Multiple sequence alignment - TraesCS5B01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G311200 chr5B 100.000 2684 0 0 1 2684 492821187 492818504 0.000000e+00 4957.0
1 TraesCS5B01G311200 chr5B 87.050 834 78 17 995 1807 493125401 493124577 0.000000e+00 915.0
2 TraesCS5B01G311200 chr5B 86.056 710 58 13 995 1694 493286629 493285951 0.000000e+00 725.0
3 TraesCS5B01G311200 chr5B 80.789 380 52 9 1074 1450 493086666 493086305 7.320000e-71 278.0
4 TraesCS5B01G311200 chr5B 93.103 116 8 0 852 967 118534300 118534185 1.280000e-38 171.0
5 TraesCS5B01G311200 chr5B 88.806 134 11 4 840 971 198956960 198957091 7.690000e-36 161.0
6 TraesCS5B01G311200 chr5B 85.047 107 9 6 1875 1976 659093897 659094001 4.730000e-18 102.0
7 TraesCS5B01G311200 chr5D 95.824 886 26 3 966 1840 410607175 410606290 0.000000e+00 1421.0
8 TraesCS5B01G311200 chr5D 87.442 868 77 19 995 1840 410638243 410637386 0.000000e+00 970.0
9 TraesCS5B01G311200 chr5D 84.460 843 71 27 995 1809 410874226 410873416 0.000000e+00 776.0
10 TraesCS5B01G311200 chr5D 92.872 491 19 7 350 838 410607685 410607209 0.000000e+00 699.0
11 TraesCS5B01G311200 chr5D 88.498 426 29 12 2274 2684 410606259 410605839 5.160000e-137 497.0
12 TraesCS5B01G311200 chr5D 84.674 261 18 6 1 261 410608425 410608187 9.600000e-60 241.0
13 TraesCS5B01G311200 chr5D 81.928 166 25 5 1512 1676 410620974 410621135 4.660000e-28 135.0
14 TraesCS5B01G311200 chr5D 100.000 29 0 0 1840 1868 410606310 410606282 1.000000e-03 54.7
15 TraesCS5B01G311200 chr5A 94.038 889 39 5 966 1840 522124653 522123765 0.000000e+00 1336.0
16 TraesCS5B01G311200 chr5A 87.442 860 79 18 1000 1840 522357654 522356805 0.000000e+00 963.0
17 TraesCS5B01G311200 chr5A 92.308 572 27 8 268 838 522125235 522124680 0.000000e+00 797.0
18 TraesCS5B01G311200 chr5A 83.531 844 78 28 995 1809 522868831 522868020 0.000000e+00 732.0
19 TraesCS5B01G311200 chr5A 86.742 264 34 1 1 264 522125540 522125278 2.610000e-75 292.0
20 TraesCS5B01G311200 chr5A 90.123 162 15 1 2067 2228 555349508 555349348 2.710000e-50 209.0
21 TraesCS5B01G311200 chr5A 78.723 235 23 13 2354 2582 522114210 522113997 6.030000e-27 132.0
22 TraesCS5B01G311200 chr1B 78.548 620 88 26 1060 1661 562433800 562433208 1.520000e-97 366.0
23 TraesCS5B01G311200 chr6A 89.634 164 16 1 2067 2229 76520838 76520675 9.740000e-50 207.0
24 TraesCS5B01G311200 chr6A 87.778 90 8 2 1890 1976 534749772 534749683 4.730000e-18 102.0
25 TraesCS5B01G311200 chr3D 90.062 161 15 1 2067 2226 83428636 83428796 9.740000e-50 207.0
26 TraesCS5B01G311200 chr3D 85.714 98 8 4 1869 1962 359861272 359861367 6.120000e-17 99.0
27 TraesCS5B01G311200 chr3D 86.813 91 8 3 1890 1976 523190902 523190812 6.120000e-17 99.0
28 TraesCS5B01G311200 chrUn 89.506 162 16 1 2067 2227 108799337 108799498 1.260000e-48 204.0
29 TraesCS5B01G311200 chrUn 89.441 161 15 2 2067 2226 68758179 68758338 4.530000e-48 202.0
30 TraesCS5B01G311200 chrUn 90.385 104 10 0 7 110 361572219 361572322 1.300000e-28 137.0
31 TraesCS5B01G311200 chrUn 90.385 104 10 0 7 110 423864692 423864589 1.300000e-28 137.0
32 TraesCS5B01G311200 chrUn 86.408 103 10 3 1982 2081 8484350 8484451 2.830000e-20 110.0
33 TraesCS5B01G311200 chrUn 92.105 76 6 0 1901 1976 336902519 336902444 1.020000e-19 108.0
34 TraesCS5B01G311200 chr2A 89.506 162 16 1 2067 2227 777318105 777318266 1.260000e-48 204.0
35 TraesCS5B01G311200 chr2A 93.421 76 5 0 1901 1976 145439531 145439606 2.180000e-21 113.0
36 TraesCS5B01G311200 chr1A 89.506 162 16 1 2067 2227 377423728 377423889 1.260000e-48 204.0
37 TraesCS5B01G311200 chr1A 91.453 117 10 0 852 968 213289507 213289391 7.690000e-36 161.0
38 TraesCS5B01G311200 chr3A 89.441 161 16 1 2067 2226 75593243 75593403 4.530000e-48 202.0
39 TraesCS5B01G311200 chr3A 90.000 130 11 2 840 968 473084880 473085008 1.650000e-37 167.0
40 TraesCS5B01G311200 chr3A 87.681 138 15 2 839 975 38671247 38671383 2.770000e-35 159.0
41 TraesCS5B01G311200 chr3A 84.112 107 11 5 1861 1962 497615558 497615663 6.120000e-17 99.0
42 TraesCS5B01G311200 chr7B 89.441 161 14 2 2067 2226 444171732 444171574 1.630000e-47 200.0
43 TraesCS5B01G311200 chr2D 92.500 120 9 0 852 971 500648605 500648486 3.550000e-39 172.0
44 TraesCS5B01G311200 chr3B 92.308 117 9 0 852 968 493648675 493648791 1.650000e-37 167.0
45 TraesCS5B01G311200 chr3B 90.385 104 10 0 7 110 826446085 826446188 1.300000e-28 137.0
46 TraesCS5B01G311200 chr3B 90.385 104 10 0 7 110 826507018 826507121 1.300000e-28 137.0
47 TraesCS5B01G311200 chr3B 89.691 97 7 2 1982 2075 629921384 629921480 1.310000e-23 121.0
48 TraesCS5B01G311200 chr3B 86.667 105 10 3 1969 2070 719044010 719044113 2.180000e-21 113.0
49 TraesCS5B01G311200 chr6B 89.231 130 12 2 840 968 445884231 445884359 7.690000e-36 161.0
50 TraesCS5B01G311200 chr6B 86.408 103 11 2 1973 2072 717148934 717149036 2.830000e-20 110.0
51 TraesCS5B01G311200 chr4A 90.756 119 11 0 852 970 726659558 726659440 2.770000e-35 159.0
52 TraesCS5B01G311200 chr4A 85.455 110 12 3 1971 2077 665186405 665186513 7.850000e-21 111.0
53 TraesCS5B01G311200 chr4A 82.407 108 17 2 1871 1976 737204151 737204044 2.850000e-15 93.5
54 TraesCS5B01G311200 chr7D 76.976 291 45 11 1056 1345 27453185 27453454 2.150000e-31 147.0
55 TraesCS5B01G311200 chr7D 88.073 109 13 0 1 109 10811952 10812060 2.170000e-26 130.0
56 TraesCS5B01G311200 chr6D 93.258 89 6 0 18 106 85102854 85102766 6.030000e-27 132.0
57 TraesCS5B01G311200 chr6D 83.193 119 16 3 1954 2068 466538110 466538228 3.650000e-19 106.0
58 TraesCS5B01G311200 chr7A 86.239 109 15 0 3 111 629469911 629469803 4.690000e-23 119.0
59 TraesCS5B01G311200 chr4B 88.660 97 8 2 1982 2075 499586401 499586497 6.070000e-22 115.0
60 TraesCS5B01G311200 chr4B 86.538 104 10 3 1973 2073 373996213 373996315 7.850000e-21 111.0
61 TraesCS5B01G311200 chr2B 85.981 107 11 3 1970 2073 372955296 372955401 7.850000e-21 111.0
62 TraesCS5B01G311200 chr4D 87.778 90 8 2 1890 1976 168061546 168061635 4.730000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G311200 chr5B 492818504 492821187 2683 True 4957.000000 4957 100.000000 1 2684 1 chr5B.!!$R2 2683
1 TraesCS5B01G311200 chr5B 493124577 493125401 824 True 915.000000 915 87.050000 995 1807 1 chr5B.!!$R4 812
2 TraesCS5B01G311200 chr5B 493285951 493286629 678 True 725.000000 725 86.056000 995 1694 1 chr5B.!!$R5 699
3 TraesCS5B01G311200 chr5D 410637386 410638243 857 True 970.000000 970 87.442000 995 1840 1 chr5D.!!$R1 845
4 TraesCS5B01G311200 chr5D 410873416 410874226 810 True 776.000000 776 84.460000 995 1809 1 chr5D.!!$R2 814
5 TraesCS5B01G311200 chr5D 410605839 410608425 2586 True 582.540000 1421 92.373600 1 2684 5 chr5D.!!$R3 2683
6 TraesCS5B01G311200 chr5A 522356805 522357654 849 True 963.000000 963 87.442000 1000 1840 1 chr5A.!!$R2 840
7 TraesCS5B01G311200 chr5A 522123765 522125540 1775 True 808.333333 1336 91.029333 1 1840 3 chr5A.!!$R5 1839
8 TraesCS5B01G311200 chr5A 522868020 522868831 811 True 732.000000 732 83.531000 995 1809 1 chr5A.!!$R3 814
9 TraesCS5B01G311200 chr1B 562433208 562433800 592 True 366.000000 366 78.548000 1060 1661 1 chr1B.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 241 0.112412 GGGGTGGTGACTGGAAACAT 59.888 55.0 0.0 0.0 41.51 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 2723 0.10462 ACAGTGTGGGGGTACTTCCT 60.105 55.0 0.0 0.0 36.25 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.974645 TCCAGTTAATAGGCCGATTCAT 57.025 40.909 14.98 0.00 0.00 2.57
92 93 1.140407 GCGAGCAGCTACCAGTTACG 61.140 60.000 0.00 0.00 44.04 3.18
118 119 1.303236 TCAACATTGGGGAGCACCG 60.303 57.895 0.00 0.00 41.60 4.94
154 176 3.170672 CCGGGATGGCCAGATCCA 61.171 66.667 23.85 0.00 43.51 3.41
155 177 2.756042 CCGGGATGGCCAGATCCAA 61.756 63.158 23.85 0.00 43.51 3.53
156 178 1.457604 CGGGATGGCCAGATCCAAT 59.542 57.895 23.85 0.00 43.51 3.16
157 179 0.892358 CGGGATGGCCAGATCCAATG 60.892 60.000 23.85 11.27 43.51 2.82
158 180 0.479815 GGGATGGCCAGATCCAATGA 59.520 55.000 23.85 0.00 43.51 2.57
159 181 1.613836 GGATGGCCAGATCCAATGAC 58.386 55.000 18.89 0.00 41.59 3.06
160 182 1.613836 GATGGCCAGATCCAATGACC 58.386 55.000 13.05 0.00 39.96 4.02
161 183 1.144503 GATGGCCAGATCCAATGACCT 59.855 52.381 13.05 0.00 39.96 3.85
162 184 0.256752 TGGCCAGATCCAATGACCTG 59.743 55.000 0.00 0.00 32.18 4.00
163 185 1.105759 GGCCAGATCCAATGACCTGC 61.106 60.000 0.00 0.00 0.00 4.85
164 186 1.105759 GCCAGATCCAATGACCTGCC 61.106 60.000 0.00 0.00 0.00 4.85
165 187 0.466922 CCAGATCCAATGACCTGCCC 60.467 60.000 0.00 0.00 0.00 5.36
166 188 0.816825 CAGATCCAATGACCTGCCCG 60.817 60.000 0.00 0.00 0.00 6.13
167 189 2.124151 ATCCAATGACCTGCCCGC 60.124 61.111 0.00 0.00 0.00 6.13
168 190 3.721370 ATCCAATGACCTGCCCGCC 62.721 63.158 0.00 0.00 0.00 6.13
219 241 0.112412 GGGGTGGTGACTGGAAACAT 59.888 55.000 0.00 0.00 41.51 2.71
234 256 1.455822 AACATGGGGTTGGAGAGGAA 58.544 50.000 0.00 0.00 38.60 3.36
240 262 0.845102 GGGTTGGAGAGGAAAGGGGA 60.845 60.000 0.00 0.00 0.00 4.81
245 267 0.913205 GGAGAGGAAAGGGGAAGGAC 59.087 60.000 0.00 0.00 0.00 3.85
246 268 1.657804 GAGAGGAAAGGGGAAGGACA 58.342 55.000 0.00 0.00 0.00 4.02
314 375 4.034510 GGAAGACTCGAATGCTATGGTTTG 59.965 45.833 0.00 0.00 0.00 2.93
321 382 2.897271 ATGCTATGGTTTGTGGTCCA 57.103 45.000 0.00 0.00 38.14 4.02
332 393 3.851128 TGGTCCACGTTGTCGCCA 61.851 61.111 0.00 0.00 41.18 5.69
381 820 3.792956 CGATTTGTCATATTGGCAAGTGC 59.207 43.478 5.96 0.00 43.41 4.40
402 841 5.925969 GTGCATTGCAGTTTTTAATACCTGT 59.074 36.000 12.53 0.00 40.08 4.00
492 931 8.049655 AGAAAAAGATGCAGGATAGAACTTTC 57.950 34.615 0.00 0.00 0.00 2.62
499 938 3.181516 GCAGGATAGAACTTTCGCACAAG 60.182 47.826 0.00 0.00 0.00 3.16
500 939 3.003480 AGGATAGAACTTTCGCACAAGC 58.997 45.455 0.00 0.00 37.42 4.01
501 940 2.742053 GGATAGAACTTTCGCACAAGCA 59.258 45.455 0.00 0.00 42.27 3.91
502 941 3.375299 GGATAGAACTTTCGCACAAGCAT 59.625 43.478 0.00 0.00 42.27 3.79
569 1008 3.855379 CACCGCAATGAGATTTCATGTTG 59.145 43.478 0.00 0.00 43.20 3.33
586 1025 9.585369 TTTCATGTTGATGCCATAAATAGGATA 57.415 29.630 0.00 0.00 0.00 2.59
610 1049 5.045869 AGGACGATCCAGGTCTTTGATTTAA 60.046 40.000 6.78 0.00 39.61 1.52
611 1050 5.823045 GGACGATCCAGGTCTTTGATTTAAT 59.177 40.000 0.00 0.00 36.28 1.40
612 1051 6.990349 GGACGATCCAGGTCTTTGATTTAATA 59.010 38.462 0.00 0.00 36.28 0.98
680 1119 5.011451 GCGTGTAGCTCTGCAATATAAAG 57.989 43.478 0.00 0.00 44.04 1.85
683 1122 5.980116 CGTGTAGCTCTGCAATATAAAGAGT 59.020 40.000 0.00 2.58 39.72 3.24
684 1123 7.139392 CGTGTAGCTCTGCAATATAAAGAGTA 58.861 38.462 0.00 1.92 39.72 2.59
685 1124 7.113684 CGTGTAGCTCTGCAATATAAAGAGTAC 59.886 40.741 0.00 10.29 39.72 2.73
686 1125 8.138712 GTGTAGCTCTGCAATATAAAGAGTACT 58.861 37.037 0.00 0.00 39.72 2.73
687 1126 9.350951 TGTAGCTCTGCAATATAAAGAGTACTA 57.649 33.333 0.00 3.50 39.72 1.82
688 1127 9.615295 GTAGCTCTGCAATATAAAGAGTACTAC 57.385 37.037 0.00 9.34 39.72 2.73
689 1128 8.472007 AGCTCTGCAATATAAAGAGTACTACT 57.528 34.615 0.00 0.00 39.72 2.57
735 1174 4.468095 GTACATGTTGATAATGGACGCC 57.532 45.455 2.30 0.00 29.47 5.68
829 1268 1.836166 CATCCTCCTCTCAAGCTCCAA 59.164 52.381 0.00 0.00 0.00 3.53
852 1297 2.726351 GCTCACTAGCTCCGGCCTT 61.726 63.158 0.00 0.00 45.85 4.35
854 1299 2.022240 CTCACTAGCTCCGGCCTTCC 62.022 65.000 0.00 0.00 39.73 3.46
855 1300 2.764547 ACTAGCTCCGGCCTTCCC 60.765 66.667 0.00 0.00 39.73 3.97
857 1302 2.040884 TAGCTCCGGCCTTCCCAT 60.041 61.111 0.00 0.00 39.73 4.00
858 1303 1.692749 TAGCTCCGGCCTTCCCATT 60.693 57.895 0.00 0.00 39.73 3.16
859 1304 1.279025 TAGCTCCGGCCTTCCCATTT 61.279 55.000 0.00 0.00 39.73 2.32
862 1307 0.546598 CTCCGGCCTTCCCATTTACT 59.453 55.000 0.00 0.00 0.00 2.24
863 1308 0.996583 TCCGGCCTTCCCATTTACTT 59.003 50.000 0.00 0.00 0.00 2.24
864 1309 1.102978 CCGGCCTTCCCATTTACTTG 58.897 55.000 0.00 0.00 0.00 3.16
865 1310 1.615919 CCGGCCTTCCCATTTACTTGT 60.616 52.381 0.00 0.00 0.00 3.16
866 1311 1.743394 CGGCCTTCCCATTTACTTGTC 59.257 52.381 0.00 0.00 0.00 3.18
867 1312 2.618045 CGGCCTTCCCATTTACTTGTCT 60.618 50.000 0.00 0.00 0.00 3.41
868 1313 3.431415 GGCCTTCCCATTTACTTGTCTT 58.569 45.455 0.00 0.00 0.00 3.01
869 1314 3.193479 GGCCTTCCCATTTACTTGTCTTG 59.807 47.826 0.00 0.00 0.00 3.02
870 1315 3.193479 GCCTTCCCATTTACTTGTCTTGG 59.807 47.826 0.00 0.00 0.00 3.61
871 1316 4.662278 CCTTCCCATTTACTTGTCTTGGA 58.338 43.478 0.00 0.00 0.00 3.53
872 1317 5.264395 CCTTCCCATTTACTTGTCTTGGAT 58.736 41.667 0.00 0.00 0.00 3.41
873 1318 5.716703 CCTTCCCATTTACTTGTCTTGGATT 59.283 40.000 0.00 0.00 0.00 3.01
874 1319 6.211384 CCTTCCCATTTACTTGTCTTGGATTT 59.789 38.462 0.00 0.00 0.00 2.17
875 1320 6.588719 TCCCATTTACTTGTCTTGGATTTG 57.411 37.500 0.00 0.00 0.00 2.32
876 1321 6.074648 TCCCATTTACTTGTCTTGGATTTGT 58.925 36.000 0.00 0.00 0.00 2.83
877 1322 6.015519 TCCCATTTACTTGTCTTGGATTTGTG 60.016 38.462 0.00 0.00 0.00 3.33
878 1323 6.239289 CCCATTTACTTGTCTTGGATTTGTGT 60.239 38.462 0.00 0.00 0.00 3.72
879 1324 7.040062 CCCATTTACTTGTCTTGGATTTGTGTA 60.040 37.037 0.00 0.00 0.00 2.90
880 1325 8.023128 CCATTTACTTGTCTTGGATTTGTGTAG 58.977 37.037 0.00 0.00 0.00 2.74
881 1326 8.783093 CATTTACTTGTCTTGGATTTGTGTAGA 58.217 33.333 0.00 0.00 0.00 2.59
882 1327 8.918202 TTTACTTGTCTTGGATTTGTGTAGAT 57.082 30.769 0.00 0.00 0.00 1.98
884 1329 7.907214 ACTTGTCTTGGATTTGTGTAGATAC 57.093 36.000 0.00 0.00 0.00 2.24
885 1330 7.450074 ACTTGTCTTGGATTTGTGTAGATACA 58.550 34.615 0.00 0.00 0.00 2.29
886 1331 7.936847 ACTTGTCTTGGATTTGTGTAGATACAA 59.063 33.333 0.00 0.00 38.04 2.41
887 1332 8.862325 TTGTCTTGGATTTGTGTAGATACAAT 57.138 30.769 0.00 0.00 40.00 2.71
888 1333 8.862325 TGTCTTGGATTTGTGTAGATACAATT 57.138 30.769 0.00 0.00 40.00 2.32
889 1334 8.729756 TGTCTTGGATTTGTGTAGATACAATTG 58.270 33.333 3.24 3.24 40.00 2.32
890 1335 8.730680 GTCTTGGATTTGTGTAGATACAATTGT 58.269 33.333 16.68 16.68 40.00 2.71
891 1336 9.952030 TCTTGGATTTGTGTAGATACAATTGTA 57.048 29.630 20.14 20.14 40.00 2.41
914 1359 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
918 1363 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
921 1366 9.757227 AGACTCATTTTAGTGCTAGATACATTC 57.243 33.333 0.00 0.00 0.00 2.67
922 1367 9.534565 GACTCATTTTAGTGCTAGATACATTCA 57.465 33.333 0.00 0.00 0.00 2.57
953 1398 8.354011 AGACAAATCTAAGACGAATAATTCGG 57.646 34.615 0.00 0.00 45.12 4.30
954 1399 8.195436 AGACAAATCTAAGACGAATAATTCGGA 58.805 33.333 0.00 0.00 45.12 4.55
1200 1648 2.342279 GTGTGGGTGTGCGAGCTA 59.658 61.111 0.00 0.00 0.00 3.32
1384 1832 4.367023 CGGCCGGGTCGTTCAAGA 62.367 66.667 20.10 0.00 0.00 3.02
1445 1893 2.177594 CTCAAGGCGTTCCAGGAGCT 62.178 60.000 1.28 0.00 31.23 4.09
1450 1898 2.345244 CGTTCCAGGAGCTGCAGT 59.655 61.111 16.64 1.59 0.00 4.40
1713 2193 5.413213 CGGATTTGGATGTGTAAGGTTGTAA 59.587 40.000 0.00 0.00 0.00 2.41
1887 2392 8.783093 TCAATAATTTAAATAGTGCTCCATCCG 58.217 33.333 0.01 0.00 0.00 4.18
1888 2393 7.687941 ATAATTTAAATAGTGCTCCATCCGG 57.312 36.000 0.01 0.00 0.00 5.14
1889 2394 3.485463 TTAAATAGTGCTCCATCCGGG 57.515 47.619 0.00 0.00 38.37 5.73
1890 2395 1.213296 AAATAGTGCTCCATCCGGGT 58.787 50.000 0.00 0.00 38.11 5.28
1891 2396 1.213296 AATAGTGCTCCATCCGGGTT 58.787 50.000 0.00 0.00 38.11 4.11
1892 2397 1.213296 ATAGTGCTCCATCCGGGTTT 58.787 50.000 0.00 0.00 38.11 3.27
1893 2398 0.988832 TAGTGCTCCATCCGGGTTTT 59.011 50.000 0.00 0.00 38.11 2.43
1894 2399 0.112412 AGTGCTCCATCCGGGTTTTT 59.888 50.000 0.00 0.00 38.11 1.94
1925 2430 8.296713 TCATATAAGTTTTGGTCAAAGTCAAGC 58.703 33.333 0.00 0.00 0.00 4.01
1926 2431 6.715347 ATAAGTTTTGGTCAAAGTCAAGCT 57.285 33.333 0.00 0.00 0.00 3.74
1927 2432 5.405935 AAGTTTTGGTCAAAGTCAAGCTT 57.594 34.783 0.00 0.00 39.52 3.74
2000 2505 8.402326 ACTTTTTCCGTTTCAAAATAAGTGTC 57.598 30.769 0.00 0.00 0.00 3.67
2001 2506 8.248253 ACTTTTTCCGTTTCAAAATAAGTGTCT 58.752 29.630 0.00 0.00 0.00 3.41
2002 2507 8.623310 TTTTTCCGTTTCAAAATAAGTGTCTC 57.377 30.769 0.00 0.00 0.00 3.36
2003 2508 6.928979 TTCCGTTTCAAAATAAGTGTCTCA 57.071 33.333 0.00 0.00 0.00 3.27
2004 2509 6.928979 TCCGTTTCAAAATAAGTGTCTCAA 57.071 33.333 0.00 0.00 0.00 3.02
2005 2510 7.504924 TCCGTTTCAAAATAAGTGTCTCAAT 57.495 32.000 0.00 0.00 0.00 2.57
2006 2511 7.936584 TCCGTTTCAAAATAAGTGTCTCAATT 58.063 30.769 0.00 0.00 0.00 2.32
2007 2512 8.410141 TCCGTTTCAAAATAAGTGTCTCAATTT 58.590 29.630 0.00 0.00 0.00 1.82
2008 2513 9.030301 CCGTTTCAAAATAAGTGTCTCAATTTT 57.970 29.630 0.00 0.00 33.07 1.82
2019 2524 7.674471 AGTGTCTCAATTTTTAACTAGCTCC 57.326 36.000 0.00 0.00 0.00 4.70
2020 2525 7.224297 AGTGTCTCAATTTTTAACTAGCTCCA 58.776 34.615 0.00 0.00 0.00 3.86
2021 2526 7.389053 AGTGTCTCAATTTTTAACTAGCTCCAG 59.611 37.037 0.00 0.00 0.00 3.86
2022 2527 7.173390 GTGTCTCAATTTTTAACTAGCTCCAGT 59.827 37.037 0.00 0.00 0.00 4.00
2023 2528 8.372459 TGTCTCAATTTTTAACTAGCTCCAGTA 58.628 33.333 0.00 0.00 0.00 2.74
2024 2529 8.657729 GTCTCAATTTTTAACTAGCTCCAGTAC 58.342 37.037 0.00 0.00 0.00 2.73
2025 2530 8.372459 TCTCAATTTTTAACTAGCTCCAGTACA 58.628 33.333 0.00 0.00 0.00 2.90
2026 2531 9.167311 CTCAATTTTTAACTAGCTCCAGTACAT 57.833 33.333 0.00 0.00 0.00 2.29
2027 2532 9.515226 TCAATTTTTAACTAGCTCCAGTACATT 57.485 29.630 0.00 0.00 0.00 2.71
2030 2535 8.685838 TTTTTAACTAGCTCCAGTACATTTGT 57.314 30.769 0.00 0.00 0.00 2.83
2031 2536 9.781633 TTTTTAACTAGCTCCAGTACATTTGTA 57.218 29.630 0.00 0.00 0.00 2.41
2044 2549 6.854496 GTACATTTGTACCAGTTCAAGACA 57.146 37.500 9.27 0.00 43.73 3.41
2045 2550 5.751243 ACATTTGTACCAGTTCAAGACAC 57.249 39.130 0.00 0.00 0.00 3.67
2046 2551 5.437060 ACATTTGTACCAGTTCAAGACACT 58.563 37.500 0.00 0.00 0.00 3.55
2047 2552 5.885912 ACATTTGTACCAGTTCAAGACACTT 59.114 36.000 0.00 0.00 0.00 3.16
2048 2553 7.051623 ACATTTGTACCAGTTCAAGACACTTA 58.948 34.615 0.00 0.00 0.00 2.24
2049 2554 7.719633 ACATTTGTACCAGTTCAAGACACTTAT 59.280 33.333 0.00 0.00 0.00 1.73
2050 2555 8.567948 CATTTGTACCAGTTCAAGACACTTATT 58.432 33.333 0.00 0.00 0.00 1.40
2051 2556 8.514330 TTTGTACCAGTTCAAGACACTTATTT 57.486 30.769 0.00 0.00 0.00 1.40
2052 2557 8.514330 TTGTACCAGTTCAAGACACTTATTTT 57.486 30.769 0.00 0.00 0.00 1.82
2053 2558 7.925993 TGTACCAGTTCAAGACACTTATTTTG 58.074 34.615 0.00 0.00 0.00 2.44
2054 2559 6.391227 ACCAGTTCAAGACACTTATTTTGG 57.609 37.500 0.00 0.00 0.00 3.28
2055 2560 5.301805 ACCAGTTCAAGACACTTATTTTGGG 59.698 40.000 0.00 0.00 0.00 4.12
2056 2561 5.534654 CCAGTTCAAGACACTTATTTTGGGA 59.465 40.000 0.00 0.00 0.00 4.37
2057 2562 6.438763 CAGTTCAAGACACTTATTTTGGGAC 58.561 40.000 0.00 0.00 0.00 4.46
2058 2563 5.238650 AGTTCAAGACACTTATTTTGGGACG 59.761 40.000 0.00 0.00 0.00 4.79
2059 2564 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2060 2565 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2061 2566 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2062 2567 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2063 2568 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2064 2569 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2065 2570 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2066 2571 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2067 2572 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2068 2573 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2069 2574 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
2070 2575 0.337082 TTGGGACGGAGGGAGTATGA 59.663 55.000 0.00 0.00 0.00 2.15
2071 2576 0.337082 TGGGACGGAGGGAGTATGAA 59.663 55.000 0.00 0.00 0.00 2.57
2072 2577 1.273381 TGGGACGGAGGGAGTATGAAA 60.273 52.381 0.00 0.00 0.00 2.69
2073 2578 2.047830 GGGACGGAGGGAGTATGAAAT 58.952 52.381 0.00 0.00 0.00 2.17
2074 2579 2.438392 GGGACGGAGGGAGTATGAAATT 59.562 50.000 0.00 0.00 0.00 1.82
2075 2580 3.644738 GGGACGGAGGGAGTATGAAATTA 59.355 47.826 0.00 0.00 0.00 1.40
2076 2581 4.102054 GGGACGGAGGGAGTATGAAATTAA 59.898 45.833 0.00 0.00 0.00 1.40
2077 2582 5.221864 GGGACGGAGGGAGTATGAAATTAAT 60.222 44.000 0.00 0.00 0.00 1.40
2078 2583 6.013984 GGGACGGAGGGAGTATGAAATTAATA 60.014 42.308 0.00 0.00 0.00 0.98
2079 2584 7.311109 GGGACGGAGGGAGTATGAAATTAATAT 60.311 40.741 0.00 0.00 0.00 1.28
2080 2585 8.101419 GGACGGAGGGAGTATGAAATTAATATT 58.899 37.037 0.00 0.00 0.00 1.28
2093 2598 8.334263 TGAAATTAATATTATCAGATGCGCCA 57.666 30.769 4.18 0.00 0.00 5.69
2094 2599 8.959548 TGAAATTAATATTATCAGATGCGCCAT 58.040 29.630 4.18 0.00 0.00 4.40
2095 2600 9.229784 GAAATTAATATTATCAGATGCGCCATG 57.770 33.333 4.18 0.23 0.00 3.66
2096 2601 8.510243 AATTAATATTATCAGATGCGCCATGA 57.490 30.769 4.18 6.87 0.00 3.07
2097 2602 7.920160 TTAATATTATCAGATGCGCCATGAA 57.080 32.000 4.18 0.00 0.00 2.57
2098 2603 6.822667 AATATTATCAGATGCGCCATGAAA 57.177 33.333 4.18 4.63 0.00 2.69
2099 2604 7.400599 AATATTATCAGATGCGCCATGAAAT 57.599 32.000 4.18 10.80 0.00 2.17
2100 2605 8.510243 AATATTATCAGATGCGCCATGAAATA 57.490 30.769 4.18 12.33 0.00 1.40
2101 2606 8.687292 ATATTATCAGATGCGCCATGAAATAT 57.313 30.769 4.18 13.70 0.00 1.28
2102 2607 9.783081 ATATTATCAGATGCGCCATGAAATATA 57.217 29.630 4.18 6.55 0.00 0.86
2103 2608 8.687292 ATTATCAGATGCGCCATGAAATATAT 57.313 30.769 4.18 0.00 0.00 0.86
2104 2609 8.510243 TTATCAGATGCGCCATGAAATATATT 57.490 30.769 4.18 0.00 0.00 1.28
2105 2610 6.822667 TCAGATGCGCCATGAAATATATTT 57.177 33.333 10.51 10.51 0.00 1.40
2106 2611 7.218228 TCAGATGCGCCATGAAATATATTTT 57.782 32.000 11.92 0.00 0.00 1.82
2107 2612 7.307694 TCAGATGCGCCATGAAATATATTTTC 58.692 34.615 11.92 6.46 0.00 2.29
2108 2613 7.040548 TCAGATGCGCCATGAAATATATTTTCA 60.041 33.333 11.92 11.17 41.91 2.69
2109 2614 7.758076 CAGATGCGCCATGAAATATATTTTCAT 59.242 33.333 11.92 12.66 46.59 2.57
2110 2615 8.959548 AGATGCGCCATGAAATATATTTTCATA 58.040 29.630 11.92 8.83 44.60 2.15
2111 2616 8.915871 ATGCGCCATGAAATATATTTTCATAC 57.084 30.769 11.92 14.08 44.60 2.39
2112 2617 8.109705 TGCGCCATGAAATATATTTTCATACT 57.890 30.769 11.92 0.00 44.60 2.12
2113 2618 9.225436 TGCGCCATGAAATATATTTTCATACTA 57.775 29.630 11.92 8.59 44.60 1.82
2204 2709 9.573133 AACTTTGATCAAATTTTATAAGCGGAG 57.427 29.630 20.76 6.87 0.00 4.63
2205 2710 8.739972 ACTTTGATCAAATTTTATAAGCGGAGT 58.260 29.630 20.76 7.49 0.00 3.85
2217 2722 9.771915 TTTTATAAGCGGAGTAAAAATAAACGG 57.228 29.630 0.00 0.00 0.00 4.44
2218 2723 8.715191 TTATAAGCGGAGTAAAAATAAACGGA 57.285 30.769 0.00 0.00 0.00 4.69
2219 2724 5.541098 AAGCGGAGTAAAAATAAACGGAG 57.459 39.130 0.00 0.00 0.00 4.63
2220 2725 3.937079 AGCGGAGTAAAAATAAACGGAGG 59.063 43.478 0.00 0.00 0.00 4.30
2221 2726 3.934579 GCGGAGTAAAAATAAACGGAGGA 59.065 43.478 0.00 0.00 0.00 3.71
2222 2727 4.392754 GCGGAGTAAAAATAAACGGAGGAA 59.607 41.667 0.00 0.00 0.00 3.36
2223 2728 5.446875 GCGGAGTAAAAATAAACGGAGGAAG 60.447 44.000 0.00 0.00 0.00 3.46
2224 2729 5.640783 CGGAGTAAAAATAAACGGAGGAAGT 59.359 40.000 0.00 0.00 0.00 3.01
2225 2730 6.813152 CGGAGTAAAAATAAACGGAGGAAGTA 59.187 38.462 0.00 0.00 0.00 2.24
2226 2731 7.201470 CGGAGTAAAAATAAACGGAGGAAGTAC 60.201 40.741 0.00 0.00 0.00 2.73
2227 2732 7.065085 GGAGTAAAAATAAACGGAGGAAGTACC 59.935 40.741 0.00 0.00 39.35 3.34
2228 2733 6.881065 AGTAAAAATAAACGGAGGAAGTACCC 59.119 38.462 0.00 0.00 40.05 3.69
2229 2734 3.920231 AATAAACGGAGGAAGTACCCC 57.080 47.619 0.00 0.00 40.05 4.95
2230 2735 1.571955 TAAACGGAGGAAGTACCCCC 58.428 55.000 0.00 0.00 40.05 5.40
2231 2736 0.474273 AAACGGAGGAAGTACCCCCA 60.474 55.000 4.23 0.00 40.05 4.96
2232 2737 1.196766 AACGGAGGAAGTACCCCCAC 61.197 60.000 4.23 0.00 40.05 4.61
2233 2738 1.611261 CGGAGGAAGTACCCCCACA 60.611 63.158 4.23 0.00 40.05 4.17
2234 2739 1.896122 CGGAGGAAGTACCCCCACAC 61.896 65.000 4.23 0.00 40.05 3.82
2235 2740 0.546988 GGAGGAAGTACCCCCACACT 60.547 60.000 4.23 0.00 40.05 3.55
2236 2741 0.613777 GAGGAAGTACCCCCACACTG 59.386 60.000 4.23 0.00 40.05 3.66
2243 2748 0.616371 TACCCCCACACTGTACATGC 59.384 55.000 0.00 0.00 0.00 4.06
2252 2757 3.059884 ACACTGTACATGCAGAAACGAG 58.940 45.455 7.27 0.00 39.62 4.18
2253 2758 2.413112 CACTGTACATGCAGAAACGAGG 59.587 50.000 7.27 0.00 39.62 4.63
2254 2759 1.394917 CTGTACATGCAGAAACGAGGC 59.605 52.381 0.00 0.00 38.70 4.70
2255 2760 1.270571 TGTACATGCAGAAACGAGGCA 60.271 47.619 0.00 0.00 42.43 4.75
2256 2761 1.394917 GTACATGCAGAAACGAGGCAG 59.605 52.381 0.00 0.00 41.40 4.85
2257 2762 0.250467 ACATGCAGAAACGAGGCAGT 60.250 50.000 0.00 0.00 41.40 4.40
2258 2763 0.167470 CATGCAGAAACGAGGCAGTG 59.833 55.000 0.00 0.00 41.40 3.66
2259 2764 0.250467 ATGCAGAAACGAGGCAGTGT 60.250 50.000 0.00 0.00 41.40 3.55
2260 2765 0.391228 TGCAGAAACGAGGCAGTGTA 59.609 50.000 0.00 0.00 32.95 2.90
2261 2766 1.071605 GCAGAAACGAGGCAGTGTAG 58.928 55.000 0.00 0.00 0.00 2.74
2262 2767 1.071605 CAGAAACGAGGCAGTGTAGC 58.928 55.000 0.00 0.00 0.00 3.58
2263 2768 0.679505 AGAAACGAGGCAGTGTAGCA 59.320 50.000 0.00 0.00 35.83 3.49
2264 2769 0.790814 GAAACGAGGCAGTGTAGCAC 59.209 55.000 0.00 0.00 35.83 4.40
2265 2770 0.393077 AAACGAGGCAGTGTAGCACT 59.607 50.000 0.00 0.00 46.51 4.40
2266 2771 1.254026 AACGAGGCAGTGTAGCACTA 58.746 50.000 1.16 0.00 43.43 2.74
2267 2772 0.811915 ACGAGGCAGTGTAGCACTAG 59.188 55.000 1.16 0.00 43.43 2.57
2268 2773 1.095600 CGAGGCAGTGTAGCACTAGA 58.904 55.000 0.00 0.00 43.43 2.43
2269 2774 1.678627 CGAGGCAGTGTAGCACTAGAT 59.321 52.381 0.00 0.00 43.43 1.98
2270 2775 2.287308 CGAGGCAGTGTAGCACTAGATC 60.287 54.545 0.00 0.00 43.43 2.75
2271 2776 2.690497 GAGGCAGTGTAGCACTAGATCA 59.310 50.000 0.00 0.00 43.43 2.92
2272 2777 3.099905 AGGCAGTGTAGCACTAGATCAA 58.900 45.455 0.00 0.00 43.43 2.57
2280 2785 6.039829 AGTGTAGCACTAGATCAATCATTCGA 59.960 38.462 0.00 0.00 43.46 3.71
2289 2794 5.872963 AGATCAATCATTCGATCCATGGAA 58.127 37.500 20.67 1.57 39.09 3.53
2304 2809 3.707611 CCATGGAAATGGACCAATGACAT 59.292 43.478 5.56 0.00 44.39 3.06
2305 2810 4.442332 CCATGGAAATGGACCAATGACATG 60.442 45.833 5.56 18.36 44.39 3.21
2334 2849 3.544440 CGACACAGCTCGATGTAGTACTC 60.544 52.174 0.00 0.00 35.58 2.59
2354 2869 4.669809 TTTGGACGGCCCCGCAAT 62.670 61.111 3.83 0.00 44.19 3.56
2355 2870 2.766306 TTTTGGACGGCCCCGCAATA 62.766 55.000 3.83 0.00 44.19 1.90
2356 2871 3.690685 TTGGACGGCCCCGCAATAG 62.691 63.158 3.83 0.00 44.19 1.73
2374 2892 2.736144 AGAATTCAACGCGAGGTACA 57.264 45.000 15.93 0.00 0.00 2.90
2414 2932 1.607467 AGAATTGGCAGGCACCCAC 60.607 57.895 0.00 0.00 30.65 4.61
2461 2979 1.153958 GTAACTTCCGTCGGGACCG 60.154 63.158 12.29 3.96 43.74 4.79
2462 2980 2.342650 TAACTTCCGTCGGGACCGG 61.343 63.158 12.29 0.00 43.74 5.28
2480 2998 4.403734 ACCGGGTGTTCATATTCACTTTT 58.596 39.130 6.32 0.00 35.26 2.27
2481 2999 4.217550 ACCGGGTGTTCATATTCACTTTTG 59.782 41.667 6.32 0.00 35.26 2.44
2483 3001 4.494484 GGGTGTTCATATTCACTTTTGCC 58.506 43.478 0.00 0.00 35.26 4.52
2484 3002 4.165779 GGTGTTCATATTCACTTTTGCCG 58.834 43.478 0.00 0.00 35.26 5.69
2493 3011 1.202592 TCACTTTTGCCGCTAGACACA 60.203 47.619 0.00 0.00 0.00 3.72
2494 3012 1.806542 CACTTTTGCCGCTAGACACAT 59.193 47.619 0.00 0.00 0.00 3.21
2500 3018 0.314302 GCCGCTAGACACATCCGTAT 59.686 55.000 0.00 0.00 0.00 3.06
2501 3019 1.269621 GCCGCTAGACACATCCGTATT 60.270 52.381 0.00 0.00 0.00 1.89
2502 3020 2.802057 GCCGCTAGACACATCCGTATTT 60.802 50.000 0.00 0.00 0.00 1.40
2503 3021 3.551454 GCCGCTAGACACATCCGTATTTA 60.551 47.826 0.00 0.00 0.00 1.40
2509 3027 7.116376 CGCTAGACACATCCGTATTTATTTGAT 59.884 37.037 0.00 0.00 0.00 2.57
2512 3030 6.984474 AGACACATCCGTATTTATTTGATCGT 59.016 34.615 0.00 0.00 0.00 3.73
2525 3043 9.716507 ATTTATTTGATCGTCAAGTAATTTCGG 57.283 29.630 12.69 0.00 38.03 4.30
2579 3097 9.444600 AACGGAAAACATACACTATGACTATTT 57.555 29.630 0.00 0.00 39.45 1.40
2590 3108 8.268850 ACACTATGACTATTTTGCTAAGTTGG 57.731 34.615 0.00 0.00 0.00 3.77
2598 3116 7.658261 ACTATTTTGCTAAGTTGGAGAAAACC 58.342 34.615 0.00 0.00 0.00 3.27
2602 3120 3.070446 TGCTAAGTTGGAGAAAACCGAGA 59.930 43.478 0.00 0.00 0.00 4.04
2610 3128 3.502211 TGGAGAAAACCGAGAAAATGAGC 59.498 43.478 0.00 0.00 0.00 4.26
2619 3137 5.600696 ACCGAGAAAATGAGCAACAAAAAT 58.399 33.333 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.827797 GCCTATTAACTGGATGAATTGGTCA 59.172 40.000 0.20 0.00 41.67 4.02
92 93 3.026694 CTCCCCAATGTTGAGGAAATCC 58.973 50.000 0.00 0.00 34.47 3.01
167 189 2.281208 TTGTCGCCAAGGAACCGG 60.281 61.111 0.00 0.00 0.00 5.28
168 190 1.234615 ATGTTGTCGCCAAGGAACCG 61.235 55.000 0.00 0.00 0.00 4.44
169 191 0.521735 GATGTTGTCGCCAAGGAACC 59.478 55.000 0.00 0.00 0.00 3.62
170 192 0.165944 CGATGTTGTCGCCAAGGAAC 59.834 55.000 0.00 0.00 44.33 3.62
171 193 2.539003 CGATGTTGTCGCCAAGGAA 58.461 52.632 0.00 0.00 44.33 3.36
172 194 4.277239 CGATGTTGTCGCCAAGGA 57.723 55.556 0.00 0.00 44.33 3.36
207 229 1.480312 CCAACCCCATGTTTCCAGTCA 60.480 52.381 0.00 0.00 34.00 3.41
219 241 1.140134 CCCTTTCCTCTCCAACCCCA 61.140 60.000 0.00 0.00 0.00 4.96
234 256 0.793617 TCCTCTCTGTCCTTCCCCTT 59.206 55.000 0.00 0.00 0.00 3.95
245 267 0.103937 GGCGGACATCTTCCTCTCTG 59.896 60.000 0.00 0.00 43.25 3.35
246 268 0.324738 TGGCGGACATCTTCCTCTCT 60.325 55.000 0.00 0.00 43.25 3.10
266 288 4.504916 CTCACTCCTCGCCGCCAG 62.505 72.222 0.00 0.00 0.00 4.85
284 345 0.684805 ATTCGAGTCTTCCTCCGCCT 60.685 55.000 0.00 0.00 36.82 5.52
302 363 2.446435 GTGGACCACAAACCATAGCAT 58.554 47.619 20.14 0.00 38.48 3.79
308 369 0.322636 ACAACGTGGACCACAAACCA 60.323 50.000 24.18 0.00 33.40 3.67
314 375 3.343421 GGCGACAACGTGGACCAC 61.343 66.667 15.13 15.13 41.98 4.16
332 393 9.996554 AATAGTTAAGCCTAGCAAACAAAAATT 57.003 25.926 7.33 0.00 31.97 1.82
381 820 8.633075 CCATACAGGTATTAAAAACTGCAATG 57.367 34.615 0.00 0.00 34.40 2.82
475 914 2.939103 GTGCGAAAGTTCTATCCTGCAT 59.061 45.455 0.00 0.00 33.25 3.96
499 938 1.990563 GTCAAAGACAAGCATGCATGC 59.009 47.619 38.60 38.60 42.09 4.06
500 939 3.570926 AGTCAAAGACAAGCATGCATG 57.429 42.857 22.70 22.70 34.60 4.06
501 940 3.319972 ACAAGTCAAAGACAAGCATGCAT 59.680 39.130 21.98 4.57 34.60 3.96
502 941 2.689471 ACAAGTCAAAGACAAGCATGCA 59.311 40.909 21.98 0.00 34.60 3.96
569 1008 6.222038 TCGTCCTATCCTATTTATGGCATC 57.778 41.667 1.65 0.00 0.00 3.91
586 1025 1.938585 TCAAAGACCTGGATCGTCCT 58.061 50.000 0.00 0.00 37.46 3.85
610 1049 4.038162 GGTCTGCCGTCTAATCTCACTTAT 59.962 45.833 0.00 0.00 0.00 1.73
611 1050 3.380637 GGTCTGCCGTCTAATCTCACTTA 59.619 47.826 0.00 0.00 0.00 2.24
612 1051 2.166664 GGTCTGCCGTCTAATCTCACTT 59.833 50.000 0.00 0.00 0.00 3.16
676 1115 8.383318 AGTTTCACGTACAGTAGTACTCTTTA 57.617 34.615 0.00 0.00 46.68 1.85
677 1116 7.269477 AGTTTCACGTACAGTAGTACTCTTT 57.731 36.000 0.00 0.00 46.68 2.52
680 1119 6.370166 AGGTAGTTTCACGTACAGTAGTACTC 59.630 42.308 0.00 0.00 46.68 2.59
683 1122 5.106555 GCAGGTAGTTTCACGTACAGTAGTA 60.107 44.000 0.00 0.00 0.00 1.82
684 1123 4.320788 GCAGGTAGTTTCACGTACAGTAGT 60.321 45.833 0.00 0.00 0.00 2.73
685 1124 4.082895 AGCAGGTAGTTTCACGTACAGTAG 60.083 45.833 0.00 0.00 0.00 2.57
686 1125 3.822735 AGCAGGTAGTTTCACGTACAGTA 59.177 43.478 0.00 0.00 0.00 2.74
687 1126 2.626743 AGCAGGTAGTTTCACGTACAGT 59.373 45.455 0.00 0.00 0.00 3.55
688 1127 2.987149 CAGCAGGTAGTTTCACGTACAG 59.013 50.000 0.00 0.00 0.00 2.74
689 1128 2.624364 TCAGCAGGTAGTTTCACGTACA 59.376 45.455 0.00 0.00 0.00 2.90
735 1174 3.730761 GCAAGGTGCAGTGGAGCG 61.731 66.667 8.25 0.00 44.26 5.03
848 1293 3.193479 CCAAGACAAGTAAATGGGAAGGC 59.807 47.826 0.00 0.00 0.00 4.35
849 1294 4.662278 TCCAAGACAAGTAAATGGGAAGG 58.338 43.478 0.00 0.00 0.00 3.46
850 1295 6.840780 AATCCAAGACAAGTAAATGGGAAG 57.159 37.500 0.00 0.00 0.00 3.46
852 1297 6.015519 CACAAATCCAAGACAAGTAAATGGGA 60.016 38.462 0.00 0.00 0.00 4.37
854 1299 6.748132 ACACAAATCCAAGACAAGTAAATGG 58.252 36.000 0.00 0.00 0.00 3.16
855 1300 8.783093 TCTACACAAATCCAAGACAAGTAAATG 58.217 33.333 0.00 0.00 0.00 2.32
857 1302 8.918202 ATCTACACAAATCCAAGACAAGTAAA 57.082 30.769 0.00 0.00 0.00 2.01
858 1303 9.431887 GTATCTACACAAATCCAAGACAAGTAA 57.568 33.333 0.00 0.00 0.00 2.24
859 1304 8.590204 TGTATCTACACAAATCCAAGACAAGTA 58.410 33.333 0.00 0.00 0.00 2.24
862 1307 8.862325 ATTGTATCTACACAAATCCAAGACAA 57.138 30.769 0.00 0.00 41.50 3.18
863 1308 8.729756 CAATTGTATCTACACAAATCCAAGACA 58.270 33.333 0.00 0.00 41.50 3.41
864 1309 8.730680 ACAATTGTATCTACACAAATCCAAGAC 58.269 33.333 9.97 0.00 41.50 3.01
865 1310 8.862325 ACAATTGTATCTACACAAATCCAAGA 57.138 30.769 9.97 0.00 41.50 3.02
888 1333 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
892 1337 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
895 1340 9.757227 GAATGTATCTAGCACTAAAATGAGTCT 57.243 33.333 0.00 0.00 0.00 3.24
896 1341 9.534565 TGAATGTATCTAGCACTAAAATGAGTC 57.465 33.333 0.00 0.00 0.00 3.36
943 1388 3.181468 ACTCCCTCCGTTCCGAATTATTC 60.181 47.826 0.00 0.00 0.00 1.75
944 1389 2.770232 ACTCCCTCCGTTCCGAATTATT 59.230 45.455 0.00 0.00 0.00 1.40
945 1390 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
946 1391 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
947 1392 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
948 1393 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
949 1394 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.00 0.00 4.30
950 1395 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
951 1396 1.379576 AGGTACTCCCTCCGTTCCG 60.380 63.158 0.00 0.00 40.71 4.30
952 1397 4.781264 AGGTACTCCCTCCGTTCC 57.219 61.111 0.00 0.00 40.71 3.62
964 1409 2.223900 GGGTTGTGGTATAGCGAGGTAC 60.224 54.545 0.00 0.00 0.00 3.34
1450 1898 2.689035 TTTGACACATCGGCAGGGCA 62.689 55.000 0.00 0.00 0.00 5.36
1461 1915 1.971167 GGATGGCGCCTTTGACACA 60.971 57.895 29.70 4.25 0.00 3.72
1509 1975 0.888619 CAGACAAGTCGCTGGAGGTA 59.111 55.000 0.00 0.00 34.09 3.08
1661 2130 3.277211 TAGGTCCACAGCGACGTGC 62.277 63.158 0.00 0.00 46.98 5.34
1676 2151 3.449737 TCCAAATCCGTCCAACTAGTAGG 59.550 47.826 0.00 0.00 0.00 3.18
1713 2193 5.433526 TGGTAAAAACACAGTACTGCTCTT 58.566 37.500 22.90 10.10 0.00 2.85
1782 2286 5.305585 AGAAACCGAGAGCTTTCACATTTA 58.694 37.500 4.97 0.00 0.00 1.40
1810 2315 2.525629 TCAGGTGTGCCCTTCCGA 60.526 61.111 0.00 0.00 42.73 4.55
1836 2341 7.817418 ATAAACAAAGAAGCTCAGGTGTAAA 57.183 32.000 0.00 0.00 0.00 2.01
1837 2342 7.500892 TGAATAAACAAAGAAGCTCAGGTGTAA 59.499 33.333 0.00 0.00 0.00 2.41
1838 2343 6.995686 TGAATAAACAAAGAAGCTCAGGTGTA 59.004 34.615 0.00 0.00 0.00 2.90
1839 2344 5.827797 TGAATAAACAAAGAAGCTCAGGTGT 59.172 36.000 0.00 0.00 0.00 4.16
1840 2345 6.317789 TGAATAAACAAAGAAGCTCAGGTG 57.682 37.500 0.00 0.00 0.00 4.00
1841 2346 6.959639 TTGAATAAACAAAGAAGCTCAGGT 57.040 33.333 0.00 0.00 0.00 4.00
1868 2373 3.201266 ACCCGGATGGAGCACTATTTAAA 59.799 43.478 0.73 0.00 37.49 1.52
1869 2374 2.775384 ACCCGGATGGAGCACTATTTAA 59.225 45.455 0.73 0.00 37.49 1.52
1870 2375 2.404559 ACCCGGATGGAGCACTATTTA 58.595 47.619 0.73 0.00 37.49 1.40
1871 2376 1.213296 ACCCGGATGGAGCACTATTT 58.787 50.000 0.73 0.00 37.49 1.40
1872 2377 1.213296 AACCCGGATGGAGCACTATT 58.787 50.000 0.73 0.00 37.49 1.73
1873 2378 1.213296 AAACCCGGATGGAGCACTAT 58.787 50.000 0.73 0.00 37.49 2.12
1874 2379 0.988832 AAAACCCGGATGGAGCACTA 59.011 50.000 0.73 0.00 37.49 2.74
1875 2380 0.112412 AAAAACCCGGATGGAGCACT 59.888 50.000 0.73 0.00 37.49 4.40
1876 2381 2.653557 AAAAACCCGGATGGAGCAC 58.346 52.632 0.73 0.00 37.49 4.40
1899 2404 8.296713 GCTTGACTTTGACCAAAACTTATATGA 58.703 33.333 0.00 0.00 0.00 2.15
1900 2405 8.299570 AGCTTGACTTTGACCAAAACTTATATG 58.700 33.333 0.00 0.00 0.00 1.78
1901 2406 8.409358 AGCTTGACTTTGACCAAAACTTATAT 57.591 30.769 0.00 0.00 0.00 0.86
1902 2407 7.817418 AGCTTGACTTTGACCAAAACTTATA 57.183 32.000 0.00 0.00 0.00 0.98
1903 2408 6.715347 AGCTTGACTTTGACCAAAACTTAT 57.285 33.333 0.00 0.00 0.00 1.73
1904 2409 6.524101 AAGCTTGACTTTGACCAAAACTTA 57.476 33.333 0.00 0.00 33.71 2.24
1905 2410 5.405935 AAGCTTGACTTTGACCAAAACTT 57.594 34.783 0.00 0.00 33.71 2.66
1906 2411 5.405935 AAAGCTTGACTTTGACCAAAACT 57.594 34.783 0.00 0.00 47.00 2.66
1974 2479 9.505995 GACACTTATTTTGAAACGGAAAAAGTA 57.494 29.630 0.00 0.00 0.00 2.24
1975 2480 8.248253 AGACACTTATTTTGAAACGGAAAAAGT 58.752 29.630 0.00 0.00 0.00 2.66
1976 2481 8.628882 AGACACTTATTTTGAAACGGAAAAAG 57.371 30.769 0.00 0.00 0.00 2.27
1977 2482 8.244802 TGAGACACTTATTTTGAAACGGAAAAA 58.755 29.630 0.00 0.00 0.00 1.94
1978 2483 7.763356 TGAGACACTTATTTTGAAACGGAAAA 58.237 30.769 0.00 0.00 0.00 2.29
1979 2484 7.323049 TGAGACACTTATTTTGAAACGGAAA 57.677 32.000 0.00 0.00 0.00 3.13
1980 2485 6.928979 TGAGACACTTATTTTGAAACGGAA 57.071 33.333 0.00 0.00 0.00 4.30
1981 2486 6.928979 TTGAGACACTTATTTTGAAACGGA 57.071 33.333 0.00 0.00 0.00 4.69
1982 2487 8.574196 AAATTGAGACACTTATTTTGAAACGG 57.426 30.769 0.00 0.00 0.00 4.44
1993 2498 9.216117 GGAGCTAGTTAAAAATTGAGACACTTA 57.784 33.333 0.00 0.00 0.00 2.24
1994 2499 7.719633 TGGAGCTAGTTAAAAATTGAGACACTT 59.280 33.333 0.00 0.00 0.00 3.16
1995 2500 7.224297 TGGAGCTAGTTAAAAATTGAGACACT 58.776 34.615 0.00 0.00 0.00 3.55
1996 2501 7.173390 ACTGGAGCTAGTTAAAAATTGAGACAC 59.827 37.037 0.00 0.00 0.00 3.67
1997 2502 7.224297 ACTGGAGCTAGTTAAAAATTGAGACA 58.776 34.615 0.00 0.00 0.00 3.41
1998 2503 7.674471 ACTGGAGCTAGTTAAAAATTGAGAC 57.326 36.000 0.00 0.00 0.00 3.36
1999 2504 8.372459 TGTACTGGAGCTAGTTAAAAATTGAGA 58.628 33.333 0.00 0.00 32.19 3.27
2000 2505 8.547967 TGTACTGGAGCTAGTTAAAAATTGAG 57.452 34.615 0.00 0.00 32.19 3.02
2001 2506 9.515226 AATGTACTGGAGCTAGTTAAAAATTGA 57.485 29.630 0.00 0.00 32.19 2.57
2004 2509 9.297037 ACAAATGTACTGGAGCTAGTTAAAAAT 57.703 29.630 0.00 0.00 32.19 1.82
2005 2510 8.685838 ACAAATGTACTGGAGCTAGTTAAAAA 57.314 30.769 0.00 0.00 32.19 1.94
2006 2511 9.211485 GTACAAATGTACTGGAGCTAGTTAAAA 57.789 33.333 14.84 0.00 45.47 1.52
2007 2512 8.767478 GTACAAATGTACTGGAGCTAGTTAAA 57.233 34.615 14.84 0.00 45.47 1.52
2022 2527 6.588204 AGTGTCTTGAACTGGTACAAATGTA 58.412 36.000 0.00 0.00 38.70 2.29
2023 2528 5.437060 AGTGTCTTGAACTGGTACAAATGT 58.563 37.500 0.00 0.00 38.70 2.71
2024 2529 6.377327 AAGTGTCTTGAACTGGTACAAATG 57.623 37.500 0.00 0.00 38.70 2.32
2025 2530 8.691661 AATAAGTGTCTTGAACTGGTACAAAT 57.308 30.769 0.00 0.00 38.70 2.32
2026 2531 8.514330 AAATAAGTGTCTTGAACTGGTACAAA 57.486 30.769 0.00 0.00 38.70 2.83
2027 2532 8.402472 CAAAATAAGTGTCTTGAACTGGTACAA 58.598 33.333 0.00 0.00 38.70 2.41
2028 2533 7.012894 CCAAAATAAGTGTCTTGAACTGGTACA 59.987 37.037 0.00 0.00 0.00 2.90
2029 2534 7.360361 CCAAAATAAGTGTCTTGAACTGGTAC 58.640 38.462 0.00 0.00 0.00 3.34
2030 2535 6.488683 CCCAAAATAAGTGTCTTGAACTGGTA 59.511 38.462 0.00 0.00 0.00 3.25
2031 2536 5.301805 CCCAAAATAAGTGTCTTGAACTGGT 59.698 40.000 0.00 0.00 0.00 4.00
2032 2537 5.534654 TCCCAAAATAAGTGTCTTGAACTGG 59.465 40.000 0.00 0.00 0.00 4.00
2033 2538 6.438763 GTCCCAAAATAAGTGTCTTGAACTG 58.561 40.000 0.00 0.00 0.00 3.16
2034 2539 5.238650 CGTCCCAAAATAAGTGTCTTGAACT 59.761 40.000 0.00 0.00 0.00 3.01
2035 2540 5.449304 CGTCCCAAAATAAGTGTCTTGAAC 58.551 41.667 0.00 0.00 0.00 3.18
2036 2541 4.517453 CCGTCCCAAAATAAGTGTCTTGAA 59.483 41.667 0.00 0.00 0.00 2.69
2037 2542 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2038 2543 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2039 2544 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2040 2545 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2041 2546 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2042 2547 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2043 2548 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2044 2549 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2045 2550 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2046 2551 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2047 2552 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2048 2553 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2049 2554 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2050 2555 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2051 2556 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
2052 2557 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
2053 2558 1.492764 TTTCATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
2054 2559 3.840124 AATTTCATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
2067 2572 8.959548 TGGCGCATCTGATAATATTAATTTCAT 58.040 29.630 10.83 0.00 0.00 2.57
2068 2573 8.334263 TGGCGCATCTGATAATATTAATTTCA 57.666 30.769 10.83 0.00 0.00 2.69
2069 2574 9.229784 CATGGCGCATCTGATAATATTAATTTC 57.770 33.333 10.83 0.00 0.00 2.17
2070 2575 8.959548 TCATGGCGCATCTGATAATATTAATTT 58.040 29.630 10.83 0.00 0.00 1.82
2071 2576 8.510243 TCATGGCGCATCTGATAATATTAATT 57.490 30.769 10.83 0.00 0.00 1.40
2072 2577 8.510243 TTCATGGCGCATCTGATAATATTAAT 57.490 30.769 10.83 0.00 0.00 1.40
2073 2578 7.920160 TTCATGGCGCATCTGATAATATTAA 57.080 32.000 10.83 0.00 0.00 1.40
2074 2579 7.920160 TTTCATGGCGCATCTGATAATATTA 57.080 32.000 10.83 0.00 0.00 0.98
2075 2580 6.822667 TTTCATGGCGCATCTGATAATATT 57.177 33.333 10.83 0.00 0.00 1.28
2076 2581 8.687292 ATATTTCATGGCGCATCTGATAATAT 57.313 30.769 10.83 15.02 0.00 1.28
2077 2582 9.783081 ATATATTTCATGGCGCATCTGATAATA 57.217 29.630 10.83 13.73 0.00 0.98
2078 2583 8.687292 ATATATTTCATGGCGCATCTGATAAT 57.313 30.769 10.83 12.29 0.00 1.28
2079 2584 8.510243 AATATATTTCATGGCGCATCTGATAA 57.490 30.769 10.83 6.48 0.00 1.75
2080 2585 8.510243 AAATATATTTCATGGCGCATCTGATA 57.490 30.769 10.83 4.23 0.00 2.15
2081 2586 7.400599 AAATATATTTCATGGCGCATCTGAT 57.599 32.000 10.83 0.00 0.00 2.90
2082 2587 6.822667 AAATATATTTCATGGCGCATCTGA 57.177 33.333 10.83 5.63 0.00 3.27
2083 2588 7.085746 TGAAAATATATTTCATGGCGCATCTG 58.914 34.615 10.83 2.86 33.90 2.90
2084 2589 7.218228 TGAAAATATATTTCATGGCGCATCT 57.782 32.000 10.83 0.00 33.90 2.90
2085 2590 9.013490 GTATGAAAATATATTTCATGGCGCATC 57.987 33.333 20.81 11.01 45.55 3.91
2086 2591 8.742777 AGTATGAAAATATATTTCATGGCGCAT 58.257 29.630 20.81 14.27 45.55 4.73
2087 2592 8.109705 AGTATGAAAATATATTTCATGGCGCA 57.890 30.769 20.81 0.00 45.55 6.09
2178 2683 9.573133 CTCCGCTTATAAAATTTGATCAAAGTT 57.427 29.630 24.10 24.10 39.84 2.66
2179 2684 8.739972 ACTCCGCTTATAAAATTTGATCAAAGT 58.260 29.630 24.17 19.88 33.32 2.66
2191 2696 9.771915 CCGTTTATTTTTACTCCGCTTATAAAA 57.228 29.630 0.00 0.00 0.00 1.52
2192 2697 9.160496 TCCGTTTATTTTTACTCCGCTTATAAA 57.840 29.630 0.00 0.00 0.00 1.40
2193 2698 8.715191 TCCGTTTATTTTTACTCCGCTTATAA 57.285 30.769 0.00 0.00 0.00 0.98
2194 2699 7.439056 CCTCCGTTTATTTTTACTCCGCTTATA 59.561 37.037 0.00 0.00 0.00 0.98
2195 2700 6.259387 CCTCCGTTTATTTTTACTCCGCTTAT 59.741 38.462 0.00 0.00 0.00 1.73
2196 2701 5.581874 CCTCCGTTTATTTTTACTCCGCTTA 59.418 40.000 0.00 0.00 0.00 3.09
2197 2702 4.393990 CCTCCGTTTATTTTTACTCCGCTT 59.606 41.667 0.00 0.00 0.00 4.68
2198 2703 3.937079 CCTCCGTTTATTTTTACTCCGCT 59.063 43.478 0.00 0.00 0.00 5.52
2199 2704 3.934579 TCCTCCGTTTATTTTTACTCCGC 59.065 43.478 0.00 0.00 0.00 5.54
2200 2705 5.640783 ACTTCCTCCGTTTATTTTTACTCCG 59.359 40.000 0.00 0.00 0.00 4.63
2201 2706 7.065085 GGTACTTCCTCCGTTTATTTTTACTCC 59.935 40.741 0.00 0.00 0.00 3.85
2202 2707 7.065085 GGGTACTTCCTCCGTTTATTTTTACTC 59.935 40.741 0.00 0.00 36.25 2.59
2203 2708 6.881065 GGGTACTTCCTCCGTTTATTTTTACT 59.119 38.462 0.00 0.00 36.25 2.24
2204 2709 6.094048 GGGGTACTTCCTCCGTTTATTTTTAC 59.906 42.308 0.00 0.00 36.25 2.01
2205 2710 6.179756 GGGGTACTTCCTCCGTTTATTTTTA 58.820 40.000 0.00 0.00 36.25 1.52
2206 2711 5.012239 GGGGTACTTCCTCCGTTTATTTTT 58.988 41.667 0.00 0.00 36.25 1.94
2207 2712 4.592942 GGGGTACTTCCTCCGTTTATTTT 58.407 43.478 0.00 0.00 36.25 1.82
2208 2713 4.226427 GGGGTACTTCCTCCGTTTATTT 57.774 45.455 0.00 0.00 36.25 1.40
2209 2714 3.920231 GGGGTACTTCCTCCGTTTATT 57.080 47.619 0.00 0.00 36.25 1.40
2217 2722 0.613777 CAGTGTGGGGGTACTTCCTC 59.386 60.000 0.00 0.00 36.25 3.71
2218 2723 0.104620 ACAGTGTGGGGGTACTTCCT 60.105 55.000 0.00 0.00 36.25 3.36
2219 2724 1.277273 GTACAGTGTGGGGGTACTTCC 59.723 57.143 5.88 0.00 35.63 3.46
2220 2725 1.972795 TGTACAGTGTGGGGGTACTTC 59.027 52.381 5.88 0.00 38.50 3.01
2221 2726 2.106187 TGTACAGTGTGGGGGTACTT 57.894 50.000 5.88 0.00 38.50 2.24
2222 2727 1.906574 CATGTACAGTGTGGGGGTACT 59.093 52.381 5.88 0.00 38.50 2.73
2223 2728 1.677820 GCATGTACAGTGTGGGGGTAC 60.678 57.143 5.88 0.00 38.25 3.34
2224 2729 0.616371 GCATGTACAGTGTGGGGGTA 59.384 55.000 5.88 0.00 0.00 3.69
2225 2730 1.378762 GCATGTACAGTGTGGGGGT 59.621 57.895 5.88 0.00 0.00 4.95
2226 2731 0.677731 CTGCATGTACAGTGTGGGGG 60.678 60.000 5.88 0.00 32.78 5.40
2227 2732 0.324614 TCTGCATGTACAGTGTGGGG 59.675 55.000 5.88 0.00 38.84 4.96
2228 2733 2.183478 TTCTGCATGTACAGTGTGGG 57.817 50.000 5.88 0.00 38.84 4.61
2229 2734 2.096268 CGTTTCTGCATGTACAGTGTGG 60.096 50.000 5.88 0.00 38.84 4.17
2230 2735 2.799978 TCGTTTCTGCATGTACAGTGTG 59.200 45.455 5.88 0.00 38.84 3.82
2231 2736 3.059884 CTCGTTTCTGCATGTACAGTGT 58.940 45.455 0.33 0.00 38.84 3.55
2232 2737 2.413112 CCTCGTTTCTGCATGTACAGTG 59.587 50.000 0.33 1.44 38.84 3.66
2233 2738 2.688507 CCTCGTTTCTGCATGTACAGT 58.311 47.619 0.33 0.00 38.84 3.55
2234 2739 1.394917 GCCTCGTTTCTGCATGTACAG 59.605 52.381 0.33 0.00 39.12 2.74
2235 2740 1.270571 TGCCTCGTTTCTGCATGTACA 60.271 47.619 0.00 0.00 0.00 2.90
2236 2741 1.394917 CTGCCTCGTTTCTGCATGTAC 59.605 52.381 0.00 0.00 33.97 2.90
2243 2748 1.071605 GCTACACTGCCTCGTTTCTG 58.928 55.000 0.00 0.00 0.00 3.02
2252 2757 3.526931 TTGATCTAGTGCTACACTGCC 57.473 47.619 10.42 0.00 45.01 4.85
2253 2758 4.686972 TGATTGATCTAGTGCTACACTGC 58.313 43.478 10.42 0.00 45.01 4.40
2254 2759 6.143598 CGAATGATTGATCTAGTGCTACACTG 59.856 42.308 10.42 1.43 45.01 3.66
2256 2761 6.209361 TCGAATGATTGATCTAGTGCTACAC 58.791 40.000 0.00 0.00 34.10 2.90
2257 2762 6.391227 TCGAATGATTGATCTAGTGCTACA 57.609 37.500 0.00 0.00 0.00 2.74
2258 2763 6.529829 GGATCGAATGATTGATCTAGTGCTAC 59.470 42.308 13.39 0.00 43.43 3.58
2259 2764 6.209391 TGGATCGAATGATTGATCTAGTGCTA 59.791 38.462 13.39 0.00 43.43 3.49
2260 2765 5.011431 TGGATCGAATGATTGATCTAGTGCT 59.989 40.000 13.39 0.00 43.43 4.40
2261 2766 5.233225 TGGATCGAATGATTGATCTAGTGC 58.767 41.667 13.39 0.00 43.43 4.40
2262 2767 6.313164 CCATGGATCGAATGATTGATCTAGTG 59.687 42.308 5.56 10.63 43.43 2.74
2263 2768 6.212187 TCCATGGATCGAATGATTGATCTAGT 59.788 38.462 11.44 3.12 43.43 2.57
2264 2769 6.637657 TCCATGGATCGAATGATTGATCTAG 58.362 40.000 11.44 0.00 43.43 2.43
2265 2770 6.610075 TCCATGGATCGAATGATTGATCTA 57.390 37.500 11.44 9.98 43.43 1.98
2266 2771 5.494390 TCCATGGATCGAATGATTGATCT 57.506 39.130 11.44 0.00 43.43 2.75
2267 2772 6.564709 TTTCCATGGATCGAATGATTGATC 57.435 37.500 17.06 8.25 43.26 2.92
2268 2773 6.920817 CATTTCCATGGATCGAATGATTGAT 58.079 36.000 24.48 0.00 34.09 2.57
2269 2774 6.321848 CATTTCCATGGATCGAATGATTGA 57.678 37.500 24.48 1.52 34.09 2.57
2289 2794 4.403432 GTCCATTCATGTCATTGGTCCATT 59.597 41.667 0.00 0.00 0.00 3.16
2304 2809 0.388520 CGAGCTGTGTCGTCCATTCA 60.389 55.000 0.00 0.00 35.14 2.57
2305 2810 0.109272 TCGAGCTGTGTCGTCCATTC 60.109 55.000 0.00 0.00 40.93 2.67
2334 2849 4.050934 GCGGGGCCGTCCAAAAAG 62.051 66.667 0.00 0.00 42.09 2.27
2354 2869 3.192001 ACTGTACCTCGCGTTGAATTCTA 59.808 43.478 5.77 0.00 0.00 2.10
2355 2870 2.029290 ACTGTACCTCGCGTTGAATTCT 60.029 45.455 5.77 0.00 0.00 2.40
2356 2871 2.334838 ACTGTACCTCGCGTTGAATTC 58.665 47.619 5.77 0.00 0.00 2.17
2374 2892 1.806542 GCCATCACACATGAACGAACT 59.193 47.619 0.00 0.00 38.69 3.01
2414 2932 7.389053 GCTATACCCCTGTTCTTGAGATATTTG 59.611 40.741 0.00 0.00 0.00 2.32
2461 2979 4.494484 GGCAAAAGTGAATATGAACACCC 58.506 43.478 0.00 0.00 37.69 4.61
2462 2980 4.165779 CGGCAAAAGTGAATATGAACACC 58.834 43.478 0.00 0.00 37.69 4.16
2480 2998 1.033202 TACGGATGTGTCTAGCGGCA 61.033 55.000 1.45 0.00 0.00 5.69
2481 2999 0.314302 ATACGGATGTGTCTAGCGGC 59.686 55.000 0.00 0.00 0.00 6.53
2483 3001 6.419710 TCAAATAAATACGGATGTGTCTAGCG 59.580 38.462 0.00 0.00 0.00 4.26
2484 3002 7.709269 TCAAATAAATACGGATGTGTCTAGC 57.291 36.000 0.00 0.00 0.00 3.42
2493 3011 9.537192 TTACTTGACGATCAAATAAATACGGAT 57.463 29.630 0.00 0.00 35.73 4.18
2494 3012 8.929827 TTACTTGACGATCAAATAAATACGGA 57.070 30.769 0.00 0.00 35.73 4.69
2500 3018 8.937884 TCCGAAATTACTTGACGATCAAATAAA 58.062 29.630 0.00 0.00 32.79 1.40
2501 3019 8.385111 GTCCGAAATTACTTGACGATCAAATAA 58.615 33.333 0.00 0.00 35.73 1.40
2502 3020 7.902032 GTCCGAAATTACTTGACGATCAAATA 58.098 34.615 0.00 0.00 35.73 1.40
2503 3021 6.772078 GTCCGAAATTACTTGACGATCAAAT 58.228 36.000 0.00 0.00 35.73 2.32
2512 3030 5.929992 ACTTCATTCGTCCGAAATTACTTGA 59.070 36.000 6.19 2.03 37.69 3.02
2550 3068 8.836268 AGTCATAGTGTATGTTTTCCGTTAAA 57.164 30.769 0.00 0.00 37.45 1.52
2553 3071 9.444600 AAATAGTCATAGTGTATGTTTTCCGTT 57.555 29.630 0.00 0.00 37.45 4.44
2554 3072 9.444600 AAAATAGTCATAGTGTATGTTTTCCGT 57.555 29.630 0.00 0.00 37.45 4.69
2555 3073 9.702726 CAAAATAGTCATAGTGTATGTTTTCCG 57.297 33.333 0.00 0.00 37.45 4.30
2556 3074 9.503427 GCAAAATAGTCATAGTGTATGTTTTCC 57.497 33.333 0.00 0.00 37.45 3.13
2567 3085 8.540388 TCTCCAACTTAGCAAAATAGTCATAGT 58.460 33.333 0.00 0.00 0.00 2.12
2579 3097 3.811083 TCGGTTTTCTCCAACTTAGCAA 58.189 40.909 0.00 0.00 0.00 3.91
2590 3108 4.749245 TGCTCATTTTCTCGGTTTTCTC 57.251 40.909 0.00 0.00 0.00 2.87
2598 3116 7.621832 TGTATTTTTGTTGCTCATTTTCTCG 57.378 32.000 0.00 0.00 0.00 4.04
2602 3120 8.659925 TGTCATGTATTTTTGTTGCTCATTTT 57.340 26.923 0.00 0.00 0.00 1.82
2610 3128 8.195617 AGTGGTTTTGTCATGTATTTTTGTTG 57.804 30.769 0.00 0.00 0.00 3.33
2619 3137 9.508642 TGTCATATAAAGTGGTTTTGTCATGTA 57.491 29.630 0.00 0.00 0.00 2.29
2648 3166 2.283298 CATGAGCGATTAGTGGCTGTT 58.717 47.619 0.00 0.00 39.70 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.