Multiple sequence alignment - TraesCS5B01G314500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G314500 chr5B 100.000 2666 0 0 1 2666 496805036 496807701 0.000000e+00 4924.0
1 TraesCS5B01G314500 chr5B 92.330 1056 53 9 627 1675 496569061 496570095 0.000000e+00 1476.0
2 TraesCS5B01G314500 chr5B 89.082 1035 84 13 652 1674 496549389 496550406 0.000000e+00 1258.0
3 TraesCS5B01G314500 chr5B 89.333 450 28 12 2235 2666 496570635 496571082 5.020000e-152 547.0
4 TraesCS5B01G314500 chr5B 86.982 169 20 1 1 169 637021290 637021456 3.500000e-44 189.0
5 TraesCS5B01G314500 chr5B 89.610 77 4 1 1772 1848 518079527 518079599 7.860000e-16 95.3
6 TraesCS5B01G314500 chr5B 88.462 78 5 3 1770 1846 324964725 324964799 1.020000e-14 91.6
7 TraesCS5B01G314500 chr5A 92.665 1077 55 5 598 1674 524388888 524389940 0.000000e+00 1530.0
8 TraesCS5B01G314500 chr5A 86.696 1120 93 23 651 1766 524309063 524310130 0.000000e+00 1192.0
9 TraesCS5B01G314500 chr5A 89.738 458 28 9 2227 2666 524390563 524391019 3.850000e-158 568.0
10 TraesCS5B01G314500 chr5A 90.959 365 27 4 2308 2666 524317623 524317987 1.110000e-133 486.0
11 TraesCS5B01G314500 chr5A 90.798 326 16 5 1957 2279 524312051 524312365 8.820000e-115 424.0
12 TraesCS5B01G314500 chr5A 82.658 444 30 20 183 602 524385427 524385847 1.520000e-92 350.0
13 TraesCS5B01G314500 chr5A 82.090 134 17 6 52 182 479318481 479318610 1.010000e-19 108.0
14 TraesCS5B01G314500 chr5A 97.500 40 0 1 1880 1918 524310162 524310201 1.710000e-07 67.6
15 TraesCS5B01G314500 chr5D 89.702 1039 76 13 651 1674 412448463 412449485 0.000000e+00 1297.0
16 TraesCS5B01G314500 chr5D 90.330 455 25 9 2227 2666 412449888 412450338 1.780000e-161 579.0
17 TraesCS5B01G314500 chr4A 80.825 970 148 19 719 1669 601177938 601178888 0.000000e+00 726.0
18 TraesCS5B01G314500 chr4A 81.955 665 83 22 1000 1662 601194762 601194133 1.820000e-146 529.0
19 TraesCS5B01G314500 chrUn 80.309 970 139 26 719 1669 60943090 60944026 0.000000e+00 686.0
20 TraesCS5B01G314500 chrUn 78.562 765 132 21 921 1681 60935620 60936356 2.400000e-130 475.0
21 TraesCS5B01G314500 chrUn 80.147 136 20 4 52 184 70678447 70678578 7.860000e-16 95.3
22 TraesCS5B01G314500 chr4B 79.550 978 150 20 719 1669 5531714 5532668 0.000000e+00 652.0
23 TraesCS5B01G314500 chr4B 82.406 665 83 19 1000 1662 5534367 5533735 1.400000e-152 549.0
24 TraesCS5B01G314500 chr1A 89.944 179 15 2 1 179 549228742 549228917 7.420000e-56 228.0
25 TraesCS5B01G314500 chr7D 90.173 173 11 4 9 179 17242890 17243058 1.240000e-53 220.0
26 TraesCS5B01G314500 chr7D 85.393 178 22 4 4 180 267563272 267563098 5.860000e-42 182.0
27 TraesCS5B01G314500 chr7D 79.651 172 31 4 9 179 348992613 348992445 1.300000e-23 121.0
28 TraesCS5B01G314500 chr3B 83.152 184 23 7 5 185 642871950 642871772 7.640000e-36 161.0
29 TraesCS5B01G314500 chr3B 80.147 136 17 9 55 185 669419194 669419064 2.830000e-15 93.5
30 TraesCS5B01G314500 chr2A 92.857 70 5 0 1778 1847 658150139 658150070 4.700000e-18 102.0
31 TraesCS5B01G314500 chr3D 91.781 73 4 2 1775 1846 555598316 555598245 1.690000e-17 100.0
32 TraesCS5B01G314500 chr3D 87.500 72 9 0 1775 1846 531284847 531284918 1.700000e-12 84.2
33 TraesCS5B01G314500 chr1D 89.744 78 8 0 1775 1852 430101715 430101792 1.690000e-17 100.0
34 TraesCS5B01G314500 chr6D 90.411 73 7 0 1776 1848 371666863 371666935 2.180000e-16 97.1
35 TraesCS5B01G314500 chr7B 89.610 77 4 2 1774 1846 202105442 202105518 7.860000e-16 95.3
36 TraesCS5B01G314500 chr6B 89.041 73 5 3 1776 1846 668427425 668427354 1.310000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G314500 chr5B 496805036 496807701 2665 False 4924.0 4924 100.000000 1 2666 1 chr5B.!!$F3 2665
1 TraesCS5B01G314500 chr5B 496549389 496550406 1017 False 1258.0 1258 89.082000 652 1674 1 chr5B.!!$F2 1022
2 TraesCS5B01G314500 chr5B 496569061 496571082 2021 False 1011.5 1476 90.831500 627 2666 2 chr5B.!!$F6 2039
3 TraesCS5B01G314500 chr5A 524385427 524391019 5592 False 816.0 1530 88.353667 183 2666 3 chr5A.!!$F4 2483
4 TraesCS5B01G314500 chr5A 524309063 524312365 3302 False 561.2 1192 91.664667 651 2279 3 chr5A.!!$F3 1628
5 TraesCS5B01G314500 chr5D 412448463 412450338 1875 False 938.0 1297 90.016000 651 2666 2 chr5D.!!$F1 2015
6 TraesCS5B01G314500 chr4A 601177938 601178888 950 False 726.0 726 80.825000 719 1669 1 chr4A.!!$F1 950
7 TraesCS5B01G314500 chr4A 601194133 601194762 629 True 529.0 529 81.955000 1000 1662 1 chr4A.!!$R1 662
8 TraesCS5B01G314500 chrUn 60943090 60944026 936 False 686.0 686 80.309000 719 1669 1 chrUn.!!$F2 950
9 TraesCS5B01G314500 chrUn 60935620 60936356 736 False 475.0 475 78.562000 921 1681 1 chrUn.!!$F1 760
10 TraesCS5B01G314500 chr4B 5531714 5532668 954 False 652.0 652 79.550000 719 1669 1 chr4B.!!$F1 950
11 TraesCS5B01G314500 chr4B 5533735 5534367 632 True 549.0 549 82.406000 1000 1662 1 chr4B.!!$R1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 289 0.099436 GTGCCTCAAATCATCGCCAC 59.901 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1685 4865 0.040336 ATAGCCGCGTCGATACACTG 60.04 55.0 4.92 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.082523 ACTCGGGATGGCCGTGTG 62.083 66.667 0.00 0.00 36.33 3.82
18 19 4.838152 CTCGGGATGGCCGTGTGG 62.838 72.222 0.00 0.00 38.77 4.17
28 29 2.746277 CCGTGTGGCCCACTTAGC 60.746 66.667 16.23 2.08 42.20 3.09
29 30 2.031919 CGTGTGGCCCACTTAGCA 59.968 61.111 16.23 0.00 42.20 3.49
30 31 2.034879 CGTGTGGCCCACTTAGCAG 61.035 63.158 16.23 0.00 42.20 4.24
31 32 1.073199 GTGTGGCCCACTTAGCAGT 59.927 57.895 16.23 0.00 41.11 4.40
32 33 0.323629 GTGTGGCCCACTTAGCAGTA 59.676 55.000 16.23 0.00 41.11 2.74
33 34 0.613260 TGTGGCCCACTTAGCAGTAG 59.387 55.000 16.23 0.00 35.11 2.57
34 35 0.744771 GTGGCCCACTTAGCAGTAGC 60.745 60.000 6.63 0.00 42.56 3.58
45 46 4.087892 CAGTAGCGCCTGGCCAGT 62.088 66.667 30.63 15.23 45.17 4.00
46 47 4.087892 AGTAGCGCCTGGCCAGTG 62.088 66.667 30.63 22.84 45.17 3.66
47 48 4.082523 GTAGCGCCTGGCCAGTGA 62.083 66.667 30.63 8.51 45.17 3.41
48 49 3.774528 TAGCGCCTGGCCAGTGAG 61.775 66.667 30.63 22.86 45.17 3.51
53 54 3.699894 CCTGGCCAGTGAGAGCGT 61.700 66.667 30.63 0.00 0.00 5.07
54 55 2.433838 CTGGCCAGTGAGAGCGTG 60.434 66.667 25.53 0.00 0.00 5.34
55 56 4.687215 TGGCCAGTGAGAGCGTGC 62.687 66.667 0.00 0.00 0.00 5.34
56 57 4.385405 GGCCAGTGAGAGCGTGCT 62.385 66.667 0.00 0.00 0.00 4.40
57 58 2.573869 GCCAGTGAGAGCGTGCTA 59.426 61.111 0.00 0.00 0.00 3.49
58 59 1.807573 GCCAGTGAGAGCGTGCTAC 60.808 63.158 0.00 0.00 0.00 3.58
59 60 1.886585 CCAGTGAGAGCGTGCTACT 59.113 57.895 0.00 0.00 0.00 2.57
60 61 0.457509 CCAGTGAGAGCGTGCTACTG 60.458 60.000 13.73 13.73 38.70 2.74
61 62 1.075425 CAGTGAGAGCGTGCTACTGC 61.075 60.000 9.57 0.00 40.20 4.40
62 63 1.214062 GTGAGAGCGTGCTACTGCT 59.786 57.895 0.00 0.00 45.90 4.24
63 64 0.452184 GTGAGAGCGTGCTACTGCTA 59.548 55.000 0.00 0.00 42.60 3.49
64 65 1.135373 GTGAGAGCGTGCTACTGCTAA 60.135 52.381 0.00 0.00 42.60 3.09
65 66 1.133216 TGAGAGCGTGCTACTGCTAAG 59.867 52.381 0.00 0.00 42.60 2.18
66 67 1.133407 GAGAGCGTGCTACTGCTAAGT 59.867 52.381 0.00 0.00 42.60 2.24
67 68 2.355132 GAGAGCGTGCTACTGCTAAGTA 59.645 50.000 0.00 0.00 42.60 2.24
68 69 2.952978 AGAGCGTGCTACTGCTAAGTAT 59.047 45.455 0.00 0.00 42.60 2.12
69 70 3.381908 AGAGCGTGCTACTGCTAAGTATT 59.618 43.478 0.00 0.00 42.60 1.89
70 71 4.579340 AGAGCGTGCTACTGCTAAGTATTA 59.421 41.667 0.00 0.00 42.60 0.98
71 72 4.608951 AGCGTGCTACTGCTAAGTATTAC 58.391 43.478 0.00 0.00 40.28 1.89
72 73 3.734735 GCGTGCTACTGCTAAGTATTACC 59.265 47.826 0.00 0.00 38.23 2.85
73 74 4.499357 GCGTGCTACTGCTAAGTATTACCT 60.499 45.833 0.00 0.00 38.23 3.08
74 75 4.976731 CGTGCTACTGCTAAGTATTACCTG 59.023 45.833 0.00 0.00 38.23 4.00
75 76 5.450137 CGTGCTACTGCTAAGTATTACCTGT 60.450 44.000 0.00 0.00 38.23 4.00
76 77 6.238566 CGTGCTACTGCTAAGTATTACCTGTA 60.239 42.308 0.00 0.00 38.23 2.74
77 78 7.140048 GTGCTACTGCTAAGTATTACCTGTAG 58.860 42.308 0.00 0.00 39.58 2.74
78 79 6.151004 GCTACTGCTAAGTATTACCTGTAGC 58.849 44.000 16.34 16.34 46.93 3.58
79 80 5.184340 ACTGCTAAGTATTACCTGTAGCG 57.816 43.478 13.09 11.12 40.03 4.26
80 81 3.973657 TGCTAAGTATTACCTGTAGCGC 58.026 45.455 0.00 0.00 40.03 5.92
81 82 2.978489 GCTAAGTATTACCTGTAGCGCG 59.022 50.000 0.00 0.00 0.00 6.86
82 83 3.549625 GCTAAGTATTACCTGTAGCGCGT 60.550 47.826 8.43 0.00 0.00 6.01
83 84 2.770699 AGTATTACCTGTAGCGCGTC 57.229 50.000 8.43 0.00 0.00 5.19
84 85 1.336125 AGTATTACCTGTAGCGCGTCC 59.664 52.381 8.43 0.00 0.00 4.79
85 86 1.336125 GTATTACCTGTAGCGCGTCCT 59.664 52.381 8.43 0.00 0.00 3.85
86 87 0.384669 ATTACCTGTAGCGCGTCCTC 59.615 55.000 8.43 0.00 0.00 3.71
87 88 0.679002 TTACCTGTAGCGCGTCCTCT 60.679 55.000 8.43 0.00 0.00 3.69
88 89 0.679002 TACCTGTAGCGCGTCCTCTT 60.679 55.000 8.43 0.00 0.00 2.85
89 90 1.215647 CCTGTAGCGCGTCCTCTTT 59.784 57.895 8.43 0.00 0.00 2.52
90 91 0.454600 CCTGTAGCGCGTCCTCTTTA 59.545 55.000 8.43 0.00 0.00 1.85
91 92 1.546834 CTGTAGCGCGTCCTCTTTAC 58.453 55.000 8.43 0.00 0.00 2.01
92 93 0.171903 TGTAGCGCGTCCTCTTTACC 59.828 55.000 8.43 0.00 0.00 2.85
93 94 0.455005 GTAGCGCGTCCTCTTTACCT 59.545 55.000 8.43 0.00 0.00 3.08
94 95 0.454600 TAGCGCGTCCTCTTTACCTG 59.545 55.000 8.43 0.00 0.00 4.00
95 96 2.453638 GCGCGTCCTCTTTACCTGC 61.454 63.158 8.43 0.00 0.00 4.85
96 97 2.158959 CGCGTCCTCTTTACCTGCG 61.159 63.158 0.00 0.00 38.04 5.18
97 98 2.453638 GCGTCCTCTTTACCTGCGC 61.454 63.158 0.00 0.00 36.75 6.09
98 99 1.215647 CGTCCTCTTTACCTGCGCT 59.784 57.895 9.73 0.00 0.00 5.92
99 100 1.078759 CGTCCTCTTTACCTGCGCTG 61.079 60.000 9.73 8.47 0.00 5.18
100 101 1.079127 TCCTCTTTACCTGCGCTGC 60.079 57.895 9.73 0.00 0.00 5.25
101 102 1.078848 CCTCTTTACCTGCGCTGCT 60.079 57.895 9.73 0.00 0.00 4.24
102 103 1.364626 CCTCTTTACCTGCGCTGCTG 61.365 60.000 9.73 0.00 0.00 4.41
103 104 1.975363 CTCTTTACCTGCGCTGCTGC 61.975 60.000 9.73 5.34 0.00 5.25
104 105 2.032528 TTTACCTGCGCTGCTGCT 59.967 55.556 9.73 0.00 36.97 4.24
105 106 0.740868 CTTTACCTGCGCTGCTGCTA 60.741 55.000 9.73 1.85 36.97 3.49
106 107 0.740868 TTTACCTGCGCTGCTGCTAG 60.741 55.000 9.73 11.11 36.97 3.42
107 108 1.888436 TTACCTGCGCTGCTGCTAGT 61.888 55.000 9.73 13.90 36.97 2.57
108 109 1.888436 TACCTGCGCTGCTGCTAGTT 61.888 55.000 9.73 3.38 36.97 2.24
109 110 1.153568 CCTGCGCTGCTGCTAGTTA 60.154 57.895 9.73 0.00 36.97 2.24
110 111 1.150567 CCTGCGCTGCTGCTAGTTAG 61.151 60.000 9.73 4.61 36.97 2.34
128 129 2.809601 CAGTAGCGCGCGTCCTTT 60.810 61.111 32.35 9.81 0.00 3.11
129 130 2.048503 AGTAGCGCGCGTCCTTTT 60.049 55.556 32.35 8.96 0.00 2.27
130 131 2.095843 GTAGCGCGCGTCCTTTTG 59.904 61.111 32.35 0.04 0.00 2.44
131 132 2.048970 TAGCGCGCGTCCTTTTGA 60.049 55.556 32.35 2.39 0.00 2.69
132 133 2.377310 TAGCGCGCGTCCTTTTGAC 61.377 57.895 32.35 11.09 40.81 3.18
133 134 4.007940 GCGCGCGTCCTTTTGACA 62.008 61.111 32.35 0.00 44.71 3.58
134 135 2.629210 CGCGCGTCCTTTTGACAA 59.371 55.556 24.19 0.00 44.71 3.18
135 136 1.438710 CGCGCGTCCTTTTGACAAG 60.439 57.895 24.19 0.00 44.71 3.16
136 137 1.725973 GCGCGTCCTTTTGACAAGC 60.726 57.895 8.43 0.00 44.71 4.01
137 138 1.438710 CGCGTCCTTTTGACAAGCG 60.439 57.895 0.00 3.33 44.71 4.68
138 139 1.725973 GCGTCCTTTTGACAAGCGC 60.726 57.895 0.00 0.00 44.71 5.92
139 140 1.941812 CGTCCTTTTGACAAGCGCT 59.058 52.632 2.64 2.64 44.71 5.92
140 141 1.144969 CGTCCTTTTGACAAGCGCTA 58.855 50.000 12.05 0.00 44.71 4.26
141 142 1.136336 CGTCCTTTTGACAAGCGCTAC 60.136 52.381 12.05 6.26 44.71 3.58
142 143 2.143925 GTCCTTTTGACAAGCGCTACT 58.856 47.619 12.05 0.00 43.85 2.57
143 144 2.096218 GTCCTTTTGACAAGCGCTACTG 60.096 50.000 12.05 9.38 43.85 2.74
144 145 2.143122 CCTTTTGACAAGCGCTACTGA 58.857 47.619 12.05 0.00 0.00 3.41
145 146 2.744202 CCTTTTGACAAGCGCTACTGAT 59.256 45.455 12.05 0.00 0.00 2.90
146 147 3.932710 CCTTTTGACAAGCGCTACTGATA 59.067 43.478 12.05 0.00 0.00 2.15
147 148 4.391830 CCTTTTGACAAGCGCTACTGATAA 59.608 41.667 12.05 4.58 0.00 1.75
148 149 5.065218 CCTTTTGACAAGCGCTACTGATAAT 59.935 40.000 12.05 0.00 0.00 1.28
149 150 5.469373 TTTGACAAGCGCTACTGATAATG 57.531 39.130 12.05 4.89 0.00 1.90
150 151 2.866156 TGACAAGCGCTACTGATAATGC 59.134 45.455 12.05 0.00 0.00 3.56
151 152 3.126831 GACAAGCGCTACTGATAATGCT 58.873 45.455 12.05 0.00 0.00 3.79
152 153 3.126831 ACAAGCGCTACTGATAATGCTC 58.873 45.455 12.05 0.00 0.00 4.26
153 154 2.447244 AGCGCTACTGATAATGCTCC 57.553 50.000 8.99 0.00 0.00 4.70
154 155 1.063806 GCGCTACTGATAATGCTCCG 58.936 55.000 0.00 0.00 0.00 4.63
155 156 1.603172 GCGCTACTGATAATGCTCCGT 60.603 52.381 0.00 0.00 0.00 4.69
156 157 2.054363 CGCTACTGATAATGCTCCGTG 58.946 52.381 0.00 0.00 0.00 4.94
157 158 2.543861 CGCTACTGATAATGCTCCGTGT 60.544 50.000 0.00 0.00 0.00 4.49
158 159 3.304458 CGCTACTGATAATGCTCCGTGTA 60.304 47.826 0.00 0.00 0.00 2.90
159 160 4.616143 CGCTACTGATAATGCTCCGTGTAT 60.616 45.833 0.00 0.00 0.00 2.29
160 161 5.391629 CGCTACTGATAATGCTCCGTGTATA 60.392 44.000 0.00 0.00 0.00 1.47
161 162 6.387465 GCTACTGATAATGCTCCGTGTATAA 58.613 40.000 0.00 0.00 0.00 0.98
162 163 6.528423 GCTACTGATAATGCTCCGTGTATAAG 59.472 42.308 0.00 0.00 0.00 1.73
163 164 5.784177 ACTGATAATGCTCCGTGTATAAGG 58.216 41.667 0.00 0.00 0.00 2.69
164 165 5.304614 ACTGATAATGCTCCGTGTATAAGGT 59.695 40.000 0.00 0.00 0.00 3.50
165 166 6.169557 TGATAATGCTCCGTGTATAAGGTT 57.830 37.500 0.00 0.00 0.00 3.50
166 167 6.588204 TGATAATGCTCCGTGTATAAGGTTT 58.412 36.000 0.00 0.00 0.00 3.27
167 168 7.051623 TGATAATGCTCCGTGTATAAGGTTTT 58.948 34.615 0.00 0.00 0.00 2.43
168 169 5.813080 AATGCTCCGTGTATAAGGTTTTC 57.187 39.130 0.00 0.00 0.00 2.29
169 170 3.602483 TGCTCCGTGTATAAGGTTTTCC 58.398 45.455 0.00 0.00 41.05 3.13
170 171 2.941064 GCTCCGTGTATAAGGTTTTCCC 59.059 50.000 0.00 0.00 41.86 3.97
172 173 4.141869 GCTCCGTGTATAAGGTTTTCCCTA 60.142 45.833 0.00 0.00 45.47 3.53
173 174 5.598769 CTCCGTGTATAAGGTTTTCCCTAG 58.401 45.833 0.00 0.00 45.47 3.02
174 175 5.025453 TCCGTGTATAAGGTTTTCCCTAGT 58.975 41.667 0.00 0.00 45.47 2.57
175 176 6.194235 TCCGTGTATAAGGTTTTCCCTAGTA 58.806 40.000 0.00 0.00 45.47 1.82
176 177 6.322201 TCCGTGTATAAGGTTTTCCCTAGTAG 59.678 42.308 0.00 0.00 45.47 2.57
177 178 6.097412 CCGTGTATAAGGTTTTCCCTAGTAGT 59.903 42.308 0.00 0.00 45.47 2.73
178 179 6.976925 CGTGTATAAGGTTTTCCCTAGTAGTG 59.023 42.308 0.00 0.00 45.47 2.74
179 180 7.363268 CGTGTATAAGGTTTTCCCTAGTAGTGT 60.363 40.741 0.00 0.00 45.47 3.55
180 181 7.763071 GTGTATAAGGTTTTCCCTAGTAGTGTG 59.237 40.741 0.00 0.00 45.47 3.82
181 182 7.675195 TGTATAAGGTTTTCCCTAGTAGTGTGA 59.325 37.037 0.00 0.00 45.47 3.58
186 187 5.341617 GTTTTCCCTAGTAGTGTGAGATCG 58.658 45.833 0.00 0.00 0.00 3.69
192 193 1.135373 AGTAGTGTGAGATCGCAACCG 60.135 52.381 0.00 0.00 38.19 4.44
222 225 2.105128 CACCAGAGATCGCCGGTC 59.895 66.667 1.90 0.00 0.00 4.79
244 247 0.461163 GCCAAAAACACCACCACCAC 60.461 55.000 0.00 0.00 0.00 4.16
245 248 1.190643 CCAAAAACACCACCACCACT 58.809 50.000 0.00 0.00 0.00 4.00
246 249 2.379972 CCAAAAACACCACCACCACTA 58.620 47.619 0.00 0.00 0.00 2.74
247 250 2.100087 CCAAAAACACCACCACCACTAC 59.900 50.000 0.00 0.00 0.00 2.73
263 266 6.283694 CACCACTACTGTTGCATAGTCATAT 58.716 40.000 7.34 0.00 28.91 1.78
278 281 8.249327 CATAGTCATATACTGTGCCTCAAATC 57.751 38.462 0.00 0.00 39.99 2.17
279 282 6.239217 AGTCATATACTGTGCCTCAAATCA 57.761 37.500 0.00 0.00 36.93 2.57
283 286 1.089920 ACTGTGCCTCAAATCATCGC 58.910 50.000 0.00 0.00 0.00 4.58
285 288 0.322366 TGTGCCTCAAATCATCGCCA 60.322 50.000 0.00 0.00 0.00 5.69
286 289 0.099436 GTGCCTCAAATCATCGCCAC 59.901 55.000 0.00 0.00 0.00 5.01
287 290 0.322366 TGCCTCAAATCATCGCCACA 60.322 50.000 0.00 0.00 0.00 4.17
289 292 1.202222 GCCTCAAATCATCGCCACAAG 60.202 52.381 0.00 0.00 0.00 3.16
290 293 2.086869 CCTCAAATCATCGCCACAAGT 58.913 47.619 0.00 0.00 0.00 3.16
291 294 2.096496 CCTCAAATCATCGCCACAAGTC 59.904 50.000 0.00 0.00 0.00 3.01
292 295 2.743664 CTCAAATCATCGCCACAAGTCA 59.256 45.455 0.00 0.00 0.00 3.41
293 296 3.346315 TCAAATCATCGCCACAAGTCAT 58.654 40.909 0.00 0.00 0.00 3.06
294 297 3.374988 TCAAATCATCGCCACAAGTCATC 59.625 43.478 0.00 0.00 0.00 2.92
295 298 1.575244 ATCATCGCCACAAGTCATCG 58.425 50.000 0.00 0.00 0.00 3.84
296 299 0.246360 TCATCGCCACAAGTCATCGT 59.754 50.000 0.00 0.00 0.00 3.73
297 300 0.647410 CATCGCCACAAGTCATCGTC 59.353 55.000 0.00 0.00 0.00 4.20
298 301 0.532573 ATCGCCACAAGTCATCGTCT 59.467 50.000 0.00 0.00 0.00 4.18
299 302 0.388520 TCGCCACAAGTCATCGTCTG 60.389 55.000 0.00 0.00 0.00 3.51
300 303 0.667487 CGCCACAAGTCATCGTCTGT 60.667 55.000 0.00 0.00 0.00 3.41
301 304 1.402325 CGCCACAAGTCATCGTCTGTA 60.402 52.381 0.00 0.00 0.00 2.74
302 305 2.263077 GCCACAAGTCATCGTCTGTAG 58.737 52.381 0.00 0.00 0.00 2.74
342 345 1.611519 GGAGAGTAGAGACATCCCCG 58.388 60.000 0.00 0.00 30.85 5.73
345 348 1.797211 GAGTAGAGACATCCCCGCCG 61.797 65.000 0.00 0.00 0.00 6.46
367 380 1.218316 CCAGTGTCGGGACTTAGCC 59.782 63.158 0.00 0.00 0.00 3.93
428 449 4.208686 GGTAGGAGGCGGCGACTG 62.209 72.222 25.55 0.00 0.00 3.51
437 458 4.717629 CGGCGACTGTGCGGAAGA 62.718 66.667 0.00 0.00 37.37 2.87
442 463 1.587043 CGACTGTGCGGAAGAGAGGA 61.587 60.000 0.00 0.00 0.00 3.71
445 466 1.110442 CTGTGCGGAAGAGAGGAGAT 58.890 55.000 0.00 0.00 0.00 2.75
456 477 1.227002 GAGGAGATGGACCGCGTTC 60.227 63.158 4.92 0.00 0.00 3.95
460 481 0.802607 GAGATGGACCGCGTTCAGAC 60.803 60.000 5.87 0.00 0.00 3.51
461 482 1.080093 GATGGACCGCGTTCAGACA 60.080 57.895 5.87 0.00 0.00 3.41
462 483 0.669318 GATGGACCGCGTTCAGACAA 60.669 55.000 5.87 0.00 0.00 3.18
463 484 0.670546 ATGGACCGCGTTCAGACAAG 60.671 55.000 5.87 0.00 0.00 3.16
464 485 1.006571 GGACCGCGTTCAGACAAGA 60.007 57.895 5.87 0.00 0.00 3.02
465 486 1.282930 GGACCGCGTTCAGACAAGAC 61.283 60.000 5.87 0.00 0.00 3.01
472 493 3.575630 GCGTTCAGACAAGACAGATACA 58.424 45.455 0.00 0.00 0.00 2.29
480 501 5.353400 CAGACAAGACAGATACAATGCACAT 59.647 40.000 0.00 0.00 0.00 3.21
585 610 7.809331 ACAATTTGATGCAGTGTTACATACTTG 59.191 33.333 2.79 0.00 0.00 3.16
588 613 4.392754 TGATGCAGTGTTACATACTTGCAG 59.607 41.667 16.79 0.00 44.85 4.41
590 615 2.159517 GCAGTGTTACATACTTGCAGGC 60.160 50.000 0.00 0.00 37.71 4.85
592 617 3.372206 CAGTGTTACATACTTGCAGGCTC 59.628 47.826 0.00 0.00 0.00 4.70
597 622 2.440409 ACATACTTGCAGGCTCTTTGG 58.560 47.619 0.00 0.00 0.00 3.28
598 623 2.224867 ACATACTTGCAGGCTCTTTGGT 60.225 45.455 0.00 0.00 0.00 3.67
599 624 1.896220 TACTTGCAGGCTCTTTGGTG 58.104 50.000 0.00 0.00 0.00 4.17
649 3718 4.106197 GTTGAGAGTGATCGATACACACC 58.894 47.826 21.81 15.53 40.25 4.16
774 3851 3.942115 GGCCAGTTAATTCTTCCTCAGAC 59.058 47.826 0.00 0.00 0.00 3.51
794 3871 4.271687 GACGTGTGTCAAACTGTCAATTC 58.728 43.478 0.00 0.00 44.82 2.17
902 3997 7.827819 TCCTCTTCTGTATAAATTGACAACG 57.172 36.000 0.00 0.00 0.00 4.10
938 4033 2.074576 CATCTTCACCACAGCTCACAG 58.925 52.381 0.00 0.00 0.00 3.66
1205 4322 1.744522 CATGAACATGACCATGCCGAA 59.255 47.619 15.25 0.00 42.39 4.30
1209 4326 2.514592 ATGACCATGCCGAAGCCG 60.515 61.111 0.00 0.00 38.69 5.52
1210 4327 3.030168 ATGACCATGCCGAAGCCGA 62.030 57.895 0.00 0.00 38.69 5.54
1211 4328 2.203070 GACCATGCCGAAGCCGAT 60.203 61.111 0.00 0.00 38.69 4.18
1212 4329 2.514592 ACCATGCCGAAGCCGATG 60.515 61.111 0.00 0.00 38.69 3.84
1213 4330 3.957535 CCATGCCGAAGCCGATGC 61.958 66.667 0.00 0.00 38.69 3.91
1214 4331 3.957535 CATGCCGAAGCCGATGCC 61.958 66.667 0.00 0.00 38.69 4.40
1245 4389 1.227823 CTTCACGGTGACCAAGGCA 60.228 57.895 10.97 0.00 0.00 4.75
1305 4449 1.742411 GCCTACGCCATGCTCAAGTTA 60.742 52.381 0.00 0.00 0.00 2.24
1418 4562 2.190578 GGCCGGCAAGCTCTACAT 59.809 61.111 30.85 0.00 0.00 2.29
1620 4764 2.526873 AAGACCGACCTGCCCACT 60.527 61.111 0.00 0.00 0.00 4.00
1684 4864 5.498393 AGTGATTCATGTGCTCTTCTTCAT 58.502 37.500 0.00 0.00 0.00 2.57
1685 4865 5.585445 AGTGATTCATGTGCTCTTCTTCATC 59.415 40.000 0.00 0.00 0.00 2.92
1686 4866 5.353400 GTGATTCATGTGCTCTTCTTCATCA 59.647 40.000 0.00 0.00 0.00 3.07
1687 4867 5.585047 TGATTCATGTGCTCTTCTTCATCAG 59.415 40.000 0.00 0.00 0.00 2.90
1688 4868 4.548451 TCATGTGCTCTTCTTCATCAGT 57.452 40.909 0.00 0.00 0.00 3.41
1689 4869 4.251268 TCATGTGCTCTTCTTCATCAGTG 58.749 43.478 0.00 0.00 0.00 3.66
1690 4870 3.758755 TGTGCTCTTCTTCATCAGTGT 57.241 42.857 0.00 0.00 0.00 3.55
1691 4871 4.871933 TGTGCTCTTCTTCATCAGTGTA 57.128 40.909 0.00 0.00 0.00 2.90
1692 4872 5.411831 TGTGCTCTTCTTCATCAGTGTAT 57.588 39.130 0.00 0.00 0.00 2.29
1693 4873 5.414360 TGTGCTCTTCTTCATCAGTGTATC 58.586 41.667 0.00 0.00 0.00 2.24
1694 4874 4.502282 GTGCTCTTCTTCATCAGTGTATCG 59.498 45.833 0.00 0.00 0.00 2.92
1695 4875 4.399303 TGCTCTTCTTCATCAGTGTATCGA 59.601 41.667 0.00 0.00 0.00 3.59
1699 4879 1.775770 CTTCATCAGTGTATCGACGCG 59.224 52.381 3.53 3.53 41.20 6.01
1768 4950 1.374252 CGCCGCCAAGTAGACACTT 60.374 57.895 0.00 0.00 46.15 3.16
1770 4952 1.356938 GCCGCCAAGTAGACACTTAC 58.643 55.000 0.00 0.00 43.30 2.34
1773 4967 3.767278 CCGCCAAGTAGACACTTACTAC 58.233 50.000 0.00 0.00 43.30 2.73
1786 4980 4.471386 ACACTTACTACTACTCCCTCCGTA 59.529 45.833 0.00 0.00 0.00 4.02
1787 4981 5.045578 ACACTTACTACTACTCCCTCCGTAA 60.046 44.000 0.00 0.00 0.00 3.18
1788 4982 5.882557 CACTTACTACTACTCCCTCCGTAAA 59.117 44.000 0.00 0.00 0.00 2.01
1789 4983 5.883115 ACTTACTACTACTCCCTCCGTAAAC 59.117 44.000 0.00 0.00 0.00 2.01
1795 4989 5.136105 ACTACTCCCTCCGTAAACGAATAT 58.864 41.667 3.65 0.00 43.02 1.28
1796 4990 6.299141 ACTACTCCCTCCGTAAACGAATATA 58.701 40.000 3.65 0.00 43.02 0.86
1797 4991 6.772716 ACTACTCCCTCCGTAAACGAATATAA 59.227 38.462 3.65 0.00 43.02 0.98
1799 4993 5.829924 ACTCCCTCCGTAAACGAATATAAGA 59.170 40.000 3.65 0.00 43.02 2.10
1800 4994 6.016443 ACTCCCTCCGTAAACGAATATAAGAG 60.016 42.308 3.65 0.39 43.02 2.85
1802 4996 4.615961 CCTCCGTAAACGAATATAAGAGCG 59.384 45.833 3.65 0.00 43.02 5.03
1812 5006 7.854934 ACGAATATAAGAGCGTTTAGATCAC 57.145 36.000 0.00 0.00 37.82 3.06
1814 5008 8.781196 ACGAATATAAGAGCGTTTAGATCACTA 58.219 33.333 0.00 0.00 37.82 2.74
1877 5166 4.517285 AGTATATGCTTGTTGTGGGTGAG 58.483 43.478 0.00 0.00 0.00 3.51
1911 5204 7.432059 TGTGATTGTGCTGATGTGAAATTTTA 58.568 30.769 0.00 0.00 0.00 1.52
1912 5205 8.089597 TGTGATTGTGCTGATGTGAAATTTTAT 58.910 29.630 0.00 0.00 0.00 1.40
1913 5206 8.589629 GTGATTGTGCTGATGTGAAATTTTATC 58.410 33.333 0.00 0.00 0.00 1.75
1916 5209 7.451501 TGTGCTGATGTGAAATTTTATCTGA 57.548 32.000 15.49 0.00 0.00 3.27
1917 5210 8.058667 TGTGCTGATGTGAAATTTTATCTGAT 57.941 30.769 15.49 0.00 0.00 2.90
1918 5211 8.186163 TGTGCTGATGTGAAATTTTATCTGATC 58.814 33.333 15.49 0.00 0.00 2.92
1919 5212 7.646922 GTGCTGATGTGAAATTTTATCTGATCC 59.353 37.037 15.49 5.46 0.00 3.36
1920 5213 7.339976 TGCTGATGTGAAATTTTATCTGATCCA 59.660 33.333 15.49 7.03 0.00 3.41
1921 5214 7.861372 GCTGATGTGAAATTTTATCTGATCCAG 59.139 37.037 15.49 0.00 0.00 3.86
1929 5254 8.655935 AAATTTTATCTGATCCAGGAAGTTGT 57.344 30.769 0.00 0.00 31.51 3.32
1936 5261 5.089970 TGATCCAGGAAGTTGTACATCTG 57.910 43.478 7.21 5.69 0.00 2.90
1938 5263 4.537135 TCCAGGAAGTTGTACATCTGTC 57.463 45.455 7.21 7.21 0.00 3.51
1954 5279 7.984422 ACATCTGTCTGTTTATTTGATGTGA 57.016 32.000 0.00 0.00 40.64 3.58
1962 5287 6.313658 TCTGTTTATTTGATGTGAGGTCGATG 59.686 38.462 0.00 0.00 0.00 3.84
1989 7094 4.183865 CGGATGCTCATGTCAAAGAACTA 58.816 43.478 0.00 0.00 0.00 2.24
1990 7095 4.033358 CGGATGCTCATGTCAAAGAACTAC 59.967 45.833 0.00 0.00 0.00 2.73
1998 7103 3.381045 TGTCAAAGAACTACAGACGCAG 58.619 45.455 0.00 0.00 32.08 5.18
2065 7186 1.460743 ACATGAATCACACAAGTCGCG 59.539 47.619 0.00 0.00 0.00 5.87
2085 7206 3.062234 GCGACGAGTTCCTAATTTCCTTG 59.938 47.826 0.00 0.00 0.00 3.61
2090 7211 7.001099 ACGAGTTCCTAATTTCCTTGAAGTA 57.999 36.000 0.00 0.00 0.00 2.24
2112 7265 4.430137 TCTTATATACATCGACCGGCAC 57.570 45.455 0.00 0.00 0.00 5.01
2133 7286 1.811965 TGAGCCAATTGATCACAACCG 59.188 47.619 7.12 0.00 38.90 4.44
2219 7372 1.592223 GCTGCTCCTTGTACTCCGT 59.408 57.895 0.00 0.00 0.00 4.69
2370 7526 1.597027 GTGGAGAACGTGGTGGTGG 60.597 63.158 0.00 0.00 0.00 4.61
2373 7529 2.203153 AGAACGTGGTGGTGGTGC 60.203 61.111 0.00 0.00 0.00 5.01
2378 7534 4.586235 GTGGTGGTGGTGCTGGCT 62.586 66.667 0.00 0.00 0.00 4.75
2379 7535 4.584518 TGGTGGTGGTGCTGGCTG 62.585 66.667 0.00 0.00 0.00 4.85
2433 7604 0.107831 GGTGCTTACTGTGGTGGTGA 59.892 55.000 0.00 0.00 0.00 4.02
2434 7605 1.226746 GTGCTTACTGTGGTGGTGAC 58.773 55.000 0.00 0.00 0.00 3.67
2656 7827 2.851263 AATAGCCACCTGACGAAACA 57.149 45.000 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.613260 CTACTGCTAAGTGGGCCACA 59.387 55.000 36.28 17.62 37.19 4.17
15 16 0.744771 GCTACTGCTAAGTGGGCCAC 60.745 60.000 29.32 29.32 37.19 5.01
16 17 1.602237 GCTACTGCTAAGTGGGCCA 59.398 57.895 0.00 0.00 37.19 5.36
17 18 1.521681 CGCTACTGCTAAGTGGGCC 60.522 63.158 0.00 0.00 37.19 5.80
18 19 2.174319 GCGCTACTGCTAAGTGGGC 61.174 63.158 0.00 0.00 37.19 5.36
19 20 1.521681 GGCGCTACTGCTAAGTGGG 60.522 63.158 7.64 0.00 37.19 4.61
20 21 0.807667 CAGGCGCTACTGCTAAGTGG 60.808 60.000 7.64 0.00 37.19 4.00
21 22 0.807667 CCAGGCGCTACTGCTAAGTG 60.808 60.000 7.64 0.00 37.19 3.16
22 23 1.517832 CCAGGCGCTACTGCTAAGT 59.482 57.895 7.64 0.00 40.67 2.24
23 24 1.884926 GCCAGGCGCTACTGCTAAG 60.885 63.158 7.64 0.00 37.16 2.18
24 25 2.186903 GCCAGGCGCTACTGCTAA 59.813 61.111 7.64 0.00 37.16 3.09
25 26 3.849951 GGCCAGGCGCTACTGCTA 61.850 66.667 7.64 0.00 37.16 3.49
28 29 4.087892 ACTGGCCAGGCGCTACTG 62.088 66.667 35.42 9.59 37.74 2.74
29 30 4.087892 CACTGGCCAGGCGCTACT 62.088 66.667 35.42 11.03 37.74 2.57
30 31 4.082523 TCACTGGCCAGGCGCTAC 62.083 66.667 35.42 0.00 37.74 3.58
31 32 3.774528 CTCACTGGCCAGGCGCTA 61.775 66.667 35.42 14.99 37.74 4.26
36 37 3.699894 ACGCTCTCACTGGCCAGG 61.700 66.667 35.42 23.77 0.00 4.45
37 38 2.433838 CACGCTCTCACTGGCCAG 60.434 66.667 31.60 31.60 0.00 4.85
38 39 4.687215 GCACGCTCTCACTGGCCA 62.687 66.667 4.71 4.71 0.00 5.36
39 40 3.006756 TAGCACGCTCTCACTGGCC 62.007 63.158 0.00 0.00 0.00 5.36
40 41 1.807573 GTAGCACGCTCTCACTGGC 60.808 63.158 0.00 0.00 0.00 4.85
41 42 0.457509 CAGTAGCACGCTCTCACTGG 60.458 60.000 11.10 0.00 34.35 4.00
42 43 1.075425 GCAGTAGCACGCTCTCACTG 61.075 60.000 13.65 13.65 41.58 3.66
43 44 1.214062 GCAGTAGCACGCTCTCACT 59.786 57.895 0.00 0.00 41.58 3.41
44 45 0.452184 TAGCAGTAGCACGCTCTCAC 59.548 55.000 0.00 0.00 45.49 3.51
45 46 1.133216 CTTAGCAGTAGCACGCTCTCA 59.867 52.381 0.00 0.00 45.49 3.27
46 47 1.133407 ACTTAGCAGTAGCACGCTCTC 59.867 52.381 0.00 0.00 45.49 3.20
47 48 1.178276 ACTTAGCAGTAGCACGCTCT 58.822 50.000 0.00 0.00 45.49 4.09
48 49 2.846039 TACTTAGCAGTAGCACGCTC 57.154 50.000 0.00 0.00 45.49 5.03
49 50 3.802948 AATACTTAGCAGTAGCACGCT 57.197 42.857 0.00 0.00 45.49 5.07
50 51 3.734735 GGTAATACTTAGCAGTAGCACGC 59.265 47.826 0.00 0.00 45.49 5.34
51 52 4.976731 CAGGTAATACTTAGCAGTAGCACG 59.023 45.833 0.00 0.00 45.49 5.34
52 53 5.903810 ACAGGTAATACTTAGCAGTAGCAC 58.096 41.667 0.00 0.00 45.49 4.40
53 54 7.273320 CTACAGGTAATACTTAGCAGTAGCA 57.727 40.000 12.54 0.00 42.53 3.49
56 57 5.278169 GCGCTACAGGTAATACTTAGCAGTA 60.278 44.000 0.00 5.72 39.94 2.74
57 58 4.499357 GCGCTACAGGTAATACTTAGCAGT 60.499 45.833 0.00 5.03 35.85 4.40
58 59 3.982058 GCGCTACAGGTAATACTTAGCAG 59.018 47.826 0.00 10.42 35.85 4.24
59 60 3.549423 CGCGCTACAGGTAATACTTAGCA 60.549 47.826 5.56 0.00 35.85 3.49
60 61 2.978489 CGCGCTACAGGTAATACTTAGC 59.022 50.000 5.56 8.29 33.28 3.09
61 62 4.217497 GACGCGCTACAGGTAATACTTAG 58.783 47.826 5.73 0.00 0.00 2.18
62 63 3.003689 GGACGCGCTACAGGTAATACTTA 59.996 47.826 5.73 0.00 0.00 2.24
63 64 2.223665 GGACGCGCTACAGGTAATACTT 60.224 50.000 5.73 0.00 0.00 2.24
64 65 1.336125 GGACGCGCTACAGGTAATACT 59.664 52.381 5.73 0.00 0.00 2.12
65 66 1.336125 AGGACGCGCTACAGGTAATAC 59.664 52.381 5.73 0.00 0.00 1.89
66 67 1.605710 GAGGACGCGCTACAGGTAATA 59.394 52.381 5.73 0.00 0.00 0.98
67 68 0.384669 GAGGACGCGCTACAGGTAAT 59.615 55.000 5.73 0.00 0.00 1.89
68 69 0.679002 AGAGGACGCGCTACAGGTAA 60.679 55.000 5.73 0.00 0.00 2.85
69 70 0.679002 AAGAGGACGCGCTACAGGTA 60.679 55.000 5.73 0.00 0.00 3.08
70 71 1.533469 AAAGAGGACGCGCTACAGGT 61.533 55.000 5.73 0.00 0.00 4.00
71 72 0.454600 TAAAGAGGACGCGCTACAGG 59.545 55.000 5.73 0.00 0.00 4.00
72 73 1.546834 GTAAAGAGGACGCGCTACAG 58.453 55.000 5.73 0.00 0.00 2.74
73 74 0.171903 GGTAAAGAGGACGCGCTACA 59.828 55.000 5.73 0.00 0.00 2.74
74 75 0.455005 AGGTAAAGAGGACGCGCTAC 59.545 55.000 5.73 0.00 0.00 3.58
75 76 0.454600 CAGGTAAAGAGGACGCGCTA 59.545 55.000 5.73 0.00 0.00 4.26
76 77 1.215647 CAGGTAAAGAGGACGCGCT 59.784 57.895 5.73 0.00 0.00 5.92
77 78 2.453638 GCAGGTAAAGAGGACGCGC 61.454 63.158 5.73 0.00 0.00 6.86
78 79 2.158959 CGCAGGTAAAGAGGACGCG 61.159 63.158 3.53 3.53 34.89 6.01
79 80 2.453638 GCGCAGGTAAAGAGGACGC 61.454 63.158 0.30 0.00 37.93 5.19
80 81 1.078759 CAGCGCAGGTAAAGAGGACG 61.079 60.000 11.47 0.00 35.08 4.79
81 82 1.362406 GCAGCGCAGGTAAAGAGGAC 61.362 60.000 11.47 0.00 35.08 3.85
82 83 1.079127 GCAGCGCAGGTAAAGAGGA 60.079 57.895 11.47 0.00 35.08 3.71
83 84 1.078848 AGCAGCGCAGGTAAAGAGG 60.079 57.895 11.47 0.00 35.08 3.69
84 85 1.975363 GCAGCAGCGCAGGTAAAGAG 61.975 60.000 11.47 0.00 35.08 2.85
85 86 2.034879 GCAGCAGCGCAGGTAAAGA 61.035 57.895 11.47 0.00 35.08 2.52
86 87 2.482374 GCAGCAGCGCAGGTAAAG 59.518 61.111 11.47 0.00 35.08 1.85
103 104 1.262824 CGCGCGCTACTGCTAACTAG 61.263 60.000 30.48 4.24 36.97 2.57
104 105 1.298116 CGCGCGCTACTGCTAACTA 60.298 57.895 30.48 0.00 36.97 2.24
105 106 2.579787 CGCGCGCTACTGCTAACT 60.580 61.111 30.48 0.00 36.97 2.24
106 107 2.846793 GACGCGCGCTACTGCTAAC 61.847 63.158 32.58 4.65 36.97 2.34
107 108 2.578713 GACGCGCGCTACTGCTAA 60.579 61.111 32.58 0.00 36.97 3.09
108 109 4.547905 GGACGCGCGCTACTGCTA 62.548 66.667 32.58 0.00 36.97 3.49
111 112 2.380410 AAAAGGACGCGCGCTACTG 61.380 57.895 32.58 16.18 0.00 2.74
112 113 2.048503 AAAAGGACGCGCGCTACT 60.049 55.556 32.58 22.39 0.00 2.57
113 114 2.095843 CAAAAGGACGCGCGCTAC 59.904 61.111 32.58 20.30 0.00 3.58
114 115 2.048970 TCAAAAGGACGCGCGCTA 60.049 55.556 32.58 1.13 0.00 4.26
115 116 3.712881 GTCAAAAGGACGCGCGCT 61.713 61.111 32.58 17.79 36.65 5.92
123 124 2.143122 CAGTAGCGCTTGTCAAAAGGA 58.857 47.619 18.68 0.00 0.00 3.36
124 125 2.143122 TCAGTAGCGCTTGTCAAAAGG 58.857 47.619 18.68 0.00 0.00 3.11
125 126 5.530519 TTATCAGTAGCGCTTGTCAAAAG 57.469 39.130 18.68 0.00 0.00 2.27
126 127 5.673568 GCATTATCAGTAGCGCTTGTCAAAA 60.674 40.000 18.68 4.68 0.00 2.44
127 128 4.201812 GCATTATCAGTAGCGCTTGTCAAA 60.202 41.667 18.68 4.09 0.00 2.69
128 129 3.309682 GCATTATCAGTAGCGCTTGTCAA 59.690 43.478 18.68 7.84 0.00 3.18
129 130 2.866156 GCATTATCAGTAGCGCTTGTCA 59.134 45.455 18.68 0.00 0.00 3.58
130 131 3.126831 AGCATTATCAGTAGCGCTTGTC 58.873 45.455 18.68 7.06 0.00 3.18
131 132 3.126831 GAGCATTATCAGTAGCGCTTGT 58.873 45.455 18.68 0.00 0.00 3.16
132 133 2.478134 GGAGCATTATCAGTAGCGCTTG 59.522 50.000 18.68 9.48 0.00 4.01
133 134 2.760374 GGAGCATTATCAGTAGCGCTT 58.240 47.619 18.68 0.00 0.00 4.68
134 135 1.336332 CGGAGCATTATCAGTAGCGCT 60.336 52.381 17.26 17.26 0.00 5.92
135 136 1.063806 CGGAGCATTATCAGTAGCGC 58.936 55.000 0.00 0.00 0.00 5.92
136 137 2.054363 CACGGAGCATTATCAGTAGCG 58.946 52.381 0.00 0.00 0.00 4.26
137 138 3.099267 ACACGGAGCATTATCAGTAGC 57.901 47.619 0.00 0.00 0.00 3.58
138 139 7.030165 CCTTATACACGGAGCATTATCAGTAG 58.970 42.308 0.00 0.00 0.00 2.57
139 140 6.492429 ACCTTATACACGGAGCATTATCAGTA 59.508 38.462 0.00 0.00 0.00 2.74
140 141 5.304614 ACCTTATACACGGAGCATTATCAGT 59.695 40.000 0.00 0.00 0.00 3.41
141 142 5.784177 ACCTTATACACGGAGCATTATCAG 58.216 41.667 0.00 0.00 0.00 2.90
142 143 5.801531 ACCTTATACACGGAGCATTATCA 57.198 39.130 0.00 0.00 0.00 2.15
143 144 7.307811 GGAAAACCTTATACACGGAGCATTATC 60.308 40.741 0.00 0.00 0.00 1.75
144 145 6.485648 GGAAAACCTTATACACGGAGCATTAT 59.514 38.462 0.00 0.00 0.00 1.28
145 146 5.818857 GGAAAACCTTATACACGGAGCATTA 59.181 40.000 0.00 0.00 0.00 1.90
146 147 4.638865 GGAAAACCTTATACACGGAGCATT 59.361 41.667 0.00 0.00 0.00 3.56
147 148 4.196971 GGAAAACCTTATACACGGAGCAT 58.803 43.478 0.00 0.00 0.00 3.79
148 149 3.602483 GGAAAACCTTATACACGGAGCA 58.398 45.455 0.00 0.00 0.00 4.26
149 150 2.941064 GGGAAAACCTTATACACGGAGC 59.059 50.000 0.00 0.00 35.85 4.70
162 163 5.662456 GATCTCACACTACTAGGGAAAACC 58.338 45.833 0.00 0.00 40.67 3.27
163 164 5.341617 CGATCTCACACTACTAGGGAAAAC 58.658 45.833 0.00 0.00 0.00 2.43
164 165 4.142227 GCGATCTCACACTACTAGGGAAAA 60.142 45.833 0.00 0.00 0.00 2.29
165 166 3.380637 GCGATCTCACACTACTAGGGAAA 59.619 47.826 0.00 0.00 0.00 3.13
166 167 2.950309 GCGATCTCACACTACTAGGGAA 59.050 50.000 0.00 0.00 0.00 3.97
167 168 2.092592 TGCGATCTCACACTACTAGGGA 60.093 50.000 0.00 0.00 0.00 4.20
168 169 2.298610 TGCGATCTCACACTACTAGGG 58.701 52.381 0.00 0.00 0.00 3.53
169 170 3.489398 GGTTGCGATCTCACACTACTAGG 60.489 52.174 0.00 0.00 0.00 3.02
170 171 3.696898 GGTTGCGATCTCACACTACTAG 58.303 50.000 0.00 0.00 0.00 2.57
171 172 2.096980 CGGTTGCGATCTCACACTACTA 59.903 50.000 0.00 0.00 0.00 1.82
172 173 1.135373 CGGTTGCGATCTCACACTACT 60.135 52.381 0.00 0.00 0.00 2.57
173 174 1.269166 CGGTTGCGATCTCACACTAC 58.731 55.000 0.00 0.00 0.00 2.73
174 175 0.885879 ACGGTTGCGATCTCACACTA 59.114 50.000 0.00 0.00 0.00 2.74
175 176 0.388649 GACGGTTGCGATCTCACACT 60.389 55.000 0.00 0.00 0.00 3.55
176 177 1.674611 CGACGGTTGCGATCTCACAC 61.675 60.000 0.00 0.00 0.00 3.82
177 178 1.443702 CGACGGTTGCGATCTCACA 60.444 57.895 0.00 0.00 0.00 3.58
178 179 0.525668 ATCGACGGTTGCGATCTCAC 60.526 55.000 0.00 0.00 44.39 3.51
179 180 0.525455 CATCGACGGTTGCGATCTCA 60.525 55.000 2.17 0.00 45.74 3.27
180 181 1.812214 GCATCGACGGTTGCGATCTC 61.812 60.000 7.72 0.00 45.74 2.75
181 182 1.878522 GCATCGACGGTTGCGATCT 60.879 57.895 7.72 0.00 45.74 2.75
222 225 2.419620 GGTGGTGTTTTTGGCCGG 59.580 61.111 0.00 0.00 0.00 6.13
244 247 8.512800 CACAGTATATGACTATGCAACAGTAG 57.487 38.462 4.44 0.00 35.64 2.57
263 266 2.279741 GCGATGATTTGAGGCACAGTA 58.720 47.619 0.00 0.00 0.00 2.74
276 279 1.134699 ACGATGACTTGTGGCGATGAT 60.135 47.619 0.00 0.00 0.00 2.45
278 281 0.647410 GACGATGACTTGTGGCGATG 59.353 55.000 0.00 0.00 0.00 3.84
279 282 0.532573 AGACGATGACTTGTGGCGAT 59.467 50.000 0.00 0.00 0.00 4.58
283 286 3.850122 TCTACAGACGATGACTTGTGG 57.150 47.619 0.00 0.00 0.00 4.17
285 288 3.487711 GCGATCTACAGACGATGACTTGT 60.488 47.826 0.00 0.00 0.00 3.16
286 289 3.039405 GCGATCTACAGACGATGACTTG 58.961 50.000 0.00 0.00 0.00 3.16
287 290 2.683362 TGCGATCTACAGACGATGACTT 59.317 45.455 0.00 0.00 0.00 3.01
289 292 2.757686 TGCGATCTACAGACGATGAC 57.242 50.000 0.00 0.00 0.00 3.06
290 293 3.142174 AGATGCGATCTACAGACGATGA 58.858 45.455 0.00 0.00 38.00 2.92
291 294 3.058639 TGAGATGCGATCTACAGACGATG 60.059 47.826 0.00 0.00 40.38 3.84
292 295 3.058570 GTGAGATGCGATCTACAGACGAT 60.059 47.826 0.00 0.00 40.38 3.73
293 296 2.288186 GTGAGATGCGATCTACAGACGA 59.712 50.000 0.00 0.00 40.38 4.20
294 297 2.603412 GGTGAGATGCGATCTACAGACG 60.603 54.545 0.00 0.00 40.38 4.18
295 298 2.603412 CGGTGAGATGCGATCTACAGAC 60.603 54.545 0.00 0.00 40.38 3.51
296 299 1.604278 CGGTGAGATGCGATCTACAGA 59.396 52.381 0.00 0.00 40.38 3.41
297 300 1.335182 ACGGTGAGATGCGATCTACAG 59.665 52.381 0.00 0.00 40.38 2.74
298 301 1.389555 ACGGTGAGATGCGATCTACA 58.610 50.000 0.00 0.00 40.38 2.74
299 302 2.120232 CAACGGTGAGATGCGATCTAC 58.880 52.381 0.00 0.00 40.38 2.59
300 303 2.021457 TCAACGGTGAGATGCGATCTA 58.979 47.619 0.00 0.00 40.38 1.98
301 304 0.817654 TCAACGGTGAGATGCGATCT 59.182 50.000 0.00 0.00 43.70 2.75
302 305 1.590238 CTTCAACGGTGAGATGCGATC 59.410 52.381 2.09 0.00 34.49 3.69
349 352 1.218316 GGCTAAGTCCCGACACTGG 59.782 63.158 0.00 0.00 0.00 4.00
371 384 3.006756 GCCGCTGCTAGACCAGTGA 62.007 63.158 11.24 0.00 44.09 3.41
395 416 0.030092 TACCTCCCCATCCTCCCTTG 60.030 60.000 0.00 0.00 0.00 3.61
428 449 0.103937 CCATCTCCTCTCTTCCGCAC 59.896 60.000 0.00 0.00 0.00 5.34
437 458 1.668101 GAACGCGGTCCATCTCCTCT 61.668 60.000 14.72 0.00 0.00 3.69
442 463 1.215647 GTCTGAACGCGGTCCATCT 59.784 57.895 23.54 0.00 0.00 2.90
445 466 1.300620 CTTGTCTGAACGCGGTCCA 60.301 57.895 23.54 9.86 0.00 4.02
456 477 4.692155 TGTGCATTGTATCTGTCTTGTCTG 59.308 41.667 0.00 0.00 0.00 3.51
460 481 7.878477 AAAAATGTGCATTGTATCTGTCTTG 57.122 32.000 0.00 0.00 0.00 3.02
491 512 3.120304 GCCGCCACACTTTTTAAGTCTAG 60.120 47.826 0.00 0.00 40.46 2.43
496 517 1.880027 AGAGCCGCCACACTTTTTAAG 59.120 47.619 0.00 0.00 0.00 1.85
499 520 0.668535 GAAGAGCCGCCACACTTTTT 59.331 50.000 0.00 0.00 0.00 1.94
556 577 4.582240 TGTAACACTGCATCAAATTGTCCA 59.418 37.500 0.00 0.00 0.00 4.02
557 578 5.119931 TGTAACACTGCATCAAATTGTCC 57.880 39.130 0.00 0.00 0.00 4.02
563 588 5.240403 TGCAAGTATGTAACACTGCATCAAA 59.760 36.000 0.00 0.00 41.57 2.69
565 590 4.322567 TGCAAGTATGTAACACTGCATCA 58.677 39.130 0.00 0.00 41.57 3.07
585 610 1.000938 CTTGTTCACCAAAGAGCCTGC 60.001 52.381 0.00 0.00 31.20 4.85
588 613 2.291741 CTGACTTGTTCACCAAAGAGCC 59.708 50.000 0.00 0.00 31.20 4.70
590 615 2.945008 TGCTGACTTGTTCACCAAAGAG 59.055 45.455 0.00 0.00 31.20 2.85
592 617 2.542411 GCTGCTGACTTGTTCACCAAAG 60.542 50.000 0.00 0.00 31.20 2.77
597 622 0.871057 GGAGCTGCTGACTTGTTCAC 59.129 55.000 7.01 0.00 0.00 3.18
598 623 0.601046 CGGAGCTGCTGACTTGTTCA 60.601 55.000 7.01 0.00 0.00 3.18
599 624 0.319900 TCGGAGCTGCTGACTTGTTC 60.320 55.000 7.01 0.00 0.00 3.18
649 3718 6.083098 TGTAATGAAAACTTGGATGTGTGG 57.917 37.500 0.00 0.00 0.00 4.17
695 3764 5.989477 TGGATATACCTACAATATGCAGCC 58.011 41.667 0.00 0.00 34.09 4.85
723 3798 8.233037 TGTTATGCAACTCTTGGTGTATCCAAT 61.233 37.037 0.00 0.00 43.56 3.16
774 3851 3.279950 CGAATTGACAGTTTGACACACG 58.720 45.455 0.00 0.00 0.00 4.49
794 3871 2.882777 CTGTGTCCAGCTAGCGCG 60.883 66.667 9.55 0.00 42.32 6.86
902 3997 6.310197 GTGAAGATGTTGAACTACTTGATGC 58.690 40.000 10.86 0.86 0.00 3.91
938 4033 0.394762 TGATTGATGGAGGCTGTGGC 60.395 55.000 0.00 0.00 37.82 5.01
980 4083 5.163478 GCCATTGGAAATGAATGTAGCTTCT 60.163 40.000 6.95 0.00 0.00 2.85
981 4084 5.045872 GCCATTGGAAATGAATGTAGCTTC 58.954 41.667 6.95 0.00 0.00 3.86
1086 4200 0.171231 TGAAGTCGCTGAGGATGTCG 59.829 55.000 0.00 0.00 0.00 4.35
1183 4300 3.654178 GCATGGTCATGTTCATGGC 57.346 52.632 22.50 10.39 40.59 4.40
1209 4326 4.467084 TTCTGCGTCCCGGGCATC 62.467 66.667 18.49 7.90 40.09 3.91
1210 4327 4.778143 GTTCTGCGTCCCGGGCAT 62.778 66.667 18.49 0.00 40.09 4.40
1212 4329 4.699522 AAGTTCTGCGTCCCGGGC 62.700 66.667 18.49 10.58 0.00 6.13
1213 4330 2.434359 GAAGTTCTGCGTCCCGGG 60.434 66.667 16.85 16.85 0.00 5.73
1214 4331 2.027625 GTGAAGTTCTGCGTCCCGG 61.028 63.158 4.17 0.00 0.00 5.73
1215 4332 2.372690 CGTGAAGTTCTGCGTCCCG 61.373 63.158 4.17 0.00 0.00 5.14
1216 4333 2.027625 CCGTGAAGTTCTGCGTCCC 61.028 63.158 15.42 0.00 0.00 4.46
1217 4334 1.300697 ACCGTGAAGTTCTGCGTCC 60.301 57.895 15.42 0.00 0.00 4.79
1245 4389 2.391678 GCAGGGAATTCCATCATGGTT 58.608 47.619 25.67 0.00 39.03 3.67
1305 4449 1.595357 GTTCACGGATTCGGAGGGT 59.405 57.895 0.00 0.00 41.39 4.34
1620 4764 1.962822 CGCCTTGAGCTTCTGCACA 60.963 57.895 0.00 0.00 42.74 4.57
1684 4864 1.091197 TAGCCGCGTCGATACACTGA 61.091 55.000 4.92 0.00 0.00 3.41
1685 4865 0.040336 ATAGCCGCGTCGATACACTG 60.040 55.000 4.92 0.00 0.00 3.66
1686 4866 0.040336 CATAGCCGCGTCGATACACT 60.040 55.000 4.92 0.00 0.00 3.55
1687 4867 0.040692 TCATAGCCGCGTCGATACAC 60.041 55.000 4.92 0.00 0.00 2.90
1688 4868 0.664224 TTCATAGCCGCGTCGATACA 59.336 50.000 4.92 0.00 0.00 2.29
1689 4869 1.978542 ATTCATAGCCGCGTCGATAC 58.021 50.000 4.92 0.00 0.00 2.24
1690 4870 2.717580 AATTCATAGCCGCGTCGATA 57.282 45.000 4.92 0.00 0.00 2.92
1691 4871 2.717580 TAATTCATAGCCGCGTCGAT 57.282 45.000 4.92 0.00 0.00 3.59
1692 4872 2.495409 TTAATTCATAGCCGCGTCGA 57.505 45.000 4.92 0.00 0.00 4.20
1693 4873 4.201589 CCTTATTAATTCATAGCCGCGTCG 60.202 45.833 4.92 0.00 0.00 5.12
1694 4874 4.435651 GCCTTATTAATTCATAGCCGCGTC 60.436 45.833 4.92 0.00 0.00 5.19
1695 4875 3.435671 GCCTTATTAATTCATAGCCGCGT 59.564 43.478 4.92 0.00 0.00 6.01
1699 4879 5.570320 TCAGGGCCTTATTAATTCATAGCC 58.430 41.667 1.32 0.00 38.45 3.93
1750 4932 0.108992 TAAGTGTCTACTTGGCGGCG 60.109 55.000 0.51 0.51 46.28 6.46
1768 4950 4.161565 TCGTTTACGGAGGGAGTAGTAGTA 59.838 45.833 2.09 0.00 40.29 1.82
1770 4952 3.535561 TCGTTTACGGAGGGAGTAGTAG 58.464 50.000 2.09 0.00 40.29 2.57
1773 4967 5.702349 ATATTCGTTTACGGAGGGAGTAG 57.298 43.478 2.09 0.00 40.29 2.57
1787 4981 8.136165 AGTGATCTAAACGCTCTTATATTCGTT 58.864 33.333 0.00 0.00 45.51 3.85
1788 4982 7.649973 AGTGATCTAAACGCTCTTATATTCGT 58.350 34.615 0.00 0.00 36.67 3.85
1789 4983 9.608617 TTAGTGATCTAAACGCTCTTATATTCG 57.391 33.333 0.00 0.00 33.79 3.34
1795 4989 7.464830 GCATTTAGTGATCTAAACGCTCTTA 57.535 36.000 10.20 0.00 45.69 2.10
1796 4990 6.351327 GCATTTAGTGATCTAAACGCTCTT 57.649 37.500 10.20 0.00 45.69 2.85
1797 4991 5.975410 GCATTTAGTGATCTAAACGCTCT 57.025 39.130 10.20 0.00 45.69 4.09
1817 5011 7.857456 TCCCTCTGTAAACAAATATAAGAGCA 58.143 34.615 0.00 0.00 0.00 4.26
1818 5012 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
1827 5021 7.549147 ACATAGTACTCCCTCTGTAAACAAA 57.451 36.000 0.00 0.00 0.00 2.83
1828 5022 8.654485 TTACATAGTACTCCCTCTGTAAACAA 57.346 34.615 0.00 0.00 33.60 2.83
1856 5145 3.627577 CCTCACCCACAACAAGCATATAC 59.372 47.826 0.00 0.00 0.00 1.47
1858 5147 2.041620 ACCTCACCCACAACAAGCATAT 59.958 45.455 0.00 0.00 0.00 1.78
1860 5149 0.185901 ACCTCACCCACAACAAGCAT 59.814 50.000 0.00 0.00 0.00 3.79
1868 5157 0.180171 CAACTCACACCTCACCCACA 59.820 55.000 0.00 0.00 0.00 4.17
1869 5158 0.180406 ACAACTCACACCTCACCCAC 59.820 55.000 0.00 0.00 0.00 4.61
1870 5159 0.180171 CACAACTCACACCTCACCCA 59.820 55.000 0.00 0.00 0.00 4.51
1871 5160 0.468226 TCACAACTCACACCTCACCC 59.532 55.000 0.00 0.00 0.00 4.61
1872 5161 2.549754 CAATCACAACTCACACCTCACC 59.450 50.000 0.00 0.00 0.00 4.02
1877 5166 1.949525 AGCACAATCACAACTCACACC 59.050 47.619 0.00 0.00 0.00 4.16
1911 5204 5.664908 AGATGTACAACTTCCTGGATCAGAT 59.335 40.000 0.00 0.00 32.44 2.90
1912 5205 5.026121 AGATGTACAACTTCCTGGATCAGA 58.974 41.667 0.00 0.00 32.44 3.27
1913 5206 5.114780 CAGATGTACAACTTCCTGGATCAG 58.885 45.833 2.37 0.00 0.00 2.90
1916 5209 4.780021 AGACAGATGTACAACTTCCTGGAT 59.220 41.667 2.37 0.00 0.00 3.41
1917 5210 4.021104 CAGACAGATGTACAACTTCCTGGA 60.021 45.833 17.06 0.00 0.00 3.86
1918 5211 4.248859 CAGACAGATGTACAACTTCCTGG 58.751 47.826 17.06 5.25 0.00 4.45
1919 5212 4.887748 ACAGACAGATGTACAACTTCCTG 58.112 43.478 20.53 20.53 0.00 3.86
1920 5213 5.552870 AACAGACAGATGTACAACTTCCT 57.447 39.130 2.37 0.99 31.70 3.36
1921 5214 7.907214 ATAAACAGACAGATGTACAACTTCC 57.093 36.000 2.37 0.00 31.70 3.46
1929 5254 9.154847 CTCACATCAAATAAACAGACAGATGTA 57.845 33.333 0.00 0.00 41.67 2.29
1936 5261 5.637810 TCGACCTCACATCAAATAAACAGAC 59.362 40.000 0.00 0.00 0.00 3.51
1938 5263 6.457392 CCATCGACCTCACATCAAATAAACAG 60.457 42.308 0.00 0.00 0.00 3.16
1954 5279 1.816537 CATCCGTGACCATCGACCT 59.183 57.895 0.00 0.00 0.00 3.85
1962 5287 0.108186 TGACATGAGCATCCGTGACC 60.108 55.000 0.00 0.00 0.00 4.02
1989 7094 0.389391 ACTTGTGCTACTGCGTCTGT 59.611 50.000 0.00 0.00 43.34 3.41
1990 7095 1.193203 CAACTTGTGCTACTGCGTCTG 59.807 52.381 0.00 0.00 43.34 3.51
2002 7107 2.607635 ACGTTGTACAGAGCAACTTGTG 59.392 45.455 0.00 0.00 42.73 3.33
2004 7109 4.605354 CGTTACGTTGTACAGAGCAACTTG 60.605 45.833 0.00 0.00 42.73 3.16
2008 7113 2.396601 CCGTTACGTTGTACAGAGCAA 58.603 47.619 3.52 0.00 0.00 3.91
2011 7117 2.054687 TGCCGTTACGTTGTACAGAG 57.945 50.000 3.52 0.00 0.00 3.35
2013 7119 2.284684 TGTTTGCCGTTACGTTGTACAG 59.715 45.455 3.52 0.00 0.00 2.74
2018 7124 2.741122 TTCTGTTTGCCGTTACGTTG 57.259 45.000 3.52 0.00 0.00 4.10
2019 7125 3.312973 TCATTTCTGTTTGCCGTTACGTT 59.687 39.130 3.52 0.00 0.00 3.99
2022 7128 4.602995 TGTTCATTTCTGTTTGCCGTTAC 58.397 39.130 0.00 0.00 0.00 2.50
2023 7129 4.902443 TGTTCATTTCTGTTTGCCGTTA 57.098 36.364 0.00 0.00 0.00 3.18
2065 7186 5.932883 ACTTCAAGGAAATTAGGAACTCGTC 59.067 40.000 0.00 0.00 41.75 4.20
2085 7206 6.911511 GCCGGTCGATGTATATAAGATACTTC 59.088 42.308 1.90 0.00 0.00 3.01
2090 7211 4.705507 AGTGCCGGTCGATGTATATAAGAT 59.294 41.667 1.90 0.00 0.00 2.40
2112 7265 2.159476 CGGTTGTGATCAATTGGCTCAG 60.159 50.000 5.42 0.00 35.92 3.35
2205 7358 4.913126 GGCACGGAGTACAAGGAG 57.087 61.111 0.00 0.00 41.61 3.69
2229 7382 0.831288 CGCAGAGGGAGAGGGATGAT 60.831 60.000 0.00 0.00 0.00 2.45
2342 7495 4.680237 TTCTCCACAGGCACGCGG 62.680 66.667 12.47 0.00 0.00 6.46
2343 7496 3.414700 GTTCTCCACAGGCACGCG 61.415 66.667 3.53 3.53 0.00 6.01
2344 7497 3.414700 CGTTCTCCACAGGCACGC 61.415 66.667 0.00 0.00 0.00 5.34
2358 7514 2.515991 CAGCACCACCACCACGTT 60.516 61.111 0.00 0.00 0.00 3.99
2391 7559 2.253452 GCGCACAAGAAGCACAGG 59.747 61.111 0.30 0.00 0.00 4.00
2394 7562 2.425773 CACGCGCACAAGAAGCAC 60.426 61.111 5.73 0.00 0.00 4.40
2421 7589 2.504032 CACCGTCACCACCACAGT 59.496 61.111 0.00 0.00 0.00 3.55
2499 7670 4.980805 GACGTGTTCGGGCTGCCA 62.981 66.667 22.05 0.00 41.85 4.92
2517 7688 1.446272 GCTGTACGACTGCTGGGAC 60.446 63.158 0.00 0.00 39.55 4.46
2626 7797 4.706476 TCAGGTGGCTATTTTTCTTCATGG 59.294 41.667 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.