Multiple sequence alignment - TraesCS5B01G314300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G314300 chr5B 100.000 2660 0 0 1 2660 496568427 496571086 0.000000e+00 4913.0
1 TraesCS5B01G314300 chr5B 90.295 1154 75 20 660 1790 496549389 496550528 0.000000e+00 1476.0
2 TraesCS5B01G314300 chr5B 92.330 1056 53 9 635 1669 496805662 496806710 0.000000e+00 1476.0
3 TraesCS5B01G314300 chr5B 89.427 454 28 12 2209 2660 496807270 496807705 2.990000e-154 555.0
4 TraesCS5B01G314300 chr5B 88.916 415 33 4 44 445 299748449 299748863 1.420000e-137 499.0
5 TraesCS5B01G314300 chr5B 95.349 43 2 0 593 635 72255107 72255149 4.750000e-08 69.4
6 TraesCS5B01G314300 chr5B 95.349 43 2 0 593 635 72824556 72824514 4.750000e-08 69.4
7 TraesCS5B01G314300 chr5B 90.000 50 4 1 583 632 228278796 228278748 2.210000e-06 63.9
8 TraesCS5B01G314300 chr5A 93.750 1184 58 7 635 1815 524388917 524390087 0.000000e+00 1762.0
9 TraesCS5B01G314300 chr5A 87.953 1021 78 22 659 1668 524309063 524310049 0.000000e+00 1162.0
10 TraesCS5B01G314300 chr5A 93.548 558 28 2 2111 2660 524390466 524391023 0.000000e+00 824.0
11 TraesCS5B01G314300 chr5A 92.063 315 20 2 2351 2660 524317677 524317991 3.140000e-119 438.0
12 TraesCS5B01G314300 chr5A 83.251 406 64 2 44 445 5349498 5349093 1.160000e-98 370.0
13 TraesCS5B01G314300 chr5A 91.176 238 10 4 1889 2119 524390213 524390446 1.990000e-81 313.0
14 TraesCS5B01G314300 chr5A 84.568 162 17 4 2027 2184 524312097 524312254 1.280000e-33 154.0
15 TraesCS5B01G314300 chr5A 94.318 88 4 1 506 592 524385711 524385798 1.660000e-27 134.0
16 TraesCS5B01G314300 chr5A 97.778 45 1 0 2209 2253 524312321 524312365 7.890000e-11 78.7
17 TraesCS5B01G314300 chr5D 89.327 1115 77 23 659 1745 412448463 412449563 0.000000e+00 1362.0
18 TraesCS5B01G314300 chr5D 90.377 769 26 17 1913 2660 412449601 412450342 0.000000e+00 966.0
19 TraesCS5B01G314300 chr5D 91.304 115 10 0 1801 1915 500135733 500135847 9.860000e-35 158.0
20 TraesCS5B01G314300 chr4A 79.755 978 128 37 728 1663 601177939 601178888 0.000000e+00 645.0
21 TraesCS5B01G314300 chrUn 79.424 972 128 35 728 1663 60943091 60944026 2.910000e-174 621.0
22 TraesCS5B01G314300 chrUn 80.822 657 102 13 1000 1656 60947713 60947081 6.610000e-136 494.0
23 TraesCS5B01G314300 chrUn 78.466 743 129 21 936 1665 60935620 60936344 8.680000e-125 457.0
24 TraesCS5B01G314300 chrUn 81.522 276 29 9 253 506 311923700 311923425 9.650000e-50 207.0
25 TraesCS5B01G314300 chr4B 82.810 669 108 4 997 1663 5532005 5532668 2.280000e-165 592.0
26 TraesCS5B01G314300 chr4B 91.304 115 8 1 1803 1915 140590389 140590275 3.550000e-34 156.0
27 TraesCS5B01G314300 chr2B 89.510 429 36 2 26 445 222155467 222155039 3.900000e-148 534.0
28 TraesCS5B01G314300 chr2B 89.826 403 40 1 44 445 416209719 416209317 1.410000e-142 516.0
29 TraesCS5B01G314300 chr2B 83.711 485 71 6 30 508 154661656 154661174 4.040000e-123 451.0
30 TraesCS5B01G314300 chr3D 87.007 431 55 1 16 445 141629602 141629172 3.980000e-133 484.0
31 TraesCS5B01G314300 chr3D 80.665 331 54 7 117 443 178154832 178154508 5.690000e-62 248.0
32 TraesCS5B01G314300 chr3D 89.076 119 10 2 1804 1919 487392884 487393002 7.670000e-31 145.0
33 TraesCS5B01G314300 chr1B 86.374 433 47 2 25 445 232959339 232958907 1.870000e-126 462.0
34 TraesCS5B01G314300 chr7B 84.797 467 54 10 44 508 722601945 722601494 1.120000e-123 453.0
35 TraesCS5B01G314300 chr7B 84.351 262 28 4 30 280 659030846 659031105 7.360000e-61 244.0
36 TraesCS5B01G314300 chr7B 79.688 256 42 5 26 281 685724232 685723987 2.720000e-40 176.0
37 TraesCS5B01G314300 chr7D 85.472 413 58 2 34 445 174604562 174604973 1.890000e-116 429.0
38 TraesCS5B01G314300 chr7D 93.023 43 3 0 593 635 578144597 578144639 2.210000e-06 63.9
39 TraesCS5B01G314300 chr6B 84.354 441 60 5 13 445 588528193 588527754 8.800000e-115 424.0
40 TraesCS5B01G314300 chr6B 90.164 61 6 0 451 511 588527726 588527666 2.190000e-11 80.5
41 TraesCS5B01G314300 chr6B 92.105 38 3 0 474 511 81560687 81560650 1.000000e-03 54.7
42 TraesCS5B01G314300 chr2A 82.083 240 40 2 26 265 215067074 215067310 4.490000e-48 202.0
43 TraesCS5B01G314300 chr2A 97.436 39 1 0 593 631 59384288 59384250 1.710000e-07 67.6
44 TraesCS5B01G314300 chr1D 78.840 293 37 10 249 517 207571781 207571490 9.790000e-40 174.0
45 TraesCS5B01G314300 chr3B 92.035 113 8 1 1804 1915 557095840 557095728 9.860000e-35 158.0
46 TraesCS5B01G314300 chr3B 95.122 41 2 0 592 632 560759085 560759125 6.150000e-07 65.8
47 TraesCS5B01G314300 chr3B 90.385 52 2 1 584 632 815332424 815332475 6.150000e-07 65.8
48 TraesCS5B01G314300 chr3A 92.105 114 6 2 1804 1915 34829515 34829403 9.860000e-35 158.0
49 TraesCS5B01G314300 chr3A 90.351 114 9 1 1804 1915 341629600 341629713 5.930000e-32 148.0
50 TraesCS5B01G314300 chr3A 89.916 119 5 4 1804 1915 176930475 176930357 2.130000e-31 147.0
51 TraesCS5B01G314300 chr4D 91.150 113 9 1 1804 1915 489195110 489195222 4.590000e-33 152.0
52 TraesCS5B01G314300 chr2D 90.756 119 4 3 1804 1915 437904054 437903936 4.590000e-33 152.0
53 TraesCS5B01G314300 chr2D 93.023 43 3 0 593 635 538943507 538943465 2.210000e-06 63.9
54 TraesCS5B01G314300 chr6D 78.400 250 30 10 287 513 211959741 211959989 9.930000e-30 141.0
55 TraesCS5B01G314300 chr6D 97.436 39 1 0 593 631 100873818 100873856 1.710000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G314300 chr5B 496568427 496571086 2659 False 4913.00 4913 100.000000 1 2660 1 chr5B.!!$F4 2659
1 TraesCS5B01G314300 chr5B 496549389 496550528 1139 False 1476.00 1476 90.295000 660 1790 1 chr5B.!!$F3 1130
2 TraesCS5B01G314300 chr5B 496805662 496807705 2043 False 1015.50 1476 90.878500 635 2660 2 chr5B.!!$F5 2025
3 TraesCS5B01G314300 chr5A 524385711 524391023 5312 False 758.25 1762 93.198000 506 2660 4 chr5A.!!$F3 2154
4 TraesCS5B01G314300 chr5A 524309063 524312365 3302 False 464.90 1162 90.099667 659 2253 3 chr5A.!!$F2 1594
5 TraesCS5B01G314300 chr5D 412448463 412450342 1879 False 1164.00 1362 89.852000 659 2660 2 chr5D.!!$F2 2001
6 TraesCS5B01G314300 chr4A 601177939 601178888 949 False 645.00 645 79.755000 728 1663 1 chr4A.!!$F1 935
7 TraesCS5B01G314300 chrUn 60943091 60944026 935 False 621.00 621 79.424000 728 1663 1 chrUn.!!$F2 935
8 TraesCS5B01G314300 chrUn 60947081 60947713 632 True 494.00 494 80.822000 1000 1656 1 chrUn.!!$R1 656
9 TraesCS5B01G314300 chrUn 60935620 60936344 724 False 457.00 457 78.466000 936 1665 1 chrUn.!!$F1 729
10 TraesCS5B01G314300 chr4B 5532005 5532668 663 False 592.00 592 82.810000 997 1663 1 chr4B.!!$F1 666
11 TraesCS5B01G314300 chr6B 588527666 588528193 527 True 252.25 424 87.259000 13 511 2 chr6B.!!$R2 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 182 0.033504 CTGACACGTGGTTGCTACCT 59.966 55.0 21.57 0.0 45.27 3.08 F
231 238 0.035458 AGCTTTGCCGTCAACTAGCT 59.965 50.0 0.00 0.0 39.99 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1181 4305 0.248054 CATCGGCATGGTAACGTTGC 60.248 55.0 11.99 9.89 44.9 4.17 R
1815 5141 0.321671 TGAGGGACAAGCTTTCTCGG 59.678 55.0 0.00 0.00 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
44 45 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
118 125 4.687215 TGCTGTCCGCTGGCAGAC 62.687 66.667 20.86 8.66 40.11 3.51
132 139 2.290008 TGGCAGACGGCAAAGATCTTTA 60.290 45.455 20.07 0.00 46.20 1.85
141 148 2.096013 GCAAAGATCTTTACCGTCAGCC 59.904 50.000 20.07 0.54 0.00 4.85
143 150 2.969628 AGATCTTTACCGTCAGCCAG 57.030 50.000 0.00 0.00 0.00 4.85
144 151 1.134670 AGATCTTTACCGTCAGCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
162 169 0.233332 GCAGACGACAAAGCTGACAC 59.767 55.000 0.00 0.00 0.00 3.67
163 170 0.504384 CAGACGACAAAGCTGACACG 59.496 55.000 0.00 0.00 0.00 4.49
164 171 0.102481 AGACGACAAAGCTGACACGT 59.898 50.000 8.54 8.54 34.95 4.49
165 172 0.229753 GACGACAAAGCTGACACGTG 59.770 55.000 15.48 15.48 33.52 4.49
166 173 1.151777 ACGACAAAGCTGACACGTGG 61.152 55.000 21.57 2.89 32.74 4.94
167 174 1.151777 CGACAAAGCTGACACGTGGT 61.152 55.000 21.57 4.91 0.00 4.16
168 175 1.014352 GACAAAGCTGACACGTGGTT 58.986 50.000 21.57 0.00 0.00 3.67
169 176 0.732571 ACAAAGCTGACACGTGGTTG 59.267 50.000 21.57 14.77 0.00 3.77
170 177 0.592247 CAAAGCTGACACGTGGTTGC 60.592 55.000 21.57 18.93 0.00 4.17
171 178 0.748005 AAAGCTGACACGTGGTTGCT 60.748 50.000 21.57 20.79 39.94 3.91
172 179 0.105964 AAGCTGACACGTGGTTGCTA 59.894 50.000 24.08 4.30 38.20 3.49
173 180 0.600255 AGCTGACACGTGGTTGCTAC 60.600 55.000 23.08 6.80 37.67 3.58
174 181 1.566018 GCTGACACGTGGTTGCTACC 61.566 60.000 21.57 10.70 45.26 3.18
175 182 0.033504 CTGACACGTGGTTGCTACCT 59.966 55.000 21.57 0.00 45.27 3.08
176 183 0.249699 TGACACGTGGTTGCTACCTG 60.250 55.000 21.57 12.76 45.27 4.00
177 184 0.249741 GACACGTGGTTGCTACCTGT 60.250 55.000 21.57 13.80 45.27 4.00
178 185 2.234613 CACGTGGTTGCTACCTGTG 58.765 57.895 21.27 21.27 45.27 3.66
179 186 1.597027 ACGTGGTTGCTACCTGTGC 60.597 57.895 18.31 5.50 45.27 4.57
180 187 1.596752 CGTGGTTGCTACCTGTGCA 60.597 57.895 18.31 0.00 45.27 4.57
181 188 1.568612 CGTGGTTGCTACCTGTGCAG 61.569 60.000 18.31 0.32 45.27 4.41
182 189 1.600636 TGGTTGCTACCTGTGCAGC 60.601 57.895 18.31 0.00 45.27 5.25
183 190 3.267974 GTTGCTACCTGTGCAGCC 58.732 61.111 0.00 0.00 41.71 4.85
184 191 1.302832 GTTGCTACCTGTGCAGCCT 60.303 57.895 0.00 0.00 41.71 4.58
185 192 1.302752 TTGCTACCTGTGCAGCCTG 60.303 57.895 0.00 0.00 41.71 4.85
186 193 2.437359 GCTACCTGTGCAGCCTGG 60.437 66.667 0.00 0.00 0.00 4.45
187 194 2.270205 CTACCTGTGCAGCCTGGG 59.730 66.667 0.00 3.25 0.00 4.45
188 195 3.329889 TACCTGTGCAGCCTGGGG 61.330 66.667 0.00 1.75 0.00 4.96
191 198 4.275508 CTGTGCAGCCTGGGGTGT 62.276 66.667 18.25 0.00 44.52 4.16
192 199 2.851588 TGTGCAGCCTGGGGTGTA 60.852 61.111 18.25 12.36 44.52 2.90
194 201 2.529136 TGCAGCCTGGGGTGTACT 60.529 61.111 18.25 0.00 44.52 2.73
195 202 2.045926 GCAGCCTGGGGTGTACTG 60.046 66.667 18.25 4.20 44.52 2.74
196 203 2.671070 CAGCCTGGGGTGTACTGG 59.329 66.667 10.32 0.00 38.64 4.00
197 204 2.610859 AGCCTGGGGTGTACTGGG 60.611 66.667 0.00 0.00 0.00 4.45
198 205 4.426313 GCCTGGGGTGTACTGGGC 62.426 72.222 0.00 0.00 0.00 5.36
199 206 2.610859 CCTGGGGTGTACTGGGCT 60.611 66.667 0.00 0.00 0.00 5.19
200 207 2.671070 CTGGGGTGTACTGGGCTG 59.329 66.667 0.00 0.00 0.00 4.85
201 208 2.933287 TGGGGTGTACTGGGCTGG 60.933 66.667 0.00 0.00 0.00 4.85
202 209 4.426313 GGGGTGTACTGGGCTGGC 62.426 72.222 0.00 0.00 0.00 4.85
203 210 4.426313 GGGTGTACTGGGCTGGCC 62.426 72.222 14.23 14.23 0.00 5.36
204 211 3.330720 GGTGTACTGGGCTGGCCT 61.331 66.667 21.72 4.42 36.10 5.19
205 212 1.993391 GGTGTACTGGGCTGGCCTA 60.993 63.158 21.72 6.52 36.10 3.93
206 213 1.345715 GGTGTACTGGGCTGGCCTAT 61.346 60.000 21.72 11.55 36.10 2.57
207 214 0.546598 GTGTACTGGGCTGGCCTATT 59.453 55.000 21.72 7.84 36.10 1.73
208 215 1.064685 GTGTACTGGGCTGGCCTATTT 60.065 52.381 21.72 5.37 36.10 1.40
209 216 1.064758 TGTACTGGGCTGGCCTATTTG 60.065 52.381 21.72 8.66 36.10 2.32
210 217 0.550914 TACTGGGCTGGCCTATTTGG 59.449 55.000 21.72 7.01 39.35 3.28
226 233 2.050077 GGCAGCTTTGCCGTCAAC 60.050 61.111 0.59 0.00 45.79 3.18
227 234 2.555547 GGCAGCTTTGCCGTCAACT 61.556 57.895 0.59 0.00 45.79 3.16
228 235 1.234615 GGCAGCTTTGCCGTCAACTA 61.235 55.000 0.59 0.00 45.79 2.24
229 236 0.166814 GCAGCTTTGCCGTCAACTAG 59.833 55.000 0.00 0.00 30.75 2.57
230 237 0.166814 CAGCTTTGCCGTCAACTAGC 59.833 55.000 0.00 0.00 36.68 3.42
231 238 0.035458 AGCTTTGCCGTCAACTAGCT 59.965 50.000 0.00 0.00 39.99 3.32
232 239 0.166814 GCTTTGCCGTCAACTAGCTG 59.833 55.000 0.00 0.00 34.70 4.24
233 240 1.795768 CTTTGCCGTCAACTAGCTGA 58.204 50.000 0.00 0.00 30.75 4.26
234 241 1.461127 CTTTGCCGTCAACTAGCTGAC 59.539 52.381 15.02 15.02 41.98 3.51
238 245 4.988065 GTCAACTAGCTGACGGCA 57.012 55.556 10.37 0.00 44.79 5.69
239 246 3.210857 GTCAACTAGCTGACGGCAA 57.789 52.632 10.37 0.00 44.79 4.52
240 247 1.508632 GTCAACTAGCTGACGGCAAA 58.491 50.000 10.37 0.00 44.79 3.68
241 248 1.461127 GTCAACTAGCTGACGGCAAAG 59.539 52.381 10.37 8.00 44.79 2.77
242 249 1.343142 TCAACTAGCTGACGGCAAAGA 59.657 47.619 9.39 0.00 44.79 2.52
243 250 1.461127 CAACTAGCTGACGGCAAAGAC 59.539 52.381 9.39 0.00 44.79 3.01
244 251 0.037232 ACTAGCTGACGGCAAAGACC 60.037 55.000 9.39 0.00 44.79 3.85
245 252 0.247736 CTAGCTGACGGCAAAGACCT 59.752 55.000 9.39 0.00 44.79 3.85
246 253 0.685097 TAGCTGACGGCAAAGACCTT 59.315 50.000 9.39 0.00 44.79 3.50
247 254 0.179018 AGCTGACGGCAAAGACCTTT 60.179 50.000 9.39 0.00 44.79 3.11
265 272 2.486966 GCATCTTTGCCGTCTGCC 59.513 61.111 0.00 0.00 43.38 4.85
266 273 2.334946 GCATCTTTGCCGTCTGCCA 61.335 57.895 0.00 0.00 43.38 4.92
267 274 1.798735 CATCTTTGCCGTCTGCCAG 59.201 57.895 0.00 0.00 40.16 4.85
268 275 2.042831 ATCTTTGCCGTCTGCCAGC 61.043 57.895 0.00 0.00 40.16 4.85
269 276 2.475371 ATCTTTGCCGTCTGCCAGCT 62.475 55.000 0.00 0.00 40.16 4.24
270 277 2.974489 CTTTGCCGTCTGCCAGCTG 61.974 63.158 6.78 6.78 40.16 4.24
271 278 3.474486 TTTGCCGTCTGCCAGCTGA 62.474 57.895 17.39 0.00 40.16 4.26
272 279 4.687215 TGCCGTCTGCCAGCTGAC 62.687 66.667 17.39 16.95 40.16 3.51
281 288 2.979676 CCAGCTGACGGCAAAGCA 60.980 61.111 17.39 0.00 44.79 3.91
282 289 2.253452 CAGCTGACGGCAAAGCAC 59.747 61.111 8.42 0.00 44.79 4.40
283 290 3.349006 AGCTGACGGCAAAGCACG 61.349 61.111 9.39 0.00 44.79 5.34
285 292 3.022287 CTGACGGCAAAGCACGTT 58.978 55.556 0.00 0.00 44.24 3.99
286 293 1.369209 CTGACGGCAAAGCACGTTG 60.369 57.895 0.00 0.00 44.24 4.10
287 294 2.047151 CTGACGGCAAAGCACGTTGT 62.047 55.000 0.00 0.00 44.24 3.32
288 295 1.063488 GACGGCAAAGCACGTTGTT 59.937 52.632 6.89 0.00 44.24 2.83
289 296 0.305313 GACGGCAAAGCACGTTGTTA 59.695 50.000 6.89 0.00 44.24 2.41
290 297 0.733729 ACGGCAAAGCACGTTGTTAA 59.266 45.000 0.00 0.00 40.99 2.01
291 298 1.117234 CGGCAAAGCACGTTGTTAAC 58.883 50.000 0.00 0.00 0.00 2.01
292 299 1.483316 GGCAAAGCACGTTGTTAACC 58.517 50.000 2.48 0.00 0.00 2.85
293 300 1.483316 GCAAAGCACGTTGTTAACCC 58.517 50.000 2.48 0.00 0.00 4.11
294 301 1.066454 GCAAAGCACGTTGTTAACCCT 59.934 47.619 2.48 0.00 0.00 4.34
295 302 2.480587 GCAAAGCACGTTGTTAACCCTT 60.481 45.455 2.48 0.00 0.00 3.95
296 303 3.243134 GCAAAGCACGTTGTTAACCCTTA 60.243 43.478 2.48 0.00 0.00 2.69
297 304 4.734108 GCAAAGCACGTTGTTAACCCTTAA 60.734 41.667 2.48 0.00 0.00 1.85
298 305 4.556942 AAGCACGTTGTTAACCCTTAAC 57.443 40.909 2.48 0.00 44.43 2.01
299 306 2.545106 AGCACGTTGTTAACCCTTAACG 59.455 45.455 20.80 20.80 46.53 3.18
310 317 3.080647 CCTTAACGGGCCTAAGCTG 57.919 57.895 0.84 0.00 39.73 4.24
311 318 0.252197 CCTTAACGGGCCTAAGCTGT 59.748 55.000 0.84 0.00 39.73 4.40
312 319 1.653151 CTTAACGGGCCTAAGCTGTC 58.347 55.000 0.84 0.00 39.73 3.51
313 320 0.978151 TTAACGGGCCTAAGCTGTCA 59.022 50.000 0.84 0.00 39.73 3.58
314 321 0.248289 TAACGGGCCTAAGCTGTCAC 59.752 55.000 0.84 0.00 39.73 3.67
315 322 2.509336 CGGGCCTAAGCTGTCACG 60.509 66.667 0.84 0.00 39.73 4.35
316 323 2.663196 GGGCCTAAGCTGTCACGT 59.337 61.111 0.84 0.00 39.73 4.49
317 324 1.741770 GGGCCTAAGCTGTCACGTG 60.742 63.158 9.94 9.94 39.73 4.49
318 325 1.004918 GGCCTAAGCTGTCACGTGT 60.005 57.895 16.51 0.00 39.73 4.49
319 326 1.291877 GGCCTAAGCTGTCACGTGTG 61.292 60.000 16.51 8.39 39.73 3.82
320 327 1.901650 GCCTAAGCTGTCACGTGTGC 61.902 60.000 16.51 17.41 35.50 4.57
321 328 1.291877 CCTAAGCTGTCACGTGTGCC 61.292 60.000 16.51 5.60 0.00 5.01
322 329 1.617755 CTAAGCTGTCACGTGTGCCG 61.618 60.000 16.51 7.59 44.03 5.69
331 338 2.430921 CGTGTGCCGTCCAGACTC 60.431 66.667 0.00 0.00 35.68 3.36
332 339 2.920645 CGTGTGCCGTCCAGACTCT 61.921 63.158 0.00 0.00 35.68 3.24
333 340 1.367840 GTGTGCCGTCCAGACTCTT 59.632 57.895 0.00 0.00 35.02 2.85
334 341 0.249911 GTGTGCCGTCCAGACTCTTT 60.250 55.000 0.00 0.00 35.02 2.52
335 342 0.249868 TGTGCCGTCCAGACTCTTTG 60.250 55.000 0.00 0.00 0.00 2.77
336 343 1.301716 TGCCGTCCAGACTCTTTGC 60.302 57.895 0.00 0.00 0.00 3.68
337 344 2.035442 GCCGTCCAGACTCTTTGCC 61.035 63.158 0.00 0.00 0.00 4.52
338 345 1.738099 CCGTCCAGACTCTTTGCCG 60.738 63.158 0.00 0.00 0.00 5.69
339 346 1.006102 CGTCCAGACTCTTTGCCGT 60.006 57.895 0.00 0.00 0.00 5.68
340 347 1.009389 CGTCCAGACTCTTTGCCGTC 61.009 60.000 0.00 0.00 0.00 4.79
341 348 0.318762 GTCCAGACTCTTTGCCGTCT 59.681 55.000 0.00 0.00 40.92 4.18
343 350 4.683432 AGACTCTTTGCCGTCTGC 57.317 55.556 0.00 0.00 38.94 4.26
344 351 2.053618 AGACTCTTTGCCGTCTGCT 58.946 52.632 0.00 0.00 38.94 4.24
345 352 1.257743 AGACTCTTTGCCGTCTGCTA 58.742 50.000 0.00 0.00 38.94 3.49
346 353 1.203523 AGACTCTTTGCCGTCTGCTAG 59.796 52.381 0.00 0.00 38.94 3.42
347 354 0.390472 ACTCTTTGCCGTCTGCTAGC 60.390 55.000 8.10 8.10 42.00 3.42
348 355 0.390340 CTCTTTGCCGTCTGCTAGCA 60.390 55.000 18.22 18.22 42.00 3.49
349 356 0.390340 TCTTTGCCGTCTGCTAGCAG 60.390 55.000 34.48 34.48 44.86 4.24
356 363 3.376546 TCTGCTAGCAGACGGCAA 58.623 55.556 37.64 19.05 46.80 4.52
357 364 1.671166 TCTGCTAGCAGACGGCAAA 59.329 52.632 37.64 18.34 46.80 3.68
358 365 0.390340 TCTGCTAGCAGACGGCAAAG 60.390 55.000 37.64 15.06 46.80 2.77
359 366 3.699225 TCTGCTAGCAGACGGCAAAGG 62.699 57.143 37.64 14.34 46.80 3.11
374 381 3.116079 CAAAGGCCTTTGCATCTTTGT 57.884 42.857 38.12 9.22 42.66 2.83
375 382 3.062042 CAAAGGCCTTTGCATCTTTGTC 58.938 45.455 38.12 0.00 42.66 3.18
376 383 0.883833 AGGCCTTTGCATCTTTGTCG 59.116 50.000 0.00 0.00 40.13 4.35
377 384 0.598065 GGCCTTTGCATCTTTGTCGT 59.402 50.000 0.00 0.00 40.13 4.34
378 385 1.401539 GGCCTTTGCATCTTTGTCGTC 60.402 52.381 0.00 0.00 40.13 4.20
379 386 1.401539 GCCTTTGCATCTTTGTCGTCC 60.402 52.381 0.00 0.00 37.47 4.79
380 387 1.879380 CCTTTGCATCTTTGTCGTCCA 59.121 47.619 0.00 0.00 0.00 4.02
381 388 2.350772 CCTTTGCATCTTTGTCGTCCAC 60.351 50.000 0.00 0.00 0.00 4.02
382 389 1.234821 TTGCATCTTTGTCGTCCACC 58.765 50.000 0.00 0.00 0.00 4.61
383 390 0.107643 TGCATCTTTGTCGTCCACCA 59.892 50.000 0.00 0.00 0.00 4.17
384 391 0.798776 GCATCTTTGTCGTCCACCAG 59.201 55.000 0.00 0.00 0.00 4.00
385 392 0.798776 CATCTTTGTCGTCCACCAGC 59.201 55.000 0.00 0.00 0.00 4.85
386 393 0.396435 ATCTTTGTCGTCCACCAGCA 59.604 50.000 0.00 0.00 0.00 4.41
387 394 0.249868 TCTTTGTCGTCCACCAGCAG 60.250 55.000 0.00 0.00 0.00 4.24
388 395 0.249868 CTTTGTCGTCCACCAGCAGA 60.250 55.000 0.00 0.00 0.00 4.26
389 396 0.531974 TTTGTCGTCCACCAGCAGAC 60.532 55.000 0.00 0.00 0.00 3.51
401 408 3.435186 GCAGACGGCAAAGAGGGC 61.435 66.667 0.00 0.00 43.97 5.19
402 409 2.348998 CAGACGGCAAAGAGGGCT 59.651 61.111 0.00 0.00 0.00 5.19
403 410 1.302832 CAGACGGCAAAGAGGGCTT 60.303 57.895 0.00 0.00 35.37 4.35
404 411 0.890996 CAGACGGCAAAGAGGGCTTT 60.891 55.000 0.00 0.00 44.93 3.51
418 425 2.757686 GGCTTTGCCGTAGCTTATTC 57.242 50.000 0.00 0.00 39.62 1.75
419 426 2.014128 GGCTTTGCCGTAGCTTATTCA 58.986 47.619 0.00 0.00 39.62 2.57
420 427 2.032178 GGCTTTGCCGTAGCTTATTCAG 59.968 50.000 0.00 0.00 39.62 3.02
421 428 2.678336 GCTTTGCCGTAGCTTATTCAGT 59.322 45.455 0.00 0.00 40.80 3.41
422 429 3.242446 GCTTTGCCGTAGCTTATTCAGTC 60.242 47.826 0.00 0.00 40.80 3.51
423 430 2.203800 TGCCGTAGCTTATTCAGTCG 57.796 50.000 0.00 0.00 40.80 4.18
424 431 1.202371 TGCCGTAGCTTATTCAGTCGG 60.202 52.381 0.00 0.00 40.80 4.79
425 432 1.066605 GCCGTAGCTTATTCAGTCGGA 59.933 52.381 0.00 0.00 36.31 4.55
426 433 2.728922 CCGTAGCTTATTCAGTCGGAC 58.271 52.381 0.00 0.00 36.31 4.79
427 434 2.543238 CCGTAGCTTATTCAGTCGGACC 60.543 54.545 4.14 0.00 36.31 4.46
428 435 2.358267 CGTAGCTTATTCAGTCGGACCT 59.642 50.000 4.14 0.00 0.00 3.85
429 436 2.969628 AGCTTATTCAGTCGGACCTG 57.030 50.000 4.14 3.11 0.00 4.00
430 437 2.180276 AGCTTATTCAGTCGGACCTGT 58.820 47.619 4.14 0.00 34.02 4.00
431 438 2.567615 AGCTTATTCAGTCGGACCTGTT 59.432 45.455 4.14 0.00 34.02 3.16
432 439 2.673368 GCTTATTCAGTCGGACCTGTTG 59.327 50.000 4.14 0.00 34.02 3.33
433 440 2.380084 TATTCAGTCGGACCTGTTGC 57.620 50.000 4.14 0.00 34.02 4.17
434 441 0.321653 ATTCAGTCGGACCTGTTGCC 60.322 55.000 4.14 0.00 34.02 4.52
439 446 2.738521 CGGACCTGTTGCCGTCTG 60.739 66.667 0.00 0.00 42.49 3.51
440 447 3.050275 GGACCTGTTGCCGTCTGC 61.050 66.667 0.00 0.00 41.77 4.26
441 448 2.031163 GACCTGTTGCCGTCTGCT 59.969 61.111 0.00 0.00 42.00 4.24
442 449 2.281070 ACCTGTTGCCGTCTGCTG 60.281 61.111 0.00 0.00 42.00 4.41
443 450 3.052082 CCTGTTGCCGTCTGCTGG 61.052 66.667 0.00 0.00 42.00 4.85
462 469 4.137872 CCGCCAGGCATGCCTTTG 62.138 66.667 36.92 29.01 45.70 2.77
463 470 4.807039 CGCCAGGCATGCCTTTGC 62.807 66.667 36.92 34.95 45.70 3.68
464 471 3.387947 GCCAGGCATGCCTTTGCT 61.388 61.111 35.03 18.00 45.70 3.91
465 472 2.577059 CCAGGCATGCCTTTGCTG 59.423 61.111 36.92 24.60 45.70 4.41
466 473 2.280552 CCAGGCATGCCTTTGCTGT 61.281 57.895 36.92 12.00 45.70 4.40
467 474 1.214589 CAGGCATGCCTTTGCTGTC 59.785 57.895 36.92 6.60 45.70 3.51
468 475 1.228644 AGGCATGCCTTTGCTGTCA 60.229 52.632 34.07 0.00 45.70 3.58
469 476 1.214589 GGCATGCCTTTGCTGTCAG 59.785 57.895 29.98 0.00 42.38 3.51
470 477 1.530013 GGCATGCCTTTGCTGTCAGT 61.530 55.000 29.98 0.00 42.38 3.41
471 478 0.109412 GCATGCCTTTGCTGTCAGTC 60.109 55.000 6.36 0.00 39.57 3.51
472 479 1.241165 CATGCCTTTGCTGTCAGTCA 58.759 50.000 0.93 0.00 38.71 3.41
473 480 1.816835 CATGCCTTTGCTGTCAGTCAT 59.183 47.619 0.93 0.00 38.71 3.06
474 481 1.241165 TGCCTTTGCTGTCAGTCATG 58.759 50.000 0.93 0.00 38.71 3.07
475 482 0.524862 GCCTTTGCTGTCAGTCATGG 59.475 55.000 0.93 6.97 33.53 3.66
476 483 0.524862 CCTTTGCTGTCAGTCATGGC 59.475 55.000 0.93 0.00 0.00 4.40
477 484 0.167470 CTTTGCTGTCAGTCATGGCG 59.833 55.000 0.93 0.00 31.97 5.69
478 485 1.236616 TTTGCTGTCAGTCATGGCGG 61.237 55.000 0.93 0.00 40.61 6.13
479 486 2.110757 TTGCTGTCAGTCATGGCGGA 62.111 55.000 0.00 0.00 40.01 5.54
480 487 2.103042 GCTGTCAGTCATGGCGGAC 61.103 63.158 21.69 21.69 40.01 4.79
481 488 1.293179 CTGTCAGTCATGGCGGACA 59.707 57.895 27.61 27.61 40.01 4.02
482 489 0.320683 CTGTCAGTCATGGCGGACAA 60.321 55.000 28.73 15.72 40.01 3.18
483 490 0.602638 TGTCAGTCATGGCGGACAAC 60.603 55.000 27.45 5.87 39.77 3.32
484 491 0.602638 GTCAGTCATGGCGGACAACA 60.603 55.000 23.19 0.00 40.29 3.33
485 492 0.107643 TCAGTCATGGCGGACAACAA 59.892 50.000 11.06 0.00 40.29 2.83
486 493 0.950836 CAGTCATGGCGGACAACAAA 59.049 50.000 11.06 0.00 40.29 2.83
487 494 1.069022 CAGTCATGGCGGACAACAAAG 60.069 52.381 11.06 0.00 40.29 2.77
488 495 0.951558 GTCATGGCGGACAACAAAGT 59.048 50.000 4.46 0.00 37.73 2.66
489 496 0.950836 TCATGGCGGACAACAAAGTG 59.049 50.000 0.00 0.00 0.00 3.16
490 497 0.664166 CATGGCGGACAACAAAGTGC 60.664 55.000 0.00 0.00 0.00 4.40
491 498 1.805428 ATGGCGGACAACAAAGTGCC 61.805 55.000 0.00 0.00 42.76 5.01
492 499 2.193536 GGCGGACAACAAAGTGCCT 61.194 57.895 0.00 0.00 39.38 4.75
493 500 1.008538 GCGGACAACAAAGTGCCTG 60.009 57.895 0.00 0.00 0.00 4.85
494 501 1.444119 GCGGACAACAAAGTGCCTGA 61.444 55.000 0.00 0.00 0.00 3.86
495 502 1.238439 CGGACAACAAAGTGCCTGAT 58.762 50.000 0.00 0.00 0.00 2.90
496 503 1.608590 CGGACAACAAAGTGCCTGATT 59.391 47.619 0.00 0.00 0.00 2.57
497 504 2.350772 CGGACAACAAAGTGCCTGATTC 60.351 50.000 0.00 0.00 0.00 2.52
498 505 2.029918 GGACAACAAAGTGCCTGATTCC 60.030 50.000 0.00 0.00 0.00 3.01
499 506 2.887152 GACAACAAAGTGCCTGATTCCT 59.113 45.455 0.00 0.00 0.00 3.36
500 507 2.624838 ACAACAAAGTGCCTGATTCCTG 59.375 45.455 0.00 0.00 0.00 3.86
501 508 2.624838 CAACAAAGTGCCTGATTCCTGT 59.375 45.455 0.00 0.00 0.00 4.00
502 509 3.788227 ACAAAGTGCCTGATTCCTGTA 57.212 42.857 0.00 0.00 0.00 2.74
503 510 3.679389 ACAAAGTGCCTGATTCCTGTAG 58.321 45.455 0.00 0.00 0.00 2.74
504 511 3.073062 ACAAAGTGCCTGATTCCTGTAGT 59.927 43.478 0.00 0.00 0.00 2.73
547 554 7.995463 TGTTGTTAGAATTTAAAAGTGTGGC 57.005 32.000 0.00 0.00 0.00 5.01
557 564 0.886490 AAAGTGTGGCGGCTCTTCTG 60.886 55.000 11.43 0.00 0.00 3.02
562 569 1.016653 GTGGCGGCTCTTCTGTCTTC 61.017 60.000 11.43 0.00 0.00 2.87
607 614 7.838991 ATAGATAGATACTCCCTTCCTCTCA 57.161 40.000 0.00 0.00 0.00 3.27
608 615 6.734918 AGATAGATACTCCCTTCCTCTCAT 57.265 41.667 0.00 0.00 0.00 2.90
609 616 7.838991 AGATAGATACTCCCTTCCTCTCATA 57.161 40.000 0.00 0.00 0.00 2.15
610 617 8.238365 AGATAGATACTCCCTTCCTCTCATAA 57.762 38.462 0.00 0.00 0.00 1.90
611 618 8.855952 AGATAGATACTCCCTTCCTCTCATAAT 58.144 37.037 0.00 0.00 0.00 1.28
612 619 8.837099 ATAGATACTCCCTTCCTCTCATAATG 57.163 38.462 0.00 0.00 0.00 1.90
613 620 6.629156 AGATACTCCCTTCCTCTCATAATGT 58.371 40.000 0.00 0.00 0.00 2.71
614 621 7.770662 AGATACTCCCTTCCTCTCATAATGTA 58.229 38.462 0.00 0.00 0.00 2.29
615 622 8.235230 AGATACTCCCTTCCTCTCATAATGTAA 58.765 37.037 0.00 0.00 0.00 2.41
616 623 6.739331 ACTCCCTTCCTCTCATAATGTAAG 57.261 41.667 0.00 0.00 0.00 2.34
617 624 6.444704 ACTCCCTTCCTCTCATAATGTAAGA 58.555 40.000 0.00 0.00 0.00 2.10
618 625 7.079048 ACTCCCTTCCTCTCATAATGTAAGAT 58.921 38.462 0.00 0.00 0.00 2.40
619 626 7.016072 ACTCCCTTCCTCTCATAATGTAAGATG 59.984 40.741 0.00 0.00 0.00 2.90
620 627 6.846505 TCCCTTCCTCTCATAATGTAAGATGT 59.153 38.462 0.00 0.00 0.00 3.06
622 629 7.995488 CCCTTCCTCTCATAATGTAAGATGTTT 59.005 37.037 0.00 0.00 0.00 2.83
623 630 9.401058 CCTTCCTCTCATAATGTAAGATGTTTT 57.599 33.333 0.00 0.00 0.00 2.43
647 3731 1.615883 ACACTGCAGTCGAGAGTGATT 59.384 47.619 18.64 0.00 39.64 2.57
671 3755 5.245075 TGATACACACTCACACATCCAAGTA 59.755 40.000 0.00 0.00 0.00 2.24
689 3773 7.757526 TCCAAGTATTCATTACAATGGAAACG 58.242 34.615 2.26 0.00 41.93 3.60
726 3816 4.740205 CGCTGCATATTGTAGGTATATCCG 59.260 45.833 0.00 0.00 41.99 4.18
769 3859 2.992593 TGCATAACATCGGCCAGTTAA 58.007 42.857 14.18 0.00 34.27 2.01
770 3860 3.550820 TGCATAACATCGGCCAGTTAAT 58.449 40.909 14.18 3.84 34.27 1.40
847 3937 6.968131 TGTTGTTCTGCAATACTCATACTC 57.032 37.500 0.00 0.00 39.55 2.59
848 3938 6.701340 TGTTGTTCTGCAATACTCATACTCT 58.299 36.000 0.00 0.00 39.55 3.24
849 3939 7.836842 TGTTGTTCTGCAATACTCATACTCTA 58.163 34.615 0.00 0.00 39.55 2.43
850 3940 7.759886 TGTTGTTCTGCAATACTCATACTCTAC 59.240 37.037 0.00 0.00 39.55 2.59
851 3941 7.646548 TGTTCTGCAATACTCATACTCTACT 57.353 36.000 0.00 0.00 0.00 2.57
1164 4285 1.300620 CACCGGCGACTTCTTCACA 60.301 57.895 9.30 0.00 0.00 3.58
1329 4459 2.203153 GTGAACCCGCCACACACT 60.203 61.111 0.00 0.00 34.81 3.55
1669 4979 2.159476 CCCAAGAAGTGATTCATGTGCG 60.159 50.000 0.00 0.00 0.00 5.34
1721 5046 2.027024 TGTATCGACGCCGCCATC 59.973 61.111 0.00 0.00 35.37 3.51
1731 5056 2.610374 GACGCCGCCATCAACTAATAAA 59.390 45.455 0.00 0.00 0.00 1.40
1735 5060 3.548818 GCCGCCATCAACTAATAAAGCTG 60.549 47.826 0.00 0.00 0.00 4.24
1815 5141 5.591877 TGAAGTACTATTTACTCCCTCCGTC 59.408 44.000 0.00 0.00 0.00 4.79
1817 5143 2.305009 ACTATTTACTCCCTCCGTCCG 58.695 52.381 0.00 0.00 0.00 4.79
1818 5144 2.092212 ACTATTTACTCCCTCCGTCCGA 60.092 50.000 0.00 0.00 0.00 4.55
1822 5148 0.329261 TACTCCCTCCGTCCGAGAAA 59.671 55.000 0.00 0.00 41.63 2.52
1823 5149 0.966370 ACTCCCTCCGTCCGAGAAAG 60.966 60.000 0.00 0.00 41.63 2.62
1829 5155 0.038526 TCCGTCCGAGAAAGCTTGTC 60.039 55.000 0.00 0.00 0.00 3.18
1831 5157 1.014564 CGTCCGAGAAAGCTTGTCCC 61.015 60.000 0.00 0.00 0.00 4.46
1834 5160 0.321671 CCGAGAAAGCTTGTCCCTCA 59.678 55.000 0.00 0.00 0.00 3.86
1836 5162 2.494059 CGAGAAAGCTTGTCCCTCAAA 58.506 47.619 0.00 0.00 35.48 2.69
1837 5163 3.077359 CGAGAAAGCTTGTCCCTCAAAT 58.923 45.455 0.00 0.00 35.48 2.32
1838 5164 3.120060 CGAGAAAGCTTGTCCCTCAAATG 60.120 47.826 0.00 0.00 35.48 2.32
1839 5165 3.160269 AGAAAGCTTGTCCCTCAAATGG 58.840 45.455 0.00 0.00 35.48 3.16
1842 5168 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
1843 5169 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
1849 5215 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
1850 5216 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
1852 5218 5.012458 TCCCTCAAATGGATGTATCTAGCAG 59.988 44.000 0.00 0.00 0.00 4.24
1854 5220 5.233083 TCAAATGGATGTATCTAGCAGGG 57.767 43.478 0.00 0.00 0.00 4.45
1855 5221 4.660303 TCAAATGGATGTATCTAGCAGGGT 59.340 41.667 0.00 0.00 0.00 4.34
1856 5222 4.630644 AATGGATGTATCTAGCAGGGTG 57.369 45.455 0.00 0.00 0.00 4.61
1869 5235 1.694150 GCAGGGTGCTAGATACATCCA 59.306 52.381 0.00 0.00 41.06 3.41
1871 5237 3.244700 GCAGGGTGCTAGATACATCCATT 60.245 47.826 0.00 0.00 41.06 3.16
1874 5240 4.660303 AGGGTGCTAGATACATCCATTTGA 59.340 41.667 0.00 0.00 41.06 2.69
1875 5241 4.999950 GGGTGCTAGATACATCCATTTGAG 59.000 45.833 0.00 0.00 38.26 3.02
1877 5243 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
1879 5245 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
1880 5246 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
1881 5247 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
1882 5248 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
1883 5249 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1884 5250 1.402968 CATCCATTTGAGGGACAAGCG 59.597 52.381 0.00 0.00 39.77 4.68
1887 5253 0.523072 CATTTGAGGGACAAGCGTGG 59.477 55.000 4.26 0.00 39.77 4.94
1895 5273 0.818040 GGACAAGCGTGGGACAAGTT 60.818 55.000 4.26 0.00 44.16 2.66
1915 5293 1.631405 TTTTCGGACGGAGGGAGTAA 58.369 50.000 0.00 0.00 0.00 2.24
1918 5296 1.972872 TCGGACGGAGGGAGTAATAC 58.027 55.000 0.00 0.00 0.00 1.89
1919 5297 1.492176 TCGGACGGAGGGAGTAATACT 59.508 52.381 0.00 0.00 0.00 2.12
1920 5298 1.607628 CGGACGGAGGGAGTAATACTG 59.392 57.143 0.00 0.00 0.00 2.74
2013 7276 1.860676 TGACGCACGACTAAAAGCTT 58.139 45.000 0.00 0.00 0.00 3.74
2014 7277 2.206750 TGACGCACGACTAAAAGCTTT 58.793 42.857 5.69 5.69 0.00 3.51
2044 7310 9.017509 TGTAGTACTAGTACAACTTAACAGCAT 57.982 33.333 29.87 10.83 38.48 3.79
2167 7465 0.739462 CAACCATCTTCTACGCCGCA 60.739 55.000 0.00 0.00 0.00 5.69
2338 7678 3.625897 CCGTGCCTGTGGAGGACA 61.626 66.667 0.00 0.00 42.93 4.02
2349 7689 1.004745 GTGGAGGACATGGTGGTGATT 59.995 52.381 0.00 0.00 0.00 2.57
2465 7805 2.579201 CGTGATGGCCTCGACCTT 59.421 61.111 3.32 0.00 33.99 3.50
2599 7941 4.742659 GCAACGCCAAAAACAGAGAAAATA 59.257 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
28 29 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
30 31 2.979401 TTTCACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
32 33 4.683781 ACAAAATTTCACACACACACACAC 59.316 37.500 0.00 0.00 0.00 3.82
34 35 4.920340 TGACAAAATTTCACACACACACAC 59.080 37.500 0.00 0.00 0.00 3.82
36 37 6.459257 TTTGACAAAATTTCACACACACAC 57.541 33.333 0.00 0.00 0.00 3.82
38 39 7.737395 TCAATTTGACAAAATTTCACACACAC 58.263 30.769 4.41 0.00 42.14 3.82
40 41 9.212687 CATTCAATTTGACAAAATTTCACACAC 57.787 29.630 4.41 0.00 42.14 3.82
42 43 9.985318 TTCATTCAATTTGACAAAATTTCACAC 57.015 25.926 4.41 0.00 42.14 3.82
108 115 4.093952 CTTTGCCGTCTGCCAGCG 62.094 66.667 2.22 2.22 40.16 5.18
121 128 3.334691 TGGCTGACGGTAAAGATCTTTG 58.665 45.455 27.37 15.10 34.23 2.77
127 134 0.037326 CTGCTGGCTGACGGTAAAGA 60.037 55.000 0.00 0.00 0.00 2.52
135 142 0.880278 TTTGTCGTCTGCTGGCTGAC 60.880 55.000 18.29 18.29 40.15 3.51
139 146 1.963338 AGCTTTGTCGTCTGCTGGC 60.963 57.895 0.00 0.00 34.19 4.85
143 150 0.233332 GTGTCAGCTTTGTCGTCTGC 59.767 55.000 0.00 0.00 0.00 4.26
144 151 0.504384 CGTGTCAGCTTTGTCGTCTG 59.496 55.000 0.00 0.00 0.00 3.51
150 157 0.732571 CAACCACGTGTCAGCTTTGT 59.267 50.000 15.65 0.00 0.00 2.83
170 177 2.270205 CCCAGGCTGCACAGGTAG 59.730 66.667 9.56 0.00 0.00 3.18
171 178 3.329889 CCCCAGGCTGCACAGGTA 61.330 66.667 9.56 0.00 0.00 3.08
174 181 2.894257 TACACCCCAGGCTGCACAG 61.894 63.158 9.56 1.24 0.00 3.66
175 182 2.851588 TACACCCCAGGCTGCACA 60.852 61.111 9.56 0.00 0.00 4.57
176 183 2.359975 GTACACCCCAGGCTGCAC 60.360 66.667 9.56 0.00 0.00 4.57
177 184 2.529136 AGTACACCCCAGGCTGCA 60.529 61.111 9.56 0.00 0.00 4.41
178 185 2.045926 CAGTACACCCCAGGCTGC 60.046 66.667 9.56 0.00 0.00 5.25
179 186 2.671070 CCAGTACACCCCAGGCTG 59.329 66.667 7.75 7.75 0.00 4.85
180 187 2.610859 CCCAGTACACCCCAGGCT 60.611 66.667 0.00 0.00 0.00 4.58
181 188 4.426313 GCCCAGTACACCCCAGGC 62.426 72.222 0.00 0.00 0.00 4.85
182 189 2.610859 AGCCCAGTACACCCCAGG 60.611 66.667 0.00 0.00 0.00 4.45
183 190 2.671070 CAGCCCAGTACACCCCAG 59.329 66.667 0.00 0.00 0.00 4.45
184 191 2.933287 CCAGCCCAGTACACCCCA 60.933 66.667 0.00 0.00 0.00 4.96
185 192 4.426313 GCCAGCCCAGTACACCCC 62.426 72.222 0.00 0.00 0.00 4.95
186 193 4.426313 GGCCAGCCCAGTACACCC 62.426 72.222 0.00 0.00 0.00 4.61
187 194 1.345715 ATAGGCCAGCCCAGTACACC 61.346 60.000 5.01 0.00 36.58 4.16
188 195 0.546598 AATAGGCCAGCCCAGTACAC 59.453 55.000 5.01 0.00 36.58 2.90
189 196 1.064758 CAAATAGGCCAGCCCAGTACA 60.065 52.381 5.01 0.00 36.58 2.90
190 197 1.680338 CAAATAGGCCAGCCCAGTAC 58.320 55.000 5.01 0.00 36.58 2.73
191 198 0.550914 CCAAATAGGCCAGCCCAGTA 59.449 55.000 5.01 0.00 36.58 2.74
192 199 1.307647 CCAAATAGGCCAGCCCAGT 59.692 57.895 5.01 0.00 36.58 4.00
193 200 4.265206 CCAAATAGGCCAGCCCAG 57.735 61.111 5.01 0.00 36.58 4.45
211 218 0.166814 GCTAGTTGACGGCAAAGCTG 59.833 55.000 18.47 5.46 41.29 4.24
212 219 0.035458 AGCTAGTTGACGGCAAAGCT 59.965 50.000 21.88 21.88 41.19 3.74
213 220 0.166814 CAGCTAGTTGACGGCAAAGC 59.833 55.000 18.15 18.15 37.87 3.51
214 221 1.461127 GTCAGCTAGTTGACGGCAAAG 59.539 52.381 21.79 0.59 38.23 2.77
215 222 1.508632 GTCAGCTAGTTGACGGCAAA 58.491 50.000 21.79 0.00 38.23 3.68
216 223 3.210857 GTCAGCTAGTTGACGGCAA 57.789 52.632 21.79 0.00 38.23 4.52
217 224 4.988065 GTCAGCTAGTTGACGGCA 57.012 55.556 21.79 0.00 38.23 5.69
221 228 1.461127 CTTTGCCGTCAGCTAGTTGAC 59.539 52.381 25.13 25.13 44.23 3.18
222 229 1.343142 TCTTTGCCGTCAGCTAGTTGA 59.657 47.619 5.01 5.01 44.23 3.18
223 230 1.461127 GTCTTTGCCGTCAGCTAGTTG 59.539 52.381 0.00 0.00 44.23 3.16
224 231 1.608283 GGTCTTTGCCGTCAGCTAGTT 60.608 52.381 0.00 0.00 44.23 2.24
225 232 0.037232 GGTCTTTGCCGTCAGCTAGT 60.037 55.000 0.00 0.00 44.23 2.57
226 233 0.247736 AGGTCTTTGCCGTCAGCTAG 59.752 55.000 0.00 0.00 44.23 3.42
227 234 0.685097 AAGGTCTTTGCCGTCAGCTA 59.315 50.000 0.00 0.00 44.23 3.32
228 235 0.179018 AAAGGTCTTTGCCGTCAGCT 60.179 50.000 0.00 0.00 44.23 4.24
229 236 0.040067 CAAAGGTCTTTGCCGTCAGC 60.040 55.000 10.05 0.00 42.66 4.26
249 256 3.985877 TGGCAGACGGCAAAGATG 58.014 55.556 0.00 0.00 46.20 2.90
264 271 2.979676 TGCTTTGCCGTCAGCTGG 60.980 61.111 15.13 0.00 44.23 4.85
265 272 2.253452 GTGCTTTGCCGTCAGCTG 59.747 61.111 7.63 7.63 44.23 4.24
266 273 3.349006 CGTGCTTTGCCGTCAGCT 61.349 61.111 0.00 0.00 44.23 4.24
267 274 3.181169 AACGTGCTTTGCCGTCAGC 62.181 57.895 0.00 0.00 44.14 4.26
268 275 1.369209 CAACGTGCTTTGCCGTCAG 60.369 57.895 0.00 1.35 35.28 3.51
269 276 1.649390 AACAACGTGCTTTGCCGTCA 61.649 50.000 0.00 0.00 35.28 4.35
270 277 0.305313 TAACAACGTGCTTTGCCGTC 59.695 50.000 0.00 0.00 35.28 4.79
271 278 0.733729 TTAACAACGTGCTTTGCCGT 59.266 45.000 0.00 0.00 37.13 5.68
272 279 1.117234 GTTAACAACGTGCTTTGCCG 58.883 50.000 0.00 0.00 0.00 5.69
273 280 1.483316 GGTTAACAACGTGCTTTGCC 58.517 50.000 8.10 0.00 0.00 4.52
274 281 1.066454 AGGGTTAACAACGTGCTTTGC 59.934 47.619 8.10 0.00 0.00 3.68
275 282 3.430333 AAGGGTTAACAACGTGCTTTG 57.570 42.857 8.10 0.00 0.00 2.77
276 283 4.496175 CGTTAAGGGTTAACAACGTGCTTT 60.496 41.667 16.51 1.71 44.40 3.51
277 284 3.002553 CGTTAAGGGTTAACAACGTGCTT 59.997 43.478 16.51 0.00 44.40 3.91
278 285 2.545106 CGTTAAGGGTTAACAACGTGCT 59.455 45.455 16.51 0.00 44.40 4.40
279 286 2.349722 CCGTTAAGGGTTAACAACGTGC 60.350 50.000 20.65 0.00 44.40 5.34
280 287 3.524763 CCGTTAAGGGTTAACAACGTG 57.475 47.619 20.65 12.34 44.40 4.49
292 299 0.252197 ACAGCTTAGGCCCGTTAAGG 59.748 55.000 11.16 0.38 39.73 2.69
293 300 1.066430 TGACAGCTTAGGCCCGTTAAG 60.066 52.381 0.00 1.99 39.73 1.85
294 301 0.978151 TGACAGCTTAGGCCCGTTAA 59.022 50.000 0.00 0.00 39.73 2.01
295 302 0.248289 GTGACAGCTTAGGCCCGTTA 59.752 55.000 0.00 0.00 39.73 3.18
296 303 1.003718 GTGACAGCTTAGGCCCGTT 60.004 57.895 0.00 0.00 39.73 4.44
297 304 2.663196 GTGACAGCTTAGGCCCGT 59.337 61.111 0.00 0.00 39.73 5.28
298 305 2.509336 CGTGACAGCTTAGGCCCG 60.509 66.667 0.00 0.00 39.73 6.13
299 306 1.741770 CACGTGACAGCTTAGGCCC 60.742 63.158 10.90 0.00 39.73 5.80
300 307 1.004918 ACACGTGACAGCTTAGGCC 60.005 57.895 25.01 0.00 39.73 5.19
301 308 1.901650 GCACACGTGACAGCTTAGGC 61.902 60.000 25.01 7.28 39.06 3.93
302 309 1.291877 GGCACACGTGACAGCTTAGG 61.292 60.000 25.01 0.99 38.82 2.69
303 310 1.617755 CGGCACACGTGACAGCTTAG 61.618 60.000 25.01 13.59 38.95 2.18
304 311 1.663388 CGGCACACGTGACAGCTTA 60.663 57.895 25.01 0.00 38.95 3.09
305 312 2.967076 CGGCACACGTGACAGCTT 60.967 61.111 25.01 0.00 38.95 3.74
315 322 0.249911 AAAGAGTCTGGACGGCACAC 60.250 55.000 0.00 0.00 36.20 3.82
316 323 0.249868 CAAAGAGTCTGGACGGCACA 60.250 55.000 0.00 0.00 36.20 4.57
317 324 1.569479 GCAAAGAGTCTGGACGGCAC 61.569 60.000 0.00 0.00 36.20 5.01
318 325 1.301716 GCAAAGAGTCTGGACGGCA 60.302 57.895 0.00 0.00 36.20 5.69
319 326 2.035442 GGCAAAGAGTCTGGACGGC 61.035 63.158 0.00 0.00 36.20 5.68
320 327 1.738099 CGGCAAAGAGTCTGGACGG 60.738 63.158 11.51 0.00 36.20 4.79
321 328 1.006102 ACGGCAAAGAGTCTGGACG 60.006 57.895 16.44 16.44 36.20 4.79
322 329 0.318762 AGACGGCAAAGAGTCTGGAC 59.681 55.000 0.00 0.00 45.03 4.02
323 330 2.746697 AGACGGCAAAGAGTCTGGA 58.253 52.632 0.00 0.00 45.03 3.86
329 336 4.604913 TCTGCTAGCAGACGGCAAAGAG 62.605 54.545 37.64 13.84 46.80 2.85
330 337 2.769270 TCTGCTAGCAGACGGCAAAGA 61.769 52.381 37.64 17.11 46.80 2.52
331 338 0.390340 TCTGCTAGCAGACGGCAAAG 60.390 55.000 37.64 15.06 46.80 2.77
332 339 1.671166 TCTGCTAGCAGACGGCAAA 59.329 52.632 37.64 18.34 46.80 3.68
333 340 3.376546 TCTGCTAGCAGACGGCAA 58.623 55.556 37.64 19.05 46.80 4.52
340 347 1.364626 CCTTTGCCGTCTGCTAGCAG 61.365 60.000 34.48 34.48 44.86 4.24
341 348 1.375908 CCTTTGCCGTCTGCTAGCA 60.376 57.895 18.22 18.22 42.00 3.49
342 349 2.754995 GCCTTTGCCGTCTGCTAGC 61.755 63.158 8.10 8.10 42.00 3.42
343 350 3.490890 GCCTTTGCCGTCTGCTAG 58.509 61.111 0.00 0.00 42.00 3.42
355 362 2.288395 CGACAAAGATGCAAAGGCCTTT 60.288 45.455 25.47 25.47 40.13 3.11
356 363 1.270550 CGACAAAGATGCAAAGGCCTT 59.729 47.619 13.78 13.78 40.13 4.35
357 364 0.883833 CGACAAAGATGCAAAGGCCT 59.116 50.000 0.00 0.00 40.13 5.19
358 365 0.598065 ACGACAAAGATGCAAAGGCC 59.402 50.000 0.00 0.00 40.13 5.19
359 366 1.401539 GGACGACAAAGATGCAAAGGC 60.402 52.381 0.00 0.00 41.68 4.35
360 367 1.879380 TGGACGACAAAGATGCAAAGG 59.121 47.619 0.00 0.00 0.00 3.11
361 368 2.350772 GGTGGACGACAAAGATGCAAAG 60.351 50.000 0.00 0.00 0.00 2.77
362 369 1.606668 GGTGGACGACAAAGATGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
363 370 1.234821 GGTGGACGACAAAGATGCAA 58.765 50.000 0.00 0.00 0.00 4.08
364 371 0.107643 TGGTGGACGACAAAGATGCA 59.892 50.000 0.00 0.00 0.00 3.96
365 372 0.798776 CTGGTGGACGACAAAGATGC 59.201 55.000 0.00 0.00 0.00 3.91
366 373 0.798776 GCTGGTGGACGACAAAGATG 59.201 55.000 0.00 0.00 0.00 2.90
367 374 0.396435 TGCTGGTGGACGACAAAGAT 59.604 50.000 0.00 0.00 0.00 2.40
368 375 0.249868 CTGCTGGTGGACGACAAAGA 60.250 55.000 0.00 0.00 0.00 2.52
369 376 0.249868 TCTGCTGGTGGACGACAAAG 60.250 55.000 0.00 0.00 0.00 2.77
370 377 0.531974 GTCTGCTGGTGGACGACAAA 60.532 55.000 0.00 0.00 0.00 2.83
371 378 1.069090 GTCTGCTGGTGGACGACAA 59.931 57.895 0.00 0.00 0.00 3.18
372 379 2.734591 GTCTGCTGGTGGACGACA 59.265 61.111 0.00 0.00 0.00 4.35
376 383 3.825160 TTGCCGTCTGCTGGTGGAC 62.825 63.158 6.28 0.00 42.00 4.02
377 384 3.113514 TTTGCCGTCTGCTGGTGGA 62.114 57.895 6.28 0.00 42.00 4.02
378 385 2.594303 TTTGCCGTCTGCTGGTGG 60.594 61.111 0.00 0.00 42.00 4.61
379 386 1.572085 CTCTTTGCCGTCTGCTGGTG 61.572 60.000 0.00 0.00 42.00 4.17
380 387 1.302033 CTCTTTGCCGTCTGCTGGT 60.302 57.895 0.00 0.00 42.00 4.00
381 388 2.037136 CCTCTTTGCCGTCTGCTGG 61.037 63.158 0.00 0.00 42.00 4.85
382 389 2.037136 CCCTCTTTGCCGTCTGCTG 61.037 63.158 0.00 0.00 42.00 4.41
383 390 2.348998 CCCTCTTTGCCGTCTGCT 59.651 61.111 0.00 0.00 42.00 4.24
384 391 3.435186 GCCCTCTTTGCCGTCTGC 61.435 66.667 0.00 0.00 41.77 4.26
385 392 0.890996 AAAGCCCTCTTTGCCGTCTG 60.891 55.000 0.00 0.00 40.77 3.51
386 393 1.456287 AAAGCCCTCTTTGCCGTCT 59.544 52.632 0.00 0.00 40.77 4.18
387 394 4.081050 AAAGCCCTCTTTGCCGTC 57.919 55.556 0.00 0.00 40.77 4.79
399 406 2.014128 TGAATAAGCTACGGCAAAGCC 58.986 47.619 4.58 0.00 46.75 4.35
400 407 2.678336 ACTGAATAAGCTACGGCAAAGC 59.322 45.455 0.00 0.00 41.70 3.51
401 408 3.000322 CGACTGAATAAGCTACGGCAAAG 60.000 47.826 0.00 0.00 41.70 2.77
402 409 2.927477 CGACTGAATAAGCTACGGCAAA 59.073 45.455 0.00 0.00 41.70 3.68
403 410 2.536365 CGACTGAATAAGCTACGGCAA 58.464 47.619 0.00 0.00 41.70 4.52
404 411 1.202371 CCGACTGAATAAGCTACGGCA 60.202 52.381 0.00 0.00 41.70 5.69
405 412 1.066605 TCCGACTGAATAAGCTACGGC 59.933 52.381 0.00 0.00 39.01 5.68
406 413 2.543238 GGTCCGACTGAATAAGCTACGG 60.543 54.545 0.00 0.00 39.86 4.02
407 414 2.358267 AGGTCCGACTGAATAAGCTACG 59.642 50.000 0.00 0.00 0.00 3.51
408 415 3.130693 ACAGGTCCGACTGAATAAGCTAC 59.869 47.826 8.40 0.00 40.97 3.58
409 416 3.362706 ACAGGTCCGACTGAATAAGCTA 58.637 45.455 8.40 0.00 40.97 3.32
410 417 2.180276 ACAGGTCCGACTGAATAAGCT 58.820 47.619 8.40 0.00 40.97 3.74
411 418 2.673368 CAACAGGTCCGACTGAATAAGC 59.327 50.000 8.40 0.00 40.97 3.09
412 419 2.673368 GCAACAGGTCCGACTGAATAAG 59.327 50.000 8.40 0.00 40.97 1.73
413 420 2.614481 GGCAACAGGTCCGACTGAATAA 60.614 50.000 8.40 0.00 40.97 1.40
414 421 1.066430 GGCAACAGGTCCGACTGAATA 60.066 52.381 8.40 0.00 40.97 1.75
415 422 0.321653 GGCAACAGGTCCGACTGAAT 60.322 55.000 8.40 0.00 40.97 2.57
416 423 1.070786 GGCAACAGGTCCGACTGAA 59.929 57.895 8.40 0.00 40.97 3.02
417 424 2.741092 GGCAACAGGTCCGACTGA 59.259 61.111 8.40 0.00 40.97 3.41
423 430 3.050275 GCAGACGGCAACAGGTCC 61.050 66.667 0.00 0.00 43.97 4.46
452 459 0.109412 GACTGACAGCAAAGGCATGC 60.109 55.000 9.90 9.90 46.78 4.06
453 460 1.241165 TGACTGACAGCAAAGGCATG 58.759 50.000 1.25 0.00 44.61 4.06
454 461 1.816835 CATGACTGACAGCAAAGGCAT 59.183 47.619 1.25 0.00 43.11 4.40
455 462 1.241165 CATGACTGACAGCAAAGGCA 58.759 50.000 1.25 0.00 44.61 4.75
456 463 0.524862 CCATGACTGACAGCAAAGGC 59.475 55.000 1.25 0.00 41.61 4.35
457 464 0.524862 GCCATGACTGACAGCAAAGG 59.475 55.000 1.25 9.21 0.00 3.11
458 465 0.167470 CGCCATGACTGACAGCAAAG 59.833 55.000 1.25 0.00 0.00 2.77
459 466 1.236616 CCGCCATGACTGACAGCAAA 61.237 55.000 1.25 0.00 0.00 3.68
460 467 1.672030 CCGCCATGACTGACAGCAA 60.672 57.895 1.25 0.00 0.00 3.91
461 468 2.046988 CCGCCATGACTGACAGCA 60.047 61.111 1.25 2.12 0.00 4.41
462 469 2.103042 GTCCGCCATGACTGACAGC 61.103 63.158 1.25 0.00 32.39 4.40
463 470 0.320683 TTGTCCGCCATGACTGACAG 60.321 55.000 6.40 0.00 38.79 3.51
464 471 0.602638 GTTGTCCGCCATGACTGACA 60.603 55.000 2.20 2.20 36.21 3.58
465 472 0.602638 TGTTGTCCGCCATGACTGAC 60.603 55.000 0.00 0.00 36.21 3.51
466 473 0.107643 TTGTTGTCCGCCATGACTGA 59.892 50.000 0.00 0.00 36.21 3.41
467 474 0.950836 TTTGTTGTCCGCCATGACTG 59.049 50.000 0.00 0.00 36.21 3.51
468 475 1.238439 CTTTGTTGTCCGCCATGACT 58.762 50.000 0.00 0.00 36.21 3.41
469 476 0.951558 ACTTTGTTGTCCGCCATGAC 59.048 50.000 0.00 0.00 35.77 3.06
470 477 0.950836 CACTTTGTTGTCCGCCATGA 59.049 50.000 0.00 0.00 0.00 3.07
471 478 0.664166 GCACTTTGTTGTCCGCCATG 60.664 55.000 0.00 0.00 0.00 3.66
472 479 1.659794 GCACTTTGTTGTCCGCCAT 59.340 52.632 0.00 0.00 0.00 4.40
473 480 2.485795 GGCACTTTGTTGTCCGCCA 61.486 57.895 0.00 0.00 39.38 5.69
474 481 2.193536 AGGCACTTTGTTGTCCGCC 61.194 57.895 0.00 0.00 39.90 6.13
475 482 1.008538 CAGGCACTTTGTTGTCCGC 60.009 57.895 0.00 0.00 34.60 5.54
476 483 1.238439 ATCAGGCACTTTGTTGTCCG 58.762 50.000 0.00 0.00 34.60 4.79
477 484 2.029918 GGAATCAGGCACTTTGTTGTCC 60.030 50.000 0.00 0.00 34.60 4.02
478 485 2.887152 AGGAATCAGGCACTTTGTTGTC 59.113 45.455 0.00 0.00 34.60 3.18
479 486 2.624838 CAGGAATCAGGCACTTTGTTGT 59.375 45.455 0.00 0.00 34.60 3.32
480 487 2.624838 ACAGGAATCAGGCACTTTGTTG 59.375 45.455 0.00 0.00 34.60 3.33
481 488 2.949447 ACAGGAATCAGGCACTTTGTT 58.051 42.857 0.00 0.00 34.60 2.83
482 489 2.664402 ACAGGAATCAGGCACTTTGT 57.336 45.000 0.00 0.00 34.60 2.83
483 490 3.438087 CACTACAGGAATCAGGCACTTTG 59.562 47.826 0.00 0.00 34.60 2.77
484 491 3.327757 TCACTACAGGAATCAGGCACTTT 59.672 43.478 0.00 0.00 34.60 2.66
485 492 2.906389 TCACTACAGGAATCAGGCACTT 59.094 45.455 0.00 0.00 34.60 3.16
486 493 2.540383 TCACTACAGGAATCAGGCACT 58.460 47.619 0.00 0.00 43.88 4.40
487 494 3.550437 ATCACTACAGGAATCAGGCAC 57.450 47.619 0.00 0.00 0.00 5.01
488 495 3.388024 GGTATCACTACAGGAATCAGGCA 59.612 47.826 0.00 0.00 0.00 4.75
489 496 3.388024 TGGTATCACTACAGGAATCAGGC 59.612 47.826 0.00 0.00 0.00 4.85
490 497 5.545588 CATGGTATCACTACAGGAATCAGG 58.454 45.833 0.00 0.00 0.00 3.86
491 498 4.993584 GCATGGTATCACTACAGGAATCAG 59.006 45.833 0.00 0.00 0.00 2.90
492 499 4.408596 TGCATGGTATCACTACAGGAATCA 59.591 41.667 0.00 0.00 0.00 2.57
493 500 4.752101 GTGCATGGTATCACTACAGGAATC 59.248 45.833 0.00 0.00 0.00 2.52
494 501 4.164030 TGTGCATGGTATCACTACAGGAAT 59.836 41.667 0.00 0.00 34.49 3.01
495 502 3.517500 TGTGCATGGTATCACTACAGGAA 59.482 43.478 0.00 0.00 34.49 3.36
496 503 3.103742 TGTGCATGGTATCACTACAGGA 58.896 45.455 0.00 0.00 34.49 3.86
497 504 3.541996 TGTGCATGGTATCACTACAGG 57.458 47.619 0.00 0.00 34.49 4.00
498 505 6.441093 AAAATGTGCATGGTATCACTACAG 57.559 37.500 0.00 0.00 34.49 2.74
499 506 6.832520 AAAAATGTGCATGGTATCACTACA 57.167 33.333 0.00 0.00 34.49 2.74
533 540 2.514803 AGAGCCGCCACACTTTTAAAT 58.485 42.857 0.00 0.00 0.00 1.40
547 554 6.980978 TCATAAAATAGAAGACAGAAGAGCCG 59.019 38.462 0.00 0.00 0.00 5.52
584 591 7.838991 ATGAGAGGAAGGGAGTATCTATCTA 57.161 40.000 0.00 0.00 33.73 1.98
585 592 6.734918 ATGAGAGGAAGGGAGTATCTATCT 57.265 41.667 0.00 0.00 33.73 1.98
586 593 8.912988 CATTATGAGAGGAAGGGAGTATCTATC 58.087 40.741 0.00 0.00 33.73 2.08
587 594 8.405850 ACATTATGAGAGGAAGGGAGTATCTAT 58.594 37.037 0.00 0.00 33.73 1.98
588 595 7.770662 ACATTATGAGAGGAAGGGAGTATCTA 58.229 38.462 0.00 0.00 33.73 1.98
589 596 6.629156 ACATTATGAGAGGAAGGGAGTATCT 58.371 40.000 0.00 0.00 33.73 1.98
590 597 6.926630 ACATTATGAGAGGAAGGGAGTATC 57.073 41.667 0.00 0.00 0.00 2.24
591 598 8.235230 TCTTACATTATGAGAGGAAGGGAGTAT 58.765 37.037 0.00 0.00 0.00 2.12
592 599 7.592736 TCTTACATTATGAGAGGAAGGGAGTA 58.407 38.462 0.00 0.00 0.00 2.59
593 600 6.444704 TCTTACATTATGAGAGGAAGGGAGT 58.555 40.000 0.00 0.00 0.00 3.85
594 601 6.985653 TCTTACATTATGAGAGGAAGGGAG 57.014 41.667 0.00 0.00 0.00 4.30
595 602 6.846505 ACATCTTACATTATGAGAGGAAGGGA 59.153 38.462 0.00 0.00 29.81 4.20
596 603 7.072263 ACATCTTACATTATGAGAGGAAGGG 57.928 40.000 0.00 0.00 29.81 3.95
597 604 8.970859 AAACATCTTACATTATGAGAGGAAGG 57.029 34.615 0.00 0.00 29.81 3.46
622 629 2.159099 ACTCTCGACTGCAGTGTCAAAA 60.159 45.455 27.27 3.58 36.82 2.44
623 630 1.409064 ACTCTCGACTGCAGTGTCAAA 59.591 47.619 27.27 4.72 36.82 2.69
626 633 0.593618 TCACTCTCGACTGCAGTGTC 59.406 55.000 27.27 10.35 38.94 3.67
627 634 1.252175 ATCACTCTCGACTGCAGTGT 58.748 50.000 27.27 12.89 38.94 3.55
628 635 1.991264 CAATCACTCTCGACTGCAGTG 59.009 52.381 27.27 16.50 39.18 3.66
629 636 1.889170 TCAATCACTCTCGACTGCAGT 59.111 47.619 21.88 21.88 0.00 4.40
630 637 2.643933 TCAATCACTCTCGACTGCAG 57.356 50.000 13.48 13.48 0.00 4.41
632 639 3.794028 GTGTATCAATCACTCTCGACTGC 59.206 47.826 0.00 0.00 33.59 4.40
633 640 4.795795 GTGTGTATCAATCACTCTCGACTG 59.204 45.833 0.00 0.00 36.83 3.51
647 3731 4.040339 ACTTGGATGTGTGAGTGTGTATCA 59.960 41.667 0.00 0.00 0.00 2.15
689 3773 6.743575 ATATGCAGCGTAGGATTTATTTCC 57.256 37.500 0.00 0.00 35.90 3.13
769 3859 6.550938 TGACACACATCTGAGGAAGAATAT 57.449 37.500 0.00 0.00 38.79 1.28
770 3860 6.358974 TTGACACACATCTGAGGAAGAATA 57.641 37.500 0.00 0.00 38.79 1.75
847 3937 5.050295 GTTTGAGAAACCAAGGACGAAGTAG 60.050 44.000 0.00 0.00 36.60 2.57
848 3938 4.812626 GTTTGAGAAACCAAGGACGAAGTA 59.187 41.667 0.00 0.00 36.60 2.24
849 3939 3.626217 GTTTGAGAAACCAAGGACGAAGT 59.374 43.478 0.00 0.00 38.54 3.01
850 3940 3.877508 AGTTTGAGAAACCAAGGACGAAG 59.122 43.478 0.00 0.00 42.34 3.79
851 3941 3.875134 GAGTTTGAGAAACCAAGGACGAA 59.125 43.478 0.00 0.00 42.34 3.85
926 4020 2.030805 GCTGTGGTGAAGATGTTGAACC 60.031 50.000 0.00 0.00 0.00 3.62
1180 4304 1.701545 ATCGGCATGGTAACGTTGCG 61.702 55.000 11.99 3.12 46.13 4.85
1181 4305 0.248054 CATCGGCATGGTAACGTTGC 60.248 55.000 11.99 9.89 44.90 4.17
1186 4316 0.884704 ATCGGCATCGGCATGGTAAC 60.885 55.000 0.00 0.00 43.71 2.50
1216 4346 2.036733 CCTTGGTCACCGTGAAGTTCTA 59.963 50.000 1.88 0.00 0.00 2.10
1281 4411 1.448985 GGAACTTGAGCATGGCGTAA 58.551 50.000 0.00 0.00 0.00 3.18
1669 4979 3.539604 AGAGCAACAAGAGCATGTATCC 58.460 45.455 0.00 0.00 32.02 2.59
1735 5060 4.645762 TCATCATCACTCACTAGCTCAC 57.354 45.455 0.00 0.00 0.00 3.51
1792 5117 5.009510 GGACGGAGGGAGTAAATAGTACTTC 59.990 48.000 0.00 0.00 0.00 3.01
1793 5118 4.892345 GGACGGAGGGAGTAAATAGTACTT 59.108 45.833 0.00 0.00 0.00 2.24
1795 5120 3.251972 CGGACGGAGGGAGTAAATAGTAC 59.748 52.174 0.00 0.00 0.00 2.73
1796 5121 3.136443 TCGGACGGAGGGAGTAAATAGTA 59.864 47.826 0.00 0.00 0.00 1.82
1797 5122 2.092212 TCGGACGGAGGGAGTAAATAGT 60.092 50.000 0.00 0.00 0.00 2.12
1798 5123 2.553172 CTCGGACGGAGGGAGTAAATAG 59.447 54.545 2.13 0.00 39.22 1.73
1800 5125 1.064166 TCTCGGACGGAGGGAGTAAAT 60.064 52.381 9.88 0.00 43.34 1.40
1802 5127 0.329261 TTCTCGGACGGAGGGAGTAA 59.671 55.000 9.88 0.00 43.34 2.24
1815 5141 0.321671 TGAGGGACAAGCTTTCTCGG 59.678 55.000 0.00 0.00 0.00 4.63
1817 5143 3.192212 CCATTTGAGGGACAAGCTTTCTC 59.808 47.826 0.00 2.68 39.77 2.87
1818 5144 3.160269 CCATTTGAGGGACAAGCTTTCT 58.840 45.455 0.00 0.00 39.77 2.52
1822 5148 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
1823 5149 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1829 5155 5.233083 TGCTAGATACATCCATTTGAGGG 57.767 43.478 0.00 0.00 0.00 4.30
1831 5157 5.221803 ACCCTGCTAGATACATCCATTTGAG 60.222 44.000 0.00 0.00 0.00 3.02
1834 5160 4.747931 GCACCCTGCTAGATACATCCATTT 60.748 45.833 0.00 0.00 40.96 2.32
1836 5162 2.304180 GCACCCTGCTAGATACATCCAT 59.696 50.000 0.00 0.00 40.96 3.41
1837 5163 1.694150 GCACCCTGCTAGATACATCCA 59.306 52.381 0.00 0.00 40.96 3.41
1838 5164 2.464157 GCACCCTGCTAGATACATCC 57.536 55.000 0.00 0.00 40.96 3.51
1849 5215 1.694150 TGGATGTATCTAGCACCCTGC 59.306 52.381 0.00 0.00 45.46 4.85
1850 5216 4.630644 AATGGATGTATCTAGCACCCTG 57.369 45.455 0.00 0.00 0.00 4.45
1852 5218 4.973168 TCAAATGGATGTATCTAGCACCC 58.027 43.478 0.00 0.00 0.00 4.61
1854 5220 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
1855 5221 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
1856 5222 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
1860 5226 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
1869 5235 0.609131 CCCACGCTTGTCCCTCAAAT 60.609 55.000 0.00 0.00 35.48 2.32
1871 5237 2.144078 TCCCACGCTTGTCCCTCAA 61.144 57.895 0.00 0.00 34.61 3.02
1874 5240 2.397413 CTTGTCCCACGCTTGTCCCT 62.397 60.000 0.00 0.00 0.00 4.20
1875 5241 1.966451 CTTGTCCCACGCTTGTCCC 60.966 63.158 0.00 0.00 0.00 4.46
1877 5243 1.021968 AAACTTGTCCCACGCTTGTC 58.978 50.000 0.00 0.00 0.00 3.18
1879 5245 2.577449 AAAAACTTGTCCCACGCTTG 57.423 45.000 0.00 0.00 0.00 4.01
1895 5273 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
1899 5277 1.492176 AGTATTACTCCCTCCGTCCGA 59.508 52.381 0.00 0.00 0.00 4.55
1900 5278 1.607628 CAGTATTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
1902 5280 2.223758 GCACAGTATTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
1915 5293 4.453478 CAGACATCACAACAAGCACAGTAT 59.547 41.667 0.00 0.00 0.00 2.12
1918 5296 2.874086 TCAGACATCACAACAAGCACAG 59.126 45.455 0.00 0.00 0.00 3.66
1919 5297 2.874086 CTCAGACATCACAACAAGCACA 59.126 45.455 0.00 0.00 0.00 4.57
1920 5298 2.874701 ACTCAGACATCACAACAAGCAC 59.125 45.455 0.00 0.00 0.00 4.40
2044 7310 3.879892 TCACGGTGTTCATTTGTGATTGA 59.120 39.130 8.17 0.00 34.85 2.57
2167 7465 3.991051 CGCCACCACCACTCTCGT 61.991 66.667 0.00 0.00 0.00 4.18
2191 7489 2.742372 GCACAAGACCGCGACCAT 60.742 61.111 8.23 0.00 0.00 3.55
2192 7490 4.980805 GGCACAAGACCGCGACCA 62.981 66.667 8.23 0.00 0.00 4.02
2320 7660 3.626924 GTCCTCCACAGGCACGGT 61.627 66.667 0.00 0.00 40.12 4.83
2338 7678 0.112995 AGCACCACAATCACCACCAT 59.887 50.000 0.00 0.00 0.00 3.55
2452 7792 3.470888 CGGGAAGGTCGAGGCCAT 61.471 66.667 5.01 0.00 0.00 4.40
2572 7912 1.203523 TCTGTTTTTGGCGTTGCAGTT 59.796 42.857 0.00 0.00 0.00 3.16
2599 7941 1.163420 TGTTCACGACGCCAATGCTT 61.163 50.000 0.00 0.00 34.43 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.