Multiple sequence alignment - TraesCS5B01G312300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G312300 chr5B 100.000 2702 0 0 1 2702 493930402 493933103 0.000000e+00 4990.0
1 TraesCS5B01G312300 chr5B 79.506 932 140 27 809 1700 493673854 493674774 1.370000e-172 616.0
2 TraesCS5B01G312300 chr5B 84.123 359 53 4 1068 1424 492619519 492619875 7.160000e-91 344.0
3 TraesCS5B01G312300 chr5D 89.885 2264 156 34 324 2523 411626898 411629152 0.000000e+00 2844.0
4 TraesCS5B01G312300 chr5D 79.807 931 139 24 809 1700 411196545 411197465 1.370000e-177 632.0
5 TraesCS5B01G312300 chr5D 85.410 329 43 5 1067 1393 410444223 410444548 1.200000e-88 337.0
6 TraesCS5B01G312300 chr5D 81.000 300 53 4 1 299 376718478 376718774 4.500000e-58 235.0
7 TraesCS5B01G312300 chr5A 91.357 2071 114 30 591 2613 523449642 523451695 0.000000e+00 2772.0
8 TraesCS5B01G312300 chr5A 80.130 926 142 21 809 1700 523136502 523137419 0.000000e+00 652.0
9 TraesCS5B01G312300 chr5A 76.727 666 114 26 1045 1678 523148721 523148065 1.550000e-87 333.0
10 TraesCS5B01G312300 chr5A 83.333 366 51 8 1067 1424 522066671 522067034 2.010000e-86 329.0
11 TraesCS5B01G312300 chr5A 100.000 46 0 0 427 472 523449152 523449197 4.790000e-13 86.1
12 TraesCS5B01G312300 chr4D 86.122 245 28 6 1 245 296269563 296269801 2.670000e-65 259.0
13 TraesCS5B01G312300 chr2D 82.034 295 48 5 1 292 486960699 486960407 2.080000e-61 246.0
14 TraesCS5B01G312300 chr6D 81.579 304 47 9 1 300 56836548 56836250 2.690000e-60 243.0
15 TraesCS5B01G312300 chr6D 79.939 329 54 11 1 324 24453077 24453398 5.820000e-57 231.0
16 TraesCS5B01G312300 chr7A 81.979 283 45 6 1 281 612587476 612587198 4.500000e-58 235.0
17 TraesCS5B01G312300 chr2B 84.146 246 36 3 1 244 725158746 725158990 4.500000e-58 235.0
18 TraesCS5B01G312300 chr2B 94.595 37 2 0 2663 2699 38259012 38258976 1.040000e-04 58.4
19 TraesCS5B01G312300 chr7D 79.688 320 57 6 1 315 623613035 623612719 9.740000e-55 224.0
20 TraesCS5B01G312300 chr7D 85.526 76 11 0 2616 2691 515819817 515819742 2.230000e-11 80.5
21 TraesCS5B01G312300 chr3D 80.068 296 52 4 1 295 503393895 503394184 2.110000e-51 213.0
22 TraesCS5B01G312300 chr3D 90.000 50 5 0 2616 2665 303591314 303591265 6.240000e-07 65.8
23 TraesCS5B01G312300 chr3B 85.714 77 11 0 2616 2692 417715598 417715674 6.200000e-12 82.4
24 TraesCS5B01G312300 chr6A 88.889 54 6 0 2616 2669 326736754 326736701 1.740000e-07 67.6
25 TraesCS5B01G312300 chr4A 91.111 45 4 0 2631 2675 670852693 670852737 8.080000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G312300 chr5B 493930402 493933103 2701 False 4990.00 4990 100.0000 1 2702 1 chr5B.!!$F3 2701
1 TraesCS5B01G312300 chr5B 493673854 493674774 920 False 616.00 616 79.5060 809 1700 1 chr5B.!!$F2 891
2 TraesCS5B01G312300 chr5D 411626898 411629152 2254 False 2844.00 2844 89.8850 324 2523 1 chr5D.!!$F4 2199
3 TraesCS5B01G312300 chr5D 411196545 411197465 920 False 632.00 632 79.8070 809 1700 1 chr5D.!!$F3 891
4 TraesCS5B01G312300 chr5A 523449152 523451695 2543 False 1429.05 2772 95.6785 427 2613 2 chr5A.!!$F3 2186
5 TraesCS5B01G312300 chr5A 523136502 523137419 917 False 652.00 652 80.1300 809 1700 1 chr5A.!!$F2 891
6 TraesCS5B01G312300 chr5A 523148065 523148721 656 True 333.00 333 76.7270 1045 1678 1 chr5A.!!$R1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.039074 GACTATAGACGCGCTGCCAT 60.039 55.0 5.73 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2510 0.251341 GGTGTCCAGGCCACATCTTT 60.251 55.0 5.01 0.0 34.46 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.826337 AGATGCTCGCCTACATGGA 58.174 52.632 0.00 0.00 38.35 3.41
19 20 1.346062 AGATGCTCGCCTACATGGAT 58.654 50.000 0.00 0.00 38.35 3.41
20 21 1.001746 AGATGCTCGCCTACATGGATG 59.998 52.381 0.00 0.00 38.35 3.51
21 22 1.001293 GATGCTCGCCTACATGGATGA 59.999 52.381 0.00 0.00 38.35 2.92
22 23 0.390492 TGCTCGCCTACATGGATGAG 59.610 55.000 0.00 0.00 40.59 2.90
23 24 0.676184 GCTCGCCTACATGGATGAGA 59.324 55.000 0.00 0.00 40.27 3.27
24 25 1.274728 GCTCGCCTACATGGATGAGAT 59.725 52.381 0.00 0.00 40.27 2.75
25 26 2.673610 GCTCGCCTACATGGATGAGATC 60.674 54.545 0.00 0.00 40.27 2.75
26 27 1.541588 TCGCCTACATGGATGAGATCG 59.458 52.381 0.00 0.00 38.35 3.69
27 28 1.541588 CGCCTACATGGATGAGATCGA 59.458 52.381 0.00 0.00 38.35 3.59
28 29 2.415224 CGCCTACATGGATGAGATCGAG 60.415 54.545 0.00 0.00 38.35 4.04
29 30 2.560542 GCCTACATGGATGAGATCGAGT 59.439 50.000 0.00 0.00 38.35 4.18
30 31 3.759086 GCCTACATGGATGAGATCGAGTA 59.241 47.826 0.00 0.00 38.35 2.59
31 32 4.142491 GCCTACATGGATGAGATCGAGTAG 60.142 50.000 0.00 0.00 38.35 2.57
32 33 4.397730 CCTACATGGATGAGATCGAGTAGG 59.602 50.000 0.00 0.00 39.75 3.18
33 34 4.105754 ACATGGATGAGATCGAGTAGGA 57.894 45.455 0.00 0.00 0.00 2.94
34 35 4.078537 ACATGGATGAGATCGAGTAGGAG 58.921 47.826 0.00 0.00 0.00 3.69
35 36 3.147553 TGGATGAGATCGAGTAGGAGG 57.852 52.381 0.00 0.00 0.00 4.30
36 37 2.711547 TGGATGAGATCGAGTAGGAGGA 59.288 50.000 0.00 0.00 0.00 3.71
37 38 3.244735 TGGATGAGATCGAGTAGGAGGAG 60.245 52.174 0.00 0.00 0.00 3.69
38 39 2.940994 TGAGATCGAGTAGGAGGAGG 57.059 55.000 0.00 0.00 0.00 4.30
39 40 2.409570 TGAGATCGAGTAGGAGGAGGA 58.590 52.381 0.00 0.00 0.00 3.71
40 41 2.983192 TGAGATCGAGTAGGAGGAGGAT 59.017 50.000 0.00 0.00 0.00 3.24
41 42 3.244735 TGAGATCGAGTAGGAGGAGGATG 60.245 52.174 0.00 0.00 0.00 3.51
42 43 2.983192 AGATCGAGTAGGAGGAGGATGA 59.017 50.000 0.00 0.00 0.00 2.92
43 44 2.940994 TCGAGTAGGAGGAGGATGAG 57.059 55.000 0.00 0.00 0.00 2.90
44 45 1.202830 TCGAGTAGGAGGAGGATGAGC 60.203 57.143 0.00 0.00 0.00 4.26
45 46 1.202879 CGAGTAGGAGGAGGATGAGCT 60.203 57.143 0.00 0.00 0.00 4.09
46 47 2.238521 GAGTAGGAGGAGGATGAGCTG 58.761 57.143 0.00 0.00 0.00 4.24
47 48 1.133199 AGTAGGAGGAGGATGAGCTGG 60.133 57.143 0.00 0.00 0.00 4.85
48 49 1.133325 GTAGGAGGAGGATGAGCTGGA 60.133 57.143 0.00 0.00 0.00 3.86
49 50 0.105555 AGGAGGAGGATGAGCTGGAG 60.106 60.000 0.00 0.00 0.00 3.86
50 51 1.747774 GAGGAGGATGAGCTGGAGC 59.252 63.158 0.00 0.00 42.49 4.70
51 52 1.757423 GAGGAGGATGAGCTGGAGCC 61.757 65.000 0.00 0.00 43.38 4.70
52 53 2.817056 GGAGGATGAGCTGGAGCCC 61.817 68.421 0.00 0.00 43.38 5.19
53 54 1.765657 GAGGATGAGCTGGAGCCCT 60.766 63.158 0.00 0.00 43.38 5.19
54 55 1.757423 GAGGATGAGCTGGAGCCCTC 61.757 65.000 0.00 6.07 43.38 4.30
63 64 4.321966 GGAGCCCTCCTATGCGCC 62.322 72.222 4.18 0.00 46.16 6.53
64 65 4.321966 GAGCCCTCCTATGCGCCC 62.322 72.222 4.18 0.00 0.00 6.13
67 68 4.301027 CCCTCCTATGCGCCCGTC 62.301 72.222 4.18 0.00 0.00 4.79
68 69 4.301027 CCTCCTATGCGCCCGTCC 62.301 72.222 4.18 0.00 0.00 4.79
69 70 3.536917 CTCCTATGCGCCCGTCCA 61.537 66.667 4.18 0.00 0.00 4.02
70 71 3.792053 CTCCTATGCGCCCGTCCAC 62.792 68.421 4.18 0.00 0.00 4.02
71 72 4.910585 CCTATGCGCCCGTCCACC 62.911 72.222 4.18 0.00 0.00 4.61
72 73 4.910585 CTATGCGCCCGTCCACCC 62.911 72.222 4.18 0.00 0.00 4.61
80 81 4.838152 CCGTCCACCCGATGCCTG 62.838 72.222 0.00 0.00 0.00 4.85
81 82 4.838152 CGTCCACCCGATGCCTGG 62.838 72.222 0.00 0.00 0.00 4.45
89 90 3.274586 CGATGCCTGGCACGGATG 61.275 66.667 25.99 8.26 43.04 3.51
90 91 2.124570 GATGCCTGGCACGGATGT 60.125 61.111 25.99 6.74 43.04 3.06
91 92 2.124570 ATGCCTGGCACGGATGTC 60.125 61.111 25.99 0.00 43.04 3.06
92 93 4.758251 TGCCTGGCACGGATGTCG 62.758 66.667 19.30 0.00 45.88 4.35
105 106 4.408378 TGTCGTGGACATCTCCGA 57.592 55.556 0.00 0.00 39.88 4.55
106 107 4.787999 GTCGTGGACATCTCCGAC 57.212 61.111 0.00 0.00 42.22 4.79
107 108 1.226323 GTCGTGGACATCTCCGACG 60.226 63.158 5.91 5.91 40.04 5.12
108 109 1.376295 TCGTGGACATCTCCGACGA 60.376 57.895 9.43 9.43 42.64 4.20
109 110 1.226323 CGTGGACATCTCCGACGAC 60.226 63.158 0.00 0.00 40.59 4.34
110 111 1.226323 GTGGACATCTCCGACGACG 60.226 63.158 0.00 0.00 39.88 5.12
111 112 1.376295 TGGACATCTCCGACGACGA 60.376 57.895 9.28 0.00 39.88 4.20
112 113 0.956902 TGGACATCTCCGACGACGAA 60.957 55.000 9.28 0.00 39.88 3.85
113 114 0.248134 GGACATCTCCGACGACGAAG 60.248 60.000 9.28 0.00 42.66 3.79
114 115 0.725686 GACATCTCCGACGACGAAGA 59.274 55.000 9.28 3.16 37.29 2.87
115 116 1.331138 GACATCTCCGACGACGAAGAT 59.669 52.381 9.28 5.95 43.88 2.40
116 117 1.743958 ACATCTCCGACGACGAAGATT 59.256 47.619 6.26 0.00 40.46 2.40
117 118 2.941064 ACATCTCCGACGACGAAGATTA 59.059 45.455 6.26 0.00 40.46 1.75
118 119 3.002451 ACATCTCCGACGACGAAGATTAG 59.998 47.826 6.26 0.00 40.46 1.73
119 120 2.625737 TCTCCGACGACGAAGATTAGT 58.374 47.619 9.28 0.00 42.66 2.24
120 121 3.005554 TCTCCGACGACGAAGATTAGTT 58.994 45.455 9.28 0.00 42.66 2.24
121 122 4.183865 TCTCCGACGACGAAGATTAGTTA 58.816 43.478 9.28 0.00 42.66 2.24
122 123 4.269603 TCTCCGACGACGAAGATTAGTTAG 59.730 45.833 9.28 0.00 42.66 2.34
123 124 3.310774 TCCGACGACGAAGATTAGTTAGG 59.689 47.826 9.28 0.00 42.66 2.69
124 125 3.547613 CCGACGACGAAGATTAGTTAGGG 60.548 52.174 9.28 0.00 42.66 3.53
125 126 3.064545 CGACGACGAAGATTAGTTAGGGT 59.935 47.826 0.00 0.00 42.66 4.34
126 127 4.271049 CGACGACGAAGATTAGTTAGGGTA 59.729 45.833 0.00 0.00 42.66 3.69
127 128 5.557893 CGACGACGAAGATTAGTTAGGGTAG 60.558 48.000 0.00 0.00 42.66 3.18
128 129 5.189180 ACGACGAAGATTAGTTAGGGTAGT 58.811 41.667 0.00 0.00 0.00 2.73
129 130 6.349300 ACGACGAAGATTAGTTAGGGTAGTA 58.651 40.000 0.00 0.00 0.00 1.82
130 131 6.995091 ACGACGAAGATTAGTTAGGGTAGTAT 59.005 38.462 0.00 0.00 0.00 2.12
131 132 8.150945 ACGACGAAGATTAGTTAGGGTAGTATA 58.849 37.037 0.00 0.00 0.00 1.47
132 133 9.160496 CGACGAAGATTAGTTAGGGTAGTATAT 57.840 37.037 0.00 0.00 0.00 0.86
180 181 6.822667 TTGCATGCTTTGTATGGATATAGG 57.177 37.500 20.33 0.00 0.00 2.57
181 182 6.125589 TGCATGCTTTGTATGGATATAGGA 57.874 37.500 20.33 0.00 0.00 2.94
182 183 6.175471 TGCATGCTTTGTATGGATATAGGAG 58.825 40.000 20.33 0.00 0.00 3.69
183 184 6.176183 GCATGCTTTGTATGGATATAGGAGT 58.824 40.000 11.37 0.00 0.00 3.85
184 185 6.093219 GCATGCTTTGTATGGATATAGGAGTG 59.907 42.308 11.37 0.00 0.00 3.51
185 186 6.994421 TGCTTTGTATGGATATAGGAGTGA 57.006 37.500 0.00 0.00 0.00 3.41
186 187 7.373617 TGCTTTGTATGGATATAGGAGTGAA 57.626 36.000 0.00 0.00 0.00 3.18
187 188 7.801104 TGCTTTGTATGGATATAGGAGTGAAA 58.199 34.615 0.00 0.00 0.00 2.69
188 189 8.271458 TGCTTTGTATGGATATAGGAGTGAAAA 58.729 33.333 0.00 0.00 0.00 2.29
189 190 9.289782 GCTTTGTATGGATATAGGAGTGAAAAT 57.710 33.333 0.00 0.00 0.00 1.82
206 207 9.548208 GAGTGAAAATACTAAAGAGTGAAATGC 57.452 33.333 0.00 0.00 36.28 3.56
207 208 9.066892 AGTGAAAATACTAAAGAGTGAAATGCA 57.933 29.630 0.00 0.00 36.28 3.96
208 209 9.334693 GTGAAAATACTAAAGAGTGAAATGCAG 57.665 33.333 0.00 0.00 36.28 4.41
209 210 9.283768 TGAAAATACTAAAGAGTGAAATGCAGA 57.716 29.630 0.00 0.00 36.28 4.26
213 214 9.453572 AATACTAAAGAGTGAAATGCAGAATGA 57.546 29.630 0.00 0.00 35.27 2.57
214 215 7.138692 ACTAAAGAGTGAAATGCAGAATGAC 57.861 36.000 0.00 0.00 33.35 3.06
215 216 6.939163 ACTAAAGAGTGAAATGCAGAATGACT 59.061 34.615 0.00 0.00 33.35 3.41
216 217 8.097038 ACTAAAGAGTGAAATGCAGAATGACTA 58.903 33.333 0.00 0.00 33.35 2.59
217 218 7.750229 AAAGAGTGAAATGCAGAATGACTAA 57.250 32.000 0.00 0.00 39.69 2.24
218 219 7.934855 AAGAGTGAAATGCAGAATGACTAAT 57.065 32.000 0.00 0.00 39.69 1.73
219 220 7.934855 AGAGTGAAATGCAGAATGACTAATT 57.065 32.000 0.00 0.00 39.69 1.40
220 221 8.345724 AGAGTGAAATGCAGAATGACTAATTT 57.654 30.769 0.00 0.00 39.69 1.82
221 222 8.242053 AGAGTGAAATGCAGAATGACTAATTTG 58.758 33.333 0.00 0.00 39.69 2.32
222 223 8.114331 AGTGAAATGCAGAATGACTAATTTGA 57.886 30.769 0.00 0.00 39.69 2.69
223 224 8.242053 AGTGAAATGCAGAATGACTAATTTGAG 58.758 33.333 0.00 0.00 39.69 3.02
224 225 7.487189 GTGAAATGCAGAATGACTAATTTGAGG 59.513 37.037 0.00 0.00 39.69 3.86
225 226 4.970662 TGCAGAATGACTAATTTGAGGC 57.029 40.909 0.00 0.00 39.69 4.70
226 227 4.334552 TGCAGAATGACTAATTTGAGGCA 58.665 39.130 0.00 0.00 39.69 4.75
228 229 5.163591 TGCAGAATGACTAATTTGAGGCATG 60.164 40.000 0.00 0.00 44.86 4.06
229 230 5.066893 GCAGAATGACTAATTTGAGGCATGA 59.933 40.000 0.00 0.00 44.86 3.07
230 231 6.493116 CAGAATGACTAATTTGAGGCATGAC 58.507 40.000 0.00 0.00 44.86 3.06
231 232 5.591877 AGAATGACTAATTTGAGGCATGACC 59.408 40.000 0.00 0.00 44.86 4.02
232 233 3.270027 TGACTAATTTGAGGCATGACCG 58.730 45.455 0.00 0.00 46.52 4.79
233 234 2.614057 GACTAATTTGAGGCATGACCGG 59.386 50.000 0.00 0.00 46.52 5.28
234 235 2.026262 ACTAATTTGAGGCATGACCGGT 60.026 45.455 6.92 6.92 46.52 5.28
235 236 1.463674 AATTTGAGGCATGACCGGTC 58.536 50.000 28.17 28.17 46.52 4.79
236 237 0.327924 ATTTGAGGCATGACCGGTCA 59.672 50.000 37.79 37.79 46.52 4.02
237 238 0.605319 TTTGAGGCATGACCGGTCAC 60.605 55.000 38.46 26.04 46.52 3.67
238 239 1.480212 TTGAGGCATGACCGGTCACT 61.480 55.000 38.46 29.69 46.52 3.41
239 240 1.448540 GAGGCATGACCGGTCACTG 60.449 63.158 38.46 32.19 46.52 3.66
240 241 2.172483 GAGGCATGACCGGTCACTGT 62.172 60.000 38.46 21.38 46.52 3.55
241 242 1.741770 GGCATGACCGGTCACTGTC 60.742 63.158 38.46 30.53 43.11 3.51
242 243 1.741770 GCATGACCGGTCACTGTCC 60.742 63.158 38.46 20.24 43.11 4.02
243 244 1.446099 CATGACCGGTCACTGTCCG 60.446 63.158 38.46 18.47 43.11 4.79
244 245 3.296709 ATGACCGGTCACTGTCCGC 62.297 63.158 38.46 8.43 45.71 5.54
262 263 2.104331 GGACGTGTCCGATCGCAT 59.896 61.111 10.32 0.00 40.36 4.73
263 264 1.944676 GGACGTGTCCGATCGCATC 60.945 63.158 10.32 2.55 40.36 3.91
264 265 1.944676 GACGTGTCCGATCGCATCC 60.945 63.158 10.32 0.00 37.88 3.51
265 266 2.337749 GACGTGTCCGATCGCATCCT 62.338 60.000 10.32 0.00 37.88 3.24
266 267 1.946156 CGTGTCCGATCGCATCCTG 60.946 63.158 10.32 0.00 35.63 3.86
267 268 2.106938 TGTCCGATCGCATCCTGC 59.893 61.111 10.32 0.00 40.69 4.85
278 279 2.832672 GCATCCTGCGGACTTTTAAG 57.167 50.000 0.00 0.00 32.98 1.85
279 280 1.401905 GCATCCTGCGGACTTTTAAGG 59.598 52.381 0.00 0.00 32.98 2.69
280 281 2.017049 CATCCTGCGGACTTTTAAGGG 58.983 52.381 0.00 0.00 32.98 3.95
281 282 1.354101 TCCTGCGGACTTTTAAGGGA 58.646 50.000 0.00 0.00 0.00 4.20
282 283 1.913419 TCCTGCGGACTTTTAAGGGAT 59.087 47.619 0.00 0.00 0.00 3.85
283 284 2.307686 TCCTGCGGACTTTTAAGGGATT 59.692 45.455 0.00 0.00 0.00 3.01
284 285 2.423538 CCTGCGGACTTTTAAGGGATTG 59.576 50.000 0.00 0.00 0.00 2.67
285 286 3.343617 CTGCGGACTTTTAAGGGATTGA 58.656 45.455 0.00 0.00 0.00 2.57
286 287 3.756434 CTGCGGACTTTTAAGGGATTGAA 59.244 43.478 0.00 0.00 0.00 2.69
287 288 4.340617 TGCGGACTTTTAAGGGATTGAAT 58.659 39.130 0.00 0.00 0.00 2.57
288 289 4.770010 TGCGGACTTTTAAGGGATTGAATT 59.230 37.500 0.00 0.00 0.00 2.17
289 290 5.245075 TGCGGACTTTTAAGGGATTGAATTT 59.755 36.000 0.00 0.00 0.00 1.82
290 291 5.576774 GCGGACTTTTAAGGGATTGAATTTG 59.423 40.000 0.00 0.00 0.00 2.32
291 292 6.687604 CGGACTTTTAAGGGATTGAATTTGT 58.312 36.000 0.00 0.00 0.00 2.83
292 293 6.806739 CGGACTTTTAAGGGATTGAATTTGTC 59.193 38.462 0.00 0.00 0.00 3.18
293 294 7.523052 CGGACTTTTAAGGGATTGAATTTGTCA 60.523 37.037 0.00 0.00 0.00 3.58
308 309 8.420374 TGAATTTGTCAAATCCGACTATAGAC 57.580 34.615 11.19 0.00 36.82 2.59
309 310 7.222031 TGAATTTGTCAAATCCGACTATAGACG 59.778 37.037 16.19 16.19 36.82 4.18
310 311 3.961182 TGTCAAATCCGACTATAGACGC 58.039 45.455 17.45 4.57 36.82 5.19
311 312 2.971915 GTCAAATCCGACTATAGACGCG 59.028 50.000 17.45 3.53 32.92 6.01
312 313 1.714460 CAAATCCGACTATAGACGCGC 59.286 52.381 17.45 0.00 32.27 6.86
313 314 1.236628 AATCCGACTATAGACGCGCT 58.763 50.000 17.45 7.21 32.27 5.92
314 315 0.517755 ATCCGACTATAGACGCGCTG 59.482 55.000 17.45 1.02 32.27 5.18
315 316 1.726322 CCGACTATAGACGCGCTGC 60.726 63.158 17.45 0.00 32.27 5.25
316 317 1.726322 CGACTATAGACGCGCTGCC 60.726 63.158 5.73 0.00 0.00 4.85
317 318 1.359117 GACTATAGACGCGCTGCCA 59.641 57.895 5.73 0.00 0.00 4.92
318 319 0.039074 GACTATAGACGCGCTGCCAT 60.039 55.000 5.73 0.00 0.00 4.40
319 320 1.199327 GACTATAGACGCGCTGCCATA 59.801 52.381 5.73 0.00 0.00 2.74
320 321 1.068472 ACTATAGACGCGCTGCCATAC 60.068 52.381 5.73 0.00 0.00 2.39
321 322 1.200252 CTATAGACGCGCTGCCATACT 59.800 52.381 5.73 0.00 0.00 2.12
322 323 0.039074 ATAGACGCGCTGCCATACTC 60.039 55.000 5.73 0.00 0.00 2.59
342 343 1.471676 CCATACTCCAGTTCAGTCGGC 60.472 57.143 0.00 0.00 0.00 5.54
347 348 1.227823 CCAGTTCAGTCGGCCACAA 60.228 57.895 2.24 0.00 0.00 3.33
351 352 1.021968 GTTCAGTCGGCCACAAAAGT 58.978 50.000 2.24 0.00 0.00 2.66
352 353 1.404035 GTTCAGTCGGCCACAAAAGTT 59.596 47.619 2.24 0.00 0.00 2.66
355 356 1.164041 AGTCGGCCACAAAAGTTCCG 61.164 55.000 2.24 0.00 41.30 4.30
364 365 1.021202 CAAAAGTTCCGCTCCACACA 58.979 50.000 0.00 0.00 0.00 3.72
365 366 1.608590 CAAAAGTTCCGCTCCACACAT 59.391 47.619 0.00 0.00 0.00 3.21
367 368 0.108585 AAGTTCCGCTCCACACATGT 59.891 50.000 0.00 0.00 0.00 3.21
378 379 3.566261 CACATGTGTGGAGGCGAC 58.434 61.111 18.03 0.00 42.10 5.19
386 387 1.142748 GTGGAGGCGACTGATGAGG 59.857 63.158 0.00 0.00 44.43 3.86
391 392 1.069204 GAGGCGACTGATGAGGCAATA 59.931 52.381 0.00 0.00 44.43 1.90
405 406 4.229876 GAGGCAATAAAAACACTGAGTGC 58.770 43.478 13.37 0.00 36.98 4.40
414 415 0.940126 ACACTGAGTGCTCTTTTGCG 59.060 50.000 13.37 0.00 36.98 4.85
473 476 5.393962 GCTTGTGATTGCAAAAGTAGGTAG 58.606 41.667 1.71 0.00 40.75 3.18
478 481 5.938125 GTGATTGCAAAAGTAGGTAGGAGAA 59.062 40.000 1.71 0.00 0.00 2.87
482 485 5.937111 TGCAAAAGTAGGTAGGAGAAAGTT 58.063 37.500 0.00 0.00 0.00 2.66
486 489 6.496144 AAAGTAGGTAGGAGAAAGTTGTGT 57.504 37.500 0.00 0.00 0.00 3.72
492 495 1.564348 AGGAGAAAGTTGTGTGGTGGT 59.436 47.619 0.00 0.00 0.00 4.16
526 529 7.391148 ACAGTAACATTCTTTTCTGTGTGTT 57.609 32.000 0.00 0.00 35.32 3.32
527 530 8.500753 ACAGTAACATTCTTTTCTGTGTGTTA 57.499 30.769 0.00 0.00 35.32 2.41
528 531 8.952278 ACAGTAACATTCTTTTCTGTGTGTTAA 58.048 29.630 0.00 0.00 34.86 2.01
546 570 8.706035 GTGTGTTAAAAATACTGTACACGAGAT 58.294 33.333 0.00 0.00 38.88 2.75
547 571 9.263538 TGTGTTAAAAATACTGTACACGAGATT 57.736 29.630 0.00 0.00 38.88 2.40
584 608 3.627395 TCAGAGGATTTGTAATGGCGT 57.373 42.857 0.00 0.00 0.00 5.68
589 613 3.426615 AGGATTTGTAATGGCGTCCAAA 58.573 40.909 2.68 6.88 36.95 3.28
663 1020 2.359230 AACTTCAGCTGCGCTCCC 60.359 61.111 9.47 0.00 36.40 4.30
676 1033 0.824109 CGCTCCCTGTCCAATGTCTA 59.176 55.000 0.00 0.00 0.00 2.59
679 1036 2.171448 GCTCCCTGTCCAATGTCTATGT 59.829 50.000 0.00 0.00 0.00 2.29
698 1055 0.391661 TAGCTTTCTTGCCTCCGCTG 60.392 55.000 0.00 0.00 35.36 5.18
773 1130 1.141657 GCTAGTGGAGCCCAATCATCA 59.858 52.381 0.00 0.00 46.41 3.07
781 1138 1.572415 AGCCCAATCATCACCCTTGAT 59.428 47.619 0.00 0.00 43.80 2.57
782 1139 2.023695 AGCCCAATCATCACCCTTGATT 60.024 45.455 0.00 0.00 40.79 2.57
910 1295 6.071560 ACTCCACGAGACACTAAATCATAACA 60.072 38.462 0.00 0.00 33.32 2.41
911 1296 6.097356 TCCACGAGACACTAAATCATAACAC 58.903 40.000 0.00 0.00 0.00 3.32
912 1297 6.071560 TCCACGAGACACTAAATCATAACACT 60.072 38.462 0.00 0.00 0.00 3.55
948 1339 1.411977 CCTGCTCTCACACTCCATAGG 59.588 57.143 0.00 0.00 0.00 2.57
1053 1451 2.427245 CCCTTCCTCGCCATCGTCT 61.427 63.158 0.00 0.00 36.96 4.18
1054 1452 1.227089 CCTTCCTCGCCATCGTCTG 60.227 63.158 0.00 0.00 36.96 3.51
1566 2006 1.040646 TGTTCGAGCTGGACTTGTCT 58.959 50.000 0.00 0.00 0.00 3.41
1847 2289 3.762288 ACATGCAATCAGATGCTGTTCTT 59.238 39.130 0.00 0.00 46.54 2.52
1866 2308 7.587629 TGTTCTTAAGCATCAGAAATGACAAG 58.412 34.615 0.00 0.00 30.76 3.16
1867 2309 6.748333 TCTTAAGCATCAGAAATGACAAGG 57.252 37.500 0.00 0.00 0.00 3.61
1873 2315 5.047519 AGCATCAGAAATGACAAGGAAAAGG 60.048 40.000 0.00 0.00 0.00 3.11
1874 2316 5.047802 GCATCAGAAATGACAAGGAAAAGGA 60.048 40.000 0.00 0.00 0.00 3.36
1875 2317 6.385033 CATCAGAAATGACAAGGAAAAGGAC 58.615 40.000 0.00 0.00 0.00 3.85
1876 2318 5.445069 TCAGAAATGACAAGGAAAAGGACA 58.555 37.500 0.00 0.00 0.00 4.02
1877 2319 5.299279 TCAGAAATGACAAGGAAAAGGACAC 59.701 40.000 0.00 0.00 0.00 3.67
1878 2320 4.275936 AGAAATGACAAGGAAAAGGACACG 59.724 41.667 0.00 0.00 0.00 4.49
1879 2321 2.702592 TGACAAGGAAAAGGACACGT 57.297 45.000 0.00 0.00 0.00 4.49
1881 2323 2.093394 TGACAAGGAAAAGGACACGTGA 60.093 45.455 25.01 0.00 0.00 4.35
1882 2324 2.940410 GACAAGGAAAAGGACACGTGAA 59.060 45.455 25.01 0.00 0.00 3.18
1883 2325 3.349022 ACAAGGAAAAGGACACGTGAAA 58.651 40.909 25.01 0.00 0.00 2.69
1884 2326 3.377172 ACAAGGAAAAGGACACGTGAAAG 59.623 43.478 25.01 0.00 0.00 2.62
1962 2408 5.021458 ACAAGATTCGAAAGGAGGGTACTA 58.979 41.667 0.00 0.00 0.00 1.82
1975 2422 5.482175 AGGAGGGTACTATATCACTTCATGC 59.518 44.000 0.00 0.00 0.00 4.06
2039 2486 2.100584 ACGCTTGCTAATCAGAGAGAGG 59.899 50.000 0.00 0.00 0.00 3.69
2040 2487 2.100584 CGCTTGCTAATCAGAGAGAGGT 59.899 50.000 0.00 0.00 0.00 3.85
2042 2489 3.740764 GCTTGCTAATCAGAGAGAGGTGG 60.741 52.174 0.00 0.00 0.00 4.61
2043 2490 1.759445 TGCTAATCAGAGAGAGGTGGC 59.241 52.381 0.00 0.00 0.00 5.01
2061 2510 2.290387 TGGCCCAAGTACGCTAATTCAA 60.290 45.455 0.00 0.00 0.00 2.69
2247 2696 1.815613 GCGAGATGCCTAGAGCTGATA 59.184 52.381 0.00 0.00 44.23 2.15
2248 2697 2.159393 GCGAGATGCCTAGAGCTGATAG 60.159 54.545 0.00 0.00 44.23 2.08
2249 2698 3.081061 CGAGATGCCTAGAGCTGATAGT 58.919 50.000 0.00 0.00 44.23 2.12
2250 2699 4.257731 CGAGATGCCTAGAGCTGATAGTA 58.742 47.826 0.00 0.00 44.23 1.82
2257 2712 5.163077 TGCCTAGAGCTGATAGTACTACCTT 60.163 44.000 4.31 0.00 44.23 3.50
2280 2735 8.811378 CCTTTTTCTTTCTTTTGAAGATGACAC 58.189 33.333 0.00 0.00 39.88 3.67
2334 2789 5.048921 GTGACTGTGCAAGTGACTAGTACTA 60.049 44.000 1.89 1.89 39.68 1.82
2335 2790 5.048921 TGACTGTGCAAGTGACTAGTACTAC 60.049 44.000 0.00 0.00 40.07 2.73
2336 2791 5.071370 ACTGTGCAAGTGACTAGTACTACT 58.929 41.667 0.00 0.00 37.88 2.57
2349 2804 7.336176 TGACTAGTACTACTTGATAGTGTGGTG 59.664 40.741 0.00 0.00 44.30 4.17
2370 2825 5.402997 TGCAATAATTGTGCAGAATTGGA 57.597 34.783 27.07 13.87 46.76 3.53
2392 2847 2.797786 TGGGTGTATAGGGTGCAAAAC 58.202 47.619 0.00 0.00 0.00 2.43
2430 2885 4.878971 TGAACAGTCGAAATCCTGTGAAAA 59.121 37.500 7.12 0.00 40.91 2.29
2431 2886 4.813296 ACAGTCGAAATCCTGTGAAAAC 57.187 40.909 5.68 0.00 40.30 2.43
2432 2887 4.451900 ACAGTCGAAATCCTGTGAAAACT 58.548 39.130 5.68 0.00 40.30 2.66
2433 2888 5.607477 ACAGTCGAAATCCTGTGAAAACTA 58.393 37.500 5.68 0.00 40.30 2.24
2435 2890 6.710744 ACAGTCGAAATCCTGTGAAAACTATT 59.289 34.615 5.68 0.00 40.30 1.73
2439 2896 7.955864 GTCGAAATCCTGTGAAAACTATTGTAC 59.044 37.037 0.00 0.00 0.00 2.90
2523 2980 5.582550 TGTATAGCTTGAATCGTCTCAGTG 58.417 41.667 0.00 0.00 0.00 3.66
2524 2981 1.719600 AGCTTGAATCGTCTCAGTGC 58.280 50.000 0.00 7.75 0.00 4.40
2525 2982 0.368227 GCTTGAATCGTCTCAGTGCG 59.632 55.000 0.00 0.00 0.00 5.34
2526 2983 1.702886 CTTGAATCGTCTCAGTGCGT 58.297 50.000 0.00 0.00 0.00 5.24
2528 2985 3.439293 CTTGAATCGTCTCAGTGCGTAT 58.561 45.455 0.00 0.00 0.00 3.06
2529 2986 4.598062 CTTGAATCGTCTCAGTGCGTATA 58.402 43.478 0.00 0.00 0.00 1.47
2530 2987 4.830826 TGAATCGTCTCAGTGCGTATAT 57.169 40.909 0.00 0.00 0.00 0.86
2531 2988 5.934935 TGAATCGTCTCAGTGCGTATATA 57.065 39.130 0.00 0.00 0.00 0.86
2532 2989 6.496338 TGAATCGTCTCAGTGCGTATATAT 57.504 37.500 0.00 0.00 0.00 0.86
2535 2992 8.508875 TGAATCGTCTCAGTGCGTATATATTTA 58.491 33.333 0.00 0.00 0.00 1.40
2544 3003 9.016438 TCAGTGCGTATATATTTATACTGTCCA 57.984 33.333 10.43 2.28 38.59 4.02
2560 3019 2.339556 CCATTCCTCCCGCGCAAAA 61.340 57.895 8.75 0.00 0.00 2.44
2562 3021 0.456653 CATTCCTCCCGCGCAAAAAG 60.457 55.000 8.75 0.00 0.00 2.27
2567 3026 0.031449 CTCCCGCGCAAAAAGGAAAA 59.969 50.000 8.75 0.00 0.00 2.29
2608 3067 4.722279 CCTTCCCTCAGTATTACTCCCTTT 59.278 45.833 0.00 0.00 0.00 3.11
2613 3072 5.604650 CCCTCAGTATTACTCCCTTTGATCT 59.395 44.000 0.00 0.00 0.00 2.75
2614 3073 6.463614 CCCTCAGTATTACTCCCTTTGATCTG 60.464 46.154 0.00 0.00 0.00 2.90
2615 3074 6.098982 CCTCAGTATTACTCCCTTTGATCTGT 59.901 42.308 0.00 0.00 0.00 3.41
2616 3075 7.287927 CCTCAGTATTACTCCCTTTGATCTGTA 59.712 40.741 0.00 0.00 0.00 2.74
2617 3076 8.783660 TCAGTATTACTCCCTTTGATCTGTAT 57.216 34.615 0.00 0.00 0.00 2.29
2618 3077 9.213777 TCAGTATTACTCCCTTTGATCTGTATT 57.786 33.333 0.00 0.00 0.00 1.89
2626 3085 8.361139 ACTCCCTTTGATCTGTATTACTTATCG 58.639 37.037 0.00 0.00 0.00 2.92
2627 3086 7.152645 TCCCTTTGATCTGTATTACTTATCGC 58.847 38.462 0.00 0.00 0.00 4.58
2628 3087 7.015292 TCCCTTTGATCTGTATTACTTATCGCT 59.985 37.037 0.00 0.00 0.00 4.93
2629 3088 7.116948 CCCTTTGATCTGTATTACTTATCGCTG 59.883 40.741 0.00 0.00 0.00 5.18
2630 3089 7.867909 CCTTTGATCTGTATTACTTATCGCTGA 59.132 37.037 0.00 0.00 0.00 4.26
2631 3090 9.249457 CTTTGATCTGTATTACTTATCGCTGAA 57.751 33.333 0.00 0.00 0.00 3.02
2632 3091 9.594478 TTTGATCTGTATTACTTATCGCTGAAA 57.406 29.630 0.00 0.00 0.00 2.69
2633 3092 9.764363 TTGATCTGTATTACTTATCGCTGAAAT 57.236 29.630 0.00 0.00 0.00 2.17
2634 3093 9.196552 TGATCTGTATTACTTATCGCTGAAATG 57.803 33.333 0.00 0.00 0.00 2.32
2635 3094 7.946655 TCTGTATTACTTATCGCTGAAATGG 57.053 36.000 0.00 0.00 0.00 3.16
2636 3095 7.722363 TCTGTATTACTTATCGCTGAAATGGA 58.278 34.615 0.00 0.00 0.00 3.41
2637 3096 8.367911 TCTGTATTACTTATCGCTGAAATGGAT 58.632 33.333 0.00 0.00 0.00 3.41
2638 3097 8.310406 TGTATTACTTATCGCTGAAATGGATG 57.690 34.615 0.00 0.00 0.00 3.51
2639 3098 7.931407 TGTATTACTTATCGCTGAAATGGATGT 59.069 33.333 0.00 0.00 0.00 3.06
2640 3099 9.419297 GTATTACTTATCGCTGAAATGGATGTA 57.581 33.333 0.00 0.00 0.00 2.29
2642 3101 8.534333 TTACTTATCGCTGAAATGGATGTATC 57.466 34.615 0.00 0.00 0.00 2.24
2643 3102 6.763355 ACTTATCGCTGAAATGGATGTATCT 58.237 36.000 0.00 0.00 0.00 1.98
2644 3103 7.896811 ACTTATCGCTGAAATGGATGTATCTA 58.103 34.615 0.00 0.00 0.00 1.98
2645 3104 8.367911 ACTTATCGCTGAAATGGATGTATCTAA 58.632 33.333 0.00 0.00 0.00 2.10
2646 3105 9.208022 CTTATCGCTGAAATGGATGTATCTAAA 57.792 33.333 0.00 0.00 0.00 1.85
2647 3106 9.725019 TTATCGCTGAAATGGATGTATCTAAAT 57.275 29.630 0.00 0.00 0.00 1.40
2648 3107 7.425577 TCGCTGAAATGGATGTATCTAAATG 57.574 36.000 0.00 0.00 0.00 2.32
2649 3108 6.992123 TCGCTGAAATGGATGTATCTAAATGT 59.008 34.615 0.00 0.00 0.00 2.71
2650 3109 8.147704 TCGCTGAAATGGATGTATCTAAATGTA 58.852 33.333 0.00 0.00 0.00 2.29
2651 3110 8.939929 CGCTGAAATGGATGTATCTAAATGTAT 58.060 33.333 0.00 0.00 0.00 2.29
2659 3118 9.056005 TGGATGTATCTAAATGTATTTCAGTGC 57.944 33.333 0.00 0.00 0.00 4.40
2660 3119 9.277783 GGATGTATCTAAATGTATTTCAGTGCT 57.722 33.333 0.00 0.00 0.00 4.40
2672 3131 8.978874 TGTATTTCAGTGCTAAATACATCCAT 57.021 30.769 18.97 0.00 46.83 3.41
2673 3132 9.407380 TGTATTTCAGTGCTAAATACATCCATT 57.593 29.630 18.97 0.00 46.83 3.16
2678 3137 7.930217 TCAGTGCTAAATACATCCATTTAAGC 58.070 34.615 0.00 0.00 31.67 3.09
2679 3138 7.555914 TCAGTGCTAAATACATCCATTTAAGCA 59.444 33.333 0.00 0.00 35.09 3.91
2680 3139 8.190122 CAGTGCTAAATACATCCATTTAAGCAA 58.810 33.333 0.00 0.00 36.89 3.91
2681 3140 8.190784 AGTGCTAAATACATCCATTTAAGCAAC 58.809 33.333 0.00 0.00 36.89 4.17
2682 3141 7.973388 GTGCTAAATACATCCATTTAAGCAACA 59.027 33.333 0.00 0.00 36.89 3.33
2683 3142 8.526978 TGCTAAATACATCCATTTAAGCAACAA 58.473 29.630 0.00 0.00 34.85 2.83
2684 3143 9.023967 GCTAAATACATCCATTTAAGCAACAAG 57.976 33.333 0.00 0.00 31.67 3.16
2692 3151 8.971321 CATCCATTTAAGCAACAAGTAATATGC 58.029 33.333 0.00 0.00 39.06 3.14
2693 3152 8.060931 TCCATTTAAGCAACAAGTAATATGCA 57.939 30.769 0.00 0.00 41.18 3.96
2694 3153 8.694540 TCCATTTAAGCAACAAGTAATATGCAT 58.305 29.630 3.79 3.79 41.18 3.96
2695 3154 8.971321 CCATTTAAGCAACAAGTAATATGCATC 58.029 33.333 0.19 0.00 41.18 3.91
2696 3155 9.740239 CATTTAAGCAACAAGTAATATGCATCT 57.260 29.630 0.19 0.00 41.18 2.90
2697 3156 9.740239 ATTTAAGCAACAAGTAATATGCATCTG 57.260 29.630 0.19 0.00 41.18 2.90
2698 3157 8.504812 TTAAGCAACAAGTAATATGCATCTGA 57.495 30.769 0.19 0.00 41.18 3.27
2699 3158 7.578310 AAGCAACAAGTAATATGCATCTGAT 57.422 32.000 0.19 0.00 41.18 2.90
2700 3159 7.578310 AGCAACAAGTAATATGCATCTGATT 57.422 32.000 0.19 0.00 41.18 2.57
2701 3160 7.423199 AGCAACAAGTAATATGCATCTGATTG 58.577 34.615 0.19 6.26 41.18 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.001746 CATCCATGTAGGCGAGCATCT 59.998 52.381 0.00 0.00 37.29 2.90
1 2 1.001293 TCATCCATGTAGGCGAGCATC 59.999 52.381 0.00 0.00 37.29 3.91
2 3 1.001746 CTCATCCATGTAGGCGAGCAT 59.998 52.381 0.00 0.00 37.29 3.79
3 4 0.390492 CTCATCCATGTAGGCGAGCA 59.610 55.000 0.00 0.00 37.29 4.26
4 5 0.676184 TCTCATCCATGTAGGCGAGC 59.324 55.000 0.00 0.00 36.87 5.03
5 6 2.415224 CGATCTCATCCATGTAGGCGAG 60.415 54.545 0.00 0.00 37.75 5.03
6 7 1.541588 CGATCTCATCCATGTAGGCGA 59.458 52.381 0.00 0.00 37.29 5.54
7 8 1.541588 TCGATCTCATCCATGTAGGCG 59.458 52.381 0.00 0.00 37.29 5.52
8 9 2.560542 ACTCGATCTCATCCATGTAGGC 59.439 50.000 0.00 0.00 37.29 3.93
9 10 4.397730 CCTACTCGATCTCATCCATGTAGG 59.602 50.000 5.98 5.98 37.03 3.18
10 11 5.249420 TCCTACTCGATCTCATCCATGTAG 58.751 45.833 0.00 0.00 0.00 2.74
11 12 5.242795 TCCTACTCGATCTCATCCATGTA 57.757 43.478 0.00 0.00 0.00 2.29
12 13 4.078537 CTCCTACTCGATCTCATCCATGT 58.921 47.826 0.00 0.00 0.00 3.21
13 14 3.443329 CCTCCTACTCGATCTCATCCATG 59.557 52.174 0.00 0.00 0.00 3.66
14 15 3.332187 TCCTCCTACTCGATCTCATCCAT 59.668 47.826 0.00 0.00 0.00 3.41
15 16 2.711547 TCCTCCTACTCGATCTCATCCA 59.288 50.000 0.00 0.00 0.00 3.41
16 17 3.343617 CTCCTCCTACTCGATCTCATCC 58.656 54.545 0.00 0.00 0.00 3.51
17 18 3.008594 TCCTCCTCCTACTCGATCTCATC 59.991 52.174 0.00 0.00 0.00 2.92
18 19 2.983192 TCCTCCTCCTACTCGATCTCAT 59.017 50.000 0.00 0.00 0.00 2.90
19 20 2.409570 TCCTCCTCCTACTCGATCTCA 58.590 52.381 0.00 0.00 0.00 3.27
20 21 3.008594 TCATCCTCCTCCTACTCGATCTC 59.991 52.174 0.00 0.00 0.00 2.75
21 22 2.983192 TCATCCTCCTCCTACTCGATCT 59.017 50.000 0.00 0.00 0.00 2.75
22 23 3.343617 CTCATCCTCCTCCTACTCGATC 58.656 54.545 0.00 0.00 0.00 3.69
23 24 2.554344 GCTCATCCTCCTCCTACTCGAT 60.554 54.545 0.00 0.00 0.00 3.59
24 25 1.202830 GCTCATCCTCCTCCTACTCGA 60.203 57.143 0.00 0.00 0.00 4.04
25 26 1.202879 AGCTCATCCTCCTCCTACTCG 60.203 57.143 0.00 0.00 0.00 4.18
26 27 2.238521 CAGCTCATCCTCCTCCTACTC 58.761 57.143 0.00 0.00 0.00 2.59
27 28 1.133199 CCAGCTCATCCTCCTCCTACT 60.133 57.143 0.00 0.00 0.00 2.57
28 29 1.133325 TCCAGCTCATCCTCCTCCTAC 60.133 57.143 0.00 0.00 0.00 3.18
29 30 1.146774 CTCCAGCTCATCCTCCTCCTA 59.853 57.143 0.00 0.00 0.00 2.94
30 31 0.105555 CTCCAGCTCATCCTCCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
31 32 1.757423 GCTCCAGCTCATCCTCCTCC 61.757 65.000 0.00 0.00 38.21 4.30
32 33 1.747774 GCTCCAGCTCATCCTCCTC 59.252 63.158 0.00 0.00 38.21 3.71
33 34 1.765657 GGCTCCAGCTCATCCTCCT 60.766 63.158 0.00 0.00 41.70 3.69
34 35 2.817056 GGGCTCCAGCTCATCCTCC 61.817 68.421 0.00 0.00 42.27 4.30
35 36 1.757423 GAGGGCTCCAGCTCATCCTC 61.757 65.000 0.23 3.71 46.01 3.71
36 37 1.765657 GAGGGCTCCAGCTCATCCT 60.766 63.158 0.23 0.00 46.01 3.24
37 38 2.828145 GAGGGCTCCAGCTCATCC 59.172 66.667 0.23 0.00 46.01 3.51
47 48 4.321966 GGGCGCATAGGAGGGCTC 62.322 72.222 10.83 0.00 45.65 4.70
50 51 4.301027 GACGGGCGCATAGGAGGG 62.301 72.222 10.83 0.00 0.00 4.30
51 52 4.301027 GGACGGGCGCATAGGAGG 62.301 72.222 10.83 0.00 0.00 4.30
52 53 3.536917 TGGACGGGCGCATAGGAG 61.537 66.667 10.83 0.00 0.00 3.69
53 54 3.845259 GTGGACGGGCGCATAGGA 61.845 66.667 10.83 0.00 0.00 2.94
54 55 4.910585 GGTGGACGGGCGCATAGG 62.911 72.222 10.83 0.00 0.00 2.57
55 56 4.910585 GGGTGGACGGGCGCATAG 62.911 72.222 10.83 1.38 0.00 2.23
63 64 4.838152 CAGGCATCGGGTGGACGG 62.838 72.222 0.00 0.00 0.00 4.79
64 65 4.838152 CCAGGCATCGGGTGGACG 62.838 72.222 0.00 0.00 32.60 4.79
71 72 4.552365 ATCCGTGCCAGGCATCGG 62.552 66.667 33.05 33.05 46.29 4.18
72 73 3.274586 CATCCGTGCCAGGCATCG 61.275 66.667 19.75 21.43 41.91 3.84
73 74 2.124570 ACATCCGTGCCAGGCATC 60.125 61.111 19.75 10.62 41.91 3.91
74 75 2.124570 GACATCCGTGCCAGGCAT 60.125 61.111 19.75 0.00 41.91 4.40
75 76 4.758251 CGACATCCGTGCCAGGCA 62.758 66.667 11.22 11.22 35.60 4.75
88 89 4.408378 TCGGAGATGTCCACGACA 57.592 55.556 9.94 0.00 46.90 4.35
89 90 1.642037 TCGTCGGAGATGTCCACGAC 61.642 60.000 23.14 17.28 44.42 4.34
90 91 1.376295 TCGTCGGAGATGTCCACGA 60.376 57.895 23.14 23.14 45.75 4.35
91 92 1.226323 GTCGTCGGAGATGTCCACG 60.226 63.158 20.37 20.37 44.18 4.94
92 93 1.226323 CGTCGTCGGAGATGTCCAC 60.226 63.158 9.94 5.66 44.18 4.02
93 94 0.956902 TTCGTCGTCGGAGATGTCCA 60.957 55.000 9.94 0.00 44.18 4.02
94 95 0.248134 CTTCGTCGTCGGAGATGTCC 60.248 60.000 4.17 0.00 44.73 4.02
95 96 0.725686 TCTTCGTCGTCGGAGATGTC 59.274 55.000 9.06 0.00 45.42 3.06
96 97 2.850439 TCTTCGTCGTCGGAGATGT 58.150 52.632 9.06 0.00 45.42 3.06
100 101 3.402058 AACTAATCTTCGTCGTCGGAG 57.598 47.619 3.79 3.79 43.44 4.63
101 102 3.310774 CCTAACTAATCTTCGTCGTCGGA 59.689 47.826 1.55 0.00 37.69 4.55
102 103 3.547613 CCCTAACTAATCTTCGTCGTCGG 60.548 52.174 1.55 0.00 37.69 4.79
103 104 3.064545 ACCCTAACTAATCTTCGTCGTCG 59.935 47.826 0.00 0.00 38.55 5.12
104 105 4.629251 ACCCTAACTAATCTTCGTCGTC 57.371 45.455 0.00 0.00 0.00 4.20
105 106 5.189180 ACTACCCTAACTAATCTTCGTCGT 58.811 41.667 0.00 0.00 0.00 4.34
106 107 5.747951 ACTACCCTAACTAATCTTCGTCG 57.252 43.478 0.00 0.00 0.00 5.12
154 155 8.143193 CCTATATCCATACAAAGCATGCAAAAA 58.857 33.333 21.98 1.00 0.00 1.94
155 156 7.505248 TCCTATATCCATACAAAGCATGCAAAA 59.495 33.333 21.98 0.20 0.00 2.44
156 157 7.003482 TCCTATATCCATACAAAGCATGCAAA 58.997 34.615 21.98 0.00 0.00 3.68
157 158 6.541907 TCCTATATCCATACAAAGCATGCAA 58.458 36.000 21.98 0.00 0.00 4.08
158 159 6.125589 TCCTATATCCATACAAAGCATGCA 57.874 37.500 21.98 0.00 0.00 3.96
159 160 6.093219 CACTCCTATATCCATACAAAGCATGC 59.907 42.308 10.51 10.51 0.00 4.06
160 161 7.389232 TCACTCCTATATCCATACAAAGCATG 58.611 38.462 0.00 0.00 0.00 4.06
161 162 7.559335 TCACTCCTATATCCATACAAAGCAT 57.441 36.000 0.00 0.00 0.00 3.79
162 163 6.994421 TCACTCCTATATCCATACAAAGCA 57.006 37.500 0.00 0.00 0.00 3.91
163 164 8.677148 TTTTCACTCCTATATCCATACAAAGC 57.323 34.615 0.00 0.00 0.00 3.51
180 181 9.548208 GCATTTCACTCTTTAGTATTTTCACTC 57.452 33.333 0.00 0.00 33.48 3.51
181 182 9.066892 TGCATTTCACTCTTTAGTATTTTCACT 57.933 29.630 0.00 0.00 33.48 3.41
182 183 9.334693 CTGCATTTCACTCTTTAGTATTTTCAC 57.665 33.333 0.00 0.00 33.48 3.18
183 184 9.283768 TCTGCATTTCACTCTTTAGTATTTTCA 57.716 29.630 0.00 0.00 33.48 2.69
187 188 9.453572 TCATTCTGCATTTCACTCTTTAGTATT 57.546 29.630 0.00 0.00 33.48 1.89
188 189 8.887717 GTCATTCTGCATTTCACTCTTTAGTAT 58.112 33.333 0.00 0.00 33.48 2.12
189 190 8.097038 AGTCATTCTGCATTTCACTCTTTAGTA 58.903 33.333 0.00 0.00 33.48 1.82
190 191 6.939163 AGTCATTCTGCATTTCACTCTTTAGT 59.061 34.615 0.00 0.00 35.91 2.24
191 192 7.375106 AGTCATTCTGCATTTCACTCTTTAG 57.625 36.000 0.00 0.00 0.00 1.85
192 193 8.846943 TTAGTCATTCTGCATTTCACTCTTTA 57.153 30.769 0.00 0.00 0.00 1.85
193 194 7.750229 TTAGTCATTCTGCATTTCACTCTTT 57.250 32.000 0.00 0.00 0.00 2.52
194 195 7.934855 ATTAGTCATTCTGCATTTCACTCTT 57.065 32.000 0.00 0.00 0.00 2.85
195 196 7.934855 AATTAGTCATTCTGCATTTCACTCT 57.065 32.000 0.00 0.00 0.00 3.24
196 197 8.239314 TCAAATTAGTCATTCTGCATTTCACTC 58.761 33.333 0.00 0.00 0.00 3.51
197 198 8.114331 TCAAATTAGTCATTCTGCATTTCACT 57.886 30.769 0.00 0.00 0.00 3.41
198 199 7.487189 CCTCAAATTAGTCATTCTGCATTTCAC 59.513 37.037 0.00 0.00 0.00 3.18
199 200 7.541162 CCTCAAATTAGTCATTCTGCATTTCA 58.459 34.615 0.00 0.00 0.00 2.69
200 201 6.474751 GCCTCAAATTAGTCATTCTGCATTTC 59.525 38.462 0.00 0.00 0.00 2.17
201 202 6.071221 TGCCTCAAATTAGTCATTCTGCATTT 60.071 34.615 0.00 0.00 0.00 2.32
202 203 5.419788 TGCCTCAAATTAGTCATTCTGCATT 59.580 36.000 0.00 0.00 0.00 3.56
203 204 4.951715 TGCCTCAAATTAGTCATTCTGCAT 59.048 37.500 0.00 0.00 0.00 3.96
204 205 4.334552 TGCCTCAAATTAGTCATTCTGCA 58.665 39.130 0.00 0.00 0.00 4.41
205 206 4.970662 TGCCTCAAATTAGTCATTCTGC 57.029 40.909 0.00 0.00 0.00 4.26
206 207 6.459298 GGTCATGCCTCAAATTAGTCATTCTG 60.459 42.308 0.00 0.00 0.00 3.02
207 208 5.591877 GGTCATGCCTCAAATTAGTCATTCT 59.408 40.000 0.00 0.00 0.00 2.40
208 209 5.504665 CGGTCATGCCTCAAATTAGTCATTC 60.505 44.000 4.92 0.00 34.25 2.67
209 210 4.336433 CGGTCATGCCTCAAATTAGTCATT 59.664 41.667 4.92 0.00 34.25 2.57
210 211 3.879295 CGGTCATGCCTCAAATTAGTCAT 59.121 43.478 4.92 0.00 34.25 3.06
211 212 3.270027 CGGTCATGCCTCAAATTAGTCA 58.730 45.455 4.92 0.00 34.25 3.41
212 213 2.614057 CCGGTCATGCCTCAAATTAGTC 59.386 50.000 0.00 0.00 34.25 2.59
213 214 2.026262 ACCGGTCATGCCTCAAATTAGT 60.026 45.455 0.00 0.00 34.25 2.24
214 215 2.614057 GACCGGTCATGCCTCAAATTAG 59.386 50.000 29.75 0.00 34.25 1.73
215 216 2.026729 TGACCGGTCATGCCTCAAATTA 60.027 45.455 33.23 5.69 34.14 1.40
216 217 1.271871 TGACCGGTCATGCCTCAAATT 60.272 47.619 33.23 0.00 34.14 1.82
217 218 0.327924 TGACCGGTCATGCCTCAAAT 59.672 50.000 33.23 0.00 34.14 2.32
218 219 0.605319 GTGACCGGTCATGCCTCAAA 60.605 55.000 38.11 11.11 42.18 2.69
219 220 1.003839 GTGACCGGTCATGCCTCAA 60.004 57.895 38.11 11.91 42.18 3.02
220 221 1.913262 AGTGACCGGTCATGCCTCA 60.913 57.895 38.11 13.41 42.18 3.86
221 222 1.448540 CAGTGACCGGTCATGCCTC 60.449 63.158 38.11 24.94 42.18 4.70
222 223 2.172483 GACAGTGACCGGTCATGCCT 62.172 60.000 38.11 27.43 42.18 4.75
223 224 1.741770 GACAGTGACCGGTCATGCC 60.742 63.158 38.11 25.67 42.18 4.40
224 225 1.741770 GGACAGTGACCGGTCATGC 60.742 63.158 38.11 26.39 42.18 4.06
225 226 1.446099 CGGACAGTGACCGGTCATG 60.446 63.158 38.11 32.94 45.65 3.07
226 227 2.970639 CGGACAGTGACCGGTCAT 59.029 61.111 38.11 24.17 45.65 3.06
233 234 4.338539 ACGTCCGCGGACAGTGAC 62.339 66.667 46.26 27.07 44.77 3.67
234 235 4.337060 CACGTCCGCGGACAGTGA 62.337 66.667 44.78 23.22 44.28 3.41
235 236 4.640855 ACACGTCCGCGGACAGTG 62.641 66.667 44.80 44.80 45.50 3.66
236 237 4.338539 GACACGTCCGCGGACAGT 62.339 66.667 46.26 41.96 44.77 3.55
245 246 1.944676 GATGCGATCGGACACGTCC 60.945 63.158 18.30 6.12 46.18 4.79
246 247 1.944676 GGATGCGATCGGACACGTC 60.945 63.158 18.30 8.34 41.85 4.34
247 248 2.104331 GGATGCGATCGGACACGT 59.896 61.111 18.30 0.00 41.85 4.49
248 249 1.946156 CAGGATGCGATCGGACACG 60.946 63.158 18.30 0.00 42.74 4.49
249 250 4.018609 CAGGATGCGATCGGACAC 57.981 61.111 18.30 10.69 0.00 3.67
264 265 3.343617 TCAATCCCTTAAAAGTCCGCAG 58.656 45.455 0.00 0.00 0.00 5.18
265 266 3.426787 TCAATCCCTTAAAAGTCCGCA 57.573 42.857 0.00 0.00 0.00 5.69
266 267 4.983671 ATTCAATCCCTTAAAAGTCCGC 57.016 40.909 0.00 0.00 0.00 5.54
267 268 6.687604 ACAAATTCAATCCCTTAAAAGTCCG 58.312 36.000 0.00 0.00 0.00 4.79
268 269 7.666623 TGACAAATTCAATCCCTTAAAAGTCC 58.333 34.615 0.00 0.00 0.00 3.85
269 270 9.541143 TTTGACAAATTCAATCCCTTAAAAGTC 57.459 29.630 0.00 0.00 43.99 3.01
272 273 9.500785 GGATTTGACAAATTCAATCCCTTAAAA 57.499 29.630 14.46 0.00 43.99 1.52
273 274 7.816995 CGGATTTGACAAATTCAATCCCTTAAA 59.183 33.333 17.50 0.00 43.99 1.52
274 275 7.177568 TCGGATTTGACAAATTCAATCCCTTAA 59.822 33.333 17.50 0.41 43.99 1.85
275 276 6.661377 TCGGATTTGACAAATTCAATCCCTTA 59.339 34.615 17.50 2.35 43.99 2.69
276 277 5.480073 TCGGATTTGACAAATTCAATCCCTT 59.520 36.000 17.50 0.00 43.99 3.95
277 278 5.016173 TCGGATTTGACAAATTCAATCCCT 58.984 37.500 17.50 0.00 43.99 4.20
278 279 5.102313 GTCGGATTTGACAAATTCAATCCC 58.898 41.667 17.50 10.80 43.99 3.85
279 280 5.954335 AGTCGGATTTGACAAATTCAATCC 58.046 37.500 17.50 12.24 43.99 3.01
280 281 9.869844 CTATAGTCGGATTTGACAAATTCAATC 57.130 33.333 17.50 5.21 43.99 2.67
281 282 9.613428 TCTATAGTCGGATTTGACAAATTCAAT 57.387 29.630 17.50 7.96 43.99 2.57
282 283 8.879759 GTCTATAGTCGGATTTGACAAATTCAA 58.120 33.333 17.50 0.00 42.83 2.69
283 284 7.222031 CGTCTATAGTCGGATTTGACAAATTCA 59.778 37.037 17.50 4.19 41.41 2.57
284 285 7.556433 CGTCTATAGTCGGATTTGACAAATTC 58.444 38.462 14.46 11.64 41.41 2.17
285 286 6.018994 GCGTCTATAGTCGGATTTGACAAATT 60.019 38.462 18.69 1.50 41.41 1.82
286 287 5.462398 GCGTCTATAGTCGGATTTGACAAAT 59.538 40.000 18.69 13.24 41.41 2.32
287 288 4.802039 GCGTCTATAGTCGGATTTGACAAA 59.198 41.667 18.69 2.48 41.41 2.83
288 289 4.357142 GCGTCTATAGTCGGATTTGACAA 58.643 43.478 18.69 0.00 41.41 3.18
289 290 3.547413 CGCGTCTATAGTCGGATTTGACA 60.547 47.826 18.69 0.00 41.41 3.58
290 291 2.971915 CGCGTCTATAGTCGGATTTGAC 59.028 50.000 18.69 2.20 39.21 3.18
291 292 2.603892 GCGCGTCTATAGTCGGATTTGA 60.604 50.000 18.69 0.00 0.00 2.69
292 293 1.714460 GCGCGTCTATAGTCGGATTTG 59.286 52.381 18.69 0.00 0.00 2.32
293 294 1.607628 AGCGCGTCTATAGTCGGATTT 59.392 47.619 18.69 0.27 0.00 2.17
294 295 1.069159 CAGCGCGTCTATAGTCGGATT 60.069 52.381 18.69 2.17 0.00 3.01
295 296 0.517755 CAGCGCGTCTATAGTCGGAT 59.482 55.000 18.69 7.05 0.00 4.18
296 297 1.939597 CAGCGCGTCTATAGTCGGA 59.060 57.895 18.69 0.00 0.00 4.55
297 298 1.726322 GCAGCGCGTCTATAGTCGG 60.726 63.158 18.69 11.05 0.00 4.79
298 299 1.726322 GGCAGCGCGTCTATAGTCG 60.726 63.158 14.00 14.00 0.00 4.18
299 300 0.039074 ATGGCAGCGCGTCTATAGTC 60.039 55.000 8.43 0.00 0.00 2.59
300 301 1.068472 GTATGGCAGCGCGTCTATAGT 60.068 52.381 8.43 0.00 0.00 2.12
301 302 1.200252 AGTATGGCAGCGCGTCTATAG 59.800 52.381 8.43 0.00 0.00 1.31
302 303 1.199327 GAGTATGGCAGCGCGTCTATA 59.801 52.381 8.43 2.70 0.00 1.31
303 304 0.039074 GAGTATGGCAGCGCGTCTAT 60.039 55.000 8.43 3.77 0.00 1.98
304 305 1.359117 GAGTATGGCAGCGCGTCTA 59.641 57.895 8.43 0.00 0.00 2.59
305 306 2.105128 GAGTATGGCAGCGCGTCT 59.895 61.111 8.43 1.94 0.00 4.18
306 307 2.962253 GGAGTATGGCAGCGCGTC 60.962 66.667 8.43 0.00 0.00 5.19
307 308 1.744320 TATGGAGTATGGCAGCGCGT 61.744 55.000 8.43 0.00 0.00 6.01
308 309 1.006220 TATGGAGTATGGCAGCGCG 60.006 57.895 0.00 0.00 0.00 6.86
309 310 0.034059 AGTATGGAGTATGGCAGCGC 59.966 55.000 0.00 0.00 0.00 5.92
310 311 1.337260 GGAGTATGGAGTATGGCAGCG 60.337 57.143 0.00 0.00 0.00 5.18
311 312 1.694150 TGGAGTATGGAGTATGGCAGC 59.306 52.381 0.00 0.00 0.00 5.25
312 313 2.968574 ACTGGAGTATGGAGTATGGCAG 59.031 50.000 0.00 0.00 0.00 4.85
313 314 3.046283 ACTGGAGTATGGAGTATGGCA 57.954 47.619 0.00 0.00 0.00 4.92
314 315 3.388024 TGAACTGGAGTATGGAGTATGGC 59.612 47.826 0.00 0.00 0.00 4.40
315 316 4.651503 ACTGAACTGGAGTATGGAGTATGG 59.348 45.833 0.00 0.00 0.00 2.74
316 317 5.506483 CGACTGAACTGGAGTATGGAGTATG 60.506 48.000 0.00 0.00 0.00 2.39
317 318 4.580995 CGACTGAACTGGAGTATGGAGTAT 59.419 45.833 0.00 0.00 0.00 2.12
318 319 3.945921 CGACTGAACTGGAGTATGGAGTA 59.054 47.826 0.00 0.00 0.00 2.59
319 320 2.755655 CGACTGAACTGGAGTATGGAGT 59.244 50.000 0.00 0.00 0.00 3.85
320 321 2.099921 CCGACTGAACTGGAGTATGGAG 59.900 54.545 0.00 0.00 0.00 3.86
321 322 2.100197 CCGACTGAACTGGAGTATGGA 58.900 52.381 0.00 0.00 0.00 3.41
322 323 1.471676 GCCGACTGAACTGGAGTATGG 60.472 57.143 0.00 0.00 0.00 2.74
342 343 0.310854 GTGGAGCGGAACTTTTGTGG 59.689 55.000 0.00 0.00 0.00 4.17
347 348 1.238439 CATGTGTGGAGCGGAACTTT 58.762 50.000 0.00 0.00 0.00 2.66
351 352 4.377370 CACATGTGTGGAGCGGAA 57.623 55.556 18.03 0.00 42.10 4.30
364 365 0.107993 CATCAGTCGCCTCCACACAT 60.108 55.000 0.00 0.00 0.00 3.21
365 366 1.184970 TCATCAGTCGCCTCCACACA 61.185 55.000 0.00 0.00 0.00 3.72
367 368 1.607801 CCTCATCAGTCGCCTCCACA 61.608 60.000 0.00 0.00 0.00 4.17
375 376 5.088739 GTGTTTTTATTGCCTCATCAGTCG 58.911 41.667 0.00 0.00 0.00 4.18
378 379 6.072286 ACTCAGTGTTTTTATTGCCTCATCAG 60.072 38.462 0.00 0.00 0.00 2.90
386 387 5.113502 AGAGCACTCAGTGTTTTTATTGC 57.886 39.130 6.68 0.00 35.75 3.56
391 392 4.176271 GCAAAAGAGCACTCAGTGTTTTT 58.824 39.130 6.68 8.53 35.75 1.94
405 406 1.536766 TGTTGATCCAGCGCAAAAGAG 59.463 47.619 11.47 0.00 0.00 2.85
414 415 1.542915 ACACAAGCATGTTGATCCAGC 59.457 47.619 12.90 0.00 37.82 4.85
473 476 2.052782 ACCACCACACAACTTTCTCC 57.947 50.000 0.00 0.00 0.00 3.71
478 481 8.322828 TGTACATAATATACCACCACACAACTT 58.677 33.333 0.00 0.00 0.00 2.66
482 485 7.426606 ACTGTACATAATATACCACCACACA 57.573 36.000 0.00 0.00 0.00 3.72
516 519 8.329583 CGTGTACAGTATTTTTAACACACAGAA 58.670 33.333 0.00 0.00 37.63 3.02
518 521 7.843482 TCGTGTACAGTATTTTTAACACACAG 58.157 34.615 0.00 0.00 37.63 3.66
520 523 8.064447 TCTCGTGTACAGTATTTTTAACACAC 57.936 34.615 0.00 0.00 37.63 3.82
549 573 9.529325 CAAATCCTCTGATCGTATTACTACAAA 57.471 33.333 0.00 0.00 0.00 2.83
550 574 8.692710 ACAAATCCTCTGATCGTATTACTACAA 58.307 33.333 0.00 0.00 0.00 2.41
565 589 2.614057 GGACGCCATTACAAATCCTCTG 59.386 50.000 0.00 0.00 0.00 3.35
579 603 6.071334 TGGATAATTGTTAATTTTGGACGCCA 60.071 34.615 0.00 0.00 32.38 5.69
589 613 8.917088 CCTGACCAAGATGGATAATTGTTAATT 58.083 33.333 2.85 0.00 40.96 1.40
663 1020 6.344500 AGAAAGCTACATAGACATTGGACAG 58.656 40.000 0.00 0.00 0.00 3.51
676 1033 2.014068 GCGGAGGCAAGAAAGCTACAT 61.014 52.381 0.00 0.00 39.62 2.29
679 1036 0.391661 CAGCGGAGGCAAGAAAGCTA 60.392 55.000 0.00 0.00 43.41 3.32
698 1055 0.529992 CCCGCGTTATCTTGTCCTCC 60.530 60.000 4.92 0.00 0.00 4.30
773 1130 0.976641 TCTCGTGCTCAATCAAGGGT 59.023 50.000 0.00 0.00 0.00 4.34
781 1138 1.561643 AGGATCCTTCTCGTGCTCAA 58.438 50.000 9.02 0.00 0.00 3.02
782 1139 1.561643 AAGGATCCTTCTCGTGCTCA 58.438 50.000 21.89 0.00 0.00 4.26
892 1277 8.200792 AGATGGAGTGTTATGATTTAGTGTCTC 58.799 37.037 0.00 0.00 0.00 3.36
910 1295 2.027377 CAGGTTGAGCTTGAGATGGAGT 60.027 50.000 0.00 0.00 0.00 3.85
911 1296 2.630158 CAGGTTGAGCTTGAGATGGAG 58.370 52.381 0.00 0.00 0.00 3.86
912 1297 1.339438 GCAGGTTGAGCTTGAGATGGA 60.339 52.381 0.00 0.00 0.00 3.41
1054 1452 4.821589 CTTCGGGTGCGAGGAGGC 62.822 72.222 0.00 0.00 0.00 4.70
1566 2006 2.042762 CCCAGGTCCATCTCCCCA 59.957 66.667 0.00 0.00 0.00 4.96
1636 2076 2.434359 GCACGCCCCACTGTCTAC 60.434 66.667 0.00 0.00 0.00 2.59
1638 2078 4.320456 CAGCACGCCCCACTGTCT 62.320 66.667 0.00 0.00 0.00 3.41
1732 2172 3.447229 TGGAATCAACTGCGATAGAGTCA 59.553 43.478 0.00 0.00 39.76 3.41
1733 2173 4.046938 TGGAATCAACTGCGATAGAGTC 57.953 45.455 0.00 0.00 39.76 3.36
1822 2264 4.830826 ACAGCATCTGATTGCATGTATG 57.169 40.909 12.37 6.06 45.23 2.39
1841 2283 7.308770 CCTTGTCATTTCTGATGCTTAAGAACA 60.309 37.037 6.67 1.83 32.26 3.18
1847 2289 7.309377 CCTTTTCCTTGTCATTTCTGATGCTTA 60.309 37.037 0.00 0.00 32.98 3.09
1860 2302 2.093394 TCACGTGTCCTTTTCCTTGTCA 60.093 45.455 16.51 0.00 0.00 3.58
1866 2308 4.625972 TTTCTTTCACGTGTCCTTTTCC 57.374 40.909 16.51 0.00 0.00 3.13
1975 2422 4.034048 GGTTGCCAGTTATAGTCATTCACG 59.966 45.833 0.00 0.00 0.00 4.35
2039 2486 1.669265 GAATTAGCGTACTTGGGCCAC 59.331 52.381 5.23 0.00 0.00 5.01
2040 2487 1.279558 TGAATTAGCGTACTTGGGCCA 59.720 47.619 0.00 0.00 0.00 5.36
2042 2489 4.155280 TCTTTTGAATTAGCGTACTTGGGC 59.845 41.667 0.00 0.00 0.00 5.36
2043 2490 5.873179 TCTTTTGAATTAGCGTACTTGGG 57.127 39.130 0.00 0.00 0.00 4.12
2061 2510 0.251341 GGTGTCCAGGCCACATCTTT 60.251 55.000 5.01 0.00 34.46 2.52
2107 2556 1.207791 CCCAGGGATCTGTTGCTACT 58.792 55.000 0.00 0.00 39.31 2.57
2194 2643 1.272490 CGATATAGGAAAGGAGGCGCA 59.728 52.381 10.83 0.00 0.00 6.09
2203 2652 2.290260 CCTGGCCATGCGATATAGGAAA 60.290 50.000 5.51 0.00 0.00 3.13
2257 2712 7.484641 CACGTGTCATCTTCAAAAGAAAGAAAA 59.515 33.333 7.58 0.00 41.63 2.29
2280 2735 6.539649 TCTGAAAACAAATCTAGGTTCACG 57.460 37.500 0.00 0.00 0.00 4.35
2334 2789 6.434028 ACAATTATTGCACCACACTATCAAGT 59.566 34.615 4.68 0.00 35.91 3.16
2335 2790 6.748658 CACAATTATTGCACCACACTATCAAG 59.251 38.462 4.68 0.00 0.00 3.02
2336 2791 6.619744 CACAATTATTGCACCACACTATCAA 58.380 36.000 4.68 0.00 0.00 2.57
2349 2804 6.238266 CCAATCCAATTCTGCACAATTATTGC 60.238 38.462 13.37 4.58 40.63 3.56
2369 2824 3.290948 TTGCACCCTATACACCCAATC 57.709 47.619 0.00 0.00 0.00 2.67
2370 2825 3.748645 TTTGCACCCTATACACCCAAT 57.251 42.857 0.00 0.00 0.00 3.16
2392 2847 2.414481 CTGTTCACTCGAAGAATGCAGG 59.586 50.000 0.00 0.00 34.09 4.85
2504 2961 2.732282 CGCACTGAGACGATTCAAGCTA 60.732 50.000 0.00 0.00 0.00 3.32
2505 2962 1.719600 GCACTGAGACGATTCAAGCT 58.280 50.000 0.00 0.00 0.00 3.74
2509 2966 4.830826 ATATACGCACTGAGACGATTCA 57.169 40.909 6.64 0.00 0.00 2.57
2528 2985 7.364408 GCGGGAGGAATGGACAGTATAAATATA 60.364 40.741 0.00 0.00 0.00 0.86
2529 2986 6.576442 GCGGGAGGAATGGACAGTATAAATAT 60.576 42.308 0.00 0.00 0.00 1.28
2530 2987 5.279809 GCGGGAGGAATGGACAGTATAAATA 60.280 44.000 0.00 0.00 0.00 1.40
2531 2988 4.505039 GCGGGAGGAATGGACAGTATAAAT 60.505 45.833 0.00 0.00 0.00 1.40
2532 2989 3.181458 GCGGGAGGAATGGACAGTATAAA 60.181 47.826 0.00 0.00 0.00 1.40
2535 2992 0.759346 GCGGGAGGAATGGACAGTAT 59.241 55.000 0.00 0.00 0.00 2.12
2544 3003 1.595093 CCTTTTTGCGCGGGAGGAAT 61.595 55.000 8.83 0.00 0.00 3.01
2578 3037 8.661345 GGAGTAATACTGAGGGAAGGATTAATT 58.339 37.037 0.00 0.00 35.25 1.40
2579 3038 7.237887 GGGAGTAATACTGAGGGAAGGATTAAT 59.762 40.741 0.00 0.00 35.25 1.40
2580 3039 6.557633 GGGAGTAATACTGAGGGAAGGATTAA 59.442 42.308 0.00 0.00 35.25 1.40
2581 3040 6.082707 GGGAGTAATACTGAGGGAAGGATTA 58.917 44.000 0.00 0.00 32.74 1.75
2582 3041 4.908481 GGGAGTAATACTGAGGGAAGGATT 59.092 45.833 0.00 0.00 34.91 3.01
2608 3067 9.196552 CATTTCAGCGATAAGTAATACAGATCA 57.803 33.333 0.00 0.00 0.00 2.92
2613 3072 7.931407 ACATCCATTTCAGCGATAAGTAATACA 59.069 33.333 0.00 0.00 0.00 2.29
2614 3073 8.311650 ACATCCATTTCAGCGATAAGTAATAC 57.688 34.615 0.00 0.00 0.00 1.89
2616 3075 9.155975 GATACATCCATTTCAGCGATAAGTAAT 57.844 33.333 0.00 0.00 0.00 1.89
2617 3076 8.367911 AGATACATCCATTTCAGCGATAAGTAA 58.632 33.333 0.00 0.00 0.00 2.24
2618 3077 7.896811 AGATACATCCATTTCAGCGATAAGTA 58.103 34.615 0.00 0.00 0.00 2.24
2619 3078 6.763355 AGATACATCCATTTCAGCGATAAGT 58.237 36.000 0.00 0.00 0.00 2.24
2620 3079 8.763049 TTAGATACATCCATTTCAGCGATAAG 57.237 34.615 0.00 0.00 0.00 1.73
2621 3080 9.725019 ATTTAGATACATCCATTTCAGCGATAA 57.275 29.630 0.00 0.00 0.00 1.75
2622 3081 9.154847 CATTTAGATACATCCATTTCAGCGATA 57.845 33.333 0.00 0.00 0.00 2.92
2623 3082 7.663081 ACATTTAGATACATCCATTTCAGCGAT 59.337 33.333 0.00 0.00 0.00 4.58
2624 3083 6.992123 ACATTTAGATACATCCATTTCAGCGA 59.008 34.615 0.00 0.00 0.00 4.93
2625 3084 7.194607 ACATTTAGATACATCCATTTCAGCG 57.805 36.000 0.00 0.00 0.00 5.18
2633 3092 9.056005 GCACTGAAATACATTTAGATACATCCA 57.944 33.333 0.00 0.00 0.00 3.41
2634 3093 9.277783 AGCACTGAAATACATTTAGATACATCC 57.722 33.333 0.00 0.00 0.00 3.51
2652 3111 8.405531 GCTTAAATGGATGTATTTAGCACTGAA 58.594 33.333 0.00 0.00 34.87 3.02
2653 3112 7.555914 TGCTTAAATGGATGTATTTAGCACTGA 59.444 33.333 0.00 0.00 34.97 3.41
2654 3113 7.706159 TGCTTAAATGGATGTATTTAGCACTG 58.294 34.615 0.00 0.00 34.97 3.66
2655 3114 7.880160 TGCTTAAATGGATGTATTTAGCACT 57.120 32.000 0.00 0.00 34.97 4.40
2656 3115 7.973388 TGTTGCTTAAATGGATGTATTTAGCAC 59.027 33.333 0.00 0.00 36.95 4.40
2657 3116 8.060931 TGTTGCTTAAATGGATGTATTTAGCA 57.939 30.769 0.00 0.00 36.30 3.49
2658 3117 8.925161 TTGTTGCTTAAATGGATGTATTTAGC 57.075 30.769 0.00 0.00 34.87 3.09
2666 3125 8.971321 GCATATTACTTGTTGCTTAAATGGATG 58.029 33.333 0.00 0.00 32.41 3.51
2667 3126 8.694540 TGCATATTACTTGTTGCTTAAATGGAT 58.305 29.630 0.00 0.00 36.10 3.41
2668 3127 8.060931 TGCATATTACTTGTTGCTTAAATGGA 57.939 30.769 0.00 0.00 36.10 3.41
2669 3128 8.876275 ATGCATATTACTTGTTGCTTAAATGG 57.124 30.769 0.00 0.00 36.10 3.16
2670 3129 9.740239 AGATGCATATTACTTGTTGCTTAAATG 57.260 29.630 0.00 0.00 36.10 2.32
2671 3130 9.740239 CAGATGCATATTACTTGTTGCTTAAAT 57.260 29.630 0.00 0.00 36.10 1.40
2672 3131 8.955388 TCAGATGCATATTACTTGTTGCTTAAA 58.045 29.630 0.00 0.00 36.10 1.52
2673 3132 8.504812 TCAGATGCATATTACTTGTTGCTTAA 57.495 30.769 0.00 0.00 36.10 1.85
2674 3133 8.681486 ATCAGATGCATATTACTTGTTGCTTA 57.319 30.769 0.00 0.00 36.10 3.09
2675 3134 7.578310 ATCAGATGCATATTACTTGTTGCTT 57.422 32.000 0.00 0.00 36.10 3.91
2676 3135 7.423199 CAATCAGATGCATATTACTTGTTGCT 58.577 34.615 0.00 0.00 36.10 3.91
2677 3136 7.618964 CAATCAGATGCATATTACTTGTTGC 57.381 36.000 0.00 0.00 35.67 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.