Multiple sequence alignment - TraesCS5B01G311500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G311500 chr5B 100.000 2639 0 0 1 2639 493161071 493158433 0.000000e+00 4874.0
1 TraesCS5B01G311500 chr5B 90.893 571 39 11 1 560 406404337 406404905 0.000000e+00 754.0
2 TraesCS5B01G311500 chr5B 87.452 526 53 7 1017 1540 493169042 493168528 6.290000e-166 593.0
3 TraesCS5B01G311500 chr5B 87.568 370 44 2 1032 1400 492782542 492782910 6.750000e-116 427.0
4 TraesCS5B01G311500 chr5B 77.356 658 106 34 1041 1673 493125319 493124680 1.500000e-92 350.0
5 TraesCS5B01G311500 chr5B 78.020 596 92 27 1041 1627 493286547 493285982 3.250000e-89 339.0
6 TraesCS5B01G311500 chr5B 83.088 136 20 1 1499 1634 493086008 493085876 1.280000e-23 121.0
7 TraesCS5B01G311500 chr5B 100.000 30 0 0 1713 1742 583287073 583287102 3.670000e-04 56.5
8 TraesCS5B01G311500 chr5D 93.493 1291 57 13 773 2051 410843518 410842243 0.000000e+00 1893.0
9 TraesCS5B01G311500 chr5D 87.154 506 54 5 1036 1540 410846859 410846364 4.930000e-157 564.0
10 TraesCS5B01G311500 chr5D 92.442 344 22 4 216 557 305889094 305889435 3.050000e-134 488.0
11 TraesCS5B01G311500 chr5D 87.838 370 43 2 1032 1400 410620374 410620742 1.450000e-117 433.0
12 TraesCS5B01G311500 chr5D 91.795 195 9 2 84 278 305888790 305888977 5.600000e-67 265.0
13 TraesCS5B01G311500 chr5D 82.734 139 21 1 1496 1634 410621000 410621135 1.280000e-23 121.0
14 TraesCS5B01G311500 chr5D 82.963 135 17 5 1496 1627 410873710 410873579 1.660000e-22 117.0
15 TraesCS5B01G311500 chr5D 91.566 83 7 0 1 83 305888677 305888759 5.970000e-22 115.0
16 TraesCS5B01G311500 chr5A 92.685 1121 63 6 561 1681 522605989 522604888 0.000000e+00 1598.0
17 TraesCS5B01G311500 chr5A 88.538 506 47 5 1036 1540 522611852 522611357 1.040000e-168 603.0
18 TraesCS5B01G311500 chr5A 81.411 581 79 23 1032 1596 522425282 522425849 5.180000e-122 448.0
19 TraesCS5B01G311500 chr5A 90.385 312 12 7 1751 2051 522604886 522604582 6.850000e-106 394.0
20 TraesCS5B01G311500 chr5A 78.010 623 87 33 1041 1638 522357577 522356980 1.940000e-91 346.0
21 TraesCS5B01G311500 chr5A 81.295 139 23 1 1496 1634 522224400 522224535 2.780000e-20 110.0
22 TraesCS5B01G311500 chr3B 91.463 574 36 11 1 563 778969225 778969796 0.000000e+00 776.0
23 TraesCS5B01G311500 chr3B 90.609 575 39 11 1 563 778897214 778897785 0.000000e+00 749.0
24 TraesCS5B01G311500 chr7B 94.867 487 23 1 83 567 637211943 637211457 0.000000e+00 760.0
25 TraesCS5B01G311500 chr3A 93.064 346 21 3 216 560 507763309 507763652 1.090000e-138 503.0
26 TraesCS5B01G311500 chr3A 91.977 349 25 3 216 563 743448805 743448459 1.100000e-133 486.0
27 TraesCS5B01G311500 chr3A 84.950 299 20 12 1 275 507762898 507763195 2.000000e-71 279.0
28 TraesCS5B01G311500 chr3A 84.768 302 21 12 1 278 743449222 743448922 2.000000e-71 279.0
29 TraesCS5B01G311500 chr3A 90.148 203 6 4 83 278 232868281 232868086 4.360000e-63 252.0
30 TraesCS5B01G311500 chr1A 92.023 351 25 3 216 565 22046190 22045842 8.490000e-135 490.0
31 TraesCS5B01G311500 chr1A 96.923 65 2 0 17 81 536973586 536973522 2.780000e-20 110.0
32 TraesCS5B01G311500 chr1A 90.698 43 4 0 1700 1742 516064756 516064714 1.020000e-04 58.4
33 TraesCS5B01G311500 chr2D 91.908 346 25 3 216 560 88351473 88351816 5.110000e-132 481.0
34 TraesCS5B01G311500 chr2D 84.138 290 28 13 1 278 88351072 88351355 5.600000e-67 265.0
35 TraesCS5B01G311500 chr2D 83.784 296 29 10 1 278 423351735 423352029 2.010000e-66 263.0
36 TraesCS5B01G311500 chr1B 81.520 579 82 20 1032 1596 562433795 562433228 1.110000e-123 453.0
37 TraesCS5B01G311500 chr3D 85.813 289 28 11 1 278 6685622 6685336 7.140000e-76 294.0
38 TraesCS5B01G311500 chr3D 75.304 247 49 9 2114 2354 544439125 544438885 9.990000e-20 108.0
39 TraesCS5B01G311500 chr3D 86.486 74 9 1 1680 1752 554685748 554685821 2.180000e-11 80.5
40 TraesCS5B01G311500 chr3D 79.310 116 21 2 2113 2228 253572548 253572436 7.830000e-11 78.7
41 TraesCS5B01G311500 chr3D 89.130 46 4 1 2099 2143 12385183 12385138 3.670000e-04 56.5
42 TraesCS5B01G311500 chrUn 84.437 302 22 12 1 278 357069 356769 9.310000e-70 274.0
43 TraesCS5B01G311500 chr6A 90.640 203 5 4 83 278 112605380 112605185 9.370000e-65 257.0
44 TraesCS5B01G311500 chr6A 76.423 123 25 3 2112 2233 12363209 12363090 2.190000e-06 63.9
45 TraesCS5B01G311500 chr6B 89.041 73 7 1 1683 1754 701661327 701661255 3.620000e-14 89.8
46 TraesCS5B01G311500 chr2A 88.000 75 8 1 1680 1753 489842161 489842087 1.300000e-13 87.9
47 TraesCS5B01G311500 chr2A 78.448 116 22 2 2113 2228 712061259 712061371 3.640000e-09 73.1
48 TraesCS5B01G311500 chr2A 84.483 58 6 3 1686 1742 776556582 776556637 1.000000e-03 54.7
49 TraesCS5B01G311500 chr4A 97.500 40 1 0 1700 1739 150818380 150818419 4.710000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G311500 chr5B 493158433 493161071 2638 True 4874.000000 4874 100.000000 1 2639 1 chr5B.!!$R3 2638
1 TraesCS5B01G311500 chr5B 406404337 406404905 568 False 754.000000 754 90.893000 1 560 1 chr5B.!!$F1 559
2 TraesCS5B01G311500 chr5B 493168528 493169042 514 True 593.000000 593 87.452000 1017 1540 1 chr5B.!!$R4 523
3 TraesCS5B01G311500 chr5B 493124680 493125319 639 True 350.000000 350 77.356000 1041 1673 1 chr5B.!!$R2 632
4 TraesCS5B01G311500 chr5B 493285982 493286547 565 True 339.000000 339 78.020000 1041 1627 1 chr5B.!!$R5 586
5 TraesCS5B01G311500 chr5D 410842243 410846859 4616 True 1228.500000 1893 90.323500 773 2051 2 chr5D.!!$R2 1278
6 TraesCS5B01G311500 chr5D 305888677 305889435 758 False 289.333333 488 91.934333 1 557 3 chr5D.!!$F1 556
7 TraesCS5B01G311500 chr5D 410620374 410621135 761 False 277.000000 433 85.286000 1032 1634 2 chr5D.!!$F2 602
8 TraesCS5B01G311500 chr5A 522604582 522605989 1407 True 996.000000 1598 91.535000 561 2051 2 chr5A.!!$R3 1490
9 TraesCS5B01G311500 chr5A 522425282 522425849 567 False 448.000000 448 81.411000 1032 1596 1 chr5A.!!$F2 564
10 TraesCS5B01G311500 chr5A 522356980 522357577 597 True 346.000000 346 78.010000 1041 1638 1 chr5A.!!$R1 597
11 TraesCS5B01G311500 chr3B 778969225 778969796 571 False 776.000000 776 91.463000 1 563 1 chr3B.!!$F2 562
12 TraesCS5B01G311500 chr3B 778897214 778897785 571 False 749.000000 749 90.609000 1 563 1 chr3B.!!$F1 562
13 TraesCS5B01G311500 chr3A 507762898 507763652 754 False 391.000000 503 89.007000 1 560 2 chr3A.!!$F1 559
14 TraesCS5B01G311500 chr3A 743448459 743449222 763 True 382.500000 486 88.372500 1 563 2 chr3A.!!$R2 562
15 TraesCS5B01G311500 chr2D 88351072 88351816 744 False 373.000000 481 88.023000 1 560 2 chr2D.!!$F2 559
16 TraesCS5B01G311500 chr1B 562433228 562433795 567 True 453.000000 453 81.520000 1032 1596 1 chr1B.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1310 0.53646 TTCTTCCACGCCTTGGTTCC 60.536 55.0 0.0 0.0 46.97 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2553 6794 0.032615 CTGGTGAGAGGGGACTAGCT 60.033 60.0 0.0 0.0 44.43 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.167851 CTTGTGGGCACGTTCATCAT 58.832 50.000 0.00 0.00 0.00 2.45
281 676 3.566322 CGGTAGCTAGCTTCTACATGAGT 59.434 47.826 24.88 0.00 38.45 3.41
335 730 5.105310 AGTCAACTCTCCTGTATTTGCGTAT 60.105 40.000 0.00 0.00 0.00 3.06
387 783 3.257393 CTCACCGCATGATAGGAATAGC 58.743 50.000 0.00 0.00 36.48 2.97
566 962 5.889289 GCTATCCAAACAACCCCTAAATGTA 59.111 40.000 0.00 0.00 0.00 2.29
619 1015 0.940126 CATACAGCCGGACAAGATGC 59.060 55.000 5.05 0.00 0.00 3.91
642 1038 1.134487 GAAATGCAGCTGCGCGTTA 59.866 52.632 32.11 16.16 45.83 3.18
646 1042 4.196826 GCAGCTGCGCGTTAGACG 62.197 66.667 25.23 2.88 45.88 4.18
657 1053 1.461317 CGTTAGACGCATGACCGACG 61.461 60.000 0.00 0.00 33.65 5.12
658 1054 1.515519 TTAGACGCATGACCGACGC 60.516 57.895 0.00 0.00 0.00 5.19
667 1063 3.103911 GACCGACGCGTCCACAAG 61.104 66.667 31.84 17.86 0.00 3.16
671 1067 1.208358 CGACGCGTCCACAAGTCTA 59.792 57.895 31.84 0.00 0.00 2.59
674 1070 0.666577 ACGCGTCCACAAGTCTAAGC 60.667 55.000 5.58 0.00 0.00 3.09
678 1074 1.135083 CGTCCACAAGTCTAAGCGGAT 60.135 52.381 0.00 0.00 0.00 4.18
681 1077 3.130693 GTCCACAAGTCTAAGCGGATACT 59.869 47.826 0.00 0.00 0.00 2.12
690 1086 5.773680 AGTCTAAGCGGATACTGCCTTATTA 59.226 40.000 0.00 0.00 36.90 0.98
698 1094 5.624738 CGGATACTGCCTTATTACCATCCTC 60.625 48.000 0.00 0.00 0.00 3.71
704 1100 4.947388 TGCCTTATTACCATCCTCAAACAC 59.053 41.667 0.00 0.00 0.00 3.32
707 1103 5.943416 CCTTATTACCATCCTCAAACACACA 59.057 40.000 0.00 0.00 0.00 3.72
715 1111 5.693104 CCATCCTCAAACACACAAAATTCAG 59.307 40.000 0.00 0.00 0.00 3.02
724 1120 7.692908 AACACACAAAATTCAGATTAAACGG 57.307 32.000 0.00 0.00 0.00 4.44
743 1139 3.708734 CGTCGTTTGGGACCGTGC 61.709 66.667 0.00 0.00 33.30 5.34
756 1152 4.368808 CGTGCGTTGGAGTTGCCG 62.369 66.667 0.00 0.00 40.66 5.69
762 1158 1.598130 GTTGGAGTTGCCGTGAGCT 60.598 57.895 0.00 0.00 44.23 4.09
763 1159 1.148273 TTGGAGTTGCCGTGAGCTT 59.852 52.632 0.00 0.00 44.23 3.74
764 1160 1.165907 TTGGAGTTGCCGTGAGCTTG 61.166 55.000 0.00 0.00 44.23 4.01
765 1161 2.558313 GAGTTGCCGTGAGCTTGC 59.442 61.111 0.00 0.00 44.23 4.01
766 1162 1.963338 GAGTTGCCGTGAGCTTGCT 60.963 57.895 0.00 0.00 44.23 3.91
767 1163 1.510480 GAGTTGCCGTGAGCTTGCTT 61.510 55.000 0.00 0.00 44.23 3.91
768 1164 1.081840 GTTGCCGTGAGCTTGCTTC 60.082 57.895 0.00 0.00 44.23 3.86
769 1165 2.260869 TTGCCGTGAGCTTGCTTCC 61.261 57.895 0.00 0.00 44.23 3.46
770 1166 2.359230 GCCGTGAGCTTGCTTCCT 60.359 61.111 0.00 0.00 38.99 3.36
771 1167 1.968540 GCCGTGAGCTTGCTTCCTT 60.969 57.895 0.00 0.00 38.99 3.36
772 1168 1.871772 CCGTGAGCTTGCTTCCTTG 59.128 57.895 0.00 0.00 0.00 3.61
773 1169 1.208614 CGTGAGCTTGCTTCCTTGC 59.791 57.895 0.00 0.00 0.00 4.01
774 1170 1.509644 CGTGAGCTTGCTTCCTTGCA 61.510 55.000 0.00 0.00 41.65 4.08
795 1191 4.038642 GCAAAGGAAGGAGATAGAGATCGT 59.961 45.833 0.00 0.00 37.15 3.73
887 1283 4.403585 GGTAACCACTAGACCATCTTCC 57.596 50.000 0.00 0.00 33.16 3.46
902 1298 7.350921 AGACCATCTTCCCTATTTATTCTTCCA 59.649 37.037 0.00 0.00 0.00 3.53
908 1304 4.165372 TCCCTATTTATTCTTCCACGCCTT 59.835 41.667 0.00 0.00 0.00 4.35
914 1310 0.536460 TTCTTCCACGCCTTGGTTCC 60.536 55.000 0.00 0.00 46.97 3.62
938 1334 1.630369 CTTCTCATCCCAACTCCACCA 59.370 52.381 0.00 0.00 0.00 4.17
963 1359 1.680338 ACCAACCTGCAACTCTCAAC 58.320 50.000 0.00 0.00 0.00 3.18
977 1373 1.221466 CTCAACGCAGCGACTTTCCA 61.221 55.000 24.65 0.00 0.00 3.53
998 1394 2.943033 ACTAGTTTTTGACGCTGCAACT 59.057 40.909 0.00 3.27 0.00 3.16
1089 5090 2.597510 GCAGGGCGGACCAAGTTT 60.598 61.111 0.92 0.00 43.89 2.66
1365 5372 2.278857 CGGGAGATCAAGGACGCG 60.279 66.667 3.53 3.53 0.00 6.01
1656 5877 9.991906 TGGAACTAATTATCCGACTAATTAAGG 57.008 33.333 9.31 0.00 38.63 2.69
1678 5899 8.863872 AAGGCATGTACAGTTTTAGAAACTAT 57.136 30.769 0.33 0.00 0.00 2.12
1728 5957 7.422399 ACACTAATGTAATGTCAAAAACGCTT 58.578 30.769 0.00 0.00 37.26 4.68
1920 6161 3.801307 TGGTAGTCCAGTACTCACAGA 57.199 47.619 0.00 0.00 39.80 3.41
1958 6199 6.183360 CCATGGACCGGAATCAATCAAAATAA 60.183 38.462 9.46 0.00 0.00 1.40
1960 6201 5.712446 TGGACCGGAATCAATCAAAATAACA 59.288 36.000 9.46 0.00 0.00 2.41
1961 6202 6.127758 TGGACCGGAATCAATCAAAATAACAG 60.128 38.462 9.46 0.00 0.00 3.16
1962 6203 6.094881 GGACCGGAATCAATCAAAATAACAGA 59.905 38.462 9.46 0.00 0.00 3.41
1963 6204 7.088589 ACCGGAATCAATCAAAATAACAGAG 57.911 36.000 9.46 0.00 0.00 3.35
1991 6232 4.821805 ACAACATGGAGAAGAAAACGACAT 59.178 37.500 0.00 0.00 0.00 3.06
2031 6272 6.358118 TGTTGAGTGATACAACTTGACAAC 57.642 37.500 0.00 0.00 45.08 3.32
2051 6292 4.519540 ACAATAATGGTTGTTGGACAGC 57.480 40.909 4.60 0.00 39.15 4.40
2061 6302 3.719268 TGTTGGACAGCCATCAATAGT 57.281 42.857 0.00 0.00 45.46 2.12
2062 6303 4.835284 TGTTGGACAGCCATCAATAGTA 57.165 40.909 0.00 0.00 45.46 1.82
2063 6304 5.372343 TGTTGGACAGCCATCAATAGTAT 57.628 39.130 0.00 0.00 45.46 2.12
2064 6305 5.125356 TGTTGGACAGCCATCAATAGTATG 58.875 41.667 0.00 0.00 45.46 2.39
2065 6306 5.126067 GTTGGACAGCCATCAATAGTATGT 58.874 41.667 0.00 0.00 45.46 2.29
2066 6307 4.960938 TGGACAGCCATCAATAGTATGTC 58.039 43.478 0.00 0.00 39.92 3.06
2067 6308 4.655649 TGGACAGCCATCAATAGTATGTCT 59.344 41.667 0.00 0.00 39.92 3.41
2068 6309 5.838521 TGGACAGCCATCAATAGTATGTCTA 59.161 40.000 0.00 0.00 39.92 2.59
2069 6310 6.326323 TGGACAGCCATCAATAGTATGTCTAA 59.674 38.462 0.00 0.00 39.92 2.10
2070 6311 7.147567 TGGACAGCCATCAATAGTATGTCTAAA 60.148 37.037 0.00 0.00 39.92 1.85
2071 6312 7.715249 GGACAGCCATCAATAGTATGTCTAAAA 59.285 37.037 0.00 0.00 36.64 1.52
2072 6313 9.277783 GACAGCCATCAATAGTATGTCTAAAAT 57.722 33.333 0.00 0.00 34.26 1.82
2085 6326 8.851145 AGTATGTCTAAAATATCTCGCTGAAGA 58.149 33.333 0.00 0.00 0.00 2.87
2086 6327 9.632807 GTATGTCTAAAATATCTCGCTGAAGAT 57.367 33.333 0.00 0.00 39.35 2.40
2087 6328 8.755696 ATGTCTAAAATATCTCGCTGAAGATC 57.244 34.615 0.00 0.00 37.24 2.75
2088 6329 7.716612 TGTCTAAAATATCTCGCTGAAGATCA 58.283 34.615 0.00 0.00 37.24 2.92
2089 6330 7.864882 TGTCTAAAATATCTCGCTGAAGATCAG 59.135 37.037 3.00 3.00 46.90 2.90
2090 6331 7.328249 GTCTAAAATATCTCGCTGAAGATCAGG 59.672 40.741 9.25 0.57 44.43 3.86
2097 6338 1.418334 GCTGAAGATCAGGGCTAGGA 58.582 55.000 9.25 0.00 44.43 2.94
2098 6339 1.344114 GCTGAAGATCAGGGCTAGGAG 59.656 57.143 9.25 0.00 44.43 3.69
2099 6340 1.344114 CTGAAGATCAGGGCTAGGAGC 59.656 57.143 0.00 0.00 40.71 4.70
2100 6341 1.343377 TGAAGATCAGGGCTAGGAGCA 60.343 52.381 0.21 0.00 44.75 4.26
2101 6342 1.344114 GAAGATCAGGGCTAGGAGCAG 59.656 57.143 0.21 0.00 44.75 4.24
2102 6343 1.120795 AGATCAGGGCTAGGAGCAGC 61.121 60.000 0.21 0.00 44.75 5.25
2103 6344 1.383664 ATCAGGGCTAGGAGCAGCA 60.384 57.895 0.00 0.00 44.75 4.41
2104 6345 1.694133 ATCAGGGCTAGGAGCAGCAC 61.694 60.000 0.00 0.00 44.75 4.40
2106 6347 2.671070 GGGCTAGGAGCAGCACAA 59.329 61.111 0.00 0.00 44.75 3.33
2107 6348 1.746991 GGGCTAGGAGCAGCACAAC 60.747 63.158 0.00 0.00 44.75 3.32
2108 6349 1.746991 GGCTAGGAGCAGCACAACC 60.747 63.158 0.00 0.00 44.75 3.77
2109 6350 2.103042 GCTAGGAGCAGCACAACCG 61.103 63.158 0.00 0.00 41.89 4.44
2110 6351 1.591703 CTAGGAGCAGCACAACCGA 59.408 57.895 0.00 0.00 0.00 4.69
2111 6352 0.176680 CTAGGAGCAGCACAACCGAT 59.823 55.000 0.00 0.00 0.00 4.18
2112 6353 0.108186 TAGGAGCAGCACAACCGATG 60.108 55.000 0.00 0.00 0.00 3.84
2113 6354 1.375908 GGAGCAGCACAACCGATGA 60.376 57.895 0.00 0.00 0.00 2.92
2114 6355 1.364626 GGAGCAGCACAACCGATGAG 61.365 60.000 0.00 0.00 0.00 2.90
2115 6356 0.671781 GAGCAGCACAACCGATGAGT 60.672 55.000 0.00 0.00 0.00 3.41
2116 6357 0.608130 AGCAGCACAACCGATGAGTA 59.392 50.000 0.00 0.00 0.00 2.59
2117 6358 1.001974 AGCAGCACAACCGATGAGTAA 59.998 47.619 0.00 0.00 0.00 2.24
2118 6359 1.804151 GCAGCACAACCGATGAGTAAA 59.196 47.619 0.00 0.00 0.00 2.01
2119 6360 2.420022 GCAGCACAACCGATGAGTAAAT 59.580 45.455 0.00 0.00 0.00 1.40
2120 6361 3.119849 GCAGCACAACCGATGAGTAAATT 60.120 43.478 0.00 0.00 0.00 1.82
2121 6362 4.406069 CAGCACAACCGATGAGTAAATTG 58.594 43.478 0.00 0.00 0.00 2.32
2122 6363 3.119849 AGCACAACCGATGAGTAAATTGC 60.120 43.478 0.00 0.00 0.00 3.56
2123 6364 3.119849 GCACAACCGATGAGTAAATTGCT 60.120 43.478 0.00 0.00 0.00 3.91
2124 6365 4.651994 CACAACCGATGAGTAAATTGCTC 58.348 43.478 4.08 4.08 0.00 4.26
2125 6366 4.154015 CACAACCGATGAGTAAATTGCTCA 59.846 41.667 15.65 15.65 45.59 4.26
2126 6367 4.759693 ACAACCGATGAGTAAATTGCTCAA 59.240 37.500 17.09 2.31 44.82 3.02
2127 6368 5.240623 ACAACCGATGAGTAAATTGCTCAAA 59.759 36.000 17.09 0.00 44.82 2.69
2128 6369 5.957842 ACCGATGAGTAAATTGCTCAAAA 57.042 34.783 17.09 0.00 44.82 2.44
2129 6370 5.699839 ACCGATGAGTAAATTGCTCAAAAC 58.300 37.500 17.09 10.77 44.82 2.43
2130 6371 5.095490 CCGATGAGTAAATTGCTCAAAACC 58.905 41.667 17.09 6.89 44.82 3.27
2131 6372 5.335583 CCGATGAGTAAATTGCTCAAAACCA 60.336 40.000 17.09 0.00 44.82 3.67
2132 6373 6.324819 CGATGAGTAAATTGCTCAAAACCAT 58.675 36.000 17.09 0.32 44.82 3.55
2133 6374 6.470235 CGATGAGTAAATTGCTCAAAACCATC 59.530 38.462 17.09 8.55 44.82 3.51
2134 6375 6.647334 TGAGTAAATTGCTCAAAACCATCA 57.353 33.333 11.26 0.00 39.70 3.07
2135 6376 7.230849 TGAGTAAATTGCTCAAAACCATCAT 57.769 32.000 11.26 0.00 39.70 2.45
2136 6377 8.347004 TGAGTAAATTGCTCAAAACCATCATA 57.653 30.769 11.26 0.00 39.70 2.15
2137 6378 8.970020 TGAGTAAATTGCTCAAAACCATCATAT 58.030 29.630 11.26 0.00 39.70 1.78
2138 6379 9.807649 GAGTAAATTGCTCAAAACCATCATATT 57.192 29.630 6.21 0.00 33.45 1.28
2141 6382 8.851541 AAATTGCTCAAAACCATCATATTTGT 57.148 26.923 0.00 0.00 35.92 2.83
2142 6383 7.837202 ATTGCTCAAAACCATCATATTTGTG 57.163 32.000 0.00 0.00 35.92 3.33
2143 6384 6.343716 TGCTCAAAACCATCATATTTGTGT 57.656 33.333 0.00 0.00 35.92 3.72
2144 6385 6.757237 TGCTCAAAACCATCATATTTGTGTT 58.243 32.000 0.00 0.00 35.92 3.32
2145 6386 7.215789 TGCTCAAAACCATCATATTTGTGTTT 58.784 30.769 0.00 0.00 35.92 2.83
2146 6387 8.363390 TGCTCAAAACCATCATATTTGTGTTTA 58.637 29.630 0.00 0.00 35.92 2.01
2147 6388 9.369904 GCTCAAAACCATCATATTTGTGTTTAT 57.630 29.630 0.00 0.00 35.92 1.40
2172 6413 6.747659 AAACTTTGTTATCATCGTTGTTGC 57.252 33.333 0.00 0.00 0.00 4.17
2173 6414 4.794169 ACTTTGTTATCATCGTTGTTGCC 58.206 39.130 0.00 0.00 0.00 4.52
2174 6415 4.277174 ACTTTGTTATCATCGTTGTTGCCA 59.723 37.500 0.00 0.00 0.00 4.92
2175 6416 4.837896 TTGTTATCATCGTTGTTGCCAA 57.162 36.364 0.00 0.00 0.00 4.52
2176 6417 4.837896 TGTTATCATCGTTGTTGCCAAA 57.162 36.364 0.00 0.00 30.94 3.28
2177 6418 5.188327 TGTTATCATCGTTGTTGCCAAAA 57.812 34.783 0.00 0.00 30.94 2.44
2178 6419 5.592054 TGTTATCATCGTTGTTGCCAAAAA 58.408 33.333 0.00 0.00 30.94 1.94
2199 6440 6.715347 AAAAATAACAGAAGACCACTGCTT 57.285 33.333 0.00 0.00 38.74 3.91
2200 6441 6.715347 AAAATAACAGAAGACCACTGCTTT 57.285 33.333 0.00 0.00 38.74 3.51
2201 6442 6.715347 AAATAACAGAAGACCACTGCTTTT 57.285 33.333 0.00 0.00 38.74 2.27
2202 6443 5.695851 ATAACAGAAGACCACTGCTTTTG 57.304 39.130 0.00 0.00 38.74 2.44
2213 6454 4.728058 GCTTTTGCGCCAAGTGAA 57.272 50.000 15.64 0.00 34.86 3.18
2214 6455 3.199764 GCTTTTGCGCCAAGTGAAT 57.800 47.368 15.64 0.00 34.86 2.57
2215 6456 2.346099 GCTTTTGCGCCAAGTGAATA 57.654 45.000 15.64 0.00 34.86 1.75
2216 6457 2.671596 GCTTTTGCGCCAAGTGAATAA 58.328 42.857 15.64 0.00 34.86 1.40
2217 6458 2.408368 GCTTTTGCGCCAAGTGAATAAC 59.592 45.455 15.64 0.00 34.86 1.89
2218 6459 3.637432 CTTTTGCGCCAAGTGAATAACA 58.363 40.909 4.18 0.00 0.00 2.41
2219 6460 3.717400 TTTGCGCCAAGTGAATAACAA 57.283 38.095 4.18 0.00 0.00 2.83
2220 6461 3.717400 TTGCGCCAAGTGAATAACAAA 57.283 38.095 4.18 0.00 0.00 2.83
2221 6462 3.932545 TGCGCCAAGTGAATAACAAAT 57.067 38.095 4.18 0.00 0.00 2.32
2222 6463 3.832276 TGCGCCAAGTGAATAACAAATC 58.168 40.909 4.18 0.00 0.00 2.17
2223 6464 3.254411 TGCGCCAAGTGAATAACAAATCA 59.746 39.130 4.18 0.00 0.00 2.57
2224 6465 3.608073 GCGCCAAGTGAATAACAAATCAC 59.392 43.478 0.00 0.00 44.92 3.06
2225 6466 4.793071 CGCCAAGTGAATAACAAATCACA 58.207 39.130 8.43 0.00 46.55 3.58
2226 6467 4.616802 CGCCAAGTGAATAACAAATCACAC 59.383 41.667 8.43 0.00 46.55 3.82
2227 6468 5.562696 CGCCAAGTGAATAACAAATCACACT 60.563 40.000 8.43 0.00 46.55 3.55
2228 6469 6.215845 GCCAAGTGAATAACAAATCACACTT 58.784 36.000 0.00 0.00 46.55 3.16
2229 6470 7.367285 GCCAAGTGAATAACAAATCACACTTA 58.633 34.615 0.00 0.00 46.55 2.24
2230 6471 8.028938 GCCAAGTGAATAACAAATCACACTTAT 58.971 33.333 0.00 0.00 46.55 1.73
2231 6472 9.912634 CCAAGTGAATAACAAATCACACTTATT 57.087 29.630 0.00 0.00 46.55 1.40
2233 6474 9.825972 AAGTGAATAACAAATCACACTTATTCG 57.174 29.630 0.00 0.00 46.55 3.34
2234 6475 8.450964 AGTGAATAACAAATCACACTTATTCGG 58.549 33.333 8.43 0.00 46.55 4.30
2235 6476 8.447833 GTGAATAACAAATCACACTTATTCGGA 58.552 33.333 1.30 0.00 44.19 4.55
2236 6477 9.004717 TGAATAACAAATCACACTTATTCGGAA 57.995 29.630 0.00 0.00 37.97 4.30
2237 6478 9.274065 GAATAACAAATCACACTTATTCGGAAC 57.726 33.333 0.00 0.00 30.10 3.62
2238 6479 6.877611 AACAAATCACACTTATTCGGAACT 57.122 33.333 0.00 0.00 0.00 3.01
2239 6480 6.241207 ACAAATCACACTTATTCGGAACTG 57.759 37.500 0.00 0.00 0.00 3.16
2240 6481 5.995282 ACAAATCACACTTATTCGGAACTGA 59.005 36.000 0.00 0.00 0.00 3.41
2241 6482 6.147821 ACAAATCACACTTATTCGGAACTGAG 59.852 38.462 0.00 0.00 0.00 3.35
2242 6483 4.866508 TCACACTTATTCGGAACTGAGT 57.133 40.909 0.00 0.00 0.00 3.41
2243 6484 4.806330 TCACACTTATTCGGAACTGAGTC 58.194 43.478 0.00 0.00 0.00 3.36
2244 6485 3.608506 CACACTTATTCGGAACTGAGTCG 59.391 47.826 0.00 0.00 0.00 4.18
2245 6486 2.599082 CACTTATTCGGAACTGAGTCGC 59.401 50.000 0.00 0.00 0.00 5.19
2246 6487 2.230508 ACTTATTCGGAACTGAGTCGCA 59.769 45.455 0.00 0.00 0.00 5.10
2247 6488 3.119101 ACTTATTCGGAACTGAGTCGCAT 60.119 43.478 0.00 0.00 0.00 4.73
2248 6489 1.927895 ATTCGGAACTGAGTCGCATC 58.072 50.000 0.00 0.00 0.00 3.91
2249 6490 0.888619 TTCGGAACTGAGTCGCATCT 59.111 50.000 0.00 0.00 0.00 2.90
2250 6491 1.746470 TCGGAACTGAGTCGCATCTA 58.254 50.000 0.00 0.00 0.00 1.98
2251 6492 2.089201 TCGGAACTGAGTCGCATCTAA 58.911 47.619 0.00 0.00 0.00 2.10
2252 6493 2.159421 TCGGAACTGAGTCGCATCTAAC 60.159 50.000 0.00 0.00 0.00 2.34
2253 6494 2.415491 CGGAACTGAGTCGCATCTAACA 60.415 50.000 0.00 0.00 0.00 2.41
2254 6495 3.182967 GGAACTGAGTCGCATCTAACAG 58.817 50.000 0.00 0.00 0.00 3.16
2255 6496 2.285827 ACTGAGTCGCATCTAACAGC 57.714 50.000 0.00 0.00 0.00 4.40
2272 6513 2.898729 AGCGGAACTGACTGATATGG 57.101 50.000 0.00 0.00 0.00 2.74
2273 6514 1.202580 AGCGGAACTGACTGATATGGC 60.203 52.381 0.00 0.00 0.00 4.40
2274 6515 1.871080 CGGAACTGACTGATATGGCC 58.129 55.000 0.00 0.00 0.00 5.36
2275 6516 1.541233 CGGAACTGACTGATATGGCCC 60.541 57.143 0.00 0.00 0.00 5.80
2276 6517 1.490490 GGAACTGACTGATATGGCCCA 59.510 52.381 0.00 0.00 0.00 5.36
2277 6518 2.565841 GAACTGACTGATATGGCCCAC 58.434 52.381 0.00 0.00 0.00 4.61
2278 6519 1.583556 ACTGACTGATATGGCCCACA 58.416 50.000 0.00 0.00 0.00 4.17
2279 6520 1.210478 ACTGACTGATATGGCCCACAC 59.790 52.381 0.00 0.00 0.00 3.82
2280 6521 0.177836 TGACTGATATGGCCCACACG 59.822 55.000 0.00 0.00 0.00 4.49
2281 6522 0.178068 GACTGATATGGCCCACACGT 59.822 55.000 0.00 0.00 0.00 4.49
2282 6523 0.178068 ACTGATATGGCCCACACGTC 59.822 55.000 0.00 0.00 0.00 4.34
2283 6524 0.177836 CTGATATGGCCCACACGTCA 59.822 55.000 0.00 0.00 0.00 4.35
2284 6525 0.177836 TGATATGGCCCACACGTCAG 59.822 55.000 0.00 0.00 0.00 3.51
2285 6526 0.532862 GATATGGCCCACACGTCAGG 60.533 60.000 0.00 0.00 0.00 3.86
2295 6536 0.822164 ACACGTCAGGGTGGTATAGC 59.178 55.000 0.00 0.00 42.23 2.97
2296 6537 0.821517 CACGTCAGGGTGGTATAGCA 59.178 55.000 0.00 0.00 34.27 3.49
2297 6538 1.112113 ACGTCAGGGTGGTATAGCAG 58.888 55.000 4.51 0.00 0.00 4.24
2298 6539 0.389391 CGTCAGGGTGGTATAGCAGG 59.611 60.000 4.51 0.00 0.00 4.85
2299 6540 1.497161 GTCAGGGTGGTATAGCAGGT 58.503 55.000 4.51 0.00 0.00 4.00
2300 6541 2.674420 GTCAGGGTGGTATAGCAGGTA 58.326 52.381 4.51 0.00 0.00 3.08
2301 6542 3.240302 GTCAGGGTGGTATAGCAGGTAT 58.760 50.000 4.51 0.00 0.00 2.73
2302 6543 4.413760 GTCAGGGTGGTATAGCAGGTATA 58.586 47.826 4.51 0.00 0.00 1.47
2303 6544 4.220163 GTCAGGGTGGTATAGCAGGTATAC 59.780 50.000 18.09 18.09 42.06 1.47
2304 6545 4.140876 TCAGGGTGGTATAGCAGGTATACA 60.141 45.833 24.65 12.49 43.87 2.29
2305 6546 4.777896 CAGGGTGGTATAGCAGGTATACAT 59.222 45.833 24.65 0.00 43.87 2.29
2306 6547 4.777896 AGGGTGGTATAGCAGGTATACATG 59.222 45.833 24.65 13.10 43.87 3.21
2307 6548 4.081087 GGGTGGTATAGCAGGTATACATGG 60.081 50.000 24.65 1.85 43.87 3.66
2308 6549 4.775780 GGTGGTATAGCAGGTATACATGGA 59.224 45.833 24.65 8.35 43.87 3.41
2309 6550 5.105310 GGTGGTATAGCAGGTATACATGGAG 60.105 48.000 24.65 0.00 43.87 3.86
2310 6551 5.480772 GTGGTATAGCAGGTATACATGGAGT 59.519 44.000 24.65 0.00 43.87 3.85
2311 6552 6.662234 GTGGTATAGCAGGTATACATGGAGTA 59.338 42.308 24.65 5.60 43.87 2.59
2312 6553 7.342284 GTGGTATAGCAGGTATACATGGAGTAT 59.658 40.741 24.65 3.94 43.87 2.12
2313 6554 7.342026 TGGTATAGCAGGTATACATGGAGTATG 59.658 40.741 24.65 0.00 43.87 2.39
2314 6555 4.543590 AGCAGGTATACATGGAGTATGC 57.456 45.455 18.43 2.92 43.20 3.14
2315 6556 4.163427 AGCAGGTATACATGGAGTATGCT 58.837 43.478 18.43 5.18 43.20 3.79
2316 6557 4.221703 AGCAGGTATACATGGAGTATGCTC 59.778 45.833 18.43 1.56 39.79 4.26
2317 6558 4.221703 GCAGGTATACATGGAGTATGCTCT 59.778 45.833 18.43 0.00 43.20 4.09
2318 6559 5.718146 CAGGTATACATGGAGTATGCTCTG 58.282 45.833 9.67 4.76 43.20 3.35
2319 6560 5.478332 CAGGTATACATGGAGTATGCTCTGA 59.522 44.000 9.67 0.00 43.20 3.27
2320 6561 5.714333 AGGTATACATGGAGTATGCTCTGAG 59.286 44.000 10.82 0.00 43.20 3.35
2321 6562 5.105554 GGTATACATGGAGTATGCTCTGAGG 60.106 48.000 10.82 2.59 43.20 3.86
2322 6563 2.756907 ACATGGAGTATGCTCTGAGGT 58.243 47.619 10.82 3.19 40.59 3.85
2323 6564 2.433604 ACATGGAGTATGCTCTGAGGTG 59.566 50.000 10.82 5.59 40.59 4.00
2324 6565 1.489481 TGGAGTATGCTCTGAGGTGG 58.511 55.000 10.82 0.00 41.38 4.61
2325 6566 1.007118 TGGAGTATGCTCTGAGGTGGA 59.993 52.381 10.82 0.00 41.38 4.02
2326 6567 1.686052 GGAGTATGCTCTGAGGTGGAG 59.314 57.143 10.82 0.00 41.38 3.86
2327 6568 2.660572 GAGTATGCTCTGAGGTGGAGA 58.339 52.381 6.83 0.00 38.66 3.71
2328 6569 2.622942 GAGTATGCTCTGAGGTGGAGAG 59.377 54.545 6.83 0.00 40.10 3.20
2329 6570 1.686052 GTATGCTCTGAGGTGGAGAGG 59.314 57.143 6.83 0.00 37.93 3.69
2330 6571 0.690411 ATGCTCTGAGGTGGAGAGGG 60.690 60.000 6.83 0.00 37.93 4.30
2331 6572 1.000993 GCTCTGAGGTGGAGAGGGA 59.999 63.158 6.83 0.00 37.93 4.20
2332 6573 1.042559 GCTCTGAGGTGGAGAGGGAG 61.043 65.000 6.83 0.00 37.93 4.30
2333 6574 1.000993 TCTGAGGTGGAGAGGGAGC 59.999 63.158 0.00 0.00 0.00 4.70
2334 6575 2.039624 TGAGGTGGAGAGGGAGCC 59.960 66.667 0.00 0.00 0.00 4.70
2335 6576 2.766229 GAGGTGGAGAGGGAGCCC 60.766 72.222 0.00 0.00 0.00 5.19
2336 6577 3.615811 AGGTGGAGAGGGAGCCCA 61.616 66.667 8.53 0.00 38.92 5.36
2338 6579 3.403558 GTGGAGAGGGAGCCCACC 61.404 72.222 8.53 8.65 43.32 4.61
2339 6580 3.615811 TGGAGAGGGAGCCCACCT 61.616 66.667 8.53 4.28 42.18 4.00
2340 6581 3.086600 GGAGAGGGAGCCCACCTG 61.087 72.222 8.53 0.00 38.79 4.00
2341 6582 2.284995 GAGAGGGAGCCCACCTGT 60.285 66.667 8.53 0.00 38.79 4.00
2342 6583 2.284995 AGAGGGAGCCCACCTGTC 60.285 66.667 8.53 0.00 38.79 3.51
2343 6584 2.607750 GAGGGAGCCCACCTGTCA 60.608 66.667 8.53 0.00 38.79 3.58
2344 6585 2.608988 AGGGAGCCCACCTGTCAG 60.609 66.667 8.53 0.00 36.85 3.51
2345 6586 4.416738 GGGAGCCCACCTGTCAGC 62.417 72.222 0.00 0.00 35.81 4.26
2346 6587 3.325753 GGAGCCCACCTGTCAGCT 61.326 66.667 0.00 0.00 38.56 4.24
2347 6588 2.267324 GAGCCCACCTGTCAGCTC 59.733 66.667 0.00 0.00 44.36 4.09
2348 6589 3.322318 GAGCCCACCTGTCAGCTCC 62.322 68.421 6.76 0.00 44.76 4.70
2349 6590 4.416738 GCCCACCTGTCAGCTCCC 62.417 72.222 0.00 0.00 0.00 4.30
2350 6591 2.608988 CCCACCTGTCAGCTCCCT 60.609 66.667 0.00 0.00 0.00 4.20
2351 6592 2.664081 CCCACCTGTCAGCTCCCTC 61.664 68.421 0.00 0.00 0.00 4.30
2352 6593 1.611851 CCACCTGTCAGCTCCCTCT 60.612 63.158 0.00 0.00 0.00 3.69
2353 6594 1.612395 CCACCTGTCAGCTCCCTCTC 61.612 65.000 0.00 0.00 0.00 3.20
2354 6595 1.680651 ACCTGTCAGCTCCCTCTCG 60.681 63.158 0.00 0.00 0.00 4.04
2355 6596 2.493973 CTGTCAGCTCCCTCTCGC 59.506 66.667 0.00 0.00 0.00 5.03
2356 6597 3.071206 TGTCAGCTCCCTCTCGCC 61.071 66.667 0.00 0.00 0.00 5.54
2357 6598 3.844090 GTCAGCTCCCTCTCGCCC 61.844 72.222 0.00 0.00 0.00 6.13
2358 6599 4.382541 TCAGCTCCCTCTCGCCCA 62.383 66.667 0.00 0.00 0.00 5.36
2359 6600 3.393970 CAGCTCCCTCTCGCCCAA 61.394 66.667 0.00 0.00 0.00 4.12
2360 6601 2.607750 AGCTCCCTCTCGCCCAAA 60.608 61.111 0.00 0.00 0.00 3.28
2361 6602 1.997874 AGCTCCCTCTCGCCCAAAT 60.998 57.895 0.00 0.00 0.00 2.32
2362 6603 1.077429 GCTCCCTCTCGCCCAAATT 60.077 57.895 0.00 0.00 0.00 1.82
2363 6604 1.098129 GCTCCCTCTCGCCCAAATTC 61.098 60.000 0.00 0.00 0.00 2.17
2364 6605 0.811616 CTCCCTCTCGCCCAAATTCG 60.812 60.000 0.00 0.00 0.00 3.34
2365 6606 1.078426 CCCTCTCGCCCAAATTCGT 60.078 57.895 0.00 0.00 0.00 3.85
2366 6607 1.369091 CCCTCTCGCCCAAATTCGTG 61.369 60.000 0.00 0.00 0.00 4.35
2367 6608 1.425428 CTCTCGCCCAAATTCGTGC 59.575 57.895 0.00 0.00 0.00 5.34
2368 6609 1.982073 CTCTCGCCCAAATTCGTGCC 61.982 60.000 0.00 0.00 0.00 5.01
2369 6610 3.381169 CTCGCCCAAATTCGTGCCG 62.381 63.158 0.00 0.00 0.00 5.69
2371 6612 4.049640 GCCCAAATTCGTGCCGCA 62.050 61.111 0.00 0.00 0.00 5.69
2372 6613 2.647875 CCCAAATTCGTGCCGCAA 59.352 55.556 0.00 0.00 0.00 4.85
2373 6614 1.732683 CCCAAATTCGTGCCGCAAC 60.733 57.895 0.00 0.00 0.00 4.17
2374 6615 2.080062 CCAAATTCGTGCCGCAACG 61.080 57.895 0.00 1.61 44.92 4.10
2375 6616 2.428403 AAATTCGTGCCGCAACGC 60.428 55.556 0.00 0.00 43.26 4.84
2376 6617 3.187699 AAATTCGTGCCGCAACGCA 62.188 52.632 0.00 0.00 43.26 5.24
2377 6618 2.470801 AAATTCGTGCCGCAACGCAT 62.471 50.000 0.00 0.00 43.26 4.73
2378 6619 2.849142 AATTCGTGCCGCAACGCATC 62.849 55.000 0.00 0.00 43.26 3.91
2381 6622 4.759096 GTGCCGCAACGCATCCAC 62.759 66.667 0.00 0.00 41.70 4.02
2383 6624 4.759096 GCCGCAACGCATCCACAC 62.759 66.667 0.00 0.00 0.00 3.82
2384 6625 3.049674 CCGCAACGCATCCACACT 61.050 61.111 0.00 0.00 0.00 3.55
2385 6626 2.476051 CGCAACGCATCCACACTC 59.524 61.111 0.00 0.00 0.00 3.51
2386 6627 2.476051 GCAACGCATCCACACTCG 59.524 61.111 0.00 0.00 0.00 4.18
2387 6628 2.476051 CAACGCATCCACACTCGC 59.524 61.111 0.00 0.00 0.00 5.03
2388 6629 2.742372 AACGCATCCACACTCGCC 60.742 61.111 0.00 0.00 0.00 5.54
2392 6633 4.758251 CATCCACACTCGCCGGCA 62.758 66.667 28.98 12.94 0.00 5.69
2393 6634 4.015406 ATCCACACTCGCCGGCAA 62.015 61.111 28.98 7.25 0.00 4.52
2394 6635 3.958147 ATCCACACTCGCCGGCAAG 62.958 63.158 28.98 22.08 0.00 4.01
2408 6649 3.121030 CAAGCGCGCCTTGTAGCT 61.121 61.111 30.33 13.47 44.74 3.32
2409 6650 2.815647 AAGCGCGCCTTGTAGCTC 60.816 61.111 30.33 0.00 39.25 4.09
2410 6651 4.821589 AGCGCGCCTTGTAGCTCC 62.822 66.667 30.33 0.00 34.48 4.70
2434 6675 3.577313 GCTCGCGCCATCCCTTTC 61.577 66.667 0.00 0.00 0.00 2.62
2435 6676 2.897350 CTCGCGCCATCCCTTTCC 60.897 66.667 0.00 0.00 0.00 3.13
2436 6677 4.483243 TCGCGCCATCCCTTTCCC 62.483 66.667 0.00 0.00 0.00 3.97
2439 6680 4.875713 CGCCATCCCTTTCCCGGG 62.876 72.222 16.85 16.85 46.13 5.73
2440 6681 4.522975 GCCATCCCTTTCCCGGGG 62.523 72.222 23.50 6.77 44.78 5.73
2441 6682 3.820843 CCATCCCTTTCCCGGGGG 61.821 72.222 23.50 14.57 44.78 5.40
2442 6683 3.021263 CATCCCTTTCCCGGGGGT 61.021 66.667 23.50 0.00 44.78 4.95
2443 6684 3.021263 ATCCCTTTCCCGGGGGTG 61.021 66.667 23.50 10.63 44.78 4.61
2469 6710 4.436998 CCACCTGCTCCGTCGGTC 62.437 72.222 11.88 5.28 0.00 4.79
2470 6711 4.436998 CACCTGCTCCGTCGGTCC 62.437 72.222 11.88 4.10 0.00 4.46
2473 6714 4.180946 CTGCTCCGTCGGTCCGAG 62.181 72.222 15.95 8.91 36.23 4.63
2475 6716 4.176851 GCTCCGTCGGTCCGAGTC 62.177 72.222 15.95 2.61 36.23 3.36
2476 6717 2.436292 CTCCGTCGGTCCGAGTCT 60.436 66.667 15.95 0.00 36.23 3.24
2477 6718 2.033141 TCCGTCGGTCCGAGTCTT 59.967 61.111 15.95 0.00 36.23 3.01
2478 6719 1.979831 CTCCGTCGGTCCGAGTCTTC 61.980 65.000 15.95 0.95 36.23 2.87
2479 6720 2.039405 CCGTCGGTCCGAGTCTTCT 61.039 63.158 15.95 0.00 36.23 2.85
2480 6721 1.424635 CGTCGGTCCGAGTCTTCTC 59.575 63.158 15.95 0.00 36.23 2.87
2481 6722 1.801983 GTCGGTCCGAGTCTTCTCC 59.198 63.158 15.95 0.00 36.23 3.71
2482 6723 0.959372 GTCGGTCCGAGTCTTCTCCA 60.959 60.000 15.95 0.00 36.23 3.86
2483 6724 0.677098 TCGGTCCGAGTCTTCTCCAG 60.677 60.000 10.71 0.00 37.40 3.86
2484 6725 1.513622 GGTCCGAGTCTTCTCCAGC 59.486 63.158 0.00 0.00 37.40 4.85
2485 6726 1.137825 GTCCGAGTCTTCTCCAGCG 59.862 63.158 0.00 0.00 37.40 5.18
2486 6727 1.002502 TCCGAGTCTTCTCCAGCGA 60.003 57.895 0.00 0.00 37.40 4.93
2487 6728 1.137825 CCGAGTCTTCTCCAGCGAC 59.862 63.158 0.00 0.00 37.40 5.19
2488 6729 1.226156 CGAGTCTTCTCCAGCGACG 60.226 63.158 0.00 0.00 37.40 5.12
2489 6730 1.877367 GAGTCTTCTCCAGCGACGT 59.123 57.895 0.00 0.00 34.87 4.34
2490 6731 0.455295 GAGTCTTCTCCAGCGACGTG 60.455 60.000 0.00 0.00 34.87 4.49
2491 6732 2.089349 GTCTTCTCCAGCGACGTGC 61.089 63.158 0.00 0.00 46.98 5.34
2535 6776 4.200283 CCCGACGAGCTCTGCCTC 62.200 72.222 12.85 0.08 0.00 4.70
2536 6777 4.200283 CCGACGAGCTCTGCCTCC 62.200 72.222 12.85 0.00 0.00 4.30
2537 6778 3.137459 CGACGAGCTCTGCCTCCT 61.137 66.667 12.85 0.00 0.00 3.69
2538 6779 2.804856 GACGAGCTCTGCCTCCTC 59.195 66.667 12.85 0.00 0.00 3.71
2540 6781 3.137459 CGAGCTCTGCCTCCTCGT 61.137 66.667 12.85 0.00 42.41 4.18
2541 6782 2.804856 GAGCTCTGCCTCCTCGTC 59.195 66.667 6.43 0.00 0.00 4.20
2542 6783 1.752694 GAGCTCTGCCTCCTCGTCT 60.753 63.158 6.43 0.00 0.00 4.18
2543 6784 2.003658 GAGCTCTGCCTCCTCGTCTG 62.004 65.000 6.43 0.00 0.00 3.51
2544 6785 2.493973 CTCTGCCTCCTCGTCTGC 59.506 66.667 0.00 0.00 0.00 4.26
2545 6786 3.408501 CTCTGCCTCCTCGTCTGCG 62.409 68.421 0.00 0.00 39.92 5.18
2548 6789 4.521062 GCCTCCTCGTCTGCGCAT 62.521 66.667 12.24 0.00 38.14 4.73
2549 6790 2.584418 CCTCCTCGTCTGCGCATG 60.584 66.667 12.24 5.41 38.14 4.06
2550 6791 2.584418 CTCCTCGTCTGCGCATGG 60.584 66.667 12.24 8.84 38.14 3.66
2551 6792 4.819761 TCCTCGTCTGCGCATGGC 62.820 66.667 12.24 5.90 43.96 4.40
2562 6803 2.280457 GCATGGCGAGCTAGTCCC 60.280 66.667 0.00 0.00 0.00 4.46
2563 6804 2.423446 CATGGCGAGCTAGTCCCC 59.577 66.667 0.00 0.00 0.00 4.81
2564 6805 2.136878 CATGGCGAGCTAGTCCCCT 61.137 63.158 0.00 0.00 0.00 4.79
2565 6806 1.834822 ATGGCGAGCTAGTCCCCTC 60.835 63.158 0.00 0.00 0.00 4.30
2566 6807 2.123640 GGCGAGCTAGTCCCCTCT 60.124 66.667 0.00 0.00 0.00 3.69
2567 6808 2.197605 GGCGAGCTAGTCCCCTCTC 61.198 68.421 0.00 0.00 0.00 3.20
2568 6809 1.454111 GCGAGCTAGTCCCCTCTCA 60.454 63.158 0.00 0.00 0.00 3.27
2569 6810 1.730451 GCGAGCTAGTCCCCTCTCAC 61.730 65.000 0.00 0.00 0.00 3.51
2570 6811 1.104577 CGAGCTAGTCCCCTCTCACC 61.105 65.000 0.00 0.00 0.00 4.02
2571 6812 0.033011 GAGCTAGTCCCCTCTCACCA 60.033 60.000 0.00 0.00 0.00 4.17
2572 6813 0.032615 AGCTAGTCCCCTCTCACCAG 60.033 60.000 0.00 0.00 0.00 4.00
2573 6814 1.045911 GCTAGTCCCCTCTCACCAGG 61.046 65.000 0.00 0.00 0.00 4.45
2589 6830 4.162690 GGGCGCCCCACTCACTAG 62.163 72.222 36.64 0.00 44.65 2.57
2590 6831 4.840005 GGCGCCCCACTCACTAGC 62.840 72.222 18.11 0.00 0.00 3.42
2591 6832 4.082523 GCGCCCCACTCACTAGCA 62.083 66.667 0.00 0.00 0.00 3.49
2592 6833 2.125512 CGCCCCACTCACTAGCAC 60.126 66.667 0.00 0.00 0.00 4.40
2593 6834 2.125512 GCCCCACTCACTAGCACG 60.126 66.667 0.00 0.00 0.00 5.34
2594 6835 2.943978 GCCCCACTCACTAGCACGT 61.944 63.158 0.00 0.00 0.00 4.49
2595 6836 1.671742 CCCCACTCACTAGCACGTT 59.328 57.895 0.00 0.00 0.00 3.99
2596 6837 0.389948 CCCCACTCACTAGCACGTTC 60.390 60.000 0.00 0.00 0.00 3.95
2597 6838 0.603569 CCCACTCACTAGCACGTTCT 59.396 55.000 0.00 0.00 0.00 3.01
2598 6839 1.402984 CCCACTCACTAGCACGTTCTC 60.403 57.143 0.00 0.00 0.00 2.87
2599 6840 1.607713 CACTCACTAGCACGTTCTCG 58.392 55.000 0.00 0.00 43.34 4.04
2600 6841 0.522180 ACTCACTAGCACGTTCTCGG 59.478 55.000 0.00 0.00 41.85 4.63
2601 6842 0.798771 CTCACTAGCACGTTCTCGGC 60.799 60.000 0.00 0.00 41.85 5.54
2602 6843 2.152699 CACTAGCACGTTCTCGGCG 61.153 63.158 0.00 0.00 41.85 6.46
2603 6844 2.579787 CTAGCACGTTCTCGGCGG 60.580 66.667 7.21 0.00 41.85 6.13
2604 6845 3.338126 CTAGCACGTTCTCGGCGGT 62.338 63.158 7.21 0.00 41.85 5.68
2605 6846 3.620300 TAGCACGTTCTCGGCGGTG 62.620 63.158 7.21 8.04 41.85 4.94
2607 6848 2.355363 CACGTTCTCGGCGGTGAA 60.355 61.111 7.21 9.61 41.85 3.18
2608 6849 2.049433 ACGTTCTCGGCGGTGAAG 60.049 61.111 7.21 8.74 41.85 3.02
2609 6850 2.257371 CGTTCTCGGCGGTGAAGA 59.743 61.111 7.21 0.00 0.00 2.87
2610 6851 1.801913 CGTTCTCGGCGGTGAAGAG 60.802 63.158 7.21 5.92 0.00 2.85
2611 6852 2.095252 GTTCTCGGCGGTGAAGAGC 61.095 63.158 7.21 0.09 32.42 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.023673 ACAAGGATCAGCGAGAGAGAG 58.976 52.381 0.00 0.00 0.00 3.20
54 55 7.066645 CACATCTGCAGATTCTAATTCTTTGGA 59.933 37.037 26.70 0.00 31.21 3.53
299 694 5.662208 AGGAGAGTTGACTCATCAATCTCAT 59.338 40.000 13.20 14.64 46.43 2.90
300 695 5.022122 AGGAGAGTTGACTCATCAATCTCA 58.978 41.667 13.20 0.00 46.43 3.27
335 730 0.459899 CCCGTCACATTCCATCGAGA 59.540 55.000 0.00 0.00 0.00 4.04
387 783 9.481340 TTCCTTATTCGATAATGATTCAGAGTG 57.519 33.333 0.00 0.00 0.00 3.51
566 962 6.183360 TGCCAACACAGTTTATTTCATCAACT 60.183 34.615 0.00 0.00 0.00 3.16
638 1034 1.461317 CGTCGGTCATGCGTCTAACG 61.461 60.000 0.00 0.00 45.88 3.18
657 1053 1.352156 CCGCTTAGACTTGTGGACGC 61.352 60.000 2.63 0.00 36.02 5.19
658 1054 0.242825 TCCGCTTAGACTTGTGGACG 59.757 55.000 6.41 0.00 37.87 4.79
659 1055 2.674796 ATCCGCTTAGACTTGTGGAC 57.325 50.000 11.15 0.00 44.32 4.02
667 1063 2.892784 AAGGCAGTATCCGCTTAGAC 57.107 50.000 0.00 0.00 0.00 2.59
671 1067 3.389983 TGGTAATAAGGCAGTATCCGCTT 59.610 43.478 0.00 0.00 0.00 4.68
674 1070 4.223032 AGGATGGTAATAAGGCAGTATCCG 59.777 45.833 0.00 0.00 38.25 4.18
678 1074 6.069905 TGTTTGAGGATGGTAATAAGGCAGTA 60.070 38.462 0.00 0.00 0.00 2.74
681 1077 4.947388 GTGTTTGAGGATGGTAATAAGGCA 59.053 41.667 0.00 0.00 0.00 4.75
690 1086 5.128499 TGAATTTTGTGTGTTTGAGGATGGT 59.872 36.000 0.00 0.00 0.00 3.55
698 1094 8.055402 CCGTTTAATCTGAATTTTGTGTGTTTG 58.945 33.333 0.00 0.00 0.00 2.93
704 1100 6.140110 ACGTCCGTTTAATCTGAATTTTGTG 58.860 36.000 0.00 0.00 0.00 3.33
707 1103 5.614760 CGACGTCCGTTTAATCTGAATTTT 58.385 37.500 10.58 0.00 0.00 1.82
724 1120 2.028043 ACGGTCCCAAACGACGTC 59.972 61.111 5.18 5.18 33.30 4.34
731 1127 2.902846 CCAACGCACGGTCCCAAA 60.903 61.111 0.00 0.00 0.00 3.28
737 1133 3.276846 GCAACTCCAACGCACGGT 61.277 61.111 0.00 0.00 0.00 4.83
738 1134 4.025401 GGCAACTCCAACGCACGG 62.025 66.667 0.00 0.00 34.01 4.94
743 1139 2.954753 GCTCACGGCAACTCCAACG 61.955 63.158 0.00 0.00 41.35 4.10
756 1152 2.334307 TGCAAGGAAGCAAGCTCAC 58.666 52.632 0.00 0.00 42.46 3.51
769 1165 5.350504 TCTCTATCTCCTTCCTTTGCAAG 57.649 43.478 0.00 0.00 0.00 4.01
770 1166 5.452496 CGATCTCTATCTCCTTCCTTTGCAA 60.452 44.000 0.00 0.00 0.00 4.08
771 1167 4.038522 CGATCTCTATCTCCTTCCTTTGCA 59.961 45.833 0.00 0.00 0.00 4.08
772 1168 4.038642 ACGATCTCTATCTCCTTCCTTTGC 59.961 45.833 0.00 0.00 0.00 3.68
773 1169 5.508825 CCACGATCTCTATCTCCTTCCTTTG 60.509 48.000 0.00 0.00 0.00 2.77
774 1170 4.586841 CCACGATCTCTATCTCCTTCCTTT 59.413 45.833 0.00 0.00 0.00 3.11
887 1283 5.424121 CAAGGCGTGGAAGAATAAATAGG 57.576 43.478 0.00 0.00 0.00 2.57
914 1310 2.573462 TGGAGTTGGGATGAGAAGAAGG 59.427 50.000 0.00 0.00 0.00 3.46
938 1334 2.024414 GAGTTGCAGGTTGGTTTGAGT 58.976 47.619 0.00 0.00 0.00 3.41
963 1359 0.388649 ACTAGTGGAAAGTCGCTGCG 60.389 55.000 17.25 17.25 0.00 5.18
977 1373 2.943033 AGTTGCAGCGTCAAAAACTAGT 59.057 40.909 0.00 0.00 29.56 2.57
1089 5090 3.766691 GGGTGGCGCGTCTCCTTA 61.767 66.667 28.57 0.00 0.00 2.69
1372 5559 1.144057 GGAACTCCACGATGGCGAT 59.856 57.895 0.00 0.00 41.64 4.58
1378 5565 2.579201 CCGCTGGAACTCCACGAT 59.421 61.111 17.00 0.00 42.01 3.73
1463 5677 3.268965 GACGTGGACAGCTCGCTCA 62.269 63.158 0.00 0.00 0.00 4.26
1656 5877 9.974750 GAGAATAGTTTCTAAAACTGTACATGC 57.025 33.333 13.83 0.54 42.34 4.06
1702 5931 8.090250 AGCGTTTTTGACATTACATTAGTGTA 57.910 30.769 0.00 0.00 39.77 2.90
1703 5932 6.966021 AGCGTTTTTGACATTACATTAGTGT 58.034 32.000 0.00 0.00 42.39 3.55
1737 5966 7.393796 CCACTAGTAGTCTACTCCTTTTTCTCA 59.606 40.741 15.94 0.00 40.14 3.27
1738 5967 7.394077 ACCACTAGTAGTCTACTCCTTTTTCTC 59.606 40.741 15.94 0.00 40.14 2.87
1739 5968 7.240167 ACCACTAGTAGTCTACTCCTTTTTCT 58.760 38.462 15.94 0.00 40.14 2.52
1740 5969 7.465353 ACCACTAGTAGTCTACTCCTTTTTC 57.535 40.000 15.94 0.00 40.14 2.29
1742 5971 6.781507 ACAACCACTAGTAGTCTACTCCTTTT 59.218 38.462 15.94 2.57 40.14 2.27
1743 5972 6.208994 CACAACCACTAGTAGTCTACTCCTTT 59.791 42.308 15.94 1.92 40.14 3.11
1744 5973 5.711036 CACAACCACTAGTAGTCTACTCCTT 59.289 44.000 15.94 0.00 40.14 3.36
1908 6149 3.582714 TCAGTGCATCTGTGAGTACTG 57.417 47.619 0.00 0.00 43.97 2.74
1920 6161 2.422519 GGTCCATGGAGATTCAGTGCAT 60.423 50.000 16.81 0.00 0.00 3.96
1958 6199 5.481824 TCTTCTCCATGTTGTCATACTCTGT 59.518 40.000 0.00 0.00 32.47 3.41
1960 6201 6.611613 TTCTTCTCCATGTTGTCATACTCT 57.388 37.500 0.00 0.00 32.47 3.24
1961 6202 7.522374 GTTTTCTTCTCCATGTTGTCATACTC 58.478 38.462 0.00 0.00 32.47 2.59
1962 6203 6.147821 CGTTTTCTTCTCCATGTTGTCATACT 59.852 38.462 0.00 0.00 32.47 2.12
1963 6204 6.147164 TCGTTTTCTTCTCCATGTTGTCATAC 59.853 38.462 0.00 0.00 32.47 2.39
1991 6232 2.734606 CAACAGCGACGTCCTTTTCATA 59.265 45.455 10.58 0.00 0.00 2.15
2031 6272 3.257873 TGGCTGTCCAACAACCATTATTG 59.742 43.478 0.00 0.00 39.25 1.90
2059 6300 8.851145 TCTTCAGCGAGATATTTTAGACATACT 58.149 33.333 0.00 0.00 0.00 2.12
2060 6301 9.632807 ATCTTCAGCGAGATATTTTAGACATAC 57.367 33.333 0.00 0.00 34.68 2.39
2061 6302 9.847706 GATCTTCAGCGAGATATTTTAGACATA 57.152 33.333 0.00 0.00 36.54 2.29
2062 6303 8.363390 TGATCTTCAGCGAGATATTTTAGACAT 58.637 33.333 0.00 0.00 36.54 3.06
2063 6304 7.716612 TGATCTTCAGCGAGATATTTTAGACA 58.283 34.615 0.00 0.00 36.54 3.41
2064 6305 7.328249 CCTGATCTTCAGCGAGATATTTTAGAC 59.672 40.741 0.00 0.00 42.98 2.59
2065 6306 7.374272 CCTGATCTTCAGCGAGATATTTTAGA 58.626 38.462 0.00 0.00 42.98 2.10
2066 6307 6.589523 CCCTGATCTTCAGCGAGATATTTTAG 59.410 42.308 0.00 0.00 42.98 1.85
2067 6308 6.459066 CCCTGATCTTCAGCGAGATATTTTA 58.541 40.000 0.00 0.00 42.98 1.52
2068 6309 5.303971 CCCTGATCTTCAGCGAGATATTTT 58.696 41.667 0.00 0.00 42.98 1.82
2069 6310 4.802248 GCCCTGATCTTCAGCGAGATATTT 60.802 45.833 0.00 0.00 42.98 1.40
2070 6311 3.306641 GCCCTGATCTTCAGCGAGATATT 60.307 47.826 0.00 0.00 42.98 1.28
2071 6312 2.233431 GCCCTGATCTTCAGCGAGATAT 59.767 50.000 0.00 0.00 42.98 1.63
2072 6313 1.615883 GCCCTGATCTTCAGCGAGATA 59.384 52.381 0.00 0.00 42.98 1.98
2073 6314 0.392336 GCCCTGATCTTCAGCGAGAT 59.608 55.000 0.00 0.75 42.98 2.75
2074 6315 0.685785 AGCCCTGATCTTCAGCGAGA 60.686 55.000 0.00 0.00 42.98 4.04
2075 6316 1.000385 CTAGCCCTGATCTTCAGCGAG 60.000 57.143 0.00 0.00 42.98 5.03
2076 6317 1.035923 CTAGCCCTGATCTTCAGCGA 58.964 55.000 0.00 0.00 42.98 4.93
2077 6318 0.033228 CCTAGCCCTGATCTTCAGCG 59.967 60.000 0.00 0.00 42.98 5.18
2078 6319 1.344114 CTCCTAGCCCTGATCTTCAGC 59.656 57.143 0.00 0.00 42.98 4.26
2079 6320 1.344114 GCTCCTAGCCCTGATCTTCAG 59.656 57.143 0.00 0.00 43.91 3.02
2080 6321 1.343377 TGCTCCTAGCCCTGATCTTCA 60.343 52.381 0.00 0.00 41.51 3.02
2081 6322 1.344114 CTGCTCCTAGCCCTGATCTTC 59.656 57.143 0.00 0.00 41.51 2.87
2082 6323 1.422531 CTGCTCCTAGCCCTGATCTT 58.577 55.000 0.00 0.00 41.51 2.40
2083 6324 1.120795 GCTGCTCCTAGCCCTGATCT 61.121 60.000 0.00 0.00 41.51 2.75
2084 6325 1.370810 GCTGCTCCTAGCCCTGATC 59.629 63.158 0.00 0.00 41.51 2.92
2085 6326 1.383664 TGCTGCTCCTAGCCCTGAT 60.384 57.895 0.00 0.00 41.51 2.90
2086 6327 2.039462 TGCTGCTCCTAGCCCTGA 59.961 61.111 0.00 0.00 41.51 3.86
2087 6328 2.188994 GTGCTGCTCCTAGCCCTG 59.811 66.667 0.00 0.00 41.51 4.45
2088 6329 1.920325 TTGTGCTGCTCCTAGCCCT 60.920 57.895 0.00 0.00 41.51 5.19
2089 6330 1.746991 GTTGTGCTGCTCCTAGCCC 60.747 63.158 0.00 0.00 41.51 5.19
2090 6331 1.746991 GGTTGTGCTGCTCCTAGCC 60.747 63.158 0.00 0.00 41.51 3.93
2091 6332 2.103042 CGGTTGTGCTGCTCCTAGC 61.103 63.158 0.00 0.00 43.95 3.42
2092 6333 0.176680 ATCGGTTGTGCTGCTCCTAG 59.823 55.000 0.00 0.00 0.00 3.02
2093 6334 0.108186 CATCGGTTGTGCTGCTCCTA 60.108 55.000 0.00 0.00 0.00 2.94
2094 6335 1.376424 CATCGGTTGTGCTGCTCCT 60.376 57.895 0.00 0.00 0.00 3.69
2095 6336 1.364626 CTCATCGGTTGTGCTGCTCC 61.365 60.000 0.00 0.00 0.00 4.70
2096 6337 0.671781 ACTCATCGGTTGTGCTGCTC 60.672 55.000 0.00 0.00 0.00 4.26
2097 6338 0.608130 TACTCATCGGTTGTGCTGCT 59.392 50.000 0.00 0.00 0.00 4.24
2098 6339 1.438651 TTACTCATCGGTTGTGCTGC 58.561 50.000 0.00 0.00 0.00 5.25
2099 6340 4.406069 CAATTTACTCATCGGTTGTGCTG 58.594 43.478 0.00 0.00 0.00 4.41
2100 6341 3.119849 GCAATTTACTCATCGGTTGTGCT 60.120 43.478 0.00 0.00 0.00 4.40
2101 6342 3.119849 AGCAATTTACTCATCGGTTGTGC 60.120 43.478 0.00 0.00 0.00 4.57
2102 6343 4.154015 TGAGCAATTTACTCATCGGTTGTG 59.846 41.667 4.20 0.00 39.21 3.33
2103 6344 4.323417 TGAGCAATTTACTCATCGGTTGT 58.677 39.130 4.20 0.00 39.21 3.32
2104 6345 4.944962 TGAGCAATTTACTCATCGGTTG 57.055 40.909 4.20 0.00 39.21 3.77
2105 6346 5.957842 TTTGAGCAATTTACTCATCGGTT 57.042 34.783 8.40 0.00 43.40 4.44
2106 6347 5.335661 GGTTTTGAGCAATTTACTCATCGGT 60.336 40.000 8.40 0.00 43.40 4.69
2107 6348 5.095490 GGTTTTGAGCAATTTACTCATCGG 58.905 41.667 8.40 0.00 43.40 4.18
2108 6349 5.698832 TGGTTTTGAGCAATTTACTCATCG 58.301 37.500 8.40 0.00 43.40 3.84
2109 6350 7.315142 TGATGGTTTTGAGCAATTTACTCATC 58.685 34.615 8.40 3.98 43.40 2.92
2110 6351 7.230849 TGATGGTTTTGAGCAATTTACTCAT 57.769 32.000 8.40 0.00 43.40 2.90
2111 6352 6.647334 TGATGGTTTTGAGCAATTTACTCA 57.353 33.333 4.20 4.20 42.30 3.41
2112 6353 9.807649 AATATGATGGTTTTGAGCAATTTACTC 57.192 29.630 0.00 0.00 34.62 2.59
2115 6356 9.941325 ACAAATATGATGGTTTTGAGCAATTTA 57.059 25.926 1.98 0.00 35.03 1.40
2116 6357 8.723311 CACAAATATGATGGTTTTGAGCAATTT 58.277 29.630 1.98 0.00 35.03 1.82
2117 6358 7.879160 ACACAAATATGATGGTTTTGAGCAATT 59.121 29.630 1.98 0.00 35.03 2.32
2118 6359 7.388437 ACACAAATATGATGGTTTTGAGCAAT 58.612 30.769 1.98 0.00 35.03 3.56
2119 6360 6.757237 ACACAAATATGATGGTTTTGAGCAA 58.243 32.000 1.98 0.00 35.03 3.91
2120 6361 6.343716 ACACAAATATGATGGTTTTGAGCA 57.656 33.333 1.98 0.00 35.03 4.26
2121 6362 7.656707 AAACACAAATATGATGGTTTTGAGC 57.343 32.000 1.98 0.00 35.03 4.26
2146 6387 8.911662 GCAACAACGATGATAACAAAGTTTTAT 58.088 29.630 0.00 0.00 31.27 1.40
2147 6388 7.380065 GGCAACAACGATGATAACAAAGTTTTA 59.620 33.333 0.00 0.00 31.27 1.52
2148 6389 6.200097 GGCAACAACGATGATAACAAAGTTTT 59.800 34.615 0.00 0.00 31.27 2.43
2149 6390 5.689961 GGCAACAACGATGATAACAAAGTTT 59.310 36.000 0.00 0.00 31.27 2.66
2150 6391 5.219633 GGCAACAACGATGATAACAAAGTT 58.780 37.500 0.00 0.00 32.85 2.66
2151 6392 4.794169 GGCAACAACGATGATAACAAAGT 58.206 39.130 0.00 0.00 0.00 2.66
2176 6417 6.715347 AAGCAGTGGTCTTCTGTTATTTTT 57.285 33.333 0.00 0.00 35.60 1.94
2177 6418 6.715347 AAAGCAGTGGTCTTCTGTTATTTT 57.285 33.333 0.00 0.00 35.60 1.82
2178 6419 6.507023 CAAAAGCAGTGGTCTTCTGTTATTT 58.493 36.000 0.00 0.00 35.60 1.40
2179 6420 5.507985 GCAAAAGCAGTGGTCTTCTGTTATT 60.508 40.000 0.00 0.00 35.60 1.40
2180 6421 4.022849 GCAAAAGCAGTGGTCTTCTGTTAT 60.023 41.667 0.00 0.00 35.60 1.89
2181 6422 3.315191 GCAAAAGCAGTGGTCTTCTGTTA 59.685 43.478 0.00 0.00 35.60 2.41
2182 6423 2.099756 GCAAAAGCAGTGGTCTTCTGTT 59.900 45.455 0.00 0.00 35.60 3.16
2183 6424 1.678101 GCAAAAGCAGTGGTCTTCTGT 59.322 47.619 0.00 0.00 35.60 3.41
2184 6425 1.334419 CGCAAAAGCAGTGGTCTTCTG 60.334 52.381 0.00 0.00 36.18 3.02
2185 6426 0.947244 CGCAAAAGCAGTGGTCTTCT 59.053 50.000 0.00 0.00 0.00 2.85
2186 6427 0.661483 GCGCAAAAGCAGTGGTCTTC 60.661 55.000 0.30 0.00 37.05 2.87
2187 6428 1.360192 GCGCAAAAGCAGTGGTCTT 59.640 52.632 0.30 0.00 37.05 3.01
2188 6429 2.555547 GGCGCAAAAGCAGTGGTCT 61.556 57.895 10.83 0.00 39.27 3.85
2189 6430 2.050077 GGCGCAAAAGCAGTGGTC 60.050 61.111 10.83 0.00 39.27 4.02
2190 6431 2.354074 CTTGGCGCAAAAGCAGTGGT 62.354 55.000 10.83 0.00 39.27 4.16
2191 6432 1.662446 CTTGGCGCAAAAGCAGTGG 60.662 57.895 10.83 0.00 39.27 4.00
2192 6433 1.066257 ACTTGGCGCAAAAGCAGTG 59.934 52.632 18.79 0.19 39.27 3.66
2193 6434 1.066257 CACTTGGCGCAAAAGCAGT 59.934 52.632 18.79 1.58 39.27 4.40
2194 6435 0.248990 TTCACTTGGCGCAAAAGCAG 60.249 50.000 18.79 13.05 39.27 4.24
2195 6436 0.388659 ATTCACTTGGCGCAAAAGCA 59.611 45.000 18.79 0.61 39.27 3.91
2196 6437 2.346099 TATTCACTTGGCGCAAAAGC 57.654 45.000 18.79 0.00 0.00 3.51
2197 6438 3.637432 TGTTATTCACTTGGCGCAAAAG 58.363 40.909 17.64 17.64 0.00 2.27
2198 6439 3.717400 TGTTATTCACTTGGCGCAAAA 57.283 38.095 10.83 1.45 0.00 2.44
2199 6440 3.717400 TTGTTATTCACTTGGCGCAAA 57.283 38.095 10.83 2.19 0.00 3.68
2200 6441 3.717400 TTTGTTATTCACTTGGCGCAA 57.283 38.095 10.83 0.00 0.00 4.85
2201 6442 3.254411 TGATTTGTTATTCACTTGGCGCA 59.746 39.130 10.83 0.00 0.00 6.09
2202 6443 3.608073 GTGATTTGTTATTCACTTGGCGC 59.392 43.478 0.00 0.00 39.30 6.53
2203 6444 4.616802 GTGTGATTTGTTATTCACTTGGCG 59.383 41.667 4.86 0.00 42.17 5.69
2204 6445 5.772521 AGTGTGATTTGTTATTCACTTGGC 58.227 37.500 4.86 0.00 42.17 4.52
2205 6446 9.912634 AATAAGTGTGATTTGTTATTCACTTGG 57.087 29.630 15.46 0.00 43.04 3.61
2207 6448 9.825972 CGAATAAGTGTGATTTGTTATTCACTT 57.174 29.630 11.88 11.88 44.51 3.16
2208 6449 8.450964 CCGAATAAGTGTGATTTGTTATTCACT 58.549 33.333 11.98 0.00 42.17 3.41
2209 6450 8.447833 TCCGAATAAGTGTGATTTGTTATTCAC 58.552 33.333 11.98 0.00 39.96 3.18
2210 6451 8.554835 TCCGAATAAGTGTGATTTGTTATTCA 57.445 30.769 11.98 0.00 39.96 2.57
2211 6452 9.274065 GTTCCGAATAAGTGTGATTTGTTATTC 57.726 33.333 0.00 0.00 38.03 1.75
2212 6453 9.010029 AGTTCCGAATAAGTGTGATTTGTTATT 57.990 29.630 0.00 0.00 0.00 1.40
2213 6454 8.450964 CAGTTCCGAATAAGTGTGATTTGTTAT 58.549 33.333 0.00 0.00 0.00 1.89
2214 6455 7.658167 TCAGTTCCGAATAAGTGTGATTTGTTA 59.342 33.333 0.00 0.00 32.63 2.41
2215 6456 6.485313 TCAGTTCCGAATAAGTGTGATTTGTT 59.515 34.615 0.00 0.00 32.63 2.83
2216 6457 5.995282 TCAGTTCCGAATAAGTGTGATTTGT 59.005 36.000 0.00 0.00 32.63 2.83
2217 6458 6.147821 ACTCAGTTCCGAATAAGTGTGATTTG 59.852 38.462 0.00 0.00 32.63 2.32
2218 6459 6.231211 ACTCAGTTCCGAATAAGTGTGATTT 58.769 36.000 0.00 0.00 32.63 2.17
2219 6460 5.794894 ACTCAGTTCCGAATAAGTGTGATT 58.205 37.500 0.00 0.00 32.63 2.57
2220 6461 5.407407 ACTCAGTTCCGAATAAGTGTGAT 57.593 39.130 0.00 0.00 32.63 3.06
2221 6462 4.615223 CGACTCAGTTCCGAATAAGTGTGA 60.615 45.833 0.00 0.00 32.63 3.58
2222 6463 3.608506 CGACTCAGTTCCGAATAAGTGTG 59.391 47.826 0.00 0.00 32.63 3.82
2223 6464 3.834610 CGACTCAGTTCCGAATAAGTGT 58.165 45.455 0.00 0.00 32.63 3.55
2224 6465 2.599082 GCGACTCAGTTCCGAATAAGTG 59.401 50.000 0.00 0.00 0.00 3.16
2225 6466 2.230508 TGCGACTCAGTTCCGAATAAGT 59.769 45.455 0.00 0.00 0.00 2.24
2226 6467 2.876091 TGCGACTCAGTTCCGAATAAG 58.124 47.619 0.00 0.00 0.00 1.73
2227 6468 3.130516 AGATGCGACTCAGTTCCGAATAA 59.869 43.478 0.00 0.00 0.00 1.40
2228 6469 2.688446 AGATGCGACTCAGTTCCGAATA 59.312 45.455 0.00 0.00 0.00 1.75
2229 6470 1.478510 AGATGCGACTCAGTTCCGAAT 59.521 47.619 0.00 0.00 0.00 3.34
2230 6471 0.888619 AGATGCGACTCAGTTCCGAA 59.111 50.000 0.00 0.00 0.00 4.30
2231 6472 1.746470 TAGATGCGACTCAGTTCCGA 58.254 50.000 0.00 0.00 0.00 4.55
2232 6473 2.186076 GTTAGATGCGACTCAGTTCCG 58.814 52.381 0.00 0.00 0.00 4.30
2233 6474 3.182967 CTGTTAGATGCGACTCAGTTCC 58.817 50.000 0.00 0.00 0.00 3.62
2234 6475 2.600867 GCTGTTAGATGCGACTCAGTTC 59.399 50.000 0.00 0.00 0.00 3.01
2235 6476 2.611518 GCTGTTAGATGCGACTCAGTT 58.388 47.619 0.00 0.00 0.00 3.16
2236 6477 2.285827 GCTGTTAGATGCGACTCAGT 57.714 50.000 0.00 0.00 0.00 3.41
2244 6485 1.661112 GTCAGTTCCGCTGTTAGATGC 59.339 52.381 0.00 0.00 45.23 3.91
2245 6486 2.926200 CAGTCAGTTCCGCTGTTAGATG 59.074 50.000 0.00 0.00 45.23 2.90
2246 6487 2.826128 TCAGTCAGTTCCGCTGTTAGAT 59.174 45.455 0.00 0.00 45.23 1.98
2247 6488 2.235891 TCAGTCAGTTCCGCTGTTAGA 58.764 47.619 0.00 0.00 45.23 2.10
2248 6489 2.724977 TCAGTCAGTTCCGCTGTTAG 57.275 50.000 0.00 0.00 45.23 2.34
2249 6490 4.441495 CCATATCAGTCAGTTCCGCTGTTA 60.441 45.833 0.00 0.00 45.23 2.41
2250 6491 3.525537 CATATCAGTCAGTTCCGCTGTT 58.474 45.455 0.00 0.00 45.23 3.16
2251 6492 2.159043 CCATATCAGTCAGTTCCGCTGT 60.159 50.000 0.00 0.00 45.23 4.40
2252 6493 2.477825 CCATATCAGTCAGTTCCGCTG 58.522 52.381 0.00 0.00 46.34 5.18
2253 6494 1.202580 GCCATATCAGTCAGTTCCGCT 60.203 52.381 0.00 0.00 0.00 5.52
2254 6495 1.221414 GCCATATCAGTCAGTTCCGC 58.779 55.000 0.00 0.00 0.00 5.54
2255 6496 1.541233 GGGCCATATCAGTCAGTTCCG 60.541 57.143 4.39 0.00 0.00 4.30
2256 6497 1.490490 TGGGCCATATCAGTCAGTTCC 59.510 52.381 0.00 0.00 0.00 3.62
2257 6498 2.092968 TGTGGGCCATATCAGTCAGTTC 60.093 50.000 10.70 0.00 0.00 3.01
2258 6499 1.915489 TGTGGGCCATATCAGTCAGTT 59.085 47.619 10.70 0.00 0.00 3.16
2259 6500 1.210478 GTGTGGGCCATATCAGTCAGT 59.790 52.381 10.70 0.00 0.00 3.41
2260 6501 1.807755 CGTGTGGGCCATATCAGTCAG 60.808 57.143 10.70 0.00 0.00 3.51
2261 6502 0.177836 CGTGTGGGCCATATCAGTCA 59.822 55.000 10.70 0.00 0.00 3.41
2262 6503 0.178068 ACGTGTGGGCCATATCAGTC 59.822 55.000 10.70 0.00 0.00 3.51
2263 6504 0.178068 GACGTGTGGGCCATATCAGT 59.822 55.000 10.70 9.15 0.00 3.41
2264 6505 0.177836 TGACGTGTGGGCCATATCAG 59.822 55.000 10.70 5.64 0.00 2.90
2265 6506 0.177836 CTGACGTGTGGGCCATATCA 59.822 55.000 10.70 8.03 0.00 2.15
2266 6507 0.532862 CCTGACGTGTGGGCCATATC 60.533 60.000 10.70 2.76 0.00 1.63
2267 6508 1.526887 CCTGACGTGTGGGCCATAT 59.473 57.895 10.70 0.00 0.00 1.78
2268 6509 2.665089 CCCTGACGTGTGGGCCATA 61.665 63.158 10.70 3.21 36.61 2.74
2269 6510 4.033776 CCCTGACGTGTGGGCCAT 62.034 66.667 10.70 0.00 36.61 4.40
2275 6516 1.470979 GCTATACCACCCTGACGTGTG 60.471 57.143 0.00 0.00 31.47 3.82
2276 6517 0.822164 GCTATACCACCCTGACGTGT 59.178 55.000 0.00 0.00 31.47 4.49
2277 6518 0.821517 TGCTATACCACCCTGACGTG 59.178 55.000 0.00 0.00 0.00 4.49
2278 6519 1.112113 CTGCTATACCACCCTGACGT 58.888 55.000 0.00 0.00 0.00 4.34
2279 6520 0.389391 CCTGCTATACCACCCTGACG 59.611 60.000 0.00 0.00 0.00 4.35
2280 6521 1.497161 ACCTGCTATACCACCCTGAC 58.503 55.000 0.00 0.00 0.00 3.51
2281 6522 3.630625 ATACCTGCTATACCACCCTGA 57.369 47.619 0.00 0.00 0.00 3.86
2282 6523 4.157246 TGTATACCTGCTATACCACCCTG 58.843 47.826 0.00 0.00 37.48 4.45
2283 6524 4.480777 TGTATACCTGCTATACCACCCT 57.519 45.455 0.00 0.00 37.48 4.34
2284 6525 4.081087 CCATGTATACCTGCTATACCACCC 60.081 50.000 0.00 0.00 37.48 4.61
2285 6526 4.775780 TCCATGTATACCTGCTATACCACC 59.224 45.833 0.00 0.00 37.48 4.61
2286 6527 5.480772 ACTCCATGTATACCTGCTATACCAC 59.519 44.000 0.00 0.00 37.48 4.16
2287 6528 5.651303 ACTCCATGTATACCTGCTATACCA 58.349 41.667 0.00 0.00 37.48 3.25
2288 6529 7.684670 GCATACTCCATGTATACCTGCTATACC 60.685 44.444 0.00 0.00 39.66 2.73
2289 6530 7.068839 AGCATACTCCATGTATACCTGCTATAC 59.931 40.741 0.00 0.00 40.14 1.47
2290 6531 7.126061 AGCATACTCCATGTATACCTGCTATA 58.874 38.462 0.00 0.00 40.14 1.31
2291 6532 5.960811 AGCATACTCCATGTATACCTGCTAT 59.039 40.000 0.00 0.00 40.14 2.97
2292 6533 5.333581 AGCATACTCCATGTATACCTGCTA 58.666 41.667 0.00 0.00 40.14 3.49
2293 6534 4.163427 AGCATACTCCATGTATACCTGCT 58.837 43.478 0.00 0.00 39.66 4.24
2294 6535 4.221703 AGAGCATACTCCATGTATACCTGC 59.778 45.833 0.00 0.00 44.65 4.85
2295 6536 5.478332 TCAGAGCATACTCCATGTATACCTG 59.522 44.000 0.00 0.41 44.65 4.00
2296 6537 5.645201 TCAGAGCATACTCCATGTATACCT 58.355 41.667 0.00 0.00 44.65 3.08
2297 6538 5.105554 CCTCAGAGCATACTCCATGTATACC 60.106 48.000 0.00 0.00 44.65 2.73
2298 6539 5.478679 ACCTCAGAGCATACTCCATGTATAC 59.521 44.000 0.00 0.00 44.65 1.47
2299 6540 5.478332 CACCTCAGAGCATACTCCATGTATA 59.522 44.000 0.00 0.00 44.65 1.47
2300 6541 4.282957 CACCTCAGAGCATACTCCATGTAT 59.717 45.833 0.00 0.00 44.65 2.29
2301 6542 3.638627 CACCTCAGAGCATACTCCATGTA 59.361 47.826 0.00 0.00 44.65 2.29
2302 6543 2.433604 CACCTCAGAGCATACTCCATGT 59.566 50.000 0.00 0.00 44.65 3.21
2303 6544 2.224233 CCACCTCAGAGCATACTCCATG 60.224 54.545 0.00 0.00 44.65 3.66
2304 6545 2.045524 CCACCTCAGAGCATACTCCAT 58.954 52.381 0.00 0.00 44.65 3.41
2305 6546 1.007118 TCCACCTCAGAGCATACTCCA 59.993 52.381 0.00 0.00 44.65 3.86
2306 6547 1.686052 CTCCACCTCAGAGCATACTCC 59.314 57.143 0.00 0.00 44.65 3.85
2307 6548 2.622942 CTCTCCACCTCAGAGCATACTC 59.377 54.545 0.00 0.00 43.82 2.59
2308 6549 2.665165 CTCTCCACCTCAGAGCATACT 58.335 52.381 0.00 0.00 31.27 2.12
2309 6550 1.686052 CCTCTCCACCTCAGAGCATAC 59.314 57.143 0.00 0.00 36.77 2.39
2310 6551 1.412217 CCCTCTCCACCTCAGAGCATA 60.412 57.143 0.00 0.00 36.77 3.14
2311 6552 0.690411 CCCTCTCCACCTCAGAGCAT 60.690 60.000 0.00 0.00 36.77 3.79
2312 6553 1.305633 CCCTCTCCACCTCAGAGCA 60.306 63.158 0.00 0.00 36.77 4.26
2313 6554 1.000993 TCCCTCTCCACCTCAGAGC 59.999 63.158 0.00 0.00 36.77 4.09
2314 6555 1.042559 GCTCCCTCTCCACCTCAGAG 61.043 65.000 0.00 0.00 37.70 3.35
2315 6556 1.000993 GCTCCCTCTCCACCTCAGA 59.999 63.158 0.00 0.00 0.00 3.27
2316 6557 2.063378 GGCTCCCTCTCCACCTCAG 61.063 68.421 0.00 0.00 0.00 3.35
2317 6558 2.039624 GGCTCCCTCTCCACCTCA 59.960 66.667 0.00 0.00 0.00 3.86
2318 6559 2.766229 GGGCTCCCTCTCCACCTC 60.766 72.222 0.00 0.00 0.00 3.85
2319 6560 3.615811 TGGGCTCCCTCTCCACCT 61.616 66.667 6.50 0.00 36.94 4.00
2320 6561 3.403558 GTGGGCTCCCTCTCCACC 61.404 72.222 6.50 0.00 43.65 4.61
2322 6563 3.615811 AGGTGGGCTCCCTCTCCA 61.616 66.667 6.50 0.00 36.94 3.86
2323 6564 3.086600 CAGGTGGGCTCCCTCTCC 61.087 72.222 6.50 6.43 36.94 3.71
2324 6565 2.284995 ACAGGTGGGCTCCCTCTC 60.285 66.667 6.50 0.00 36.94 3.20
2325 6566 2.284995 GACAGGTGGGCTCCCTCT 60.285 66.667 6.50 1.38 36.94 3.69
2326 6567 2.607750 TGACAGGTGGGCTCCCTC 60.608 66.667 6.50 2.34 36.94 4.30
2327 6568 2.608988 CTGACAGGTGGGCTCCCT 60.609 66.667 6.50 0.00 36.94 4.20
2328 6569 4.416738 GCTGACAGGTGGGCTCCC 62.417 72.222 4.26 0.00 0.00 4.30
2329 6570 3.322318 GAGCTGACAGGTGGGCTCC 62.322 68.421 12.82 0.00 43.51 4.70
2330 6571 2.267324 GAGCTGACAGGTGGGCTC 59.733 66.667 12.82 4.83 43.07 4.70
2331 6572 3.325753 GGAGCTGACAGGTGGGCT 61.326 66.667 12.82 0.00 37.77 5.19
2332 6573 4.416738 GGGAGCTGACAGGTGGGC 62.417 72.222 12.82 0.00 0.00 5.36
2333 6574 2.608988 AGGGAGCTGACAGGTGGG 60.609 66.667 12.82 0.00 0.00 4.61
2334 6575 1.611851 AGAGGGAGCTGACAGGTGG 60.612 63.158 12.82 0.00 0.00 4.61
2335 6576 1.896694 GAGAGGGAGCTGACAGGTG 59.103 63.158 12.82 0.00 0.00 4.00
2336 6577 1.680651 CGAGAGGGAGCTGACAGGT 60.681 63.158 6.92 6.92 0.00 4.00
2337 6578 3.074999 GCGAGAGGGAGCTGACAGG 62.075 68.421 4.26 0.00 0.00 4.00
2338 6579 2.493973 GCGAGAGGGAGCTGACAG 59.506 66.667 0.00 0.00 0.00 3.51
2339 6580 3.071206 GGCGAGAGGGAGCTGACA 61.071 66.667 0.00 0.00 0.00 3.58
2340 6581 3.844090 GGGCGAGAGGGAGCTGAC 61.844 72.222 0.00 0.00 0.00 3.51
2341 6582 3.905153 TTGGGCGAGAGGGAGCTGA 62.905 63.158 0.00 0.00 0.00 4.26
2342 6583 2.262774 ATTTGGGCGAGAGGGAGCTG 62.263 60.000 0.00 0.00 0.00 4.24
2343 6584 1.566298 AATTTGGGCGAGAGGGAGCT 61.566 55.000 0.00 0.00 0.00 4.09
2344 6585 1.077429 AATTTGGGCGAGAGGGAGC 60.077 57.895 0.00 0.00 0.00 4.70
2345 6586 0.811616 CGAATTTGGGCGAGAGGGAG 60.812 60.000 0.00 0.00 0.00 4.30
2346 6587 1.220749 CGAATTTGGGCGAGAGGGA 59.779 57.895 0.00 0.00 0.00 4.20
2347 6588 1.078426 ACGAATTTGGGCGAGAGGG 60.078 57.895 0.00 0.00 0.00 4.30
2348 6589 1.982073 GCACGAATTTGGGCGAGAGG 61.982 60.000 3.63 0.00 0.00 3.69
2349 6590 1.425428 GCACGAATTTGGGCGAGAG 59.575 57.895 3.63 0.00 0.00 3.20
2350 6591 2.038269 GGCACGAATTTGGGCGAGA 61.038 57.895 13.83 0.00 0.00 4.04
2351 6592 2.485122 GGCACGAATTTGGGCGAG 59.515 61.111 13.83 0.00 0.00 5.03
2366 6607 4.759096 GTGTGGATGCGTTGCGGC 62.759 66.667 0.00 0.00 0.00 6.53
2367 6608 3.027170 GAGTGTGGATGCGTTGCGG 62.027 63.158 0.00 0.00 0.00 5.69
2368 6609 2.476051 GAGTGTGGATGCGTTGCG 59.524 61.111 0.00 0.00 0.00 4.85
2369 6610 2.476051 CGAGTGTGGATGCGTTGC 59.524 61.111 0.00 0.00 0.00 4.17
2370 6611 2.476051 GCGAGTGTGGATGCGTTG 59.524 61.111 0.00 0.00 0.00 4.10
2371 6612 2.742372 GGCGAGTGTGGATGCGTT 60.742 61.111 0.00 0.00 0.00 4.84
2375 6616 4.758251 TGCCGGCGAGTGTGGATG 62.758 66.667 23.90 0.00 0.00 3.51
2376 6617 3.958147 CTTGCCGGCGAGTGTGGAT 62.958 63.158 32.28 0.00 0.00 3.41
2377 6618 4.680237 CTTGCCGGCGAGTGTGGA 62.680 66.667 32.28 4.97 0.00 4.02
2390 6631 4.818835 GCTACAAGGCGCGCTTGC 62.819 66.667 32.29 19.30 35.39 4.01
2391 6632 3.088500 GAGCTACAAGGCGCGCTTG 62.089 63.158 32.29 30.31 37.29 4.01
2392 6633 2.815647 GAGCTACAAGGCGCGCTT 60.816 61.111 32.29 23.01 37.29 4.68
2393 6634 4.821589 GGAGCTACAAGGCGCGCT 62.822 66.667 32.29 14.07 37.29 5.92
2418 6659 2.897350 GGAAAGGGATGGCGCGAG 60.897 66.667 12.10 0.00 0.00 5.03
2419 6660 4.483243 GGGAAAGGGATGGCGCGA 62.483 66.667 12.10 0.00 0.00 5.87
2452 6693 4.436998 GACCGACGGAGCAGGTGG 62.437 72.222 23.38 0.00 40.54 4.61
2453 6694 4.436998 GGACCGACGGAGCAGGTG 62.437 72.222 23.38 0.00 40.54 4.00
2456 6697 4.180946 CTCGGACCGACGGAGCAG 62.181 72.222 23.38 12.68 38.67 4.24
2458 6699 4.176851 GACTCGGACCGACGGAGC 62.177 72.222 23.38 11.92 45.71 4.70
2459 6700 1.979831 GAAGACTCGGACCGACGGAG 61.980 65.000 23.38 10.02 46.70 4.63
2460 6701 2.033141 AAGACTCGGACCGACGGA 59.967 61.111 23.38 0.00 0.00 4.69
2461 6702 1.979831 GAGAAGACTCGGACCGACGG 61.980 65.000 13.88 13.61 33.32 4.79
2462 6703 1.424635 GAGAAGACTCGGACCGACG 59.575 63.158 13.88 11.85 33.32 5.12
2463 6704 0.959372 TGGAGAAGACTCGGACCGAC 60.959 60.000 13.88 4.18 43.44 4.79
2464 6705 0.677098 CTGGAGAAGACTCGGACCGA 60.677 60.000 17.28 17.28 43.44 4.69
2465 6706 1.803943 CTGGAGAAGACTCGGACCG 59.196 63.158 7.84 7.84 43.44 4.79
2466 6707 1.513622 GCTGGAGAAGACTCGGACC 59.486 63.158 0.00 0.00 43.44 4.46
2467 6708 1.137825 CGCTGGAGAAGACTCGGAC 59.862 63.158 0.00 0.00 43.44 4.79
2468 6709 1.002502 TCGCTGGAGAAGACTCGGA 60.003 57.895 0.00 0.00 43.44 4.55
2469 6710 1.137825 GTCGCTGGAGAAGACTCGG 59.862 63.158 0.00 0.00 43.44 4.63
2470 6711 1.226156 CGTCGCTGGAGAAGACTCG 60.226 63.158 0.00 0.00 43.44 4.18
2471 6712 0.455295 CACGTCGCTGGAGAAGACTC 60.455 60.000 0.00 0.00 41.94 3.36
2472 6713 1.581954 CACGTCGCTGGAGAAGACT 59.418 57.895 0.00 0.00 33.10 3.24
2473 6714 2.089349 GCACGTCGCTGGAGAAGAC 61.089 63.158 0.00 0.00 37.77 3.01
2474 6715 2.258591 GCACGTCGCTGGAGAAGA 59.741 61.111 0.00 0.00 37.77 2.87
2475 6716 2.811317 GGCACGTCGCTGGAGAAG 60.811 66.667 9.31 0.00 41.91 2.85
2476 6717 4.373116 GGGCACGTCGCTGGAGAA 62.373 66.667 9.31 0.00 41.91 2.87
2518 6759 4.200283 GAGGCAGAGCTCGTCGGG 62.200 72.222 8.37 0.00 0.00 5.14
2519 6760 4.200283 GGAGGCAGAGCTCGTCGG 62.200 72.222 8.37 0.62 0.00 4.79
2520 6761 3.119709 GAGGAGGCAGAGCTCGTCG 62.120 68.421 8.37 2.08 0.00 5.12
2521 6762 2.804856 GAGGAGGCAGAGCTCGTC 59.195 66.667 8.37 5.02 0.00 4.20
2522 6763 3.137459 CGAGGAGGCAGAGCTCGT 61.137 66.667 8.37 0.00 33.50 4.18
2523 6764 3.119709 GACGAGGAGGCAGAGCTCG 62.120 68.421 8.37 0.00 42.41 5.03
2524 6765 1.752694 AGACGAGGAGGCAGAGCTC 60.753 63.158 5.27 5.27 0.00 4.09
2525 6766 2.051518 CAGACGAGGAGGCAGAGCT 61.052 63.158 0.00 0.00 0.00 4.09
2526 6767 2.493973 CAGACGAGGAGGCAGAGC 59.506 66.667 0.00 0.00 0.00 4.09
2527 6768 2.493973 GCAGACGAGGAGGCAGAG 59.506 66.667 0.00 0.00 0.00 3.35
2528 6769 3.443925 CGCAGACGAGGAGGCAGA 61.444 66.667 0.00 0.00 43.93 4.26
2531 6772 4.521062 ATGCGCAGACGAGGAGGC 62.521 66.667 18.32 0.00 43.93 4.70
2532 6773 2.584418 CATGCGCAGACGAGGAGG 60.584 66.667 18.32 0.00 43.93 4.30
2533 6774 2.584418 CCATGCGCAGACGAGGAG 60.584 66.667 18.32 0.00 43.93 3.69
2534 6775 4.819761 GCCATGCGCAGACGAGGA 62.820 66.667 18.32 0.00 43.93 3.71
2545 6786 2.280457 GGGACTAGCTCGCCATGC 60.280 66.667 0.00 0.00 0.00 4.06
2550 6791 1.454111 TGAGAGGGGACTAGCTCGC 60.454 63.158 0.00 0.00 44.43 5.03
2551 6792 1.104577 GGTGAGAGGGGACTAGCTCG 61.105 65.000 0.00 0.00 44.43 5.03
2552 6793 0.033011 TGGTGAGAGGGGACTAGCTC 60.033 60.000 0.00 0.00 44.43 4.09
2553 6794 0.032615 CTGGTGAGAGGGGACTAGCT 60.033 60.000 0.00 0.00 44.43 3.32
2554 6795 1.045911 CCTGGTGAGAGGGGACTAGC 61.046 65.000 0.00 0.00 44.43 3.42
2555 6796 3.215671 CCTGGTGAGAGGGGACTAG 57.784 63.158 0.00 0.00 44.43 2.57
2571 6812 4.715130 TAGTGAGTGGGGCGCCCT 62.715 66.667 42.70 26.22 45.70 5.19
2572 6813 4.162690 CTAGTGAGTGGGGCGCCC 62.163 72.222 38.57 38.57 45.71 6.13
2573 6814 4.840005 GCTAGTGAGTGGGGCGCC 62.840 72.222 21.18 21.18 0.00 6.53
2574 6815 4.082523 TGCTAGTGAGTGGGGCGC 62.083 66.667 0.00 0.00 0.00 6.53
2575 6816 2.125512 GTGCTAGTGAGTGGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
2576 6817 2.125512 CGTGCTAGTGAGTGGGGC 60.126 66.667 0.00 0.00 0.00 5.80
2577 6818 0.389948 GAACGTGCTAGTGAGTGGGG 60.390 60.000 0.00 0.00 0.00 4.96
2578 6819 0.603569 AGAACGTGCTAGTGAGTGGG 59.396 55.000 0.00 0.00 0.00 4.61
2579 6820 1.729472 CGAGAACGTGCTAGTGAGTGG 60.729 57.143 0.00 0.00 34.56 4.00
2580 6821 1.607713 CGAGAACGTGCTAGTGAGTG 58.392 55.000 0.00 0.00 34.56 3.51
2581 6822 0.522180 CCGAGAACGTGCTAGTGAGT 59.478 55.000 0.00 0.00 37.88 3.41
2582 6823 0.798771 GCCGAGAACGTGCTAGTGAG 60.799 60.000 0.00 0.00 37.88 3.51
2583 6824 1.211969 GCCGAGAACGTGCTAGTGA 59.788 57.895 0.00 0.00 37.88 3.41
2584 6825 2.152699 CGCCGAGAACGTGCTAGTG 61.153 63.158 0.00 0.00 37.88 2.74
2585 6826 2.178521 CGCCGAGAACGTGCTAGT 59.821 61.111 0.00 0.00 37.88 2.57
2586 6827 2.579787 CCGCCGAGAACGTGCTAG 60.580 66.667 0.00 0.00 37.88 3.42
2587 6828 3.367743 ACCGCCGAGAACGTGCTA 61.368 61.111 0.00 0.00 37.88 3.49
2590 6831 2.355363 TTCACCGCCGAGAACGTG 60.355 61.111 0.00 0.00 37.88 4.49
2591 6832 2.049433 CTTCACCGCCGAGAACGT 60.049 61.111 0.00 0.00 37.88 3.99
2592 6833 1.801913 CTCTTCACCGCCGAGAACG 60.802 63.158 0.00 0.00 39.43 3.95
2593 6834 2.095252 GCTCTTCACCGCCGAGAAC 61.095 63.158 0.00 0.00 0.00 3.01
2594 6835 2.261671 GCTCTTCACCGCCGAGAA 59.738 61.111 0.00 0.00 0.00 2.87
2595 6836 3.760035 GGCTCTTCACCGCCGAGA 61.760 66.667 0.00 0.00 36.45 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.