Multiple sequence alignment - TraesCS5B01G311300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G311300 chr5B 100.000 2873 0 0 1 2873 493087718 493084846 0.000000e+00 5306.0
1 TraesCS5B01G311300 chr5B 87.356 609 70 4 980 1584 492782478 492783083 0.000000e+00 691.0
2 TraesCS5B01G311300 chr5B 89.083 458 49 1 963 1419 493140515 493140972 4.150000e-158 568.0
3 TraesCS5B01G311300 chr5B 83.302 539 79 10 79 611 123208780 123209313 1.200000e-133 486.0
4 TraesCS5B01G311300 chr5B 82.705 451 59 13 1424 1867 492782877 492783315 1.620000e-102 383.0
5 TraesCS5B01G311300 chr5B 85.088 228 21 6 1379 1602 493086295 493086077 1.340000e-53 220.0
6 TraesCS5B01G311300 chr5B 85.088 228 21 6 1424 1642 493086340 493086117 1.340000e-53 220.0
7 TraesCS5B01G311300 chr5B 79.693 261 43 8 1379 1635 82243199 82242945 2.270000e-41 180.0
8 TraesCS5B01G311300 chr5B 78.641 206 34 6 1685 1880 493124887 493124682 8.360000e-26 128.0
9 TraesCS5B01G311300 chr5A 91.383 998 57 15 611 1595 522223348 522224329 0.000000e+00 1339.0
10 TraesCS5B01G311300 chr5A 89.275 662 59 4 2146 2801 522224661 522225316 0.000000e+00 819.0
11 TraesCS5B01G311300 chr5A 86.222 675 75 14 920 1584 522082662 522083328 0.000000e+00 715.0
12 TraesCS5B01G311300 chr5A 92.781 471 21 6 1424 1881 522224109 522224579 0.000000e+00 669.0
13 TraesCS5B01G311300 chr5A 89.339 469 47 2 963 1428 522425201 522425669 1.150000e-163 586.0
14 TraesCS5B01G311300 chr5A 82.560 539 81 11 79 611 578554220 578554751 2.020000e-126 462.0
15 TraesCS5B01G311300 chr5A 82.051 468 60 17 1424 1880 522083119 522083573 7.510000e-101 377.0
16 TraesCS5B01G311300 chr5A 85.062 241 26 5 1649 1879 522425690 522425930 1.330000e-58 237.0
17 TraesCS5B01G311300 chr5A 90.476 126 8 4 1873 1995 521392572 521392448 2.290000e-36 163.0
18 TraesCS5B01G311300 chr5A 80.303 198 32 5 1685 1875 522357145 522356948 2.980000e-30 143.0
19 TraesCS5B01G311300 chr5A 90.588 85 2 4 2037 2116 522224583 522224666 1.090000e-19 108.0
20 TraesCS5B01G311300 chr5A 80.000 95 13 3 1549 1637 522224109 522224203 6.640000e-07 65.8
21 TraesCS5B01G311300 chr5D 93.707 874 50 4 725 1594 410620056 410620928 0.000000e+00 1304.0
22 TraesCS5B01G311300 chr5D 86.207 667 77 11 927 1584 410490736 410491396 0.000000e+00 708.0
23 TraesCS5B01G311300 chr5D 92.797 472 19 4 1424 1881 410620709 410621179 0.000000e+00 669.0
24 TraesCS5B01G311300 chr5D 90.289 381 37 0 1025 1405 410539180 410539560 1.540000e-137 499.0
25 TraesCS5B01G311300 chr5D 83.445 447 56 12 1424 1865 410491190 410491623 1.600000e-107 399.0
26 TraesCS5B01G311300 chr5D 84.647 241 27 3 1649 1879 410679751 410679991 6.190000e-57 231.0
27 TraesCS5B01G311300 chr5D 96.000 50 2 0 611 660 410619997 410620046 6.600000e-12 82.4
28 TraesCS5B01G311300 chr2D 85.271 645 68 19 1 626 30416991 30417627 8.680000e-180 640.0
29 TraesCS5B01G311300 chr2D 89.167 120 12 1 1877 1995 561906202 561906083 6.410000e-32 148.0
30 TraesCS5B01G311300 chr2D 89.423 104 11 0 2686 2789 603671167 603671270 6.460000e-27 132.0
31 TraesCS5B01G311300 chr2D 79.024 205 25 7 114 316 87939122 87939310 1.080000e-24 124.0
32 TraesCS5B01G311300 chr6A 84.160 625 78 15 1 614 97749340 97748726 1.150000e-163 586.0
33 TraesCS5B01G311300 chr1B 89.130 460 50 0 963 1422 562433876 562433417 8.930000e-160 573.0
34 TraesCS5B01G311300 chr3A 83.729 590 79 12 10 592 155050248 155049669 2.520000e-150 542.0
35 TraesCS5B01G311300 chr1A 84.317 542 71 10 10 547 9748249 9747718 4.240000e-143 518.0
36 TraesCS5B01G311300 chr1A 90.756 119 10 1 1877 1994 423657679 423657797 1.070000e-34 158.0
37 TraesCS5B01G311300 chr6B 81.801 522 80 12 105 618 109073604 109073090 9.520000e-115 424.0
38 TraesCS5B01G311300 chr6B 81.377 494 80 8 105 593 109108643 109109129 2.680000e-105 392.0
39 TraesCS5B01G311300 chr6B 88.976 127 11 2 1875 1999 648646737 648646862 1.380000e-33 154.0
40 TraesCS5B01G311300 chr6B 88.095 126 13 2 1872 1995 210275482 210275607 6.410000e-32 148.0
41 TraesCS5B01G311300 chr6B 79.612 206 22 8 114 316 550807856 550807668 2.320000e-26 130.0
42 TraesCS5B01G311300 chr2B 83.488 430 57 12 189 612 209135497 209135918 3.470000e-104 388.0
43 TraesCS5B01G311300 chr2B 90.678 118 10 1 1878 1994 89499066 89498949 3.830000e-34 156.0
44 TraesCS5B01G311300 chr4A 91.667 120 7 3 1877 1994 153242613 153242495 2.290000e-36 163.0
45 TraesCS5B01G311300 chr4A 90.000 120 9 3 1878 1995 544199320 544199438 4.960000e-33 152.0
46 TraesCS5B01G311300 chr2A 88.372 129 11 4 1876 2002 560689355 560689229 4.960000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G311300 chr5B 493084846 493087718 2872 True 1915.333333 5306 90.058667 1 2873 3 chr5B.!!$R3 2872
1 TraesCS5B01G311300 chr5B 492782478 492783315 837 False 537.000000 691 85.030500 980 1867 2 chr5B.!!$F3 887
2 TraesCS5B01G311300 chr5B 123208780 123209313 533 False 486.000000 486 83.302000 79 611 1 chr5B.!!$F1 532
3 TraesCS5B01G311300 chr5A 522223348 522225316 1968 False 600.160000 1339 88.805400 611 2801 5 chr5A.!!$F3 2190
4 TraesCS5B01G311300 chr5A 522082662 522083573 911 False 546.000000 715 84.136500 920 1880 2 chr5A.!!$F2 960
5 TraesCS5B01G311300 chr5A 578554220 578554751 531 False 462.000000 462 82.560000 79 611 1 chr5A.!!$F1 532
6 TraesCS5B01G311300 chr5A 522425201 522425930 729 False 411.500000 586 87.200500 963 1879 2 chr5A.!!$F4 916
7 TraesCS5B01G311300 chr5D 410619997 410621179 1182 False 685.133333 1304 94.168000 611 1881 3 chr5D.!!$F4 1270
8 TraesCS5B01G311300 chr5D 410490736 410491623 887 False 553.500000 708 84.826000 927 1865 2 chr5D.!!$F3 938
9 TraesCS5B01G311300 chr2D 30416991 30417627 636 False 640.000000 640 85.271000 1 626 1 chr2D.!!$F1 625
10 TraesCS5B01G311300 chr6A 97748726 97749340 614 True 586.000000 586 84.160000 1 614 1 chr6A.!!$R1 613
11 TraesCS5B01G311300 chr3A 155049669 155050248 579 True 542.000000 542 83.729000 10 592 1 chr3A.!!$R1 582
12 TraesCS5B01G311300 chr1A 9747718 9748249 531 True 518.000000 518 84.317000 10 547 1 chr1A.!!$R1 537
13 TraesCS5B01G311300 chr6B 109073090 109073604 514 True 424.000000 424 81.801000 105 618 1 chr6B.!!$R1 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 594 0.035439 CCAACCTAGCACCGTCCAAT 60.035 55.0 0.00 0.0 0.00 3.16 F
1478 1523 0.249489 ATTATCCCAGTCGCTGTCGC 60.249 55.0 6.19 0.0 35.26 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1496 1541 0.032678 CGACGGGATAATCTGCTGCT 59.967 55.0 0.00 0.00 0.0 4.24 R
2397 2485 0.314935 CACTTGCAAGCCGTCCAAAT 59.685 50.0 26.27 0.04 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.210358 GAAGAGTGTCTTCCTCTGTCG 57.790 52.381 5.50 0.00 45.34 4.35
98 102 3.684305 TGATGTCTACACAATTTCTGGCG 59.316 43.478 0.00 0.00 35.64 5.69
126 130 0.532115 GGTATGGTTGCTTTGCAGGG 59.468 55.000 0.00 0.00 40.61 4.45
145 149 1.211457 GGCATGTCTCAGAATCCACCT 59.789 52.381 0.00 0.00 0.00 4.00
155 159 4.645535 TCAGAATCCACCTTGTCAAGAAG 58.354 43.478 14.42 5.79 0.00 2.85
159 163 1.142870 TCCACCTTGTCAAGAAGTGGG 59.857 52.381 27.35 16.10 30.87 4.61
172 176 3.454858 AGAAGTGGGAGCCAAAGATCTA 58.545 45.455 0.00 0.00 34.18 1.98
173 177 4.043596 AGAAGTGGGAGCCAAAGATCTAT 58.956 43.478 0.00 0.00 34.18 1.98
174 178 3.853355 AGTGGGAGCCAAAGATCTATG 57.147 47.619 0.00 0.00 34.18 2.23
182 186 4.775236 AGCCAAAGATCTATGTGGAACTC 58.225 43.478 19.36 5.97 38.04 3.01
211 215 5.459762 GCATTTTCGTCACATATTTCATGGG 59.540 40.000 0.00 0.00 0.00 4.00
215 224 4.641396 TCGTCACATATTTCATGGGGATC 58.359 43.478 0.00 0.00 0.00 3.36
269 278 6.250527 CCTTTAAACTTTCTGTCGTTGTGTTG 59.749 38.462 0.00 0.00 0.00 3.33
272 281 4.078363 ACTTTCTGTCGTTGTGTTGTTG 57.922 40.909 0.00 0.00 0.00 3.33
277 292 4.861210 TCTGTCGTTGTGTTGTTGTTTTT 58.139 34.783 0.00 0.00 0.00 1.94
321 336 9.865321 ACAATTGAATGTTGAATTCTTATCAGG 57.135 29.630 13.59 2.18 0.00 3.86
330 345 7.177216 TGTTGAATTCTTATCAGGTGCAGAAAT 59.823 33.333 7.05 0.00 0.00 2.17
374 390 8.478066 TCATTACTTTATGAGTATGTGTGAGCT 58.522 33.333 0.00 0.00 40.44 4.09
375 391 9.102757 CATTACTTTATGAGTATGTGTGAGCTT 57.897 33.333 0.00 0.00 40.44 3.74
376 392 9.672673 ATTACTTTATGAGTATGTGTGAGCTTT 57.327 29.630 0.00 0.00 40.44 3.51
392 409 1.948144 GCTTTTCTCCCTCTGTCTGGC 60.948 57.143 0.00 0.00 0.00 4.85
405 422 2.629137 CTGTCTGGCTCTATCTCATGCT 59.371 50.000 0.00 0.00 0.00 3.79
409 426 3.966006 TCTGGCTCTATCTCATGCTTTCT 59.034 43.478 0.00 0.00 0.00 2.52
455 472 7.439655 GCCCTAATCTCTTTGTATTAGAGTGTG 59.560 40.741 0.00 0.00 40.04 3.82
486 504 8.902540 TTTAGCTCTCTTGAAATTTGTAGTGA 57.097 30.769 0.00 0.00 0.00 3.41
520 544 3.255395 TGCAATGTCCATGTGTTACAAGG 59.745 43.478 0.00 0.00 38.26 3.61
523 547 5.048364 GCAATGTCCATGTGTTACAAGGTAA 60.048 40.000 3.51 0.00 38.10 2.85
527 551 6.065374 TGTCCATGTGTTACAAGGTAACAAT 58.935 36.000 19.94 13.79 38.10 2.71
565 589 1.149627 TTTGCCAACCTAGCACCGT 59.850 52.632 0.00 0.00 40.69 4.83
570 594 0.035439 CCAACCTAGCACCGTCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
592 616 3.997064 CTCTCAAGAGGCGCCACCG 62.997 68.421 31.54 16.85 46.52 4.94
674 701 3.249189 GGTGGCTCCACTCACCCA 61.249 66.667 17.57 0.00 45.60 4.51
723 753 3.712881 GCCGCTGAACGTCGCTTT 61.713 61.111 0.00 0.00 41.42 3.51
747 777 3.591527 TGGGTCCTTGTGAAATCCTATGT 59.408 43.478 0.00 0.00 0.00 2.29
817 847 0.752054 TGTACACCGGAAAAGGACGT 59.248 50.000 9.46 0.00 34.73 4.34
854 888 2.754648 GCTGCTTCATGTGAGCGTA 58.245 52.632 15.52 2.88 0.00 4.42
855 889 1.293924 GCTGCTTCATGTGAGCGTAT 58.706 50.000 15.52 0.00 0.00 3.06
857 891 1.004185 CTGCTTCATGTGAGCGTATGC 60.004 52.381 15.52 0.00 43.24 3.14
881 915 1.810755 TGAGTGACGCGCCTATATAGG 59.189 52.381 22.63 22.63 46.42 2.57
886 920 0.974383 ACGCGCCTATATAGGGCTTT 59.026 50.000 26.76 15.45 46.73 3.51
1472 1517 1.506493 CAGCAGATTATCCCAGTCGC 58.494 55.000 0.00 0.00 0.00 5.19
1473 1518 1.069823 CAGCAGATTATCCCAGTCGCT 59.930 52.381 0.00 0.00 0.00 4.93
1474 1519 1.069823 AGCAGATTATCCCAGTCGCTG 59.930 52.381 0.00 0.00 0.00 5.18
1475 1520 1.202580 GCAGATTATCCCAGTCGCTGT 60.203 52.381 6.19 0.00 0.00 4.40
1476 1521 2.748605 CAGATTATCCCAGTCGCTGTC 58.251 52.381 6.19 0.00 0.00 3.51
1477 1522 1.338337 AGATTATCCCAGTCGCTGTCG 59.662 52.381 6.19 0.00 0.00 4.35
1478 1523 0.249489 ATTATCCCAGTCGCTGTCGC 60.249 55.000 6.19 0.00 35.26 5.19
1479 1524 2.292794 TTATCCCAGTCGCTGTCGCC 62.293 60.000 6.19 0.00 35.26 5.54
1495 1540 3.822192 CCGTCGTGGCGATCCAGA 61.822 66.667 0.00 0.00 44.48 3.86
1496 1541 2.180769 CGTCGTGGCGATCCAGAA 59.819 61.111 0.00 0.00 44.48 3.02
1497 1542 1.874019 CGTCGTGGCGATCCAGAAG 60.874 63.158 0.00 0.00 44.48 2.85
1498 1543 2.167861 GTCGTGGCGATCCAGAAGC 61.168 63.158 0.00 0.00 44.48 3.86
1499 1544 2.125552 CGTGGCGATCCAGAAGCA 60.126 61.111 0.00 0.00 44.48 3.91
1500 1545 2.169789 CGTGGCGATCCAGAAGCAG 61.170 63.158 0.00 0.00 44.48 4.24
1501 1546 2.124983 TGGCGATCCAGAAGCAGC 60.125 61.111 0.00 0.00 37.47 5.25
1502 1547 2.124983 GGCGATCCAGAAGCAGCA 60.125 61.111 0.00 0.00 0.00 4.41
1503 1548 2.178890 GGCGATCCAGAAGCAGCAG 61.179 63.158 0.00 0.00 0.00 4.24
1504 1549 1.153489 GCGATCCAGAAGCAGCAGA 60.153 57.895 0.00 0.00 0.00 4.26
1505 1550 0.532417 GCGATCCAGAAGCAGCAGAT 60.532 55.000 0.00 0.00 0.00 2.90
1506 1551 1.950828 CGATCCAGAAGCAGCAGATT 58.049 50.000 0.00 0.00 0.00 2.40
1507 1552 2.804572 GCGATCCAGAAGCAGCAGATTA 60.805 50.000 0.00 0.00 0.00 1.75
1508 1553 3.661944 CGATCCAGAAGCAGCAGATTAT 58.338 45.455 0.00 0.00 0.00 1.28
1509 1554 3.679025 CGATCCAGAAGCAGCAGATTATC 59.321 47.826 0.00 0.00 0.00 1.75
1550 1595 1.738350 CAGAAGCAGCAGATTCCAGTG 59.262 52.381 3.24 0.00 40.97 3.66
1800 1863 4.129737 CGGGCGAAAGAGCGAGGA 62.130 66.667 0.00 0.00 38.18 3.71
1861 1936 3.010420 GGAGCCACTTGTTCACCTAATC 58.990 50.000 0.00 0.00 0.00 1.75
1881 1960 8.251721 CCTAATCTAGCAGTGTAAAGTTGTACT 58.748 37.037 0.00 0.00 0.00 2.73
1882 1961 9.291664 CTAATCTAGCAGTGTAAAGTTGTACTC 57.708 37.037 0.00 0.00 0.00 2.59
1883 1962 6.022163 TCTAGCAGTGTAAAGTTGTACTCC 57.978 41.667 0.00 0.00 0.00 3.85
1884 1963 4.004196 AGCAGTGTAAAGTTGTACTCCC 57.996 45.455 0.00 0.00 0.00 4.30
1885 1964 3.646637 AGCAGTGTAAAGTTGTACTCCCT 59.353 43.478 0.00 0.00 0.00 4.20
1886 1965 3.995048 GCAGTGTAAAGTTGTACTCCCTC 59.005 47.826 0.00 0.00 0.00 4.30
1887 1966 4.262506 GCAGTGTAAAGTTGTACTCCCTCT 60.263 45.833 0.00 0.00 0.00 3.69
1888 1967 5.230942 CAGTGTAAAGTTGTACTCCCTCTG 58.769 45.833 0.00 0.00 0.00 3.35
1889 1968 4.900054 AGTGTAAAGTTGTACTCCCTCTGT 59.100 41.667 0.00 0.00 0.00 3.41
1890 1969 5.010820 AGTGTAAAGTTGTACTCCCTCTGTC 59.989 44.000 0.00 0.00 0.00 3.51
1891 1970 4.282703 TGTAAAGTTGTACTCCCTCTGTCC 59.717 45.833 0.00 0.00 0.00 4.02
1892 1971 1.546961 AGTTGTACTCCCTCTGTCCG 58.453 55.000 0.00 0.00 0.00 4.79
1893 1972 0.531200 GTTGTACTCCCTCTGTCCGG 59.469 60.000 0.00 0.00 0.00 5.14
1894 1973 0.406750 TTGTACTCCCTCTGTCCGGA 59.593 55.000 0.00 0.00 0.00 5.14
1895 1974 0.406750 TGTACTCCCTCTGTCCGGAA 59.593 55.000 5.23 0.00 0.00 4.30
1896 1975 1.006758 TGTACTCCCTCTGTCCGGAAT 59.993 52.381 5.23 0.00 0.00 3.01
1897 1976 2.108970 GTACTCCCTCTGTCCGGAATT 58.891 52.381 5.23 0.00 0.00 2.17
1898 1977 2.544844 ACTCCCTCTGTCCGGAATTA 57.455 50.000 5.23 0.00 0.00 1.40
1899 1978 2.108970 ACTCCCTCTGTCCGGAATTAC 58.891 52.381 5.23 0.00 0.00 1.89
1900 1979 2.292323 ACTCCCTCTGTCCGGAATTACT 60.292 50.000 5.23 0.00 0.00 2.24
1901 1980 2.766828 CTCCCTCTGTCCGGAATTACTT 59.233 50.000 5.23 0.00 0.00 2.24
1902 1981 2.500098 TCCCTCTGTCCGGAATTACTTG 59.500 50.000 5.23 0.00 0.00 3.16
1903 1982 2.236395 CCCTCTGTCCGGAATTACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
1904 1983 3.262420 CCTCTGTCCGGAATTACTTGTG 58.738 50.000 5.23 0.00 0.00 3.33
1905 1984 2.673368 CTCTGTCCGGAATTACTTGTGC 59.327 50.000 5.23 0.00 0.00 4.57
1906 1985 1.393539 CTGTCCGGAATTACTTGTGCG 59.606 52.381 5.23 0.00 0.00 5.34
1907 1986 1.001068 TGTCCGGAATTACTTGTGCGA 59.999 47.619 5.23 0.00 0.00 5.10
1908 1987 2.070783 GTCCGGAATTACTTGTGCGAA 58.929 47.619 5.23 0.00 0.00 4.70
1909 1988 2.481185 GTCCGGAATTACTTGTGCGAAA 59.519 45.455 5.23 0.00 0.00 3.46
1910 1989 3.058777 GTCCGGAATTACTTGTGCGAAAA 60.059 43.478 5.23 0.00 0.00 2.29
1911 1990 3.754323 TCCGGAATTACTTGTGCGAAAAT 59.246 39.130 0.00 0.00 0.00 1.82
1912 1991 3.851403 CCGGAATTACTTGTGCGAAAATG 59.149 43.478 0.00 0.00 0.00 2.32
1913 1992 3.851403 CGGAATTACTTGTGCGAAAATGG 59.149 43.478 0.00 0.00 0.00 3.16
1914 1993 4.378978 CGGAATTACTTGTGCGAAAATGGA 60.379 41.667 0.00 0.00 0.00 3.41
1915 1994 5.650543 GGAATTACTTGTGCGAAAATGGAT 58.349 37.500 0.00 0.00 0.00 3.41
1916 1995 6.099341 GGAATTACTTGTGCGAAAATGGATT 58.901 36.000 0.00 0.00 0.00 3.01
1917 1996 7.254852 GGAATTACTTGTGCGAAAATGGATTA 58.745 34.615 0.00 0.00 0.00 1.75
1918 1997 7.757624 GGAATTACTTGTGCGAAAATGGATTAA 59.242 33.333 0.00 0.00 0.00 1.40
1919 1998 9.134734 GAATTACTTGTGCGAAAATGGATTAAA 57.865 29.630 0.00 0.00 0.00 1.52
1920 1999 9.482627 AATTACTTGTGCGAAAATGGATTAAAA 57.517 25.926 0.00 0.00 0.00 1.52
1921 2000 9.651913 ATTACTTGTGCGAAAATGGATTAAAAT 57.348 25.926 0.00 0.00 0.00 1.82
1922 2001 7.350110 ACTTGTGCGAAAATGGATTAAAATG 57.650 32.000 0.00 0.00 0.00 2.32
1923 2002 7.151308 ACTTGTGCGAAAATGGATTAAAATGA 58.849 30.769 0.00 0.00 0.00 2.57
1924 2003 7.655328 ACTTGTGCGAAAATGGATTAAAATGAA 59.345 29.630 0.00 0.00 0.00 2.57
1925 2004 8.545229 TTGTGCGAAAATGGATTAAAATGAAT 57.455 26.923 0.00 0.00 0.00 2.57
1926 2005 7.961855 TGTGCGAAAATGGATTAAAATGAATG 58.038 30.769 0.00 0.00 0.00 2.67
1927 2006 7.601886 TGTGCGAAAATGGATTAAAATGAATGT 59.398 29.630 0.00 0.00 0.00 2.71
1928 2007 9.081997 GTGCGAAAATGGATTAAAATGAATGTA 57.918 29.630 0.00 0.00 0.00 2.29
1929 2008 9.814899 TGCGAAAATGGATTAAAATGAATGTAT 57.185 25.926 0.00 0.00 0.00 2.29
1968 2047 8.226819 ACGTCTAGATACATCAATTTCTCAGA 57.773 34.615 0.00 0.00 0.00 3.27
1969 2048 8.132362 ACGTCTAGATACATCAATTTCTCAGAC 58.868 37.037 0.00 0.00 0.00 3.51
1970 2049 8.131731 CGTCTAGATACATCAATTTCTCAGACA 58.868 37.037 0.00 0.00 0.00 3.41
1971 2050 9.809096 GTCTAGATACATCAATTTCTCAGACAA 57.191 33.333 0.00 0.00 0.00 3.18
1973 2052 9.814899 CTAGATACATCAATTTCTCAGACAAGT 57.185 33.333 0.00 0.00 0.00 3.16
1979 2058 9.512588 ACATCAATTTCTCAGACAAGTATTTCT 57.487 29.630 0.00 0.00 0.00 2.52
1980 2059 9.770503 CATCAATTTCTCAGACAAGTATTTCTG 57.229 33.333 0.00 0.00 40.65 3.02
1981 2060 8.327941 TCAATTTCTCAGACAAGTATTTCTGG 57.672 34.615 0.00 0.00 39.86 3.86
1982 2061 8.156820 TCAATTTCTCAGACAAGTATTTCTGGA 58.843 33.333 0.00 0.00 39.86 3.86
1983 2062 7.913674 ATTTCTCAGACAAGTATTTCTGGAC 57.086 36.000 0.00 0.00 39.86 4.02
1984 2063 5.060662 TCTCAGACAAGTATTTCTGGACG 57.939 43.478 0.00 0.00 39.86 4.79
1985 2064 4.082190 TCTCAGACAAGTATTTCTGGACGG 60.082 45.833 0.00 0.00 39.86 4.79
1986 2065 3.830178 TCAGACAAGTATTTCTGGACGGA 59.170 43.478 0.00 0.00 39.86 4.69
1987 2066 4.082190 TCAGACAAGTATTTCTGGACGGAG 60.082 45.833 0.00 0.00 39.86 4.63
1988 2067 3.195825 AGACAAGTATTTCTGGACGGAGG 59.804 47.826 0.00 0.00 0.00 4.30
1989 2068 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
1990 2069 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
1991 2070 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
1992 2071 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
1993 2072 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
1994 2073 1.553706 TTTCTGGACGGAGGGAGTAC 58.446 55.000 0.00 0.00 0.00 2.73
1995 2074 0.324091 TTCTGGACGGAGGGAGTACC 60.324 60.000 0.00 0.00 40.67 3.34
1996 2075 1.000019 CTGGACGGAGGGAGTACCA 60.000 63.158 0.00 0.00 43.89 3.25
1997 2076 0.397254 CTGGACGGAGGGAGTACCAT 60.397 60.000 0.00 0.00 43.89 3.55
1998 2077 0.042131 TGGACGGAGGGAGTACCATT 59.958 55.000 0.00 0.00 43.89 3.16
1999 2078 1.288633 TGGACGGAGGGAGTACCATTA 59.711 52.381 0.00 0.00 43.89 1.90
2000 2079 2.090943 TGGACGGAGGGAGTACCATTAT 60.091 50.000 0.00 0.00 43.89 1.28
2001 2080 2.970640 GGACGGAGGGAGTACCATTATT 59.029 50.000 0.00 0.00 43.89 1.40
2002 2081 4.154942 GGACGGAGGGAGTACCATTATTA 58.845 47.826 0.00 0.00 43.89 0.98
2003 2082 4.220163 GGACGGAGGGAGTACCATTATTAG 59.780 50.000 0.00 0.00 43.89 1.73
2004 2083 5.070823 ACGGAGGGAGTACCATTATTAGA 57.929 43.478 0.00 0.00 43.89 2.10
2005 2084 5.652324 ACGGAGGGAGTACCATTATTAGAT 58.348 41.667 0.00 0.00 43.89 1.98
2006 2085 6.797707 ACGGAGGGAGTACCATTATTAGATA 58.202 40.000 0.00 0.00 43.89 1.98
2007 2086 6.890814 ACGGAGGGAGTACCATTATTAGATAG 59.109 42.308 0.00 0.00 43.89 2.08
2008 2087 6.890814 CGGAGGGAGTACCATTATTAGATAGT 59.109 42.308 0.00 0.00 43.89 2.12
2009 2088 7.396623 CGGAGGGAGTACCATTATTAGATAGTT 59.603 40.741 0.00 0.00 43.89 2.24
2010 2089 8.532819 GGAGGGAGTACCATTATTAGATAGTTG 58.467 40.741 0.00 0.00 43.89 3.16
2011 2090 9.091220 GAGGGAGTACCATTATTAGATAGTTGT 57.909 37.037 0.00 0.00 43.89 3.32
2012 2091 8.871125 AGGGAGTACCATTATTAGATAGTTGTG 58.129 37.037 0.00 0.00 43.89 3.33
2013 2092 8.648693 GGGAGTACCATTATTAGATAGTTGTGT 58.351 37.037 0.00 0.00 39.85 3.72
2028 2107 9.956720 AGATAGTTGTGTTCTTTTCAATTTGAG 57.043 29.630 0.00 0.00 0.00 3.02
2029 2108 9.185192 GATAGTTGTGTTCTTTTCAATTTGAGG 57.815 33.333 0.00 0.00 0.00 3.86
2030 2109 7.169158 AGTTGTGTTCTTTTCAATTTGAGGA 57.831 32.000 0.00 0.00 0.00 3.71
2031 2110 7.260603 AGTTGTGTTCTTTTCAATTTGAGGAG 58.739 34.615 0.00 2.60 0.00 3.69
2032 2111 7.122650 AGTTGTGTTCTTTTCAATTTGAGGAGA 59.877 33.333 0.00 4.77 0.00 3.71
2033 2112 7.403312 TGTGTTCTTTTCAATTTGAGGAGAA 57.597 32.000 16.32 16.32 31.36 2.87
2034 2113 7.835822 TGTGTTCTTTTCAATTTGAGGAGAAA 58.164 30.769 19.50 9.57 33.81 2.52
2035 2114 7.759433 TGTGTTCTTTTCAATTTGAGGAGAAAC 59.241 33.333 19.50 18.47 33.81 2.78
2036 2115 7.759433 GTGTTCTTTTCAATTTGAGGAGAAACA 59.241 33.333 19.50 17.11 33.81 2.83
2037 2116 7.975616 TGTTCTTTTCAATTTGAGGAGAAACAG 59.024 33.333 19.50 2.38 33.81 3.16
2038 2117 7.880160 TCTTTTCAATTTGAGGAGAAACAGA 57.120 32.000 9.87 0.00 30.47 3.41
2039 2118 7.934457 TCTTTTCAATTTGAGGAGAAACAGAG 58.066 34.615 9.87 0.00 30.47 3.35
2065 2144 4.143094 GCATCTTGTTCCTTCGTTGTACTC 60.143 45.833 0.00 0.00 0.00 2.59
2066 2145 4.659111 TCTTGTTCCTTCGTTGTACTCA 57.341 40.909 0.00 0.00 0.00 3.41
2067 2146 5.209818 TCTTGTTCCTTCGTTGTACTCAT 57.790 39.130 0.00 0.00 0.00 2.90
2069 2148 5.465390 TCTTGTTCCTTCGTTGTACTCATTG 59.535 40.000 0.00 0.00 0.00 2.82
2101 2184 3.670625 TCCCGGTTTGAGTATTTGTGAG 58.329 45.455 0.00 0.00 0.00 3.51
2103 2186 3.558321 CCCGGTTTGAGTATTTGTGAGGA 60.558 47.826 0.00 0.00 0.00 3.71
2111 2194 4.540099 TGAGTATTTGTGAGGAAGGGGATT 59.460 41.667 0.00 0.00 0.00 3.01
2112 2195 4.860022 AGTATTTGTGAGGAAGGGGATTG 58.140 43.478 0.00 0.00 0.00 2.67
2113 2196 1.923356 TTTGTGAGGAAGGGGATTGC 58.077 50.000 0.00 0.00 0.00 3.56
2114 2197 0.039618 TTGTGAGGAAGGGGATTGCC 59.960 55.000 0.00 0.00 0.00 4.52
2115 2198 0.846427 TGTGAGGAAGGGGATTGCCT 60.846 55.000 0.00 0.00 0.00 4.75
2116 2199 1.213296 GTGAGGAAGGGGATTGCCTA 58.787 55.000 0.00 0.00 0.00 3.93
2117 2200 1.777272 GTGAGGAAGGGGATTGCCTAT 59.223 52.381 0.00 0.00 0.00 2.57
2118 2201 2.175715 GTGAGGAAGGGGATTGCCTATT 59.824 50.000 0.00 0.00 0.00 1.73
2119 2202 3.394606 GTGAGGAAGGGGATTGCCTATTA 59.605 47.826 0.00 0.00 0.00 0.98
2120 2203 3.394606 TGAGGAAGGGGATTGCCTATTAC 59.605 47.826 0.00 0.00 0.00 1.89
2121 2204 3.394606 GAGGAAGGGGATTGCCTATTACA 59.605 47.826 0.00 0.00 0.00 2.41
2122 2205 3.138468 AGGAAGGGGATTGCCTATTACAC 59.862 47.826 0.00 0.00 0.00 2.90
2123 2206 3.487372 GAAGGGGATTGCCTATTACACC 58.513 50.000 0.00 0.00 0.00 4.16
2124 2207 2.498441 AGGGGATTGCCTATTACACCA 58.502 47.619 0.00 0.00 0.00 4.17
2125 2208 2.856231 AGGGGATTGCCTATTACACCAA 59.144 45.455 0.00 0.00 0.00 3.67
2126 2209 3.467103 AGGGGATTGCCTATTACACCAAT 59.533 43.478 0.00 0.00 0.00 3.16
2127 2210 4.078630 AGGGGATTGCCTATTACACCAATT 60.079 41.667 0.00 0.00 0.00 2.32
2128 2211 5.135362 AGGGGATTGCCTATTACACCAATTA 59.865 40.000 0.00 0.00 0.00 1.40
2129 2212 6.016555 GGGGATTGCCTATTACACCAATTAT 58.983 40.000 0.00 0.00 0.00 1.28
2130 2213 6.496911 GGGGATTGCCTATTACACCAATTATT 59.503 38.462 0.00 0.00 0.00 1.40
2131 2214 7.672239 GGGGATTGCCTATTACACCAATTATTA 59.328 37.037 0.00 0.00 0.00 0.98
2132 2215 9.255029 GGGATTGCCTATTACACCAATTATTAT 57.745 33.333 0.00 0.00 0.00 1.28
2172 2255 5.305386 CCTTCTTCCTGATTTGGGAAAAACT 59.695 40.000 0.00 0.00 41.58 2.66
2180 2263 4.522789 TGATTTGGGAAAAACTGAGTAGGC 59.477 41.667 0.00 0.00 0.00 3.93
2208 2291 7.222999 GTGTGTTCCTTCATTCATAGTAGTAGC 59.777 40.741 0.00 0.00 0.00 3.58
2209 2292 7.093509 TGTGTTCCTTCATTCATAGTAGTAGCA 60.094 37.037 0.00 0.00 0.00 3.49
2210 2293 7.222999 GTGTTCCTTCATTCATAGTAGTAGCAC 59.777 40.741 0.00 0.00 0.00 4.40
2218 2301 8.311109 TCATTCATAGTAGTAGCACTTGTCAAA 58.689 33.333 0.00 0.00 0.00 2.69
2232 2320 4.517832 ACTTGTCAAATTCCCGGTTTCTAC 59.482 41.667 0.00 0.00 0.00 2.59
2302 2390 1.398739 CTCGAGAGTACATCGTGCACT 59.601 52.381 16.19 0.00 40.95 4.40
2303 2391 1.130561 TCGAGAGTACATCGTGCACTG 59.869 52.381 16.19 9.99 40.95 3.66
2304 2392 1.272781 GAGAGTACATCGTGCACTGC 58.727 55.000 16.19 0.00 0.00 4.40
2305 2393 0.603065 AGAGTACATCGTGCACTGCA 59.397 50.000 16.19 0.00 35.60 4.41
2364 2452 1.779569 GACACAATGTCGAAGGACGT 58.220 50.000 0.00 0.00 46.49 4.34
2373 2461 1.026584 TCGAAGGACGTCACTGTTGA 58.973 50.000 18.91 5.46 43.13 3.18
2388 2476 3.881795 CTGTTGATTGACAGCTTGTGAC 58.118 45.455 0.00 0.00 40.43 3.67
2397 2485 2.227149 GACAGCTTGTGACAATGATGCA 59.773 45.455 9.45 0.00 0.00 3.96
2435 2523 4.715713 AGTGGACTCCAAAACTTTACTCC 58.284 43.478 0.00 0.00 34.18 3.85
2439 2527 5.104277 TGGACTCCAAAACTTTACTCCAGAA 60.104 40.000 0.00 0.00 0.00 3.02
2443 2531 8.306313 ACTCCAAAACTTTACTCCAGAAAAAT 57.694 30.769 0.00 0.00 0.00 1.82
2463 2551 1.487142 TGGAGAAAGAACGGACAACCA 59.513 47.619 0.00 0.00 35.59 3.67
2472 2560 2.779755 ACGGACAACCAGATTATGCA 57.220 45.000 0.00 0.00 35.59 3.96
2484 2572 3.000041 AGATTATGCACGCAAGAACGAA 59.000 40.909 0.00 0.00 43.62 3.85
2511 2599 0.185901 ATGTCCAGCCTGTTTGGTGT 59.814 50.000 0.00 0.00 37.02 4.16
2517 2605 0.106519 AGCCTGTTTGGTGTTGCTCT 60.107 50.000 0.00 0.00 38.35 4.09
2528 2616 1.127582 GTGTTGCTCTGCTCGCTAAAG 59.872 52.381 0.00 0.00 0.00 1.85
2533 2621 2.069273 GCTCTGCTCGCTAAAGTTCAA 58.931 47.619 0.00 0.00 0.00 2.69
2544 2632 4.095483 CGCTAAAGTTCAATTCAGCTCCAT 59.905 41.667 0.00 0.00 0.00 3.41
2545 2633 5.576895 GCTAAAGTTCAATTCAGCTCCATC 58.423 41.667 0.00 0.00 0.00 3.51
2547 2635 6.349611 GCTAAAGTTCAATTCAGCTCCATCAA 60.350 38.462 0.00 0.00 0.00 2.57
2558 2646 2.494870 AGCTCCATCAATTCCACTTTGC 59.505 45.455 0.00 0.00 0.00 3.68
2562 2650 2.028839 CCATCAATTCCACTTTGCAGCA 60.029 45.455 0.00 0.00 0.00 4.41
2580 2668 2.174210 AGCATGCAACTCCACCATAGAT 59.826 45.455 21.98 0.00 0.00 1.98
2584 2672 4.422073 TGCAACTCCACCATAGATTAGG 57.578 45.455 0.00 0.00 0.00 2.69
2598 2686 8.524450 ACCATAGATTAGGTGATCCTGTTTGGA 61.524 40.741 0.00 0.00 44.81 3.53
2609 2697 4.908601 TCCTGTTTGGATTTCAGCTAGA 57.091 40.909 0.00 0.00 40.56 2.43
2612 2700 4.578105 CCTGTTTGGATTTCAGCTAGATCC 59.422 45.833 12.83 12.83 39.81 3.36
2613 2701 4.191544 TGTTTGGATTTCAGCTAGATCCG 58.808 43.478 14.12 0.00 41.79 4.18
2614 2702 4.081142 TGTTTGGATTTCAGCTAGATCCGA 60.081 41.667 14.12 11.02 41.79 4.55
2617 2705 3.706594 TGGATTTCAGCTAGATCCGACTT 59.293 43.478 14.12 0.00 41.79 3.01
2646 2734 8.892723 AGAATTGAAATTTTGGTGAAAAAGGTC 58.107 29.630 0.00 0.00 41.00 3.85
2655 2744 4.312443 TGGTGAAAAAGGTCTATCGTGTC 58.688 43.478 0.00 0.00 0.00 3.67
2656 2745 3.683340 GGTGAAAAAGGTCTATCGTGTCC 59.317 47.826 0.00 0.00 0.00 4.02
2657 2746 3.683340 GTGAAAAAGGTCTATCGTGTCCC 59.317 47.826 0.00 0.00 0.00 4.46
2663 2752 2.445905 AGGTCTATCGTGTCCCTGGATA 59.554 50.000 0.00 0.00 0.00 2.59
2670 2759 7.008332 TCTATCGTGTCCCTGGATATTTTAGA 58.992 38.462 0.00 0.00 0.00 2.10
2688 2777 8.874745 ATTTTAGAACGATGTTTTGACGTATG 57.125 30.769 0.00 0.00 39.31 2.39
2690 2779 4.312443 AGAACGATGTTTTGACGTATGGT 58.688 39.130 0.00 0.00 39.31 3.55
2694 2783 4.512198 ACGATGTTTTGACGTATGGTTTGA 59.488 37.500 0.00 0.00 38.47 2.69
2703 2792 5.543714 TGACGTATGGTTTGAGTGTTGTAT 58.456 37.500 0.00 0.00 0.00 2.29
2867 2956 9.927668 ATTAAAAGGTTTACATGATGTCCAAAG 57.072 29.630 0.00 0.00 0.00 2.77
2868 2957 7.595819 AAAAGGTTTACATGATGTCCAAAGA 57.404 32.000 0.00 0.00 0.00 2.52
2869 2958 7.595819 AAAGGTTTACATGATGTCCAAAGAA 57.404 32.000 0.00 0.00 0.00 2.52
2870 2959 7.781324 AAGGTTTACATGATGTCCAAAGAAT 57.219 32.000 0.00 0.00 0.00 2.40
2871 2960 8.877864 AAGGTTTACATGATGTCCAAAGAATA 57.122 30.769 0.00 0.00 0.00 1.75
2872 2961 9.479549 AAGGTTTACATGATGTCCAAAGAATAT 57.520 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.101997 AGTAAAAATGCTTTCAATGCTAGCC 58.898 36.000 13.29 0.00 34.03 3.93
98 102 5.519927 GCAAAGCAACCATACCATTCAATAC 59.480 40.000 0.00 0.00 0.00 1.89
126 130 2.681848 CAAGGTGGATTCTGAGACATGC 59.318 50.000 0.00 0.00 0.00 4.06
145 149 0.843309 TGGCTCCCACTTCTTGACAA 59.157 50.000 0.00 0.00 0.00 3.18
155 159 3.209410 CACATAGATCTTTGGCTCCCAC 58.791 50.000 16.27 0.00 30.78 4.61
159 163 4.775236 AGTTCCACATAGATCTTTGGCTC 58.225 43.478 16.27 9.63 0.00 4.70
172 176 2.592102 AATGCCACTGAGTTCCACAT 57.408 45.000 0.00 0.00 0.00 3.21
173 177 2.363306 AAATGCCACTGAGTTCCACA 57.637 45.000 0.00 0.00 0.00 4.17
174 178 2.350772 CGAAAATGCCACTGAGTTCCAC 60.351 50.000 0.00 0.00 0.00 4.02
182 186 2.995466 ATGTGACGAAAATGCCACTG 57.005 45.000 0.00 0.00 0.00 3.66
211 215 7.920908 GCTAAATGCTCAAATTGTAAGATCC 57.079 36.000 0.00 0.00 38.95 3.36
269 278 5.804979 ACATGAAGTGCTACACAAAAACAAC 59.195 36.000 0.00 0.00 36.74 3.32
272 281 5.455525 GTGACATGAAGTGCTACACAAAAAC 59.544 40.000 0.00 0.00 36.74 2.43
277 292 3.467374 TGTGACATGAAGTGCTACACA 57.533 42.857 0.00 0.00 37.35 3.72
357 372 6.341316 GGAGAAAAGCTCACACATACTCATA 58.659 40.000 0.00 0.00 45.81 2.15
374 390 1.625818 GAGCCAGACAGAGGGAGAAAA 59.374 52.381 0.00 0.00 0.00 2.29
375 391 1.203237 AGAGCCAGACAGAGGGAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
376 392 0.411452 AGAGCCAGACAGAGGGAGAA 59.589 55.000 0.00 0.00 0.00 2.87
392 409 5.021033 ACACCAGAAAGCATGAGATAGAG 57.979 43.478 0.00 0.00 0.00 2.43
405 422 5.713792 TCTGAAACACAAAACACCAGAAA 57.286 34.783 0.00 0.00 0.00 2.52
409 426 3.430098 GGCATCTGAAACACAAAACACCA 60.430 43.478 0.00 0.00 0.00 4.17
486 504 7.424227 CATGGACATTGCATGTTAAAAGTTT 57.576 32.000 0.00 0.00 45.03 2.66
520 544 7.201266 CGCTCATTTCACTTGCTTTATTGTTAC 60.201 37.037 0.00 0.00 0.00 2.50
523 547 5.156355 CGCTCATTTCACTTGCTTTATTGT 58.844 37.500 0.00 0.00 0.00 2.71
527 551 4.829064 AACGCTCATTTCACTTGCTTTA 57.171 36.364 0.00 0.00 0.00 1.85
595 619 1.028330 GTTTACTAGGGGTTGGGCGC 61.028 60.000 0.00 0.00 0.00 6.53
596 620 0.325602 TGTTTACTAGGGGTTGGGCG 59.674 55.000 0.00 0.00 0.00 6.13
661 688 4.394712 CCGGTGGGTGAGTGGAGC 62.395 72.222 0.00 0.00 0.00 4.70
722 752 2.176798 AGGATTTCACAAGGACCCACAA 59.823 45.455 0.00 0.00 0.00 3.33
723 753 1.780309 AGGATTTCACAAGGACCCACA 59.220 47.619 0.00 0.00 0.00 4.17
747 777 1.699083 TCTGTCATCTTGCCACTTGGA 59.301 47.619 0.00 0.00 37.39 3.53
860 894 2.159503 CCTATATAGGCGCGTCACTCAG 60.160 54.545 15.58 2.71 36.53 3.35
898 933 2.614229 GGTGAGAACTGAGAAGAAGGGC 60.614 54.545 0.00 0.00 0.00 5.19
994 1033 2.577059 GGCGACGTCCATCTTGGA 59.423 61.111 10.58 0.00 45.98 3.53
1101 1143 4.760047 GGGTGGCGCGTCTCATGT 62.760 66.667 13.81 0.00 0.00 3.21
1437 1482 1.817099 CTGCTTCTGGATCGCCACC 60.817 63.158 0.00 0.00 39.92 4.61
1444 1489 3.244840 GGGATAATCTGCTGCTTCTGGAT 60.245 47.826 0.00 0.00 0.00 3.41
1478 1523 3.350909 TTCTGGATCGCCACGACGG 62.351 63.158 0.00 0.00 39.92 4.79
1479 1524 1.874019 CTTCTGGATCGCCACGACG 60.874 63.158 0.00 0.00 39.92 5.12
1480 1525 2.167861 GCTTCTGGATCGCCACGAC 61.168 63.158 0.00 0.00 39.92 4.34
1481 1526 2.184322 GCTTCTGGATCGCCACGA 59.816 61.111 0.00 0.00 39.92 4.35
1482 1527 2.125552 TGCTTCTGGATCGCCACG 60.126 61.111 0.00 0.00 39.92 4.94
1483 1528 2.467826 GCTGCTTCTGGATCGCCAC 61.468 63.158 0.00 0.00 39.92 5.01
1484 1529 2.124983 GCTGCTTCTGGATCGCCA 60.125 61.111 0.00 0.00 43.47 5.69
1485 1530 2.124983 TGCTGCTTCTGGATCGCC 60.125 61.111 0.00 0.00 0.00 5.54
1486 1531 0.532417 ATCTGCTGCTTCTGGATCGC 60.532 55.000 0.00 0.00 0.00 4.58
1487 1532 1.950828 AATCTGCTGCTTCTGGATCG 58.049 50.000 0.00 0.00 0.00 3.69
1488 1533 4.002316 GGATAATCTGCTGCTTCTGGATC 58.998 47.826 0.00 0.00 0.00 3.36
1489 1534 3.244840 GGGATAATCTGCTGCTTCTGGAT 60.245 47.826 0.00 0.00 0.00 3.41
1490 1535 2.105477 GGGATAATCTGCTGCTTCTGGA 59.895 50.000 0.00 0.00 0.00 3.86
1491 1536 2.502295 GGGATAATCTGCTGCTTCTGG 58.498 52.381 0.00 0.00 0.00 3.86
1492 1537 2.141517 CGGGATAATCTGCTGCTTCTG 58.858 52.381 0.00 0.00 0.00 3.02
1493 1538 1.765314 ACGGGATAATCTGCTGCTTCT 59.235 47.619 0.00 0.00 0.00 2.85
1494 1539 2.139118 GACGGGATAATCTGCTGCTTC 58.861 52.381 0.00 0.00 0.00 3.86
1495 1540 1.539065 CGACGGGATAATCTGCTGCTT 60.539 52.381 0.00 0.00 0.00 3.91
1496 1541 0.032678 CGACGGGATAATCTGCTGCT 59.967 55.000 0.00 0.00 0.00 4.24
1497 1542 1.560860 GCGACGGGATAATCTGCTGC 61.561 60.000 0.00 0.00 0.00 5.25
1498 1543 0.946221 GGCGACGGGATAATCTGCTG 60.946 60.000 0.00 0.00 0.00 4.41
1499 1544 1.367840 GGCGACGGGATAATCTGCT 59.632 57.895 0.00 0.00 0.00 4.24
1500 1545 3.952811 GGCGACGGGATAATCTGC 58.047 61.111 0.00 0.00 0.00 4.26
1613 1658 2.268920 GGAACCTGCTGCCGATGA 59.731 61.111 0.00 0.00 0.00 2.92
1786 1849 2.881352 CCGTCCTCGCTCTTTCGC 60.881 66.667 0.00 0.00 35.54 4.70
1861 1936 5.047235 AGGGAGTACAACTTTACACTGCTAG 60.047 44.000 0.00 0.00 30.89 3.42
1881 1960 2.500098 CAAGTAATTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
1882 1961 2.236395 ACAAGTAATTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
1883 1962 3.262420 CACAAGTAATTCCGGACAGAGG 58.738 50.000 1.83 0.00 0.00 3.69
1884 1963 2.673368 GCACAAGTAATTCCGGACAGAG 59.327 50.000 1.83 0.00 0.00 3.35
1885 1964 2.695359 GCACAAGTAATTCCGGACAGA 58.305 47.619 1.83 0.00 0.00 3.41
1886 1965 1.393539 CGCACAAGTAATTCCGGACAG 59.606 52.381 1.83 0.00 0.00 3.51
1887 1966 1.001068 TCGCACAAGTAATTCCGGACA 59.999 47.619 1.83 0.00 0.00 4.02
1888 1967 1.717194 TCGCACAAGTAATTCCGGAC 58.283 50.000 1.83 0.00 0.00 4.79
1889 1968 2.459060 TTCGCACAAGTAATTCCGGA 57.541 45.000 0.00 0.00 0.00 5.14
1890 1969 3.546002 TTTTCGCACAAGTAATTCCGG 57.454 42.857 0.00 0.00 0.00 5.14
1891 1970 3.851403 CCATTTTCGCACAAGTAATTCCG 59.149 43.478 0.00 0.00 0.00 4.30
1892 1971 5.054390 TCCATTTTCGCACAAGTAATTCC 57.946 39.130 0.00 0.00 0.00 3.01
1893 1972 8.682128 TTAATCCATTTTCGCACAAGTAATTC 57.318 30.769 0.00 0.00 0.00 2.17
1894 1973 9.482627 TTTTAATCCATTTTCGCACAAGTAATT 57.517 25.926 0.00 0.00 0.00 1.40
1895 1974 9.651913 ATTTTAATCCATTTTCGCACAAGTAAT 57.348 25.926 0.00 0.00 0.00 1.89
1896 1975 8.920665 CATTTTAATCCATTTTCGCACAAGTAA 58.079 29.630 0.00 0.00 0.00 2.24
1897 1976 8.300286 TCATTTTAATCCATTTTCGCACAAGTA 58.700 29.630 0.00 0.00 0.00 2.24
1898 1977 7.151308 TCATTTTAATCCATTTTCGCACAAGT 58.849 30.769 0.00 0.00 0.00 3.16
1899 1978 7.579589 TCATTTTAATCCATTTTCGCACAAG 57.420 32.000 0.00 0.00 0.00 3.16
1900 1979 7.953158 TTCATTTTAATCCATTTTCGCACAA 57.047 28.000 0.00 0.00 0.00 3.33
1901 1980 7.601886 ACATTCATTTTAATCCATTTTCGCACA 59.398 29.630 0.00 0.00 0.00 4.57
1902 1981 7.962917 ACATTCATTTTAATCCATTTTCGCAC 58.037 30.769 0.00 0.00 0.00 5.34
1903 1982 9.814899 ATACATTCATTTTAATCCATTTTCGCA 57.185 25.926 0.00 0.00 0.00 5.10
1942 2021 9.338622 TCTGAGAAATTGATGTATCTAGACGTA 57.661 33.333 0.00 0.00 0.00 3.57
1943 2022 8.132362 GTCTGAGAAATTGATGTATCTAGACGT 58.868 37.037 0.00 0.00 0.00 4.34
1944 2023 8.131731 TGTCTGAGAAATTGATGTATCTAGACG 58.868 37.037 0.00 0.00 31.98 4.18
1945 2024 9.809096 TTGTCTGAGAAATTGATGTATCTAGAC 57.191 33.333 0.00 0.00 0.00 2.59
1947 2026 9.814899 ACTTGTCTGAGAAATTGATGTATCTAG 57.185 33.333 0.00 0.00 0.00 2.43
1953 2032 9.512588 AGAAATACTTGTCTGAGAAATTGATGT 57.487 29.630 0.00 0.00 0.00 3.06
1954 2033 9.770503 CAGAAATACTTGTCTGAGAAATTGATG 57.229 33.333 0.00 0.00 43.32 3.07
1955 2034 8.954350 CCAGAAATACTTGTCTGAGAAATTGAT 58.046 33.333 2.28 0.00 43.32 2.57
1956 2035 8.156820 TCCAGAAATACTTGTCTGAGAAATTGA 58.843 33.333 2.28 0.00 43.32 2.57
1957 2036 8.233190 GTCCAGAAATACTTGTCTGAGAAATTG 58.767 37.037 2.28 0.00 43.32 2.32
1958 2037 7.118390 CGTCCAGAAATACTTGTCTGAGAAATT 59.882 37.037 2.28 0.00 43.32 1.82
1959 2038 6.591834 CGTCCAGAAATACTTGTCTGAGAAAT 59.408 38.462 2.28 0.00 43.32 2.17
1960 2039 5.926542 CGTCCAGAAATACTTGTCTGAGAAA 59.073 40.000 2.28 0.00 43.32 2.52
1961 2040 5.470368 CGTCCAGAAATACTTGTCTGAGAA 58.530 41.667 2.28 0.00 43.32 2.87
1962 2041 4.082190 CCGTCCAGAAATACTTGTCTGAGA 60.082 45.833 2.28 0.00 43.32 3.27
1963 2042 4.082190 TCCGTCCAGAAATACTTGTCTGAG 60.082 45.833 2.28 0.00 43.32 3.35
1964 2043 3.830178 TCCGTCCAGAAATACTTGTCTGA 59.170 43.478 2.28 0.00 43.32 3.27
1965 2044 4.177026 CTCCGTCCAGAAATACTTGTCTG 58.823 47.826 0.00 0.00 40.84 3.51
1966 2045 3.195825 CCTCCGTCCAGAAATACTTGTCT 59.804 47.826 0.00 0.00 0.00 3.41
1967 2046 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
1968 2047 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
1969 2048 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
1970 2049 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
1971 2050 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
1972 2051 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
1973 2052 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
1974 2053 2.108970 GTACTCCCTCCGTCCAGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
1975 2054 1.553706 GTACTCCCTCCGTCCAGAAA 58.446 55.000 0.00 0.00 0.00 2.52
1976 2055 0.324091 GGTACTCCCTCCGTCCAGAA 60.324 60.000 0.00 0.00 0.00 3.02
1977 2056 1.305623 GGTACTCCCTCCGTCCAGA 59.694 63.158 0.00 0.00 0.00 3.86
1978 2057 0.397254 ATGGTACTCCCTCCGTCCAG 60.397 60.000 0.00 0.00 0.00 3.86
1979 2058 0.042131 AATGGTACTCCCTCCGTCCA 59.958 55.000 0.00 0.00 0.00 4.02
1980 2059 2.077687 TAATGGTACTCCCTCCGTCC 57.922 55.000 0.00 0.00 0.00 4.79
1981 2060 5.075493 TCTAATAATGGTACTCCCTCCGTC 58.925 45.833 0.00 0.00 0.00 4.79
1982 2061 5.070823 TCTAATAATGGTACTCCCTCCGT 57.929 43.478 0.00 0.00 0.00 4.69
1983 2062 6.890814 ACTATCTAATAATGGTACTCCCTCCG 59.109 42.308 0.00 0.00 0.00 4.63
1984 2063 8.532819 CAACTATCTAATAATGGTACTCCCTCC 58.467 40.741 0.00 0.00 0.00 4.30
1985 2064 9.091220 ACAACTATCTAATAATGGTACTCCCTC 57.909 37.037 0.00 0.00 0.00 4.30
1986 2065 8.871125 CACAACTATCTAATAATGGTACTCCCT 58.129 37.037 0.00 0.00 0.00 4.20
1987 2066 8.648693 ACACAACTATCTAATAATGGTACTCCC 58.351 37.037 0.00 0.00 0.00 4.30
2002 2081 9.956720 CTCAAATTGAAAAGAACACAACTATCT 57.043 29.630 0.00 0.00 0.00 1.98
2003 2082 9.185192 CCTCAAATTGAAAAGAACACAACTATC 57.815 33.333 0.00 0.00 0.00 2.08
2004 2083 8.912988 TCCTCAAATTGAAAAGAACACAACTAT 58.087 29.630 0.00 0.00 0.00 2.12
2005 2084 8.287439 TCCTCAAATTGAAAAGAACACAACTA 57.713 30.769 0.00 0.00 0.00 2.24
2006 2085 7.122650 TCTCCTCAAATTGAAAAGAACACAACT 59.877 33.333 0.00 0.00 0.00 3.16
2007 2086 7.257722 TCTCCTCAAATTGAAAAGAACACAAC 58.742 34.615 0.00 0.00 0.00 3.32
2008 2087 7.403312 TCTCCTCAAATTGAAAAGAACACAA 57.597 32.000 0.00 0.00 0.00 3.33
2009 2088 7.403312 TTCTCCTCAAATTGAAAAGAACACA 57.597 32.000 12.77 0.00 28.25 3.72
2010 2089 7.759433 TGTTTCTCCTCAAATTGAAAAGAACAC 59.241 33.333 15.15 15.30 31.10 3.32
2011 2090 7.835822 TGTTTCTCCTCAAATTGAAAAGAACA 58.164 30.769 15.15 13.64 31.10 3.18
2012 2091 8.190784 TCTGTTTCTCCTCAAATTGAAAAGAAC 58.809 33.333 15.15 12.07 31.10 3.01
2013 2092 8.292444 TCTGTTTCTCCTCAAATTGAAAAGAA 57.708 30.769 12.77 12.77 30.11 2.52
2014 2093 7.557719 ACTCTGTTTCTCCTCAAATTGAAAAGA 59.442 33.333 0.00 0.26 31.47 2.52
2015 2094 7.710896 ACTCTGTTTCTCCTCAAATTGAAAAG 58.289 34.615 0.00 0.00 31.47 2.27
2016 2095 7.645058 ACTCTGTTTCTCCTCAAATTGAAAA 57.355 32.000 0.00 0.00 31.47 2.29
2017 2096 7.041098 GCTACTCTGTTTCTCCTCAAATTGAAA 60.041 37.037 0.00 0.00 0.00 2.69
2018 2097 6.428159 GCTACTCTGTTTCTCCTCAAATTGAA 59.572 38.462 0.00 0.00 0.00 2.69
2019 2098 5.934625 GCTACTCTGTTTCTCCTCAAATTGA 59.065 40.000 0.00 0.00 0.00 2.57
2020 2099 5.702670 TGCTACTCTGTTTCTCCTCAAATTG 59.297 40.000 0.00 0.00 0.00 2.32
2021 2100 5.869579 TGCTACTCTGTTTCTCCTCAAATT 58.130 37.500 0.00 0.00 0.00 1.82
2022 2101 5.489792 TGCTACTCTGTTTCTCCTCAAAT 57.510 39.130 0.00 0.00 0.00 2.32
2023 2102 4.955811 TGCTACTCTGTTTCTCCTCAAA 57.044 40.909 0.00 0.00 0.00 2.69
2024 2103 4.774726 AGATGCTACTCTGTTTCTCCTCAA 59.225 41.667 0.00 0.00 0.00 3.02
2025 2104 4.348486 AGATGCTACTCTGTTTCTCCTCA 58.652 43.478 0.00 0.00 0.00 3.86
2026 2105 5.108517 CAAGATGCTACTCTGTTTCTCCTC 58.891 45.833 0.00 0.00 0.00 3.71
2027 2106 4.530161 ACAAGATGCTACTCTGTTTCTCCT 59.470 41.667 0.00 0.00 0.00 3.69
2028 2107 4.826556 ACAAGATGCTACTCTGTTTCTCC 58.173 43.478 0.00 0.00 0.00 3.71
2029 2108 5.350091 GGAACAAGATGCTACTCTGTTTCTC 59.650 44.000 0.00 0.00 0.00 2.87
2030 2109 5.012561 AGGAACAAGATGCTACTCTGTTTCT 59.987 40.000 0.00 0.00 0.00 2.52
2031 2110 5.241662 AGGAACAAGATGCTACTCTGTTTC 58.758 41.667 0.00 0.00 0.00 2.78
2032 2111 5.234466 AGGAACAAGATGCTACTCTGTTT 57.766 39.130 0.00 0.00 0.00 2.83
2033 2112 4.899352 AGGAACAAGATGCTACTCTGTT 57.101 40.909 0.00 0.00 0.00 3.16
2034 2113 4.619394 CGAAGGAACAAGATGCTACTCTGT 60.619 45.833 0.00 0.00 0.00 3.41
2035 2114 3.862267 CGAAGGAACAAGATGCTACTCTG 59.138 47.826 0.00 0.00 0.00 3.35
2036 2115 3.511934 ACGAAGGAACAAGATGCTACTCT 59.488 43.478 0.00 0.00 0.00 3.24
2037 2116 3.851098 ACGAAGGAACAAGATGCTACTC 58.149 45.455 0.00 0.00 0.00 2.59
2038 2117 3.963428 ACGAAGGAACAAGATGCTACT 57.037 42.857 0.00 0.00 0.00 2.57
2039 2118 3.746492 ACAACGAAGGAACAAGATGCTAC 59.254 43.478 0.00 0.00 0.00 3.58
2065 2144 4.602340 ACCGGGAGCTTATAGTACAATG 57.398 45.455 6.32 0.00 0.00 2.82
2066 2145 5.129815 TCAAACCGGGAGCTTATAGTACAAT 59.870 40.000 6.32 0.00 0.00 2.71
2067 2146 4.467082 TCAAACCGGGAGCTTATAGTACAA 59.533 41.667 6.32 0.00 0.00 2.41
2069 2148 4.099113 ACTCAAACCGGGAGCTTATAGTAC 59.901 45.833 6.32 0.00 35.79 2.73
2101 2184 3.487372 GTGTAATAGGCAATCCCCTTCC 58.513 50.000 0.00 0.00 36.41 3.46
2103 2186 2.856231 TGGTGTAATAGGCAATCCCCTT 59.144 45.455 0.00 0.00 36.41 3.95
2123 2206 8.702438 GGCGATCAATTTGACCAATAATAATTG 58.298 33.333 0.15 0.00 41.90 2.32
2124 2207 8.641541 AGGCGATCAATTTGACCAATAATAATT 58.358 29.630 0.15 0.00 0.00 1.40
2125 2208 8.181904 AGGCGATCAATTTGACCAATAATAAT 57.818 30.769 0.15 0.00 0.00 1.28
2126 2209 7.581213 AGGCGATCAATTTGACCAATAATAA 57.419 32.000 0.15 0.00 0.00 1.40
2127 2210 7.502226 AGAAGGCGATCAATTTGACCAATAATA 59.498 33.333 0.15 0.00 0.00 0.98
2128 2211 6.322201 AGAAGGCGATCAATTTGACCAATAAT 59.678 34.615 0.15 0.00 0.00 1.28
2129 2212 5.652014 AGAAGGCGATCAATTTGACCAATAA 59.348 36.000 0.15 0.00 0.00 1.40
2130 2213 5.192927 AGAAGGCGATCAATTTGACCAATA 58.807 37.500 0.15 0.00 0.00 1.90
2131 2214 4.019174 AGAAGGCGATCAATTTGACCAAT 58.981 39.130 0.15 0.00 0.00 3.16
2132 2215 3.420893 AGAAGGCGATCAATTTGACCAA 58.579 40.909 0.15 0.00 0.00 3.67
2133 2216 3.071874 AGAAGGCGATCAATTTGACCA 57.928 42.857 0.15 0.00 0.00 4.02
2134 2217 3.181496 GGAAGAAGGCGATCAATTTGACC 60.181 47.826 0.15 0.00 0.00 4.02
2135 2218 3.691609 AGGAAGAAGGCGATCAATTTGAC 59.308 43.478 0.15 0.00 0.00 3.18
2136 2219 3.691118 CAGGAAGAAGGCGATCAATTTGA 59.309 43.478 0.75 0.75 0.00 2.69
2137 2220 3.691118 TCAGGAAGAAGGCGATCAATTTG 59.309 43.478 0.00 0.00 0.00 2.32
2138 2221 3.955471 TCAGGAAGAAGGCGATCAATTT 58.045 40.909 0.00 0.00 0.00 1.82
2139 2222 3.634397 TCAGGAAGAAGGCGATCAATT 57.366 42.857 0.00 0.00 0.00 2.32
2140 2223 3.853355 ATCAGGAAGAAGGCGATCAAT 57.147 42.857 0.00 0.00 0.00 2.57
2141 2224 3.634397 AATCAGGAAGAAGGCGATCAA 57.366 42.857 0.00 0.00 0.00 2.57
2142 2225 3.273434 CAAATCAGGAAGAAGGCGATCA 58.727 45.455 0.00 0.00 0.00 2.92
2143 2226 2.615912 CCAAATCAGGAAGAAGGCGATC 59.384 50.000 0.00 0.00 0.00 3.69
2144 2227 2.648059 CCAAATCAGGAAGAAGGCGAT 58.352 47.619 0.00 0.00 0.00 4.58
2172 2255 0.830444 AGGAACACACCGCCTACTCA 60.830 55.000 0.00 0.00 34.73 3.41
2180 2263 4.253685 ACTATGAATGAAGGAACACACCG 58.746 43.478 0.00 0.00 34.73 4.94
2208 2291 3.317993 AGAAACCGGGAATTTGACAAGTG 59.682 43.478 6.32 0.00 0.00 3.16
2209 2292 3.562182 AGAAACCGGGAATTTGACAAGT 58.438 40.909 6.32 0.00 0.00 3.16
2210 2293 4.760204 AGTAGAAACCGGGAATTTGACAAG 59.240 41.667 6.32 0.00 0.00 3.16
2218 2301 3.427573 CCCAAAAGTAGAAACCGGGAAT 58.572 45.455 6.32 0.00 33.83 3.01
2232 2320 0.673437 TCTTGCCTTTCGCCCAAAAG 59.327 50.000 0.00 0.00 36.24 2.27
2302 2390 3.047857 TGATATGGATTCCTGGAGTGCA 58.952 45.455 15.31 15.31 0.00 4.57
2303 2391 3.777106 TGATATGGATTCCTGGAGTGC 57.223 47.619 3.70 3.70 0.00 4.40
2304 2392 8.874744 AATATTTGATATGGATTCCTGGAGTG 57.125 34.615 3.95 0.00 0.00 3.51
2305 2393 9.887862 AAAATATTTGATATGGATTCCTGGAGT 57.112 29.630 0.39 0.00 0.00 3.85
2364 2452 3.313249 CACAAGCTGTCAATCAACAGTGA 59.687 43.478 0.00 0.00 46.77 3.41
2373 2461 4.617530 GCATCATTGTCACAAGCTGTCAAT 60.618 41.667 0.00 0.00 38.65 2.57
2380 2468 3.369756 CCAAATGCATCATTGTCACAAGC 59.630 43.478 0.00 0.00 34.04 4.01
2385 2473 2.164017 CCGTCCAAATGCATCATTGTCA 59.836 45.455 0.00 0.00 34.04 3.58
2388 2476 1.135527 AGCCGTCCAAATGCATCATTG 59.864 47.619 0.00 1.34 34.04 2.82
2397 2485 0.314935 CACTTGCAAGCCGTCCAAAT 59.685 50.000 26.27 0.04 0.00 2.32
2435 2523 5.008613 TGTCCGTTCTTTCTCCATTTTTCTG 59.991 40.000 0.00 0.00 0.00 3.02
2439 2527 4.037565 GGTTGTCCGTTCTTTCTCCATTTT 59.962 41.667 0.00 0.00 0.00 1.82
2443 2531 1.487142 TGGTTGTCCGTTCTTTCTCCA 59.513 47.619 0.00 0.00 36.30 3.86
2463 2551 2.616960 TCGTTCTTGCGTGCATAATCT 58.383 42.857 0.00 0.00 0.00 2.40
2472 2560 0.802994 TGTGTCGTTCGTTCTTGCGT 60.803 50.000 0.00 0.00 0.00 5.24
2511 2599 2.069273 GAACTTTAGCGAGCAGAGCAA 58.931 47.619 0.00 0.00 37.01 3.91
2517 2605 3.120199 GCTGAATTGAACTTTAGCGAGCA 60.120 43.478 0.00 0.00 29.59 4.26
2528 2616 5.105635 TGGAATTGATGGAGCTGAATTGAAC 60.106 40.000 0.00 0.00 0.00 3.18
2533 2621 4.246712 AGTGGAATTGATGGAGCTGAAT 57.753 40.909 0.00 0.00 0.00 2.57
2544 2632 2.610976 GCATGCTGCAAAGTGGAATTGA 60.611 45.455 11.37 0.00 44.26 2.57
2545 2633 1.730064 GCATGCTGCAAAGTGGAATTG 59.270 47.619 11.37 0.00 44.26 2.32
2547 2635 3.826637 GCATGCTGCAAAGTGGAAT 57.173 47.368 11.37 0.00 44.26 3.01
2558 2646 1.674441 CTATGGTGGAGTTGCATGCTG 59.326 52.381 20.33 0.00 0.00 4.41
2562 2650 4.413520 ACCTAATCTATGGTGGAGTTGCAT 59.586 41.667 0.00 0.00 34.90 3.96
2573 2661 6.000219 CCAAACAGGATCACCTAATCTATGG 59.000 44.000 0.00 0.00 45.94 2.74
2592 2680 4.271291 GTCGGATCTAGCTGAAATCCAAAC 59.729 45.833 18.44 13.46 39.16 2.93
2598 2686 5.127845 TCTTGAAGTCGGATCTAGCTGAAAT 59.872 40.000 0.00 0.00 0.00 2.17
2600 2688 4.017126 TCTTGAAGTCGGATCTAGCTGAA 58.983 43.478 0.00 0.00 0.00 3.02
2602 2690 4.377839 TTCTTGAAGTCGGATCTAGCTG 57.622 45.455 0.00 0.00 0.00 4.24
2646 2734 7.228314 TCTAAAATATCCAGGGACACGATAG 57.772 40.000 0.00 0.00 46.19 2.08
2655 2744 7.568199 AAACATCGTTCTAAAATATCCAGGG 57.432 36.000 0.00 0.00 0.00 4.45
2656 2745 8.673711 TCAAAACATCGTTCTAAAATATCCAGG 58.326 33.333 0.00 0.00 0.00 4.45
2657 2746 9.490663 GTCAAAACATCGTTCTAAAATATCCAG 57.509 33.333 0.00 0.00 0.00 3.86
2663 2752 7.960738 CCATACGTCAAAACATCGTTCTAAAAT 59.039 33.333 0.00 0.00 38.69 1.82
2670 2759 5.007823 TCAAACCATACGTCAAAACATCGTT 59.992 36.000 0.00 0.00 38.69 3.85
2687 2776 4.140536 TCATGCATACAACACTCAAACCA 58.859 39.130 0.00 0.00 0.00 3.67
2688 2777 4.764679 TCATGCATACAACACTCAAACC 57.235 40.909 0.00 0.00 0.00 3.27
2690 2779 8.334632 CGTATATTCATGCATACAACACTCAAA 58.665 33.333 0.00 0.00 0.00 2.69
2694 2783 7.254761 CCAACGTATATTCATGCATACAACACT 60.255 37.037 0.00 0.00 0.00 3.55
2703 2792 8.898761 ACTTTTAATCCAACGTATATTCATGCA 58.101 29.630 0.00 0.00 0.00 3.96
2841 2930 9.927668 CTTTGGACATCATGTAAACCTTTTAAT 57.072 29.630 0.00 0.00 0.00 1.40
2842 2931 9.137459 TCTTTGGACATCATGTAAACCTTTTAA 57.863 29.630 0.00 0.00 0.00 1.52
2843 2932 8.698973 TCTTTGGACATCATGTAAACCTTTTA 57.301 30.769 0.00 0.00 0.00 1.52
2844 2933 7.595819 TCTTTGGACATCATGTAAACCTTTT 57.404 32.000 0.00 0.00 0.00 2.27
2845 2934 7.595819 TTCTTTGGACATCATGTAAACCTTT 57.404 32.000 0.00 0.00 0.00 3.11
2846 2935 7.781324 ATTCTTTGGACATCATGTAAACCTT 57.219 32.000 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.