.037 0.00 0.00 0.00 3.46
4510 14356 4.801891 TGTCAGTGTTATACCACGAAGTC 58.198 43.478 0.00 0.00 41.61 3.01
4803 14653 6.154192 ACCTGATACACTATGATGAGCCTATG 59.846 42.308 0.00 0.00 0.00 2.23
4821 14671 5.297029 GCCTATGTTAGAACTGGAATTGGTC 59.703 44.000 0.00 0.00 0.00 4.02
4976 14831 3.542969 AAGGTTTCTATTTGGTGGGCT 57.457 42.857 0.00 0.00 0.00 5.19
5164 15020 3.116096 TCACTTAGTCACCTAGCCCAT 57.884 47.619 0.00 0.00 0.00 4.00
5183 15039 0.251354 TCTGTCATGCTCTTCTGGCC 59.749 55.000 0.00 0.00 0.00 5.36
5316 16383 2.024273 ACCCCAGTCTCTCGAATCCTTA 60.024 50.000 0.00 0.00 0.00 2.69
5494 16561 2.642311 TCTTTGTGGCAATCCTCTGGTA 59.358 45.455 0.00 0.00 0.00 3.25
5495 16562 3.266772 TCTTTGTGGCAATCCTCTGGTAT 59.733 43.478 0.00 0.00 0.00 2.73
5497 16564 3.281727 TGTGGCAATCCTCTGGTATTC 57.718 47.619 0.00 0.00 0.00 1.75
5501 16568 2.952310 GGCAATCCTCTGGTATTCCAAC 59.048 50.000 0.00 0.00 43.81 3.77
5502 16569 3.620488 GCAATCCTCTGGTATTCCAACA 58.380 45.455 0.00 0.00 43.81 3.33
5551 16625 1.081892 CTGGTGGATTCGTTCTGCAG 58.918 55.000 7.63 7.63 0.00 4.41
5563 16637 3.253188 TCGTTCTGCAGCAAGCTATTTTT 59.747 39.130 9.47 0.00 45.94 1.94
5752 16826 2.079925 GTAGCTTTGAAGACCTGCAGG 58.920 52.381 31.60 31.60 42.17 4.85
6055 17212 2.960688 AAGAGAAGGGCTGGGCGAC 61.961 63.158 0.00 0.00 0.00 5.19
6084 17241 4.292186 AGACTAGTGTCAACATGCCATT 57.708 40.909 0.00 0.00 45.20 3.16
6165 17322 1.742831 TGGTAAAGAATGCGATGTGCC 59.257 47.619 0.00 0.00 45.60 5.01
6166 17323 2.017049 GGTAAAGAATGCGATGTGCCT 58.983 47.619 0.00 0.00 45.60 4.75
6167 17324 2.423538 GGTAAAGAATGCGATGTGCCTT 59.576 45.455 0.00 0.00 45.60 4.35
6168 17325 2.642139 AAAGAATGCGATGTGCCTTG 57.358 45.000 0.00 0.00 45.60 3.61
6169 17326 1.825090 AAGAATGCGATGTGCCTTGA 58.175 45.000 0.00 0.00 45.60 3.02
6170 17327 1.089920 AGAATGCGATGTGCCTTGAC 58.910 50.000 0.00 0.00 45.60 3.18
6171 17328 0.247814 GAATGCGATGTGCCTTGACG 60.248 55.000 0.00 0.00 45.60 4.35
6172 17329 0.673333 AATGCGATGTGCCTTGACGA 60.673 50.000 0.00 0.00 45.60 4.20
6173 17330 0.462581 ATGCGATGTGCCTTGACGAT 60.463 50.000 0.00 0.00 45.60 3.73
6174 17331 1.349627 GCGATGTGCCTTGACGATG 59.650 57.895 0.00 0.00 37.76 3.84
6175 17332 1.349627 CGATGTGCCTTGACGATGC 59.650 57.895 0.00 0.00 0.00 3.91
6176 17333 1.360931 CGATGTGCCTTGACGATGCA 61.361 55.000 0.00 0.00 0.00 3.96
6180 17337 2.173433 TGCCTTGACGATGCACATG 58.827 52.632 0.00 0.00 0.00 3.21
6182 17339 1.026182 GCCTTGACGATGCACATGGA 61.026 55.000 10.18 0.00 34.59 3.41
6183 17340 1.012086 CCTTGACGATGCACATGGAG 58.988 55.000 0.00 0.00 34.59 3.86
6184 17341 0.376152 CTTGACGATGCACATGGAGC 59.624 55.000 0.00 0.96 0.00 4.70
6185 17342 1.026182 TTGACGATGCACATGGAGCC 61.026 55.000 9.52 0.00 0.00 4.70
6186 17343 1.450134 GACGATGCACATGGAGCCA 60.450 57.895 9.52 0.00 0.00 4.75
6187 17344 0.816825 GACGATGCACATGGAGCCAT 60.817 55.000 9.52 0.00 37.08 4.40
6194 17351 3.417601 CATGGAGCCATGCTGACG 58.582 61.111 15.89 0.00 45.71 4.35
6195 17352 2.184830 CATGGAGCCATGCTGACGG 61.185 63.158 15.89 0.00 45.71 4.79
6196 17353 2.369633 ATGGAGCCATGCTGACGGA 61.370 57.895 0.23 0.00 39.88 4.69
6197 17354 2.512515 GGAGCCATGCTGACGGAC 60.513 66.667 0.00 0.00 39.88 4.79
6198 17355 2.265739 GAGCCATGCTGACGGACA 59.734 61.111 0.00 0.00 39.88 4.02
6199 17356 1.375908 GAGCCATGCTGACGGACAA 60.376 57.895 0.00 0.00 39.88 3.18
6200 17357 1.639298 GAGCCATGCTGACGGACAAC 61.639 60.000 0.00 0.00 39.88 3.32
6201 17358 1.965930 GCCATGCTGACGGACAACA 60.966 57.895 0.00 0.00 0.00 3.33
6202 17359 1.868997 CCATGCTGACGGACAACAC 59.131 57.895 0.00 0.00 0.00 3.32
6203 17360 0.884259 CCATGCTGACGGACAACACA 60.884 55.000 0.00 0.00 0.00 3.72
6205 17362 1.333308 CATGCTGACGGACAACACAAA 59.667 47.619 0.00 0.00 0.00 2.83
6207 17364 2.839975 TGCTGACGGACAACACAAATA 58.160 42.857 0.00 0.00 0.00 1.40
6209 17366 3.002862 TGCTGACGGACAACACAAATAAC 59.997 43.478 0.00 0.00 0.00 1.89
6211 17368 3.542648 TGACGGACAACACAAATAACCA 58.457 40.909 0.00 0.00 0.00 3.67
6252 23849 5.903198 AAAATGGGGATGAAAACTTCCAA 57.097 34.783 0.00 0.00 0.00 3.53
6467 24064 0.449388 GGAGATTGCTCTTGTTGGCG 59.551 55.000 0.00 0.00 41.06 5.69
6743 28166 1.610522 GTCTGCTGGCTTTGATGTTGT 59.389 47.619 0.00 0.00 0.00 3.32
6786 28209 1.074599 TAGCTGTGTTGGCATGCCA 59.925 52.632 35.59 35.59 45.63 4.92
6813 28236 2.743636 TGTAGCACTGTCTACAAGGC 57.256 50.000 13.84 0.00 44.06 4.35
6829 28252 3.660111 GCGGACCTGTGTTGCACC 61.660 66.667 0.00 0.00 32.73 5.01
6834 28257 2.901840 CCTGTGTTGCACCGCTGT 60.902 61.111 0.00 0.00 32.73 4.40
6845 28268 2.270205 CCGCTGTTGCTCCATCCT 59.730 61.111 0.00 0.00 36.97 3.24
7208 28635 6.599244 TCTCTGCCCATGTAGATTACTTTTTG 59.401 38.462 0.00 0.00 32.46 2.44
7275 28702 6.037172 GGTAACAGATGTGGTAGTTTAGCATG 59.963 42.308 0.00 0.00 38.57 4.06
7298 28725 8.610035 CATGGATAAATGGAATCGTATCAGATG 58.390 37.037 0.00 0.00 29.38 2.90
7381 28954 5.613142 GCTTATGCAATTGTCTGTTTGTTGC 60.613 40.000 7.40 0.00 43.93 4.17
7396 28969 0.666374 GTTGCCTTTGTGTACGCCTT 59.334 50.000 3.51 0.00 0.00 4.35
7491 29211 5.254115 GGAAGCTTAATAGTCAACCCTGTT 58.746 41.667 0.00 0.00 0.00 3.16
7493 29213 4.010349 AGCTTAATAGTCAACCCTGTTGC 58.990 43.478 2.13 0.00 0.00 4.17
7494 29214 3.128764 GCTTAATAGTCAACCCTGTTGCC 59.871 47.826 2.13 0.00 0.00 4.52
7495 29215 4.589908 CTTAATAGTCAACCCTGTTGCCT 58.410 43.478 2.13 0.00 0.00 4.75
7498 29218 1.402787 AGTCAACCCTGTTGCCTTTG 58.597 50.000 2.13 0.00 0.00 2.77
7501 29221 2.691011 GTCAACCCTGTTGCCTTTGTTA 59.309 45.455 2.13 0.00 0.00 2.41
7507 29227 2.228822 CCTGTTGCCTTTGTTAATCGCT 59.771 45.455 0.00 0.00 0.00 4.93
7508 29228 3.492313 CTGTTGCCTTTGTTAATCGCTC 58.508 45.455 0.00 0.00 0.00 5.03
7510 29230 2.488153 GTTGCCTTTGTTAATCGCTCCT 59.512 45.455 0.00 0.00 0.00 3.69
7512 29232 1.671328 GCCTTTGTTAATCGCTCCTCC 59.329 52.381 0.00 0.00 0.00 4.30
7515 29235 4.372656 CCTTTGTTAATCGCTCCTCCTAG 58.627 47.826 0.00 0.00 0.00 3.02
7517 29237 3.308035 TGTTAATCGCTCCTCCTAGGA 57.692 47.619 11.98 11.98 43.43 2.94
7532 29252 6.091718 CTCCTAGGAGGCTATAACAAACTC 57.908 45.833 28.68 0.00 38.51 3.01
7533 29253 5.778542 TCCTAGGAGGCTATAACAAACTCT 58.221 41.667 7.62 0.00 34.61 3.24
7534 29254 6.919158 TCCTAGGAGGCTATAACAAACTCTA 58.081 40.000 7.62 0.00 34.61 2.43
7536 29256 7.670559 TCCTAGGAGGCTATAACAAACTCTATC 59.329 40.741 7.62 0.00 34.61 2.08
7537 29257 7.672239 CCTAGGAGGCTATAACAAACTCTATCT 59.328 40.741 1.05 0.00 0.00 1.98
7538 29258 7.922699 AGGAGGCTATAACAAACTCTATCTT 57.077 36.000 0.00 0.00 0.00 2.40
7539 29259 8.325477 AGGAGGCTATAACAAACTCTATCTTT 57.675 34.615 0.00 0.00 0.00 2.52
7541 29261 9.047371 GGAGGCTATAACAAACTCTATCTTTTC 57.953 37.037 0.00 0.00 0.00 2.29
7542 29262 9.601217 GAGGCTATAACAAACTCTATCTTTTCA 57.399 33.333 0.00 0.00 0.00 2.69
7543 29263 9.959721 AGGCTATAACAAACTCTATCTTTTCAA 57.040 29.630 0.00 0.00 0.00 2.69
7557 29277 8.779303 TCTATCTTTTCAATACAAAGAAACGCA 58.221 29.630 0.00 0.00 42.23 5.24
7558 29278 9.393249 CTATCTTTTCAATACAAAGAAACGCAA 57.607 29.630 0.00 0.00 42.23 4.85
7559 29279 7.678194 TCTTTTCAATACAAAGAAACGCAAG 57.322 32.000 0.00 0.00 37.33 4.01
7560 29280 7.254852 TCTTTTCAATACAAAGAAACGCAAGT 58.745 30.769 0.00 0.00 43.25 3.16
7561 29281 7.431084 TCTTTTCAATACAAAGAAACGCAAGTC 59.569 33.333 0.00 0.00 41.12 3.01
7562 29282 7.432252 CTTTTCAATACAAAGAAACGCAAGTCT 59.568 33.333 0.00 0.00 40.95 3.24
7577 29297 3.857093 GCAAGTCTTTTGCGTTTTCTCAA 59.143 39.130 0.00 0.00 35.58 3.02
7578 29298 4.326009 GCAAGTCTTTTGCGTTTTCTCAAA 59.674 37.500 0.00 0.00 35.58 2.69
7579 29299 5.164002 GCAAGTCTTTTGCGTTTTCTCAAAA 60.164 36.000 0.00 0.00 40.61 2.44
7580 29300 6.617529 GCAAGTCTTTTGCGTTTTCTCAAAAA 60.618 34.615 0.00 0.00 41.72 1.94
7728 29535 5.415701 TGTTAAAGCTTTGAGGCAATCCTAG 59.584 40.000 22.02 0.00 44.46 3.02
7803 29610 1.601166 ACCTTTGGGTTTAGTGTCGC 58.399 50.000 0.00 0.00 44.73 5.19
7817 29624 2.290641 AGTGTCGCCTAGTTTTTGCTTG 59.709 45.455 0.00 0.00 0.00 4.01
7833 29640 4.566545 TGCTTGAAACATTACCACACAG 57.433 40.909 0.00 0.00 0.00 3.66
7858 29665 7.440556 AGCTGTCAGCACATATTTCTACTATTG 59.559 37.037 26.23 0.00 45.56 1.90
7859 29666 7.225538 GCTGTCAGCACATATTTCTACTATTGT 59.774 37.037 20.16 0.00 41.89 2.71
7860 29667 9.102757 CTGTCAGCACATATTTCTACTATTGTT 57.897 33.333 0.00 0.00 0.00 2.83
7884 29691 9.943163 GTTATAAAGAGCTTTGAAATGGATCTC 57.057 33.333 5.76 0.00 34.23 2.75
7927 29734 9.834628 TGTAAATTGTAAAAGATTGGATTCGTC 57.165 29.630 0.00 0.00 0.00 4.20
7928 29735 9.834628 GTAAATTGTAAAAGATTGGATTCGTCA 57.165 29.630 0.00 0.00 0.00 4.35
7930 29737 9.927668 AAATTGTAAAAGATTGGATTCGTCAAT 57.072 25.926 0.00 0.00 37.52 2.57
7933 29740 8.786826 TGTAAAAGATTGGATTCGTCAATAGT 57.213 30.769 0.00 0.00 35.26 2.12
7934 29741 8.664798 TGTAAAAGATTGGATTCGTCAATAGTG 58.335 33.333 0.00 0.00 35.26 2.74
7935 29742 5.741388 AAGATTGGATTCGTCAATAGTGC 57.259 39.130 0.00 0.00 35.26 4.40
7936 29743 5.028549 AGATTGGATTCGTCAATAGTGCT 57.971 39.130 0.00 0.00 35.26 4.40
7937 29744 5.431765 AGATTGGATTCGTCAATAGTGCTT 58.568 37.500 0.00 0.00 35.26 3.91
7938 29745 6.582636 AGATTGGATTCGTCAATAGTGCTTA 58.417 36.000 0.00 0.00 35.26 3.09
7939 29746 6.480320 AGATTGGATTCGTCAATAGTGCTTAC 59.520 38.462 0.00 0.00 35.26 2.34
7940 29747 4.109766 TGGATTCGTCAATAGTGCTTACG 58.890 43.478 0.00 0.00 34.99 3.18
7941 29748 3.060473 GGATTCGTCAATAGTGCTTACGC 60.060 47.826 0.00 0.00 33.75 4.42
7942 29749 1.917273 TCGTCAATAGTGCTTACGCC 58.083 50.000 0.00 0.00 33.75 5.68
7943 29750 1.202817 TCGTCAATAGTGCTTACGCCA 59.797 47.619 0.00 0.00 33.75 5.69
7944 29751 1.996898 CGTCAATAGTGCTTACGCCAA 59.003 47.619 0.00 0.00 34.43 4.52
7945 29752 2.607635 CGTCAATAGTGCTTACGCCAAT 59.392 45.455 0.00 0.00 34.43 3.16
7946 29753 3.302480 CGTCAATAGTGCTTACGCCAATC 60.302 47.826 0.00 0.00 34.43 2.67
7947 29754 3.871594 GTCAATAGTGCTTACGCCAATCT 59.128 43.478 0.00 0.00 34.43 2.40
7948 29755 3.871006 TCAATAGTGCTTACGCCAATCTG 59.129 43.478 0.00 0.00 34.43 2.90
7949 29756 2.309528 TAGTGCTTACGCCAATCTGG 57.690 50.000 0.00 0.00 41.55 3.86
7950 29757 0.324943 AGTGCTTACGCCAATCTGGT 59.675 50.000 0.00 0.00 40.46 4.00
7951 29758 0.727398 GTGCTTACGCCAATCTGGTC 59.273 55.000 0.00 0.00 40.46 4.02
7952 29759 0.739462 TGCTTACGCCAATCTGGTCG 60.739 55.000 7.62 7.62 40.46 4.79
7953 29760 0.459585 GCTTACGCCAATCTGGTCGA 60.460 55.000 13.78 0.00 40.46 4.20
7954 29761 1.806623 GCTTACGCCAATCTGGTCGAT 60.807 52.381 13.78 0.00 40.46 3.59
7955 29762 2.128035 CTTACGCCAATCTGGTCGATC 58.872 52.381 13.78 0.00 40.46 3.69
7956 29763 1.399714 TACGCCAATCTGGTCGATCT 58.600 50.000 13.78 0.00 40.46 2.75
7957 29764 1.399714 ACGCCAATCTGGTCGATCTA 58.600 50.000 13.78 0.00 40.46 1.98
7958 29765 1.338337 ACGCCAATCTGGTCGATCTAG 59.662 52.381 13.78 0.00 40.46 2.43
7959 29766 1.789506 GCCAATCTGGTCGATCTAGC 58.210 55.000 0.00 0.00 40.46 3.42
7960 29767 1.342819 GCCAATCTGGTCGATCTAGCT 59.657 52.381 0.00 0.00 40.46 3.32
7961 29768 2.224161 GCCAATCTGGTCGATCTAGCTT 60.224 50.000 0.00 0.00 40.46 3.74
7962 29769 3.005897 GCCAATCTGGTCGATCTAGCTTA 59.994 47.826 0.00 0.00 40.46 3.09
7963 29770 4.804108 CCAATCTGGTCGATCTAGCTTAG 58.196 47.826 0.00 0.00 31.35 2.18
7964 29771 4.321601 CCAATCTGGTCGATCTAGCTTAGG 60.322 50.000 0.00 0.00 31.35 2.69
7965 29772 2.865079 TCTGGTCGATCTAGCTTAGGG 58.135 52.381 0.00 0.00 0.00 3.53
7966 29773 2.175069 TCTGGTCGATCTAGCTTAGGGT 59.825 50.000 0.00 0.00 0.00 4.34
7967 29774 2.959707 CTGGTCGATCTAGCTTAGGGTT 59.040 50.000 0.00 0.00 0.00 4.11
7968 29775 3.371965 TGGTCGATCTAGCTTAGGGTTT 58.628 45.455 0.00 0.00 0.00 3.27
7969 29776 3.132289 TGGTCGATCTAGCTTAGGGTTTG 59.868 47.826 0.00 0.00 0.00 2.93
7970 29777 3.124560 GTCGATCTAGCTTAGGGTTTGC 58.875 50.000 0.00 0.00 0.00 3.68
7971 29778 2.764010 TCGATCTAGCTTAGGGTTTGCA 59.236 45.455 0.00 0.00 0.00 4.08
7972 29779 3.388024 TCGATCTAGCTTAGGGTTTGCAT 59.612 43.478 0.00 0.00 0.00 3.96
7973 29780 3.496130 CGATCTAGCTTAGGGTTTGCATG 59.504 47.826 0.00 0.00 0.00 4.06
7974 29781 2.643551 TCTAGCTTAGGGTTTGCATGC 58.356 47.619 11.82 11.82 0.00 4.06
7975 29782 2.239654 TCTAGCTTAGGGTTTGCATGCT 59.760 45.455 20.33 0.00 0.00 3.79
7976 29783 1.180029 AGCTTAGGGTTTGCATGCTG 58.820 50.000 20.33 0.00 0.00 4.41
7977 29784 0.459063 GCTTAGGGTTTGCATGCTGC 60.459 55.000 20.33 8.62 45.29 5.25
7978 29785 1.180029 CTTAGGGTTTGCATGCTGCT 58.820 50.000 20.33 0.00 45.31 4.24
7979 29786 2.368439 CTTAGGGTTTGCATGCTGCTA 58.632 47.619 20.33 0.00 45.31 3.49
7980 29787 2.734755 TAGGGTTTGCATGCTGCTAT 57.265 45.000 20.33 3.27 45.31 2.97
7981 29788 1.108776 AGGGTTTGCATGCTGCTATG 58.891 50.000 20.33 4.55 45.31 2.23
7982 29789 0.819582 GGGTTTGCATGCTGCTATGT 59.180 50.000 20.33 0.00 45.31 2.29
7983 29790 1.202336 GGGTTTGCATGCTGCTATGTC 60.202 52.381 20.33 0.53 45.31 3.06
7984 29791 1.473677 GGTTTGCATGCTGCTATGTCA 59.526 47.619 20.33 3.77 45.31 3.58
7985 29792 2.100252 GGTTTGCATGCTGCTATGTCAT 59.900 45.455 20.33 0.00 45.31 3.06
7986 29793 3.316029 GGTTTGCATGCTGCTATGTCATA 59.684 43.478 20.33 0.00 45.31 2.15
7987 29794 4.022589 GGTTTGCATGCTGCTATGTCATAT 60.023 41.667 20.33 0.00 45.31 1.78
7988 29795 5.152097 GTTTGCATGCTGCTATGTCATATC 58.848 41.667 20.33 0.00 45.31 1.63
7989 29796 4.010667 TGCATGCTGCTATGTCATATCA 57.989 40.909 20.33 0.00 45.31 2.15
7990 29797 3.749609 TGCATGCTGCTATGTCATATCAC 59.250 43.478 20.33 0.00 45.31 3.06
7991 29798 3.126514 GCATGCTGCTATGTCATATCACC 59.873 47.826 11.37 0.00 40.96 4.02
7992 29799 3.030668 TGCTGCTATGTCATATCACCG 57.969 47.619 0.00 0.00 0.00 4.94
7993 29800 2.365293 TGCTGCTATGTCATATCACCGT 59.635 45.455 0.00 0.00 0.00 4.83
7994 29801 3.181466 TGCTGCTATGTCATATCACCGTT 60.181 43.478 0.00 0.00 0.00 4.44
7995 29802 3.809832 GCTGCTATGTCATATCACCGTTT 59.190 43.478 0.00 0.00 0.00 3.60
7996 29803 4.084328 GCTGCTATGTCATATCACCGTTTC 60.084 45.833 0.00 0.00 0.00 2.78
7997 29804 5.276461 TGCTATGTCATATCACCGTTTCT 57.724 39.130 0.00 0.00 0.00 2.52
7998 29805 5.670485 TGCTATGTCATATCACCGTTTCTT 58.330 37.500 0.00 0.00 0.00 2.52
7999 29806 5.523552 TGCTATGTCATATCACCGTTTCTTG 59.476 40.000 0.00 0.00 0.00 3.02
8000 29807 5.523916 GCTATGTCATATCACCGTTTCTTGT 59.476 40.000 0.00 0.00 0.00 3.16
8001 29808 6.292381 GCTATGTCATATCACCGTTTCTTGTC 60.292 42.308 0.00 0.00 0.00 3.18
8002 29809 4.888917 TGTCATATCACCGTTTCTTGTCA 58.111 39.130 0.00 0.00 0.00 3.58
8003 29810 5.487433 TGTCATATCACCGTTTCTTGTCAT 58.513 37.500 0.00 0.00 0.00 3.06
8004 29811 5.351189 TGTCATATCACCGTTTCTTGTCATG 59.649 40.000 0.00 0.00 0.00 3.07
8005 29812 4.332543 TCATATCACCGTTTCTTGTCATGC 59.667 41.667 0.00 0.00 0.00 4.06
8006 29813 1.960417 TCACCGTTTCTTGTCATGCA 58.040 45.000 0.00 0.00 0.00 3.96
8007 29814 2.503331 TCACCGTTTCTTGTCATGCAT 58.497 42.857 0.00 0.00 0.00 3.96
8008 29815 2.483877 TCACCGTTTCTTGTCATGCATC 59.516 45.455 0.00 0.00 0.00 3.91
8009 29816 2.226200 CACCGTTTCTTGTCATGCATCA 59.774 45.455 0.00 0.00 0.00 3.07
8010 29817 2.485426 ACCGTTTCTTGTCATGCATCAG 59.515 45.455 0.00 0.00 0.00 2.90
8011 29818 2.485426 CCGTTTCTTGTCATGCATCAGT 59.515 45.455 0.00 0.00 0.00 3.41
8012 29819 3.058016 CCGTTTCTTGTCATGCATCAGTT 60.058 43.478 0.00 0.00 0.00 3.16
8013 29820 4.154015 CCGTTTCTTGTCATGCATCAGTTA 59.846 41.667 0.00 0.00 0.00 2.24
8014 29821 5.334802 CCGTTTCTTGTCATGCATCAGTTAA 60.335 40.000 0.00 0.00 0.00 2.01
8015 29822 6.317088 CGTTTCTTGTCATGCATCAGTTAAT 58.683 36.000 0.00 0.00 0.00 1.40
8016 29823 7.413988 CCGTTTCTTGTCATGCATCAGTTAATA 60.414 37.037 0.00 0.00 0.00 0.98
8017 29824 7.637519 CGTTTCTTGTCATGCATCAGTTAATAG 59.362 37.037 0.00 0.00 0.00 1.73
8018 29825 8.454106 GTTTCTTGTCATGCATCAGTTAATAGT 58.546 33.333 0.00 0.00 0.00 2.12
8019 29826 8.565896 TTCTTGTCATGCATCAGTTAATAGTT 57.434 30.769 0.00 0.00 0.00 2.24
8020 29827 8.565896 TCTTGTCATGCATCAGTTAATAGTTT 57.434 30.769 0.00 0.00 0.00 2.66
8021 29828 9.665719 TCTTGTCATGCATCAGTTAATAGTTTA 57.334 29.630 0.00 0.00 0.00 2.01
8042 29849 8.803235 AGTTTAATAAATCTGGTTCCTGTTTCC 58.197 33.333 0.00 0.00 0.00 3.13
8043 29850 8.803235 GTTTAATAAATCTGGTTCCTGTTTCCT 58.197 33.333 0.00 0.00 0.00 3.36
8044 29851 8.950007 TTAATAAATCTGGTTCCTGTTTCCTT 57.050 30.769 0.00 0.00 0.00 3.36
8045 29852 7.855784 AATAAATCTGGTTCCTGTTTCCTTT 57.144 32.000 0.00 0.00 0.00 3.11
8046 29853 7.855784 ATAAATCTGGTTCCTGTTTCCTTTT 57.144 32.000 0.00 0.00 0.00 2.27
8047 29854 8.950007 ATAAATCTGGTTCCTGTTTCCTTTTA 57.050 30.769 0.00 0.00 0.00 1.52
8048 29855 6.901081 AATCTGGTTCCTGTTTCCTTTTAG 57.099 37.500 0.00 0.00 0.00 1.85
8049 29856 5.382664 TCTGGTTCCTGTTTCCTTTTAGT 57.617 39.130 0.00 0.00 0.00 2.24
8050 29857 6.503560 TCTGGTTCCTGTTTCCTTTTAGTA 57.496 37.500 0.00 0.00 0.00 1.82
8051 29858 6.293698 TCTGGTTCCTGTTTCCTTTTAGTAC 58.706 40.000 0.00 0.00 0.00 2.73
8052 29859 5.379187 TGGTTCCTGTTTCCTTTTAGTACC 58.621 41.667 0.00 0.00 0.00 3.34
8053 29860 4.763793 GGTTCCTGTTTCCTTTTAGTACCC 59.236 45.833 0.00 0.00 0.00 3.69
8054 29861 5.457197 GGTTCCTGTTTCCTTTTAGTACCCT 60.457 44.000 0.00 0.00 0.00 4.34
8055 29862 5.917545 TCCTGTTTCCTTTTAGTACCCTT 57.082 39.130 0.00 0.00 0.00 3.95
8056 29863 5.872963 TCCTGTTTCCTTTTAGTACCCTTC 58.127 41.667 0.00 0.00 0.00 3.46
8057 29864 5.008331 CCTGTTTCCTTTTAGTACCCTTCC 58.992 45.833 0.00 0.00 0.00 3.46
8058 29865 4.644498 TGTTTCCTTTTAGTACCCTTCCG 58.356 43.478 0.00 0.00 0.00 4.30
8059 29866 3.986996 TTCCTTTTAGTACCCTTCCGG 57.013 47.619 0.00 0.00 37.81 5.14
8061 29868 4.059773 TCCTTTTAGTACCCTTCCGGTA 57.940 45.455 0.00 0.00 45.97 4.02
8071 29878 4.482952 ACCCTTCCGGTATTTTACTGAG 57.517 45.455 0.00 0.00 45.97 3.35
8072 29879 4.098894 ACCCTTCCGGTATTTTACTGAGA 58.901 43.478 0.00 0.00 45.97 3.27
8073 29880 4.533311 ACCCTTCCGGTATTTTACTGAGAA 59.467 41.667 0.00 0.00 45.97 2.87
8074 29881 4.874396 CCCTTCCGGTATTTTACTGAGAAC 59.126 45.833 0.00 0.00 37.22 3.01
8075 29882 5.484715 CCTTCCGGTATTTTACTGAGAACA 58.515 41.667 0.00 0.00 37.22 3.18
8076 29883 6.113411 CCTTCCGGTATTTTACTGAGAACAT 58.887 40.000 0.00 0.00 37.22 2.71
8077 29884 6.037172 CCTTCCGGTATTTTACTGAGAACATG 59.963 42.308 0.00 0.00 37.22 3.21
8078 29885 6.288941 TCCGGTATTTTACTGAGAACATGA 57.711 37.500 0.00 0.00 37.22 3.07
8079 29886 6.103997 TCCGGTATTTTACTGAGAACATGAC 58.896 40.000 0.00 0.00 37.22 3.06
8080 29887 6.070995 TCCGGTATTTTACTGAGAACATGACT 60.071 38.462 0.00 0.00 37.22 3.41
8081 29888 6.036083 CCGGTATTTTACTGAGAACATGACTG 59.964 42.308 0.00 0.00 37.22 3.51
8082 29889 6.811665 CGGTATTTTACTGAGAACATGACTGA 59.188 38.462 0.00 0.00 37.22 3.41
8083 29890 7.492669 CGGTATTTTACTGAGAACATGACTGAT 59.507 37.037 0.00 0.00 37.22 2.90
8160 29967 7.814264 ATAAATCACCATCTCCTCAATTGAC 57.186 36.000 3.38 0.00 0.00 3.18
8254 30061 6.646653 TGTTATGAGAAATCAGCGGTCATATC 59.353 38.462 0.00 0.00 31.78 1.63
8317 30128 0.111061 TGATTTGGCTGTCACTGCCT 59.889 50.000 24.71 6.45 46.43 4.75
8343 30154 4.110036 TCCATGTCATCTAGTGTTGTCG 57.890 45.455 0.00 0.00 0.00 4.35
8351 30162 6.929049 TGTCATCTAGTGTTGTCGAAGAAATT 59.071 34.615 0.00 0.00 39.69 1.82
8436 30250 7.358770 TGCATTATAAAAATGGCAGGTATGT 57.641 32.000 0.00 0.00 0.00 2.29
8666 30621 2.988010 TACCTCATGTCAGGCATCAC 57.012 50.000 0.33 0.00 36.98 3.06
8710 30665 5.009510 TGAAATGCGTTGAAAGGATTCTGAA 59.990 36.000 0.00 0.00 36.48 3.02
8859 30819 5.818136 TGAGTATTGTTCTTTGCTATGCC 57.182 39.130 0.00 0.00 0.00 4.40
9613 35889 7.643123 ACCCCATCAATAATCTTTCACTTACT 58.357 34.615 0.00 0.00 0.00 2.24
9614 35890 7.557719 ACCCCATCAATAATCTTTCACTTACTG 59.442 37.037 0.00 0.00 0.00 2.74
9615 35891 7.420800 CCCATCAATAATCTTTCACTTACTGC 58.579 38.462 0.00 0.00 0.00 4.40
9616 35892 7.067372 CCCATCAATAATCTTTCACTTACTGCA 59.933 37.037 0.00 0.00 0.00 4.41
9617 35893 8.461222 CCATCAATAATCTTTCACTTACTGCAA 58.539 33.333 0.00 0.00 0.00 4.08
9618 35894 9.844790 CATCAATAATCTTTCACTTACTGCAAA 57.155 29.630 0.00 0.00 0.00 3.68
9681 35957 1.834263 AGGAGTGGGACAGCTTGTATC 59.166 52.381 0.00 0.00 41.80 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 157 1.552792 TCACAGACACACCTTCACACA 59.447 47.619 0.00 0.00 0.00 3.72
183 219 0.320374 ACGACCAGATCCGAGCAAAA 59.680 50.000 0.00 0.00 0.00 2.44
300 337 3.734735 GTCGAAAAGTCTTCGTGCTAAGT 59.265 43.478 0.00 0.00 42.09 2.24
341 378 2.765807 CCTCCCGGAGCAGGTCAT 60.766 66.667 9.17 0.00 0.00 3.06
371 409 2.665185 GTTGAAGACACGCCGCCT 60.665 61.111 0.00 0.00 0.00 5.52
447 485 5.510671 ACAGCACAACGAACATCTTAAAAG 58.489 37.500 0.00 0.00 0.00 2.27
448 486 5.065346 TGACAGCACAACGAACATCTTAAAA 59.935 36.000 0.00 0.00 0.00 1.52
452 490 2.560504 TGACAGCACAACGAACATCTT 58.439 42.857 0.00 0.00 0.00 2.40
453 491 2.238942 TGACAGCACAACGAACATCT 57.761 45.000 0.00 0.00 0.00 2.90
498 536 5.151297 ACAGATTTCATTTTGCGGGAAAT 57.849 34.783 0.00 0.00 42.26 2.17
512 550 3.323751 AGGCCATTGCAAACAGATTTC 57.676 42.857 5.01 0.00 40.13 2.17
516 554 3.557228 AAAAAGGCCATTGCAAACAGA 57.443 38.095 5.01 0.00 40.13 3.41
537 575 6.038050 GGTCATTGCAAACAGGAATTCAAAAA 59.962 34.615 1.71 0.00 35.96 1.94
538 576 5.526846 GGTCATTGCAAACAGGAATTCAAAA 59.473 36.000 1.71 0.00 35.96 2.44
539 577 5.055812 GGTCATTGCAAACAGGAATTCAAA 58.944 37.500 1.71 0.00 35.96 2.69
540 578 4.344679 AGGTCATTGCAAACAGGAATTCAA 59.655 37.500 1.71 0.00 35.96 2.69
543 581 4.503643 CCAAGGTCATTGCAAACAGGAATT 60.504 41.667 1.71 0.00 35.96 2.17
544 582 3.007182 CCAAGGTCATTGCAAACAGGAAT 59.993 43.478 1.71 0.00 39.02 3.01
545 583 2.364970 CCAAGGTCATTGCAAACAGGAA 59.635 45.455 1.71 0.00 37.60 3.36
549 587 3.791245 GTTTCCAAGGTCATTGCAAACA 58.209 40.909 11.01 0.00 45.24 2.83
558 596 5.502079 TCTACAAGTTTGTTTCCAAGGTCA 58.498 37.500 2.46 0.00 42.35 4.02
658 698 4.572571 TGGTGGGTTGGGTCGTGC 62.573 66.667 0.00 0.00 0.00 5.34
1184 1352 4.845580 CCATCTCCGGCGCTGCTT 62.846 66.667 11.81 0.00 0.00 3.91
1192 1360 4.559063 CTGCAGGGCCATCTCCGG 62.559 72.222 6.18 0.00 0.00 5.14
1194 1362 4.119363 TGCTGCAGGGCCATCTCC 62.119 66.667 17.12 0.00 0.00 3.71
1196 1364 4.816984 GCTGCTGCAGGGCCATCT 62.817 66.667 29.05 0.00 39.41 2.90
1211 1379 2.162754 GTTATGTACGTGGCGCGCT 61.163 57.895 32.29 14.07 46.11 5.92
1212 1380 2.318696 GTTATGTACGTGGCGCGC 59.681 61.111 25.94 25.94 46.11 6.86
1213 1381 2.611365 CGTTATGTACGTGGCGCG 59.389 61.111 20.21 20.21 45.14 6.86
1221 1389 1.593479 GGGCGGCTCCGTTATGTAC 60.593 63.158 9.56 0.00 42.09 2.90
1222 1390 2.799452 GGGGCGGCTCCGTTATGTA 61.799 63.158 1.52 0.00 42.09 2.29
1223 1391 4.171103 GGGGCGGCTCCGTTATGT 62.171 66.667 1.52 0.00 42.09 2.29
1224 1392 4.929707 GGGGGCGGCTCCGTTATG 62.930 72.222 14.19 0.00 42.09 1.90
1611 1780 1.024046 GCCGTGCCATCATGTGTACA 61.024 55.000 0.00 0.00 0.00 2.90
1803 1978 6.742718 GTCAACAAATCTGATACGGTTTCATG 59.257 38.462 1.75 0.97 0.00 3.07
1828 2040 9.395707 CTACTCTATAAACTACAACCATAAGCG 57.604 37.037 0.00 0.00 0.00 4.68
1901 2179 8.840321 ACAATTGTATAAGCTACAACCATGATC 58.160 33.333 9.97 0.00 39.83 2.92
1904 2182 8.124823 CAGACAATTGTATAAGCTACAACCATG 58.875 37.037 11.95 5.85 39.83 3.66
1978 2278 5.874895 ACTGCTCGCTGTAATCGTATATA 57.125 39.130 0.00 0.00 0.00 0.86
1979 2279 4.768130 ACTGCTCGCTGTAATCGTATAT 57.232 40.909 0.00 0.00 0.00 0.86
1980 2280 5.874895 ATACTGCTCGCTGTAATCGTATA 57.125 39.130 11.71 0.00 34.82 1.47
1984 2284 4.152526 GTCTATACTGCTCGCTGTAATCG 58.847 47.826 11.71 5.04 34.82 3.34
1986 2286 5.713792 ATGTCTATACTGCTCGCTGTAAT 57.286 39.130 11.71 5.04 34.82 1.89
1988 2288 6.174049 AGATATGTCTATACTGCTCGCTGTA 58.826 40.000 10.38 10.38 35.44 2.74
1989 2289 5.007034 AGATATGTCTATACTGCTCGCTGT 58.993 41.667 6.66 6.66 31.36 4.40
1990 2290 5.559427 AGATATGTCTATACTGCTCGCTG 57.441 43.478 0.00 0.00 31.36 5.18
1993 2293 7.589395 ACTCAAAGATATGTCTATACTGCTCG 58.411 38.462 0.00 0.00 33.30 5.03
1994 2294 9.757227 AAACTCAAAGATATGTCTATACTGCTC 57.243 33.333 0.00 0.00 33.30 4.26
2041 2341 0.663153 GAGAAACAACCACAGCGCTT 59.337 50.000 7.50 0.00 0.00 4.68
2422 4720 6.555315 AGCACTATTGACGAATTCCATTTTC 58.445 36.000 0.00 0.00 0.00 2.29
2668 8669 5.483937 TGTAGGGAGCTTTTTGAGTAGATGA 59.516 40.000 0.00 0.00 0.00 2.92
2741 8770 3.311091 AGGTTGAAATGGGCATATGCAT 58.689 40.909 28.07 12.10 44.36 3.96
3052 9796 3.120546 CGCAGATGTGTAGGTTGAACAAG 60.121 47.826 0.00 0.00 0.00 3.16
3582 10384 3.439857 ACATGTAGGGTGTTTGATGCT 57.560 42.857 0.00 0.00 0.00 3.79
3621 10423 4.680708 CGTGCAAGTTCCCATCTAGTACAT 60.681 45.833 0.00 0.00 0.00 2.29
3631 10433 0.981183 AGGATACGTGCAAGTTCCCA 59.019 50.000 21.17 3.56 46.39 4.37
3959 10761 5.304686 AGAATGTAAGGGACACAGTTTCA 57.695 39.130 0.00 0.00 42.17 2.69
4458 14303 5.530915 TGGGATAGTGAGACACAAACAAAAG 59.469 40.000 4.75 0.00 36.74 2.27
4501 14347 1.567504 AACAAGTGTCGACTTCGTGG 58.432 50.000 17.92 4.21 40.68 4.94
4510 14356 1.202245 CCCACAACCAAACAAGTGTCG 60.202 52.381 0.00 0.00 0.00 4.35
4803 14653 9.678941 CTTAAAAAGACCAATTCCAGTTCTAAC 57.321 33.333 0.00 0.00 0.00 2.34
4965 14820 8.700439 ATATTTACGTAATAAGCCCACCAAAT 57.300 30.769 9.18 0.00 32.63 2.32
5164 15020 0.251354 GGCCAGAAGAGCATGACAGA 59.749 55.000 0.00 0.00 0.00 3.41
5316 16383 4.232221 CAGTGATTTTTCAATTGAGCGCT 58.768 39.130 11.27 11.27 0.00 5.92
5494 16561 7.992608 TGTCTACTATAATGCACATGTTGGAAT 59.007 33.333 0.00 0.00 0.00 3.01
5495 16562 7.279981 GTGTCTACTATAATGCACATGTTGGAA 59.720 37.037 0.00 0.00 0.00 3.53
5497 16564 6.763135 AGTGTCTACTATAATGCACATGTTGG 59.237 38.462 0.00 0.00 34.74 3.77
5501 16568 9.920133 ATTAGAGTGTCTACTATAATGCACATG 57.080 33.333 6.54 0.00 45.03 3.21
5531 16605 0.321564 TGCAGAACGAATCCACCAGG 60.322 55.000 0.00 0.00 0.00 4.45
5535 16609 0.874390 TTGCTGCAGAACGAATCCAC 59.126 50.000 20.43 0.00 0.00 4.02
5551 16625 3.805971 GGCATGATGGAAAAATAGCTTGC 59.194 43.478 0.00 0.00 0.00 4.01
5563 16637 3.265221 GGATCCAGATAAGGCATGATGGA 59.735 47.826 6.95 0.00 40.86 3.41
6055 17212 6.565234 CATGTTGACACTAGTCTAGTTAGGG 58.435 44.000 9.95 1.97 45.20 3.53
6067 17224 2.445427 CCCAATGGCATGTTGACACTA 58.555 47.619 0.00 0.00 38.83 2.74
6084 17241 1.381191 TCTGACGATGCTAGCCCCA 60.381 57.895 13.29 2.08 0.00 4.96
6165 17322 0.376152 GCTCCATGTGCATCGTCAAG 59.624 55.000 0.00 0.00 0.00 3.02
6166 17323 1.026182 GGCTCCATGTGCATCGTCAA 61.026 55.000 9.61 0.00 0.00 3.18
6167 17324 1.450134 GGCTCCATGTGCATCGTCA 60.450 57.895 9.61 0.00 0.00 4.35
6168 17325 0.816825 ATGGCTCCATGTGCATCGTC 60.817 55.000 0.00 0.00 35.03 4.20
6169 17326 1.099295 CATGGCTCCATGTGCATCGT 61.099 55.000 18.34 0.00 46.20 3.73
6170 17327 1.652563 CATGGCTCCATGTGCATCG 59.347 57.895 18.34 0.00 46.20 3.84
6178 17335 2.191375 CCGTCAGCATGGCTCCAT 59.809 61.111 0.00 0.00 39.72 3.41
6180 17337 2.512515 GTCCGTCAGCATGGCTCC 60.513 66.667 0.00 0.00 39.72 4.70
6182 17339 1.672356 GTTGTCCGTCAGCATGGCT 60.672 57.895 0.00 0.00 39.72 4.75
6183 17340 1.965930 TGTTGTCCGTCAGCATGGC 60.966 57.895 0.00 0.00 37.35 4.40
6184 17341 0.884259 TGTGTTGTCCGTCAGCATGG 60.884 55.000 0.00 0.00 39.29 3.66
6185 17342 0.943673 TTGTGTTGTCCGTCAGCATG 59.056 50.000 0.00 0.00 39.29 4.06
6186 17343 1.674359 TTTGTGTTGTCCGTCAGCAT 58.326 45.000 0.00 0.00 39.29 3.79
6187 17344 1.674359 ATTTGTGTTGTCCGTCAGCA 58.326 45.000 0.00 0.00 35.02 4.41
6188 17345 3.551551 GTTATTTGTGTTGTCCGTCAGC 58.448 45.455 0.00 0.00 0.00 4.26
6189 17346 3.562141 TGGTTATTTGTGTTGTCCGTCAG 59.438 43.478 0.00 0.00 0.00 3.51
6190 17347 3.542648 TGGTTATTTGTGTTGTCCGTCA 58.457 40.909 0.00 0.00 0.00 4.35
6191 17348 3.608474 GCTGGTTATTTGTGTTGTCCGTC 60.608 47.826 0.00 0.00 0.00 4.79
6192 17349 2.292292 GCTGGTTATTTGTGTTGTCCGT 59.708 45.455 0.00 0.00 0.00 4.69
6193 17350 2.351350 GGCTGGTTATTTGTGTTGTCCG 60.351 50.000 0.00 0.00 0.00 4.79
6194 17351 2.029380 GGGCTGGTTATTTGTGTTGTCC 60.029 50.000 0.00 0.00 0.00 4.02
6195 17352 2.351350 CGGGCTGGTTATTTGTGTTGTC 60.351 50.000 0.00 0.00 0.00 3.18
6196 17353 1.611491 CGGGCTGGTTATTTGTGTTGT 59.389 47.619 0.00 0.00 0.00 3.32
6197 17354 1.611491 ACGGGCTGGTTATTTGTGTTG 59.389 47.619 0.00 0.00 0.00 3.33
6198 17355 1.883926 GACGGGCTGGTTATTTGTGTT 59.116 47.619 0.00 0.00 0.00 3.32
6199 17356 1.530323 GACGGGCTGGTTATTTGTGT 58.470 50.000 0.00 0.00 0.00 3.72
6200 17357 0.446222 CGACGGGCTGGTTATTTGTG 59.554 55.000 0.00 0.00 0.00 3.33
6201 17358 0.035739 ACGACGGGCTGGTTATTTGT 59.964 50.000 0.00 0.00 0.00 2.83
6202 17359 0.725117 GACGACGGGCTGGTTATTTG 59.275 55.000 0.00 0.00 0.00 2.32
6203 17360 0.392060 GGACGACGGGCTGGTTATTT 60.392 55.000 0.00 0.00 0.00 1.40
6205 17362 1.335132 ATGGACGACGGGCTGGTTAT 61.335 55.000 0.00 0.00 0.00 1.89
6207 17364 1.546589 TTATGGACGACGGGCTGGTT 61.547 55.000 0.00 0.00 0.00 3.67
6209 17366 0.810031 CTTTATGGACGACGGGCTGG 60.810 60.000 0.00 0.00 0.00 4.85
6211 17368 0.899720 TTCTTTATGGACGACGGGCT 59.100 50.000 0.00 0.00 0.00 5.19
6252 23849 2.972505 CGGCGTTGTTGAGGTGCT 60.973 61.111 0.00 0.00 0.00 4.40
6467 24064 4.022413 ACAGAAGAAAGAAACCCTAGCC 57.978 45.455 0.00 0.00 0.00 3.93
6657 24402 4.322057 ACACAAGGGCCTTCATCTTATT 57.678 40.909 17.86 0.00 0.00 1.40
6786 28209 5.804639 TGTAGACAGTGCTACAAAATGGAT 58.195 37.500 18.89 0.00 45.55 3.41
6813 28236 3.345808 CGGTGCAACACAGGTCCG 61.346 66.667 0.98 0.00 39.98 4.79
6829 28252 0.674581 TCAAGGATGGAGCAACAGCG 60.675 55.000 0.00 0.00 0.00 5.18
6834 28257 1.202687 CCGCTATCAAGGATGGAGCAA 60.203 52.381 0.00 0.00 36.36 3.91
6845 28268 2.688446 ACGAAGACAGATCCGCTATCAA 59.312 45.455 0.00 0.00 37.03 2.57
7275 28702 8.446273 CAACATCTGATACGATTCCATTTATCC 58.554 37.037 0.00 0.00 0.00 2.59
7350 28923 5.707298 ACAGACAATTGCATAAGCTACAACT 59.293 36.000 5.05 0.00 42.74 3.16
7381 28954 1.084289 GCCTAAGGCGTACACAAAGG 58.916 55.000 0.00 0.00 39.62 3.11
7491 29211 2.356135 GAGGAGCGATTAACAAAGGCA 58.644 47.619 0.00 0.00 0.00 4.75
7493 29213 3.268023 AGGAGGAGCGATTAACAAAGG 57.732 47.619 0.00 0.00 0.00 3.11
7494 29214 4.099573 TCCTAGGAGGAGCGATTAACAAAG 59.900 45.833 7.62 0.00 40.06 2.77
7495 29215 4.028131 TCCTAGGAGGAGCGATTAACAAA 58.972 43.478 7.62 0.00 40.06 2.83
7510 29230 5.778542 AGAGTTTGTTATAGCCTCCTAGGA 58.221 41.667 11.98 11.98 37.67 2.94
7512 29232 8.644374 AGATAGAGTTTGTTATAGCCTCCTAG 57.356 38.462 0.00 0.00 0.00 3.02
7515 29235 8.966069 AAAAGATAGAGTTTGTTATAGCCTCC 57.034 34.615 0.00 0.00 0.00 4.30
7517 29237 9.959721 TTGAAAAGATAGAGTTTGTTATAGCCT 57.040 29.630 0.00 0.00 0.00 4.58
7532 29252 8.948853 TGCGTTTCTTTGTATTGAAAAGATAG 57.051 30.769 0.00 0.00 41.86 2.08
7533 29253 9.393249 CTTGCGTTTCTTTGTATTGAAAAGATA 57.607 29.630 0.00 0.00 41.86 1.98
7534 29254 7.920682 ACTTGCGTTTCTTTGTATTGAAAAGAT 59.079 29.630 0.00 0.00 41.86 2.40
7536 29256 7.432252 AGACTTGCGTTTCTTTGTATTGAAAAG 59.568 33.333 0.00 0.00 34.52 2.27
7537 29257 7.254852 AGACTTGCGTTTCTTTGTATTGAAAA 58.745 30.769 0.00 0.00 34.52 2.29
7538 29258 6.791303 AGACTTGCGTTTCTTTGTATTGAAA 58.209 32.000 0.00 0.00 0.00 2.69
7539 29259 6.371809 AGACTTGCGTTTCTTTGTATTGAA 57.628 33.333 0.00 0.00 0.00 2.69
7541 29261 7.329582 CAAAAGACTTGCGTTTCTTTGTATTG 58.670 34.615 6.93 0.13 40.44 1.90
7542 29262 6.019881 GCAAAAGACTTGCGTTTCTTTGTATT 60.020 34.615 6.93 0.00 40.44 1.89
7543 29263 5.458779 GCAAAAGACTTGCGTTTCTTTGTAT 59.541 36.000 6.93 0.00 40.44 2.29
7544 29264 4.796312 GCAAAAGACTTGCGTTTCTTTGTA 59.204 37.500 6.93 0.00 40.44 2.41
7545 29265 3.612423 GCAAAAGACTTGCGTTTCTTTGT 59.388 39.130 6.93 0.00 40.44 2.83
7546 29266 4.168792 GCAAAAGACTTGCGTTTCTTTG 57.831 40.909 6.93 1.18 40.44 2.77
7577 29297 6.601217 TGCCCAAAAACAGCTAAAATCTTTTT 59.399 30.769 0.00 0.00 0.00 1.94
7578 29298 6.118852 TGCCCAAAAACAGCTAAAATCTTTT 58.881 32.000 0.00 0.00 0.00 2.27
7579 29299 5.679601 TGCCCAAAAACAGCTAAAATCTTT 58.320 33.333 0.00 0.00 0.00 2.52
7580 29300 5.289083 TGCCCAAAAACAGCTAAAATCTT 57.711 34.783 0.00 0.00 0.00 2.40
7581 29301 4.953940 TGCCCAAAAACAGCTAAAATCT 57.046 36.364 0.00 0.00 0.00 2.40
7582 29302 5.120674 GTGATGCCCAAAAACAGCTAAAATC 59.879 40.000 0.00 0.00 0.00 2.17
7599 29394 5.897377 ACAAAACCTAATGTAGTGATGCC 57.103 39.130 0.00 0.00 0.00 4.40
7728 29535 6.778559 ACCAGAACTCTATCCTATAACTGTCC 59.221 42.308 0.00 0.00 0.00 4.02
7743 29550 6.127026 ACTGTAGAAAAGAACACCAGAACTCT 60.127 38.462 0.00 0.00 0.00 3.24
7793 29600 4.131596 AGCAAAAACTAGGCGACACTAAA 58.868 39.130 0.00 0.00 0.00 1.85
7803 29610 7.169140 GTGGTAATGTTTCAAGCAAAAACTAGG 59.831 37.037 0.00 0.00 37.48 3.02
7817 29624 3.563808 TGACAGCTGTGTGGTAATGTTTC 59.436 43.478 27.27 5.17 36.88 2.78
7833 29640 7.225538 ACAATAGTAGAAATATGTGCTGACAGC 59.774 37.037 20.86 20.86 42.82 4.40
7858 29665 9.943163 GAGATCCATTTCAAAGCTCTTTATAAC 57.057 33.333 0.00 0.00 0.00 1.89
7859 29666 9.911788 AGAGATCCATTTCAAAGCTCTTTATAA 57.088 29.630 0.00 0.00 0.00 0.98
7860 29667 9.911788 AAGAGATCCATTTCAAAGCTCTTTATA 57.088 29.630 0.00 0.00 37.83 0.98
7861 29668 8.820153 AAGAGATCCATTTCAAAGCTCTTTAT 57.180 30.769 0.00 0.00 37.83 1.40
7915 29722 5.741388 AAGCACTATTGACGAATCCAATC 57.259 39.130 0.00 0.00 35.94 2.67
7935 29742 2.128035 GATCGACCAGATTGGCGTAAG 58.872 52.381 0.00 0.00 42.67 2.34
7936 29743 1.754803 AGATCGACCAGATTGGCGTAA 59.245 47.619 0.00 0.00 42.67 3.18
7937 29744 1.399714 AGATCGACCAGATTGGCGTA 58.600 50.000 0.00 1.66 42.67 4.42
7938 29745 1.338337 CTAGATCGACCAGATTGGCGT 59.662 52.381 0.00 1.64 42.67 5.68
7939 29746 1.932604 GCTAGATCGACCAGATTGGCG 60.933 57.143 0.00 0.79 42.67 5.69
7940 29747 1.342819 AGCTAGATCGACCAGATTGGC 59.657 52.381 0.00 0.00 42.67 4.52
7941 29748 3.742433 AAGCTAGATCGACCAGATTGG 57.258 47.619 0.00 0.00 45.02 3.16
7942 29749 4.321601 CCCTAAGCTAGATCGACCAGATTG 60.322 50.000 0.00 0.00 40.26 2.67
7943 29750 3.829601 CCCTAAGCTAGATCGACCAGATT 59.170 47.826 0.00 0.00 40.26 2.40
7944 29751 3.181427 ACCCTAAGCTAGATCGACCAGAT 60.181 47.826 0.00 0.00 43.51 2.90
7945 29752 2.175069 ACCCTAAGCTAGATCGACCAGA 59.825 50.000 0.00 0.00 0.00 3.86
7946 29753 2.588620 ACCCTAAGCTAGATCGACCAG 58.411 52.381 0.00 0.00 0.00 4.00
7947 29754 2.750141 ACCCTAAGCTAGATCGACCA 57.250 50.000 0.00 0.00 0.00 4.02
7948 29755 3.718815 CAAACCCTAAGCTAGATCGACC 58.281 50.000 0.00 0.00 0.00 4.79
7949 29756 3.124560 GCAAACCCTAAGCTAGATCGAC 58.875 50.000 0.00 0.00 0.00 4.20
7950 29757 2.764010 TGCAAACCCTAAGCTAGATCGA 59.236 45.455 0.00 0.00 0.00 3.59
7951 29758 3.179443 TGCAAACCCTAAGCTAGATCG 57.821 47.619 0.00 0.00 0.00 3.69
7952 29759 3.251972 GCATGCAAACCCTAAGCTAGATC 59.748 47.826 14.21 0.00 0.00 2.75
7953 29760 3.117738 AGCATGCAAACCCTAAGCTAGAT 60.118 43.478 21.98 0.00 0.00 1.98
7954 29761 2.239654 AGCATGCAAACCCTAAGCTAGA 59.760 45.455 21.98 0.00 0.00 2.43
7955 29762 2.357009 CAGCATGCAAACCCTAAGCTAG 59.643 50.000 21.98 0.00 0.00 3.42
7956 29763 2.368439 CAGCATGCAAACCCTAAGCTA 58.632 47.619 21.98 0.00 0.00 3.32
7957 29764 1.180029 CAGCATGCAAACCCTAAGCT 58.820 50.000 21.98 0.00 0.00 3.74
7958 29765 3.727419 CAGCATGCAAACCCTAAGC 57.273 52.632 21.98 0.00 0.00 3.09
7970 29777 3.370061 CGGTGATATGACATAGCAGCATG 59.630 47.826 31.05 18.38 46.58 4.06
7971 29778 3.007290 ACGGTGATATGACATAGCAGCAT 59.993 43.478 31.05 20.58 46.58 3.79
7972 29779 2.365293 ACGGTGATATGACATAGCAGCA 59.635 45.455 31.05 12.57 46.58 4.41
7973 29780 3.032017 ACGGTGATATGACATAGCAGC 57.968 47.619 25.64 25.64 43.82 5.25
7974 29781 5.292765 AGAAACGGTGATATGACATAGCAG 58.707 41.667 13.54 6.10 30.91 4.24
7975 29782 5.276461 AGAAACGGTGATATGACATAGCA 57.724 39.130 9.31 9.31 0.00 3.49
7976 29783 5.523916 ACAAGAAACGGTGATATGACATAGC 59.476 40.000 3.70 3.70 0.00 2.97
7977 29784 6.756542 TGACAAGAAACGGTGATATGACATAG 59.243 38.462 0.98 0.00 0.00 2.23
7978 29785 6.635755 TGACAAGAAACGGTGATATGACATA 58.364 36.000 0.00 0.00 0.00 2.29
7979 29786 5.487433 TGACAAGAAACGGTGATATGACAT 58.513 37.500 0.00 0.00 0.00 3.06
7980 29787 4.888917 TGACAAGAAACGGTGATATGACA 58.111 39.130 0.00 0.00 0.00 3.58
7981 29788 5.727791 GCATGACAAGAAACGGTGATATGAC 60.728 44.000 0.00 0.00 0.00 3.06
7982 29789 4.332543 GCATGACAAGAAACGGTGATATGA 59.667 41.667 0.00 0.00 0.00 2.15
7983 29790 4.094739 TGCATGACAAGAAACGGTGATATG 59.905 41.667 0.00 0.00 0.00 1.78
7984 29791 4.260985 TGCATGACAAGAAACGGTGATAT 58.739 39.130 0.00 0.00 0.00 1.63
7985 29792 3.669536 TGCATGACAAGAAACGGTGATA 58.330 40.909 0.00 0.00 0.00 2.15
7986 29793 2.503331 TGCATGACAAGAAACGGTGAT 58.497 42.857 0.00 0.00 0.00 3.06
7987 29794 1.960417 TGCATGACAAGAAACGGTGA 58.040 45.000 0.00 0.00 0.00 4.02
7988 29795 2.226200 TGATGCATGACAAGAAACGGTG 59.774 45.455 2.46 0.00 0.00 4.94
7989 29796 2.485426 CTGATGCATGACAAGAAACGGT 59.515 45.455 2.46 0.00 0.00 4.83
7990 29797 2.485426 ACTGATGCATGACAAGAAACGG 59.515 45.455 2.46 0.00 0.00 4.44
7991 29798 3.818961 ACTGATGCATGACAAGAAACG 57.181 42.857 2.46 0.00 0.00 3.60
7992 29799 8.454106 ACTATTAACTGATGCATGACAAGAAAC 58.546 33.333 2.46 0.00 0.00 2.78
7993 29800 8.565896 ACTATTAACTGATGCATGACAAGAAA 57.434 30.769 2.46 0.00 0.00 2.52
7994 29801 8.565896 AACTATTAACTGATGCATGACAAGAA 57.434 30.769 2.46 0.00 0.00 2.52
7995 29802 8.565896 AAACTATTAACTGATGCATGACAAGA 57.434 30.769 2.46 0.00 0.00 3.02
8016 29823 8.803235 GGAAACAGGAACCAGATTTATTAAACT 58.197 33.333 0.00 0.00 0.00 2.66
8017 29824 8.803235 AGGAAACAGGAACCAGATTTATTAAAC 58.197 33.333 0.00 0.00 0.00 2.01
8018 29825 8.950007 AGGAAACAGGAACCAGATTTATTAAA 57.050 30.769 0.00 0.00 0.00 1.52
8019 29826 8.950007 AAGGAAACAGGAACCAGATTTATTAA 57.050 30.769 0.00 0.00 0.00 1.40
8020 29827 8.950007 AAAGGAAACAGGAACCAGATTTATTA 57.050 30.769 0.00 0.00 0.00 0.98
8021 29828 7.855784 AAAGGAAACAGGAACCAGATTTATT 57.144 32.000 0.00 0.00 0.00 1.40
8022 29829 7.855784 AAAAGGAAACAGGAACCAGATTTAT 57.144 32.000 0.00 0.00 0.00 1.40
8023 29830 8.002459 ACTAAAAGGAAACAGGAACCAGATTTA 58.998 33.333 0.00 0.00 0.00 1.40
8024 29831 6.839134 ACTAAAAGGAAACAGGAACCAGATTT 59.161 34.615 0.00 0.00 0.00 2.17
8025 29832 6.373759 ACTAAAAGGAAACAGGAACCAGATT 58.626 36.000 0.00 0.00 0.00 2.40
8026 29833 5.953571 ACTAAAAGGAAACAGGAACCAGAT 58.046 37.500 0.00 0.00 0.00 2.90
8027 29834 5.382664 ACTAAAAGGAAACAGGAACCAGA 57.617 39.130 0.00 0.00 0.00 3.86
8028 29835 5.472478 GGTACTAAAAGGAAACAGGAACCAG 59.528 44.000 0.00 0.00 0.00 4.00
8029 29836 5.379187 GGTACTAAAAGGAAACAGGAACCA 58.621 41.667 0.00 0.00 0.00 3.67
8030 29837 4.763793 GGGTACTAAAAGGAAACAGGAACC 59.236 45.833 0.00 0.00 0.00 3.62
8031 29838 5.628130 AGGGTACTAAAAGGAAACAGGAAC 58.372 41.667 0.00 0.00 0.00 3.62
8032 29839 5.917545 AGGGTACTAAAAGGAAACAGGAA 57.082 39.130 0.00 0.00 0.00 3.36
8033 29840 5.221986 GGAAGGGTACTAAAAGGAAACAGGA 60.222 44.000 0.00 0.00 0.00 3.86
8034 29841 5.008331 GGAAGGGTACTAAAAGGAAACAGG 58.992 45.833 0.00 0.00 0.00 4.00
8035 29842 4.694037 CGGAAGGGTACTAAAAGGAAACAG 59.306 45.833 0.00 0.00 0.00 3.16
8036 29843 4.644498 CGGAAGGGTACTAAAAGGAAACA 58.356 43.478 0.00 0.00 0.00 2.83
8053 29860 6.816640 TCATGTTCTCAGTAAAATACCGGAAG 59.183 38.462 9.46 0.00 0.00 3.46
8054 29861 6.592607 GTCATGTTCTCAGTAAAATACCGGAA 59.407 38.462 9.46 0.00 0.00 4.30
8055 29862 6.070995 AGTCATGTTCTCAGTAAAATACCGGA 60.071 38.462 9.46 0.00 0.00 5.14
8056 29863 6.036083 CAGTCATGTTCTCAGTAAAATACCGG 59.964 42.308 0.00 0.00 0.00 5.28
8057 29864 6.811665 TCAGTCATGTTCTCAGTAAAATACCG 59.188 38.462 0.00 0.00 0.00 4.02
8058 29865 8.723942 ATCAGTCATGTTCTCAGTAAAATACC 57.276 34.615 0.00 0.00 0.00 2.73
8059 29866 9.979270 CAATCAGTCATGTTCTCAGTAAAATAC 57.021 33.333 0.00 0.00 0.00 1.89
8060 29867 8.668353 GCAATCAGTCATGTTCTCAGTAAAATA 58.332 33.333 0.00 0.00 0.00 1.40
8061 29868 7.362401 GGCAATCAGTCATGTTCTCAGTAAAAT 60.362 37.037 0.00 0.00 0.00 1.82
8062 29869 6.072508 GGCAATCAGTCATGTTCTCAGTAAAA 60.073 38.462 0.00 0.00 0.00 1.52
8063 29870 5.412594 GGCAATCAGTCATGTTCTCAGTAAA 59.587 40.000 0.00 0.00 0.00 2.01
8064 29871 4.937620 GGCAATCAGTCATGTTCTCAGTAA 59.062 41.667 0.00 0.00 0.00 2.24
8065 29872 4.020307 TGGCAATCAGTCATGTTCTCAGTA 60.020 41.667 0.00 0.00 0.00 2.74
8066 29873 3.244665 TGGCAATCAGTCATGTTCTCAGT 60.245 43.478 0.00 0.00 0.00 3.41
8067 29874 3.340928 TGGCAATCAGTCATGTTCTCAG 58.659 45.455 0.00 0.00 0.00 3.35
8068 29875 3.421919 TGGCAATCAGTCATGTTCTCA 57.578 42.857 0.00 0.00 0.00 3.27
8069 29876 4.978083 AATGGCAATCAGTCATGTTCTC 57.022 40.909 0.00 0.00 43.07 2.87
8070 29877 5.475719 CAAAATGGCAATCAGTCATGTTCT 58.524 37.500 0.00 0.00 43.07 3.01
8071 29878 4.628333 CCAAAATGGCAATCAGTCATGTTC 59.372 41.667 0.00 0.00 43.07 3.18
8072 29879 4.571919 CCAAAATGGCAATCAGTCATGTT 58.428 39.130 0.00 0.00 43.07 2.71
8073 29880 4.196626 CCAAAATGGCAATCAGTCATGT 57.803 40.909 0.00 0.00 43.07 3.21
8103 29910 4.439305 TGCAGCTTGACAACAAATATCC 57.561 40.909 0.00 0.00 35.49 2.59
8160 29967 9.762933 TTTTTGAGATAAGAAAATCCCAAGTTG 57.237 29.630 0.00 0.00 27.20 3.16
8234 30041 3.552890 CCGATATGACCGCTGATTTCTCA 60.553 47.826 0.00 0.00 0.00 3.27
8254 30061 9.673874 ACAAGACTGTAAAGGGATCAAGATCCG 62.674 44.444 19.83 9.02 45.27 4.18
8317 30128 2.233676 ACACTAGATGACATGGAACGCA 59.766 45.455 0.00 0.00 0.00 5.24
8343 30154 8.078596 AGTAGCAACATTCTTGACAATTTCTTC 58.921 33.333 0.00 0.00 0.00 2.87
8351 30162 6.691754 TTTGAAGTAGCAACATTCTTGACA 57.308 33.333 0.00 0.00 0.00 3.58
8436 30250 6.356556 CACATCCTACCATTGTTTATCCTCA 58.643 40.000 0.00 0.00 0.00 3.86
8666 30621 9.647679 CATTTCAGAGAAATATGATCTTGAACG 57.352 33.333 4.81 0.00 30.73 3.95
8710 30665 6.873997 TCTAACATCACCAACGACAATATCT 58.126 36.000 0.00 0.00 0.00 1.98
8859 30819 0.177141 AACACCCATGACCGTATCCG 59.823 55.000 0.00 0.00 0.00 4.18
9382 35335 2.832733 AGTAGAAGCCCAGACAGTTACC 59.167 50.000 0.00 0.00 0.00 2.85
9394 35347 4.884164 ACAAGGCAATCATAAGTAGAAGCC 59.116 41.667 0.00 0.00 39.27 4.35
9614 35890 3.302964 TGCGAATCGTATTTGCATTTTGC 59.697 39.130 14.62 0.00 45.29 3.68
9615 35891 4.558470 ACTGCGAATCGTATTTGCATTTTG 59.442 37.500 17.33 11.24 34.66 2.44
9616 35892 4.732784 ACTGCGAATCGTATTTGCATTTT 58.267 34.783 17.33 7.44 34.66 1.82
9617 35893 4.355543 ACTGCGAATCGTATTTGCATTT 57.644 36.364 17.33 9.13 34.66 2.32
9618 35894 4.097714 CAACTGCGAATCGTATTTGCATT 58.902 39.130 17.33 12.04 34.66 3.56
9619 35895 3.487376 CCAACTGCGAATCGTATTTGCAT 60.487 43.478 15.78 6.56 32.88 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.